Multiple sequence alignment - TraesCS3B01G172200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G172200 chr3B 100.000 1980 0 0 1 1980 173007047 173009026 0.000000e+00 3657
1 TraesCS3B01G172200 chr3B 97.291 849 23 0 1 849 172171297 172170449 0.000000e+00 1441
2 TraesCS3B01G172200 chr3B 97.593 831 20 0 1 831 172052937 172052107 0.000000e+00 1424
3 TraesCS3B01G172200 chr3B 90.264 832 68 8 1 831 146981679 146982498 0.000000e+00 1075
4 TraesCS3B01G172200 chr3B 100.000 220 0 0 2300 2519 173009346 173009565 8.390000e-110 407
5 TraesCS3B01G172200 chr3B 88.060 134 15 1 1585 1717 659705001 659705134 9.330000e-35 158
6 TraesCS3B01G172200 chr3D 93.510 1587 83 11 1 1578 121341188 121342763 0.000000e+00 2342
7 TraesCS3B01G172200 chr3D 90.158 823 71 7 12 831 121268045 121268860 0.000000e+00 1062
8 TraesCS3B01G172200 chr3D 80.788 203 28 11 2322 2519 121351387 121351583 5.610000e-32 148
9 TraesCS3B01G172200 chr3A 92.866 1570 93 10 1 1564 127858144 127859700 0.000000e+00 2261
10 TraesCS3B01G172200 chr3A 82.955 264 25 7 1713 1956 127859729 127859992 1.170000e-53 220
11 TraesCS3B01G172200 chr3A 92.126 127 9 1 1588 1713 511600001 511600127 7.160000e-41 178
12 TraesCS3B01G172200 chr3A 90.551 127 11 1 1588 1713 540769127 540769253 1.550000e-37 167
13 TraesCS3B01G172200 chr1D 92.623 1586 72 15 1 1573 465902353 465903906 0.000000e+00 2239
14 TraesCS3B01G172200 chr1D 92.980 755 49 2 1 755 341029185 341029935 0.000000e+00 1098
15 TraesCS3B01G172200 chr1B 91.041 1585 79 21 1 1573 642700692 642702225 0.000000e+00 2082
16 TraesCS3B01G172200 chr7A 91.603 131 10 1 1588 1717 71629568 71629438 1.990000e-41 180
17 TraesCS3B01G172200 chr7B 89.474 133 13 1 1585 1716 489143490 489143622 1.550000e-37 167
18 TraesCS3B01G172200 chr2D 90.551 127 11 1 1588 1713 389694275 389694149 1.550000e-37 167
19 TraesCS3B01G172200 chr6A 89.922 129 12 1 1588 1715 489230514 489230642 5.570000e-37 165
20 TraesCS3B01G172200 chr6D 89.764 127 12 1 1588 1713 68652006 68651880 7.210000e-36 161
21 TraesCS3B01G172200 chr4B 88.148 135 14 2 1585 1717 181513716 181513850 2.590000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G172200 chr3B 173007047 173009565 2518 False 2032.0 3657 100.0000 1 2519 2 chr3B.!!$F3 2518
1 TraesCS3B01G172200 chr3B 172170449 172171297 848 True 1441.0 1441 97.2910 1 849 1 chr3B.!!$R2 848
2 TraesCS3B01G172200 chr3B 172052107 172052937 830 True 1424.0 1424 97.5930 1 831 1 chr3B.!!$R1 830
3 TraesCS3B01G172200 chr3B 146981679 146982498 819 False 1075.0 1075 90.2640 1 831 1 chr3B.!!$F1 830
4 TraesCS3B01G172200 chr3D 121341188 121342763 1575 False 2342.0 2342 93.5100 1 1578 1 chr3D.!!$F2 1577
5 TraesCS3B01G172200 chr3D 121268045 121268860 815 False 1062.0 1062 90.1580 12 831 1 chr3D.!!$F1 819
6 TraesCS3B01G172200 chr3A 127858144 127859992 1848 False 1240.5 2261 87.9105 1 1956 2 chr3A.!!$F3 1955
7 TraesCS3B01G172200 chr1D 465902353 465903906 1553 False 2239.0 2239 92.6230 1 1573 1 chr1D.!!$F2 1572
8 TraesCS3B01G172200 chr1D 341029185 341029935 750 False 1098.0 1098 92.9800 1 755 1 chr1D.!!$F1 754
9 TraesCS3B01G172200 chr1B 642700692 642702225 1533 False 2082.0 2082 91.0410 1 1573 1 chr1B.!!$F1 1572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 574 0.250901 ATGTCGCCCTGGAATATGGC 60.251 55.0 0.0 0.0 41.85 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 2507 0.03309 TGAGCAGCTGTGTGTGAGAG 59.967 55.0 16.64 0.0 0.0 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 253 4.862092 CTCGACGCTCCGCATGCT 62.862 66.667 17.13 0.00 0.00 3.79
531 532 2.591715 GCAGACCGTGTTGTGGCT 60.592 61.111 0.00 0.00 0.00 4.75
573 574 0.250901 ATGTCGCCCTGGAATATGGC 60.251 55.000 0.00 0.00 41.85 4.40
909 929 0.307146 GTGCCGTACTAGGACGCTAG 59.693 60.000 22.52 9.87 41.56 3.42
931 951 6.478512 AGCTCTTTTCCTACTATCTTCCTG 57.521 41.667 0.00 0.00 0.00 3.86
976 996 1.000618 AGAACCCTTCGAACTCGGAAC 59.999 52.381 3.58 0.71 40.29 3.62
1041 1061 1.174783 GGAGGAGACTGCTGTCGTTA 58.825 55.000 16.87 0.00 46.74 3.18
1061 1081 2.506217 GCGATGCGAGACGGACAA 60.506 61.111 0.00 0.00 0.00 3.18
1224 1244 2.036098 CTGATGCACCAGGCCCAA 59.964 61.111 0.00 0.00 43.89 4.12
1307 1344 1.517832 CGGAAGTGCGGGAGAAGAT 59.482 57.895 0.00 0.00 0.00 2.40
1501 1541 0.926174 GAGATGCTACGTGACGAGCG 60.926 60.000 13.70 0.00 41.83 5.03
1509 1549 2.261671 GTGACGAGCGATGGGTGT 59.738 61.111 0.00 0.00 0.00 4.16
1515 1555 1.591703 GAGCGATGGGTGTCAGACA 59.408 57.895 0.00 0.00 0.00 3.41
1536 1579 1.212616 GATCGATTCGTCCAGCTTGG 58.787 55.000 5.89 0.00 39.43 3.61
1544 1587 2.033911 TCCAGCTTGGCATTGCGA 59.966 55.556 1.91 0.00 37.47 5.10
1578 1629 4.424061 TCAATTCTTCTTGACATTGCCG 57.576 40.909 0.00 0.00 30.34 5.69
1580 1631 4.278170 TCAATTCTTCTTGACATTGCCGTT 59.722 37.500 0.00 0.00 30.34 4.44
1581 1632 3.624326 TTCTTCTTGACATTGCCGTTG 57.376 42.857 0.00 0.00 0.00 4.10
1582 1633 2.844946 TCTTCTTGACATTGCCGTTGA 58.155 42.857 0.00 0.00 0.00 3.18
1583 1634 2.807967 TCTTCTTGACATTGCCGTTGAG 59.192 45.455 0.00 0.00 0.00 3.02
1584 1635 2.254546 TCTTGACATTGCCGTTGAGT 57.745 45.000 0.00 0.00 0.00 3.41
1585 1636 3.394674 TCTTGACATTGCCGTTGAGTA 57.605 42.857 0.00 0.00 0.00 2.59
1586 1637 3.937814 TCTTGACATTGCCGTTGAGTAT 58.062 40.909 0.00 0.00 0.00 2.12
1587 1638 4.323417 TCTTGACATTGCCGTTGAGTATT 58.677 39.130 0.00 0.00 0.00 1.89
1588 1639 5.483811 TCTTGACATTGCCGTTGAGTATTA 58.516 37.500 0.00 0.00 0.00 0.98
1589 1640 5.350365 TCTTGACATTGCCGTTGAGTATTAC 59.650 40.000 0.00 0.00 0.00 1.89
1590 1641 4.827692 TGACATTGCCGTTGAGTATTACT 58.172 39.130 0.00 0.00 0.00 2.24
1591 1642 4.868171 TGACATTGCCGTTGAGTATTACTC 59.132 41.667 15.57 15.57 45.26 2.59
1592 1643 4.189231 ACATTGCCGTTGAGTATTACTCC 58.811 43.478 18.81 5.86 44.44 3.85
1593 1644 2.973694 TGCCGTTGAGTATTACTCCC 57.026 50.000 18.81 9.98 44.44 4.30
1594 1645 2.463752 TGCCGTTGAGTATTACTCCCT 58.536 47.619 18.81 0.00 44.44 4.20
1595 1646 2.429610 TGCCGTTGAGTATTACTCCCTC 59.570 50.000 18.81 9.60 44.44 4.30
1596 1647 2.223994 GCCGTTGAGTATTACTCCCTCC 60.224 54.545 18.81 5.55 44.44 4.30
1597 1648 2.034305 CCGTTGAGTATTACTCCCTCCG 59.966 54.545 18.81 14.55 44.44 4.63
1598 1649 2.686915 CGTTGAGTATTACTCCCTCCGT 59.313 50.000 18.81 0.00 44.44 4.69
1599 1650 3.243002 CGTTGAGTATTACTCCCTCCGTC 60.243 52.174 18.81 3.74 44.44 4.79
1600 1651 3.947612 TGAGTATTACTCCCTCCGTCT 57.052 47.619 18.81 0.00 44.44 4.18
1601 1652 3.818180 TGAGTATTACTCCCTCCGTCTC 58.182 50.000 18.81 0.00 44.44 3.36
1602 1653 2.807392 GAGTATTACTCCCTCCGTCTCG 59.193 54.545 12.06 0.00 39.28 4.04
1603 1654 2.437281 AGTATTACTCCCTCCGTCTCGA 59.563 50.000 0.00 0.00 0.00 4.04
1604 1655 2.431954 ATTACTCCCTCCGTCTCGAA 57.568 50.000 0.00 0.00 0.00 3.71
1605 1656 2.205022 TTACTCCCTCCGTCTCGAAA 57.795 50.000 0.00 0.00 0.00 3.46
1606 1657 2.431954 TACTCCCTCCGTCTCGAAAT 57.568 50.000 0.00 0.00 0.00 2.17
1607 1658 1.558233 ACTCCCTCCGTCTCGAAATT 58.442 50.000 0.00 0.00 0.00 1.82
1608 1659 1.477295 ACTCCCTCCGTCTCGAAATTC 59.523 52.381 0.00 0.00 0.00 2.17
1609 1660 1.751924 CTCCCTCCGTCTCGAAATTCT 59.248 52.381 0.00 0.00 0.00 2.40
1610 1661 2.166664 CTCCCTCCGTCTCGAAATTCTT 59.833 50.000 0.00 0.00 0.00 2.52
1611 1662 2.094182 TCCCTCCGTCTCGAAATTCTTG 60.094 50.000 0.00 0.00 0.00 3.02
1612 1663 2.353803 CCCTCCGTCTCGAAATTCTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1613 1664 2.924290 CCTCCGTCTCGAAATTCTTGTC 59.076 50.000 0.00 0.00 0.00 3.18
1614 1665 3.367498 CCTCCGTCTCGAAATTCTTGTCT 60.367 47.826 0.00 0.00 0.00 3.41
1615 1666 4.238514 CTCCGTCTCGAAATTCTTGTCTT 58.761 43.478 0.00 0.00 0.00 3.01
1616 1667 5.381174 TCCGTCTCGAAATTCTTGTCTTA 57.619 39.130 0.00 0.00 0.00 2.10
1617 1668 5.399858 TCCGTCTCGAAATTCTTGTCTTAG 58.600 41.667 0.00 0.00 0.00 2.18
1618 1669 5.182570 TCCGTCTCGAAATTCTTGTCTTAGA 59.817 40.000 0.00 0.00 0.00 2.10
1619 1670 6.037098 CCGTCTCGAAATTCTTGTCTTAGAT 58.963 40.000 0.00 0.00 0.00 1.98
1620 1671 6.531948 CCGTCTCGAAATTCTTGTCTTAGATT 59.468 38.462 0.00 0.00 0.00 2.40
1621 1672 7.253817 CCGTCTCGAAATTCTTGTCTTAGATTC 60.254 40.741 0.00 0.00 0.00 2.52
1622 1673 7.512272 CGTCTCGAAATTCTTGTCTTAGATTCG 60.512 40.741 5.78 5.78 37.71 3.34
1623 1674 7.273815 GTCTCGAAATTCTTGTCTTAGATTCGT 59.726 37.037 10.33 0.00 37.65 3.85
1624 1675 7.485277 TCTCGAAATTCTTGTCTTAGATTCGTC 59.515 37.037 10.33 0.00 37.65 4.20
1625 1676 7.313646 TCGAAATTCTTGTCTTAGATTCGTCT 58.686 34.615 10.33 0.00 37.65 4.18
1626 1677 8.456471 TCGAAATTCTTGTCTTAGATTCGTCTA 58.544 33.333 10.33 0.00 37.65 2.59
1627 1678 8.738554 CGAAATTCTTGTCTTAGATTCGTCTAG 58.261 37.037 4.38 0.00 34.42 2.43
1628 1679 9.575783 GAAATTCTTGTCTTAGATTCGTCTAGT 57.424 33.333 0.00 0.00 0.00 2.57
1629 1680 9.930693 AAATTCTTGTCTTAGATTCGTCTAGTT 57.069 29.630 0.00 0.00 0.00 2.24
1633 1684 8.622157 TCTTGTCTTAGATTCGTCTAGTTATGG 58.378 37.037 0.00 0.00 0.00 2.74
1634 1685 8.515695 TTGTCTTAGATTCGTCTAGTTATGGA 57.484 34.615 0.00 0.00 0.00 3.41
1635 1686 8.693120 TGTCTTAGATTCGTCTAGTTATGGAT 57.307 34.615 0.00 0.00 0.00 3.41
1636 1687 8.568794 TGTCTTAGATTCGTCTAGTTATGGATG 58.431 37.037 0.00 0.00 0.00 3.51
1637 1688 8.569641 GTCTTAGATTCGTCTAGTTATGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
1638 1689 9.788889 TCTTAGATTCGTCTAGTTATGGATGTA 57.211 33.333 0.00 0.00 0.00 2.29
1641 1692 8.871629 AGATTCGTCTAGTTATGGATGTATCT 57.128 34.615 0.00 0.00 36.14 1.98
1642 1693 9.961264 AGATTCGTCTAGTTATGGATGTATCTA 57.039 33.333 0.00 0.00 37.89 1.98
1646 1697 8.459635 TCGTCTAGTTATGGATGTATCTAATGC 58.540 37.037 0.00 0.00 0.00 3.56
1647 1698 8.462811 CGTCTAGTTATGGATGTATCTAATGCT 58.537 37.037 0.00 0.00 0.00 3.79
1655 1706 8.613060 ATGGATGTATCTAATGCTAAAGTGTG 57.387 34.615 0.00 0.00 0.00 3.82
1656 1707 7.791029 TGGATGTATCTAATGCTAAAGTGTGA 58.209 34.615 0.00 0.00 0.00 3.58
1657 1708 7.710907 TGGATGTATCTAATGCTAAAGTGTGAC 59.289 37.037 0.00 0.00 0.00 3.67
1658 1709 7.928706 GGATGTATCTAATGCTAAAGTGTGACT 59.071 37.037 0.00 0.00 0.00 3.41
1659 1710 9.319143 GATGTATCTAATGCTAAAGTGTGACTT 57.681 33.333 0.00 0.00 40.80 3.01
1660 1711 8.479313 TGTATCTAATGCTAAAGTGTGACTTG 57.521 34.615 0.00 0.00 38.66 3.16
1661 1712 8.311109 TGTATCTAATGCTAAAGTGTGACTTGA 58.689 33.333 0.00 0.00 38.66 3.02
1662 1713 9.319143 GTATCTAATGCTAAAGTGTGACTTGAT 57.681 33.333 0.00 0.00 38.66 2.57
1664 1715 8.703604 TCTAATGCTAAAGTGTGACTTGATAC 57.296 34.615 0.00 0.00 38.66 2.24
1665 1716 8.311109 TCTAATGCTAAAGTGTGACTTGATACA 58.689 33.333 0.00 0.00 38.66 2.29
1666 1717 7.928307 AATGCTAAAGTGTGACTTGATACAT 57.072 32.000 0.00 0.00 38.66 2.29
1667 1718 6.968131 TGCTAAAGTGTGACTTGATACATC 57.032 37.500 0.00 0.00 38.66 3.06
1668 1719 5.576774 TGCTAAAGTGTGACTTGATACATCG 59.423 40.000 0.00 0.00 38.66 3.84
1669 1720 5.577164 GCTAAAGTGTGACTTGATACATCGT 59.423 40.000 0.00 0.00 38.66 3.73
1670 1721 6.750501 GCTAAAGTGTGACTTGATACATCGTA 59.249 38.462 0.00 0.00 38.66 3.43
1671 1722 7.435488 GCTAAAGTGTGACTTGATACATCGTAT 59.565 37.037 0.00 0.00 38.66 3.06
1672 1723 9.302345 CTAAAGTGTGACTTGATACATCGTATT 57.698 33.333 0.00 0.00 38.66 1.89
1673 1724 8.547967 AAAGTGTGACTTGATACATCGTATTT 57.452 30.769 0.00 0.00 38.66 1.40
1674 1725 9.647797 AAAGTGTGACTTGATACATCGTATTTA 57.352 29.630 0.00 0.00 38.66 1.40
1675 1726 8.858003 AGTGTGACTTGATACATCGTATTTAG 57.142 34.615 0.00 0.00 0.00 1.85
1676 1727 8.683615 AGTGTGACTTGATACATCGTATTTAGA 58.316 33.333 0.00 0.00 0.00 2.10
1677 1728 9.464714 GTGTGACTTGATACATCGTATTTAGAT 57.535 33.333 0.00 0.00 0.00 1.98
1704 1755 9.908152 AAATTTAAGACAAGAATTTTAGGACGG 57.092 29.630 0.00 0.00 31.00 4.79
1705 1756 8.857694 ATTTAAGACAAGAATTTTAGGACGGA 57.142 30.769 0.00 0.00 0.00 4.69
1706 1757 7.662604 TTAAGACAAGAATTTTAGGACGGAC 57.337 36.000 0.00 0.00 0.00 4.79
1709 1760 3.007182 ACAAGAATTTTAGGACGGACGGA 59.993 43.478 0.00 0.00 0.00 4.69
1731 1782 7.014038 ACGGAGTACTAACATTCTTCGGAATAT 59.986 37.037 0.00 0.00 40.30 1.28
1764 1817 8.499288 TTGAAATTTGTTTTTATCTAGGGGGT 57.501 30.769 0.00 0.00 0.00 4.95
1765 1818 9.603189 TTGAAATTTGTTTTTATCTAGGGGGTA 57.397 29.630 0.00 0.00 0.00 3.69
1766 1819 9.777008 TGAAATTTGTTTTTATCTAGGGGGTAT 57.223 29.630 0.00 0.00 0.00 2.73
1791 1845 8.442632 TCTATGTTGCATTAGAAAGAGATTGG 57.557 34.615 0.00 0.00 0.00 3.16
1794 1848 3.966979 TGCATTAGAAAGAGATTGGGCA 58.033 40.909 0.00 0.00 0.00 5.36
1795 1849 4.539726 TGCATTAGAAAGAGATTGGGCAT 58.460 39.130 0.00 0.00 0.00 4.40
1796 1850 4.581824 TGCATTAGAAAGAGATTGGGCATC 59.418 41.667 0.00 0.00 0.00 3.91
1813 1867 4.571984 GGGCATCATTCAAATTTTACAGCC 59.428 41.667 0.00 0.00 36.57 4.85
1816 1870 6.316890 GGCATCATTCAAATTTTACAGCCAAT 59.683 34.615 0.00 0.00 37.23 3.16
1851 1905 4.989279 ATGTATGAATGTTTCAGGCACC 57.011 40.909 0.00 0.00 43.98 5.01
1872 1943 4.137543 CCAATGTATGCCCTCCTCTAAAC 58.862 47.826 0.00 0.00 0.00 2.01
1874 1945 3.906720 TGTATGCCCTCCTCTAAACAC 57.093 47.619 0.00 0.00 0.00 3.32
1879 1950 1.550130 CCCTCCTCTAAACACCGCCA 61.550 60.000 0.00 0.00 0.00 5.69
1882 1953 0.034337 TCCTCTAAACACCGCCACAC 59.966 55.000 0.00 0.00 0.00 3.82
1885 1956 1.944024 CTCTAAACACCGCCACACAAA 59.056 47.619 0.00 0.00 0.00 2.83
1924 1995 1.360192 GCAGCTGCACTTTTCGGTT 59.640 52.632 33.36 0.00 41.59 4.44
1938 2009 2.935955 GGTTGAACCGAGCACACG 59.064 61.111 0.00 0.00 0.00 4.49
1956 2027 1.067416 GCACGCCACTATCGGATGA 59.933 57.895 0.00 0.00 0.00 2.92
1957 2028 0.941463 GCACGCCACTATCGGATGAG 60.941 60.000 0.00 0.00 0.00 2.90
1958 2029 0.668535 CACGCCACTATCGGATGAGA 59.331 55.000 0.00 0.00 0.00 3.27
1959 2030 0.955178 ACGCCACTATCGGATGAGAG 59.045 55.000 0.00 0.00 39.38 3.20
1960 2031 1.239347 CGCCACTATCGGATGAGAGA 58.761 55.000 0.00 0.00 36.91 3.10
1961 2032 1.198867 CGCCACTATCGGATGAGAGAG 59.801 57.143 0.00 0.00 36.91 3.20
1962 2033 2.509569 GCCACTATCGGATGAGAGAGA 58.490 52.381 0.00 0.00 36.91 3.10
1963 2034 2.487762 GCCACTATCGGATGAGAGAGAG 59.512 54.545 0.00 0.00 36.91 3.20
1964 2035 3.808971 GCCACTATCGGATGAGAGAGAGA 60.809 52.174 0.00 0.00 36.91 3.10
1965 2036 4.002982 CCACTATCGGATGAGAGAGAGAG 58.997 52.174 0.00 0.00 36.91 3.20
1966 2037 4.262851 CCACTATCGGATGAGAGAGAGAGA 60.263 50.000 0.00 0.00 36.91 3.10
1967 2038 4.931601 CACTATCGGATGAGAGAGAGAGAG 59.068 50.000 0.00 0.00 36.91 3.20
1968 2039 4.838423 ACTATCGGATGAGAGAGAGAGAGA 59.162 45.833 0.00 0.00 36.91 3.10
1969 2040 3.751479 TCGGATGAGAGAGAGAGAGAG 57.249 52.381 0.00 0.00 0.00 3.20
1970 2041 3.304829 TCGGATGAGAGAGAGAGAGAGA 58.695 50.000 0.00 0.00 0.00 3.10
1971 2042 3.321968 TCGGATGAGAGAGAGAGAGAGAG 59.678 52.174 0.00 0.00 0.00 3.20
1972 2043 3.321968 CGGATGAGAGAGAGAGAGAGAGA 59.678 52.174 0.00 0.00 0.00 3.10
1973 2044 4.560311 CGGATGAGAGAGAGAGAGAGAGAG 60.560 54.167 0.00 0.00 0.00 3.20
1974 2045 4.590647 GGATGAGAGAGAGAGAGAGAGAGA 59.409 50.000 0.00 0.00 0.00 3.10
1975 2046 5.279406 GGATGAGAGAGAGAGAGAGAGAGAG 60.279 52.000 0.00 0.00 0.00 3.20
1976 2047 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
1977 2048 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
1978 2049 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
1979 2050 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2316 2387 2.689034 GGGGAGGGTGAGGGTGAG 60.689 72.222 0.00 0.00 0.00 3.51
2317 2388 2.689034 GGGAGGGTGAGGGTGAGG 60.689 72.222 0.00 0.00 0.00 3.86
2318 2389 2.689034 GGAGGGTGAGGGTGAGGG 60.689 72.222 0.00 0.00 0.00 4.30
2319 2390 2.689034 GAGGGTGAGGGTGAGGGG 60.689 72.222 0.00 0.00 0.00 4.79
2320 2391 4.354943 AGGGTGAGGGTGAGGGGG 62.355 72.222 0.00 0.00 0.00 5.40
2335 2406 4.179599 GGGGAGGGGGAGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
2336 2407 3.036959 GGGAGGGGGAGAGGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
2337 2408 2.612251 GGAGGGGGAGAGGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
2338 2409 2.015726 GGAGGGGGAGAGGGAGAGA 61.016 68.421 0.00 0.00 0.00 3.10
2339 2410 1.541672 GAGGGGGAGAGGGAGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
2340 2411 0.996762 GAGGGGGAGAGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2341 2412 0.998945 AGGGGGAGAGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
2342 2413 0.996762 GGGGGAGAGGGAGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
2343 2414 0.478507 GGGGAGAGGGAGAGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
2344 2415 0.478507 GGGAGAGGGAGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
2345 2416 0.178990 GGAGAGGGAGAGAGAGAGGC 60.179 65.000 0.00 0.00 0.00 4.70
2346 2417 0.178990 GAGAGGGAGAGAGAGAGGCC 60.179 65.000 0.00 0.00 0.00 5.19
2347 2418 1.152546 GAGGGAGAGAGAGAGGCCC 60.153 68.421 0.00 0.00 39.12 5.80
2348 2419 2.123033 GGGAGAGAGAGAGGCCCC 60.123 72.222 0.00 0.00 32.50 5.80
2349 2420 2.520741 GGAGAGAGAGAGGCCCCG 60.521 72.222 0.00 0.00 0.00 5.73
2350 2421 2.598467 GAGAGAGAGAGGCCCCGA 59.402 66.667 0.00 0.00 0.00 5.14
2351 2422 1.152830 GAGAGAGAGAGGCCCCGAT 59.847 63.158 0.00 0.00 0.00 4.18
2352 2423 1.152567 AGAGAGAGAGGCCCCGATG 60.153 63.158 0.00 0.00 0.00 3.84
2353 2424 1.152652 GAGAGAGAGGCCCCGATGA 60.153 63.158 0.00 0.00 0.00 2.92
2354 2425 1.152567 AGAGAGAGGCCCCGATGAG 60.153 63.158 0.00 0.00 0.00 2.90
2355 2426 2.841988 AGAGAGGCCCCGATGAGC 60.842 66.667 0.00 0.00 0.00 4.26
2356 2427 3.157252 GAGAGGCCCCGATGAGCA 61.157 66.667 0.00 0.00 0.00 4.26
2357 2428 2.447379 AGAGGCCCCGATGAGCAT 60.447 61.111 0.00 0.00 0.00 3.79
2358 2429 2.049627 GAGAGGCCCCGATGAGCATT 62.050 60.000 0.00 0.00 0.00 3.56
2359 2430 0.764369 AGAGGCCCCGATGAGCATTA 60.764 55.000 0.00 0.00 0.00 1.90
2360 2431 0.321122 GAGGCCCCGATGAGCATTAG 60.321 60.000 0.00 0.00 0.00 1.73
2361 2432 1.968540 GGCCCCGATGAGCATTAGC 60.969 63.158 0.00 0.00 42.56 3.09
2362 2433 1.968540 GCCCCGATGAGCATTAGCC 60.969 63.158 0.00 0.00 43.56 3.93
2363 2434 1.757306 CCCCGATGAGCATTAGCCT 59.243 57.895 0.00 0.00 43.56 4.58
2364 2435 0.604780 CCCCGATGAGCATTAGCCTG 60.605 60.000 0.00 0.00 43.56 4.85
2365 2436 0.604780 CCCGATGAGCATTAGCCTGG 60.605 60.000 0.00 0.00 43.56 4.45
2366 2437 0.107456 CCGATGAGCATTAGCCTGGT 59.893 55.000 0.00 0.00 43.56 4.00
2367 2438 1.344438 CCGATGAGCATTAGCCTGGTA 59.656 52.381 0.00 0.00 43.56 3.25
2368 2439 2.224281 CCGATGAGCATTAGCCTGGTAA 60.224 50.000 0.00 0.00 43.56 2.85
2369 2440 3.557898 CCGATGAGCATTAGCCTGGTAAT 60.558 47.826 0.00 0.00 43.56 1.89
2370 2441 4.322725 CCGATGAGCATTAGCCTGGTAATA 60.323 45.833 1.61 0.00 43.56 0.98
2371 2442 5.237815 CGATGAGCATTAGCCTGGTAATAA 58.762 41.667 1.61 0.00 43.56 1.40
2372 2443 5.700832 CGATGAGCATTAGCCTGGTAATAAA 59.299 40.000 1.61 0.00 43.56 1.40
2373 2444 6.204688 CGATGAGCATTAGCCTGGTAATAAAA 59.795 38.462 1.61 0.00 43.56 1.52
2374 2445 7.094634 CGATGAGCATTAGCCTGGTAATAAAAT 60.095 37.037 1.61 0.00 43.56 1.82
2375 2446 7.896383 TGAGCATTAGCCTGGTAATAAAATT 57.104 32.000 1.61 0.00 43.56 1.82
2376 2447 8.305046 TGAGCATTAGCCTGGTAATAAAATTT 57.695 30.769 1.61 0.00 43.56 1.82
2377 2448 9.415008 TGAGCATTAGCCTGGTAATAAAATTTA 57.585 29.630 1.61 0.00 43.56 1.40
2378 2449 9.899226 GAGCATTAGCCTGGTAATAAAATTTAG 57.101 33.333 1.61 0.00 43.56 1.85
2379 2450 8.860088 AGCATTAGCCTGGTAATAAAATTTAGG 58.140 33.333 1.61 0.00 43.56 2.69
2385 2456 7.970384 GCCTGGTAATAAAATTTAGGCAAAAC 58.030 34.615 17.25 0.45 46.35 2.43
2386 2457 7.065324 GCCTGGTAATAAAATTTAGGCAAAACC 59.935 37.037 17.25 8.34 46.35 3.27
2387 2458 7.276878 CCTGGTAATAAAATTTAGGCAAAACCG 59.723 37.037 0.00 0.00 46.52 4.44
2388 2459 7.668492 TGGTAATAAAATTTAGGCAAAACCGT 58.332 30.769 0.00 0.00 46.52 4.83
2389 2460 7.813627 TGGTAATAAAATTTAGGCAAAACCGTC 59.186 33.333 0.00 0.00 46.52 4.79
2390 2461 7.276218 GGTAATAAAATTTAGGCAAAACCGTCC 59.724 37.037 0.00 0.00 46.52 4.79
2391 2462 3.671008 AAATTTAGGCAAAACCGTCCC 57.329 42.857 0.00 0.00 46.52 4.46
2392 2463 1.552578 ATTTAGGCAAAACCGTCCCC 58.447 50.000 0.00 0.00 46.52 4.81
2393 2464 0.185416 TTTAGGCAAAACCGTCCCCA 59.815 50.000 0.00 0.00 46.52 4.96
2394 2465 0.537828 TTAGGCAAAACCGTCCCCAC 60.538 55.000 0.00 0.00 46.52 4.61
2395 2466 1.420532 TAGGCAAAACCGTCCCCACT 61.421 55.000 0.00 0.00 46.52 4.00
2396 2467 2.265904 GGCAAAACCGTCCCCACTC 61.266 63.158 0.00 0.00 0.00 3.51
2397 2468 2.265904 GCAAAACCGTCCCCACTCC 61.266 63.158 0.00 0.00 0.00 3.85
2398 2469 1.964373 CAAAACCGTCCCCACTCCG 60.964 63.158 0.00 0.00 0.00 4.63
2399 2470 3.186656 AAAACCGTCCCCACTCCGG 62.187 63.158 0.00 0.00 46.93 5.14
2409 2480 3.953775 CACTCCGGCCACCTGGTT 61.954 66.667 2.24 0.00 37.57 3.67
2410 2481 3.637273 ACTCCGGCCACCTGGTTC 61.637 66.667 2.24 0.00 37.57 3.62
2411 2482 3.636231 CTCCGGCCACCTGGTTCA 61.636 66.667 2.24 0.00 37.57 3.18
2412 2483 3.172106 TCCGGCCACCTGGTTCAA 61.172 61.111 2.24 0.00 37.57 2.69
2413 2484 2.203422 CCGGCCACCTGGTTCAAA 60.203 61.111 2.24 0.00 37.57 2.69
2414 2485 2.561037 CCGGCCACCTGGTTCAAAC 61.561 63.158 2.24 0.00 37.57 2.93
2438 2509 2.774439 TTTTGAAACGCCTCTTGCTC 57.226 45.000 0.00 0.00 38.05 4.26
2439 2510 1.967319 TTTGAAACGCCTCTTGCTCT 58.033 45.000 0.00 0.00 38.05 4.09
2440 2511 1.512926 TTGAAACGCCTCTTGCTCTC 58.487 50.000 0.00 0.00 38.05 3.20
2441 2512 0.392706 TGAAACGCCTCTTGCTCTCA 59.607 50.000 0.00 0.00 38.05 3.27
2442 2513 0.793250 GAAACGCCTCTTGCTCTCAC 59.207 55.000 0.00 0.00 38.05 3.51
2443 2514 0.106708 AAACGCCTCTTGCTCTCACA 59.893 50.000 0.00 0.00 38.05 3.58
2444 2515 0.601311 AACGCCTCTTGCTCTCACAC 60.601 55.000 0.00 0.00 38.05 3.82
2445 2516 1.005748 CGCCTCTTGCTCTCACACA 60.006 57.895 0.00 0.00 38.05 3.72
2446 2517 1.287730 CGCCTCTTGCTCTCACACAC 61.288 60.000 0.00 0.00 38.05 3.82
2447 2518 0.250038 GCCTCTTGCTCTCACACACA 60.250 55.000 0.00 0.00 36.87 3.72
2448 2519 1.793258 CCTCTTGCTCTCACACACAG 58.207 55.000 0.00 0.00 0.00 3.66
2449 2520 1.146637 CTCTTGCTCTCACACACAGC 58.853 55.000 0.00 0.00 0.00 4.40
2450 2521 0.755079 TCTTGCTCTCACACACAGCT 59.245 50.000 0.00 0.00 34.03 4.24
2451 2522 0.866427 CTTGCTCTCACACACAGCTG 59.134 55.000 13.48 13.48 34.03 4.24
2452 2523 1.162181 TTGCTCTCACACACAGCTGC 61.162 55.000 15.27 0.00 34.03 5.25
2453 2524 1.301558 GCTCTCACACACAGCTGCT 60.302 57.895 15.27 0.00 0.00 4.24
2454 2525 1.290491 GCTCTCACACACAGCTGCTC 61.290 60.000 15.27 0.00 0.00 4.26
2455 2526 0.033090 CTCTCACACACAGCTGCTCA 59.967 55.000 15.27 0.00 0.00 4.26
2456 2527 0.683412 TCTCACACACAGCTGCTCAT 59.317 50.000 15.27 0.00 0.00 2.90
2457 2528 0.796927 CTCACACACAGCTGCTCATG 59.203 55.000 15.27 7.10 0.00 3.07
2458 2529 0.393820 TCACACACAGCTGCTCATGA 59.606 50.000 15.27 10.36 0.00 3.07
2459 2530 1.002773 TCACACACAGCTGCTCATGAT 59.997 47.619 15.27 0.00 0.00 2.45
2460 2531 1.810755 CACACACAGCTGCTCATGATT 59.189 47.619 15.27 0.00 0.00 2.57
2461 2532 2.228103 CACACACAGCTGCTCATGATTT 59.772 45.455 15.27 0.00 0.00 2.17
2462 2533 2.486982 ACACACAGCTGCTCATGATTTC 59.513 45.455 15.27 0.00 0.00 2.17
2463 2534 2.747989 CACACAGCTGCTCATGATTTCT 59.252 45.455 15.27 0.00 0.00 2.52
2464 2535 3.008330 ACACAGCTGCTCATGATTTCTC 58.992 45.455 15.27 0.00 0.00 2.87
2465 2536 2.355132 CACAGCTGCTCATGATTTCTCC 59.645 50.000 15.27 0.00 0.00 3.71
2466 2537 2.239150 ACAGCTGCTCATGATTTCTCCT 59.761 45.455 15.27 0.00 0.00 3.69
2467 2538 2.873472 CAGCTGCTCATGATTTCTCCTC 59.127 50.000 0.00 0.00 0.00 3.71
2468 2539 2.158784 AGCTGCTCATGATTTCTCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
2469 2540 2.848691 CTGCTCATGATTTCTCCTCCC 58.151 52.381 0.00 0.00 0.00 4.30
2470 2541 1.492176 TGCTCATGATTTCTCCTCCCC 59.508 52.381 0.00 0.00 0.00 4.81
2471 2542 1.202867 GCTCATGATTTCTCCTCCCCC 60.203 57.143 0.00 0.00 0.00 5.40
2472 2543 2.416638 CTCATGATTTCTCCTCCCCCT 58.583 52.381 0.00 0.00 0.00 4.79
2473 2544 2.371510 CTCATGATTTCTCCTCCCCCTC 59.628 54.545 0.00 0.00 0.00 4.30
2474 2545 1.423161 CATGATTTCTCCTCCCCCTCC 59.577 57.143 0.00 0.00 0.00 4.30
2475 2546 0.421495 TGATTTCTCCTCCCCCTCCA 59.579 55.000 0.00 0.00 0.00 3.86
2476 2547 1.011293 TGATTTCTCCTCCCCCTCCAT 59.989 52.381 0.00 0.00 0.00 3.41
2477 2548 2.139382 GATTTCTCCTCCCCCTCCATT 58.861 52.381 0.00 0.00 0.00 3.16
2478 2549 1.596496 TTTCTCCTCCCCCTCCATTC 58.404 55.000 0.00 0.00 0.00 2.67
2479 2550 0.421495 TTCTCCTCCCCCTCCATTCA 59.579 55.000 0.00 0.00 0.00 2.57
2480 2551 0.326618 TCTCCTCCCCCTCCATTCAC 60.327 60.000 0.00 0.00 0.00 3.18
2481 2552 1.689233 TCCTCCCCCTCCATTCACG 60.689 63.158 0.00 0.00 0.00 4.35
2482 2553 1.689233 CCTCCCCCTCCATTCACGA 60.689 63.158 0.00 0.00 0.00 4.35
2483 2554 1.522569 CTCCCCCTCCATTCACGAC 59.477 63.158 0.00 0.00 0.00 4.34
2484 2555 2.186903 CCCCCTCCATTCACGACG 59.813 66.667 0.00 0.00 0.00 5.12
2485 2556 2.186903 CCCCTCCATTCACGACGG 59.813 66.667 0.00 0.00 0.00 4.79
2486 2557 2.511600 CCCTCCATTCACGACGGC 60.512 66.667 0.00 0.00 0.00 5.68
2487 2558 2.579201 CCTCCATTCACGACGGCT 59.421 61.111 0.00 0.00 0.00 5.52
2488 2559 1.079127 CCTCCATTCACGACGGCTT 60.079 57.895 0.00 0.00 0.00 4.35
2489 2560 1.361668 CCTCCATTCACGACGGCTTG 61.362 60.000 0.00 0.00 0.00 4.01
2490 2561 1.970917 CTCCATTCACGACGGCTTGC 61.971 60.000 0.00 0.00 0.00 4.01
2491 2562 2.096406 CATTCACGACGGCTTGCG 59.904 61.111 0.00 0.00 0.00 4.85
2492 2563 3.788766 ATTCACGACGGCTTGCGC 61.789 61.111 0.00 0.00 0.00 6.09
2500 2571 4.520846 CGGCTTGCGCGGTGATTC 62.521 66.667 8.83 0.00 36.88 2.52
2501 2572 4.520846 GGCTTGCGCGGTGATTCG 62.521 66.667 8.83 0.00 36.88 3.34
2502 2573 4.520846 GCTTGCGCGGTGATTCGG 62.521 66.667 8.83 0.00 0.00 4.30
2503 2574 3.864686 CTTGCGCGGTGATTCGGG 61.865 66.667 8.83 0.00 44.28 5.14
2507 2578 3.940640 CGCGGTGATTCGGGCATG 61.941 66.667 0.00 0.00 36.38 4.06
2508 2579 3.585990 GCGGTGATTCGGGCATGG 61.586 66.667 0.00 0.00 0.00 3.66
2509 2580 2.901840 CGGTGATTCGGGCATGGG 60.902 66.667 0.00 0.00 0.00 4.00
2510 2581 2.275418 GGTGATTCGGGCATGGGT 59.725 61.111 0.00 0.00 0.00 4.51
2511 2582 1.379843 GGTGATTCGGGCATGGGTT 60.380 57.895 0.00 0.00 0.00 4.11
2512 2583 1.384222 GGTGATTCGGGCATGGGTTC 61.384 60.000 0.00 0.00 0.00 3.62
2513 2584 1.451207 TGATTCGGGCATGGGTTCG 60.451 57.895 0.00 0.00 0.00 3.95
2514 2585 1.451387 GATTCGGGCATGGGTTCGT 60.451 57.895 0.00 0.00 0.00 3.85
2515 2586 1.436983 GATTCGGGCATGGGTTCGTC 61.437 60.000 0.00 0.00 0.00 4.20
2516 2587 3.943479 TTCGGGCATGGGTTCGTCG 62.943 63.158 0.00 0.00 0.00 5.12
2517 2588 4.752879 CGGGCATGGGTTCGTCGT 62.753 66.667 0.00 0.00 0.00 4.34
2518 2589 2.580276 GGGCATGGGTTCGTCGTA 59.420 61.111 0.00 0.00 0.00 3.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
531 532 2.518112 TGCTCAAGGGCAAACGCA 60.518 55.556 0.00 0.00 39.43 5.24
573 574 1.372087 GGCCACAATGGAGAAGCTCG 61.372 60.000 0.00 0.00 40.96 5.03
678 679 0.744414 GTTGAAGGCGATGGCTAGCA 60.744 55.000 18.24 2.97 37.50 3.49
682 683 0.107945 GAGAGTTGAAGGCGATGGCT 60.108 55.000 0.00 0.00 41.24 4.75
909 929 5.053811 GCAGGAAGATAGTAGGAAAAGAGC 58.946 45.833 0.00 0.00 0.00 4.09
931 951 1.883084 CCGATCGTGCCAAGGTAGC 60.883 63.158 15.09 0.00 0.00 3.58
976 996 3.566261 CGCAGCCAGGTACAACTG 58.434 61.111 0.00 0.00 38.21 3.16
1017 1037 0.324275 ACAGCAGTCTCCTCCTCCTC 60.324 60.000 0.00 0.00 0.00 3.71
1018 1038 0.324275 GACAGCAGTCTCCTCCTCCT 60.324 60.000 1.35 0.00 41.64 3.69
1019 1039 1.662438 CGACAGCAGTCTCCTCCTCC 61.662 65.000 7.71 0.00 42.73 4.30
1020 1040 0.963355 ACGACAGCAGTCTCCTCCTC 60.963 60.000 7.71 0.00 42.73 3.71
1021 1041 0.540830 AACGACAGCAGTCTCCTCCT 60.541 55.000 7.71 0.00 42.73 3.69
1022 1042 1.133407 CTAACGACAGCAGTCTCCTCC 59.867 57.143 7.71 0.00 42.73 4.30
1041 1061 3.440415 TCCGTCTCGCATCGCACT 61.440 61.111 0.00 0.00 0.00 4.40
1061 1081 4.057428 GACTGAGCGGCTCCGTGT 62.057 66.667 28.02 21.73 42.09 4.49
1420 1457 2.179517 CTCCTTCTCGCGCGTCTT 59.820 61.111 30.98 0.00 0.00 3.01
1501 1541 2.101415 TCGATCATGTCTGACACCCATC 59.899 50.000 13.50 12.74 33.22 3.51
1509 1549 2.687935 TGGACGAATCGATCATGTCTGA 59.312 45.455 10.55 7.96 35.41 3.27
1515 1555 2.477825 CAAGCTGGACGAATCGATCAT 58.522 47.619 10.55 0.00 0.00 2.45
1536 1579 0.374758 ACATGTCGATGTCGCAATGC 59.625 50.000 13.45 0.00 38.53 3.56
1544 1587 6.808008 AGAAGAATTGAAACATGTCGATGT 57.192 33.333 0.00 0.00 45.24 3.06
1578 1629 3.952967 AGACGGAGGGAGTAATACTCAAC 59.047 47.826 20.57 13.06 46.79 3.18
1580 1631 3.743584 CGAGACGGAGGGAGTAATACTCA 60.744 52.174 20.57 0.00 46.79 3.41
1581 1632 2.807392 CGAGACGGAGGGAGTAATACTC 59.193 54.545 11.79 11.79 44.32 2.59
1582 1633 2.437281 TCGAGACGGAGGGAGTAATACT 59.563 50.000 0.00 0.00 0.00 2.12
1583 1634 2.843701 TCGAGACGGAGGGAGTAATAC 58.156 52.381 0.00 0.00 0.00 1.89
1584 1635 3.565764 TTCGAGACGGAGGGAGTAATA 57.434 47.619 0.00 0.00 0.00 0.98
1585 1636 2.431954 TTCGAGACGGAGGGAGTAAT 57.568 50.000 0.00 0.00 0.00 1.89
1586 1637 2.205022 TTTCGAGACGGAGGGAGTAA 57.795 50.000 0.00 0.00 0.00 2.24
1587 1638 2.431954 ATTTCGAGACGGAGGGAGTA 57.568 50.000 0.00 0.00 0.00 2.59
1588 1639 1.477295 GAATTTCGAGACGGAGGGAGT 59.523 52.381 0.00 0.00 0.00 3.85
1589 1640 1.751924 AGAATTTCGAGACGGAGGGAG 59.248 52.381 0.00 0.00 0.00 4.30
1590 1641 1.848652 AGAATTTCGAGACGGAGGGA 58.151 50.000 0.00 0.00 0.00 4.20
1591 1642 2.271800 CAAGAATTTCGAGACGGAGGG 58.728 52.381 0.00 0.00 0.00 4.30
1592 1643 2.924290 GACAAGAATTTCGAGACGGAGG 59.076 50.000 0.00 0.00 0.00 4.30
1593 1644 3.839293 AGACAAGAATTTCGAGACGGAG 58.161 45.455 0.00 0.00 0.00 4.63
1594 1645 3.936372 AGACAAGAATTTCGAGACGGA 57.064 42.857 0.00 0.00 0.00 4.69
1595 1646 5.399858 TCTAAGACAAGAATTTCGAGACGG 58.600 41.667 0.00 0.00 0.00 4.79
1596 1647 7.512272 CGAATCTAAGACAAGAATTTCGAGACG 60.512 40.741 4.43 0.00 39.00 4.18
1597 1648 7.273815 ACGAATCTAAGACAAGAATTTCGAGAC 59.726 37.037 13.50 0.00 39.00 3.36
1598 1649 7.313646 ACGAATCTAAGACAAGAATTTCGAGA 58.686 34.615 13.50 0.00 39.00 4.04
1599 1650 7.486551 AGACGAATCTAAGACAAGAATTTCGAG 59.513 37.037 13.50 0.00 39.00 4.04
1600 1651 7.313646 AGACGAATCTAAGACAAGAATTTCGA 58.686 34.615 13.50 0.00 39.00 3.71
1601 1652 7.513190 AGACGAATCTAAGACAAGAATTTCG 57.487 36.000 7.64 7.64 40.92 3.46
1602 1653 9.575783 ACTAGACGAATCTAAGACAAGAATTTC 57.424 33.333 0.00 0.00 36.98 2.17
1603 1654 9.930693 AACTAGACGAATCTAAGACAAGAATTT 57.069 29.630 0.00 0.00 36.98 1.82
1607 1658 8.622157 CCATAACTAGACGAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
1608 1659 8.622157 TCCATAACTAGACGAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
1609 1660 8.515695 TCCATAACTAGACGAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
1610 1661 8.568794 CATCCATAACTAGACGAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
1611 1662 8.569641 ACATCCATAACTAGACGAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
1612 1663 8.693120 ACATCCATAACTAGACGAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
1615 1666 9.961264 AGATACATCCATAACTAGACGAATCTA 57.039 33.333 0.00 0.00 36.29 1.98
1616 1667 8.871629 AGATACATCCATAACTAGACGAATCT 57.128 34.615 0.00 0.00 39.15 2.40
1620 1671 8.459635 GCATTAGATACATCCATAACTAGACGA 58.540 37.037 0.00 0.00 0.00 4.20
1621 1672 8.462811 AGCATTAGATACATCCATAACTAGACG 58.537 37.037 0.00 0.00 0.00 4.18
1629 1680 9.710900 CACACTTTAGCATTAGATACATCCATA 57.289 33.333 0.00 0.00 0.00 2.74
1630 1681 8.432013 TCACACTTTAGCATTAGATACATCCAT 58.568 33.333 0.00 0.00 0.00 3.41
1631 1682 7.710907 GTCACACTTTAGCATTAGATACATCCA 59.289 37.037 0.00 0.00 0.00 3.41
1632 1683 7.928706 AGTCACACTTTAGCATTAGATACATCC 59.071 37.037 0.00 0.00 0.00 3.51
1633 1684 8.879342 AGTCACACTTTAGCATTAGATACATC 57.121 34.615 0.00 0.00 0.00 3.06
1634 1685 9.102757 CAAGTCACACTTTAGCATTAGATACAT 57.897 33.333 0.00 0.00 36.03 2.29
1635 1686 8.311109 TCAAGTCACACTTTAGCATTAGATACA 58.689 33.333 0.00 0.00 36.03 2.29
1636 1687 8.703604 TCAAGTCACACTTTAGCATTAGATAC 57.296 34.615 0.00 0.00 36.03 2.24
1638 1689 9.319143 GTATCAAGTCACACTTTAGCATTAGAT 57.681 33.333 0.00 0.00 36.03 1.98
1639 1690 8.311109 TGTATCAAGTCACACTTTAGCATTAGA 58.689 33.333 0.00 0.00 36.03 2.10
1640 1691 8.479313 TGTATCAAGTCACACTTTAGCATTAG 57.521 34.615 0.00 0.00 36.03 1.73
1641 1692 9.098355 GATGTATCAAGTCACACTTTAGCATTA 57.902 33.333 0.00 0.00 36.03 1.90
1642 1693 7.201556 CGATGTATCAAGTCACACTTTAGCATT 60.202 37.037 0.00 0.00 36.03 3.56
1643 1694 6.256539 CGATGTATCAAGTCACACTTTAGCAT 59.743 38.462 0.00 0.00 36.03 3.79
1644 1695 5.576774 CGATGTATCAAGTCACACTTTAGCA 59.423 40.000 0.00 0.00 36.03 3.49
1645 1696 5.577164 ACGATGTATCAAGTCACACTTTAGC 59.423 40.000 0.00 0.00 36.03 3.09
1646 1697 8.858003 ATACGATGTATCAAGTCACACTTTAG 57.142 34.615 0.00 0.00 36.03 1.85
1647 1698 9.647797 AAATACGATGTATCAAGTCACACTTTA 57.352 29.630 0.00 0.00 36.03 1.85
1648 1699 8.547967 AAATACGATGTATCAAGTCACACTTT 57.452 30.769 0.00 0.00 36.03 2.66
1649 1700 9.302345 CTAAATACGATGTATCAAGTCACACTT 57.698 33.333 0.00 0.00 39.39 3.16
1650 1701 8.683615 TCTAAATACGATGTATCAAGTCACACT 58.316 33.333 0.00 0.00 0.00 3.55
1651 1702 8.851960 TCTAAATACGATGTATCAAGTCACAC 57.148 34.615 0.00 0.00 0.00 3.82
1678 1729 9.908152 CCGTCCTAAAATTCTTGTCTTAAATTT 57.092 29.630 0.00 0.00 34.86 1.82
1679 1730 9.292195 TCCGTCCTAAAATTCTTGTCTTAAATT 57.708 29.630 0.00 0.00 0.00 1.82
1680 1731 8.727910 GTCCGTCCTAAAATTCTTGTCTTAAAT 58.272 33.333 0.00 0.00 0.00 1.40
1681 1732 7.095523 CGTCCGTCCTAAAATTCTTGTCTTAAA 60.096 37.037 0.00 0.00 0.00 1.52
1682 1733 6.366877 CGTCCGTCCTAAAATTCTTGTCTTAA 59.633 38.462 0.00 0.00 0.00 1.85
1683 1734 5.865552 CGTCCGTCCTAAAATTCTTGTCTTA 59.134 40.000 0.00 0.00 0.00 2.10
1684 1735 4.689345 CGTCCGTCCTAAAATTCTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
1685 1736 4.243270 CGTCCGTCCTAAAATTCTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
1686 1737 3.370061 CCGTCCGTCCTAAAATTCTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
1687 1738 3.007182 TCCGTCCGTCCTAAAATTCTTGT 59.993 43.478 0.00 0.00 0.00 3.16
1688 1739 3.592059 TCCGTCCGTCCTAAAATTCTTG 58.408 45.455 0.00 0.00 0.00 3.02
1689 1740 3.260128 ACTCCGTCCGTCCTAAAATTCTT 59.740 43.478 0.00 0.00 0.00 2.52
1690 1741 2.830321 ACTCCGTCCGTCCTAAAATTCT 59.170 45.455 0.00 0.00 0.00 2.40
1691 1742 3.242549 ACTCCGTCCGTCCTAAAATTC 57.757 47.619 0.00 0.00 0.00 2.17
1692 1743 3.766051 AGTACTCCGTCCGTCCTAAAATT 59.234 43.478 0.00 0.00 0.00 1.82
1693 1744 3.359950 AGTACTCCGTCCGTCCTAAAAT 58.640 45.455 0.00 0.00 0.00 1.82
1694 1745 2.795329 AGTACTCCGTCCGTCCTAAAA 58.205 47.619 0.00 0.00 0.00 1.52
1695 1746 2.496899 AGTACTCCGTCCGTCCTAAA 57.503 50.000 0.00 0.00 0.00 1.85
1696 1747 3.270877 GTTAGTACTCCGTCCGTCCTAA 58.729 50.000 0.00 0.00 0.00 2.69
1697 1748 2.236146 TGTTAGTACTCCGTCCGTCCTA 59.764 50.000 0.00 0.00 0.00 2.94
1698 1749 1.003580 TGTTAGTACTCCGTCCGTCCT 59.996 52.381 0.00 0.00 0.00 3.85
1699 1750 1.453155 TGTTAGTACTCCGTCCGTCC 58.547 55.000 0.00 0.00 0.00 4.79
1700 1751 3.376546 AGAATGTTAGTACTCCGTCCGTC 59.623 47.826 0.00 0.00 0.00 4.79
1701 1752 3.350833 AGAATGTTAGTACTCCGTCCGT 58.649 45.455 0.00 0.00 0.00 4.69
1702 1753 4.349501 GAAGAATGTTAGTACTCCGTCCG 58.650 47.826 0.00 0.00 0.00 4.79
1703 1754 4.349501 CGAAGAATGTTAGTACTCCGTCC 58.650 47.826 0.00 0.00 0.00 4.79
1704 1755 4.095483 TCCGAAGAATGTTAGTACTCCGTC 59.905 45.833 0.00 0.00 0.00 4.79
1705 1756 4.012374 TCCGAAGAATGTTAGTACTCCGT 58.988 43.478 0.00 0.00 0.00 4.69
1706 1757 4.627611 TCCGAAGAATGTTAGTACTCCG 57.372 45.455 0.00 0.00 0.00 4.63
1737 1788 8.040727 CCCCCTAGATAAAAACAAATTTCAAGG 58.959 37.037 0.00 0.00 0.00 3.61
1758 1811 5.162637 TCTAATGCAACATAGATACCCCCT 58.837 41.667 0.00 0.00 0.00 4.79
1765 1818 9.064706 CCAATCTCTTTCTAATGCAACATAGAT 57.935 33.333 7.74 0.00 0.00 1.98
1766 1819 7.500227 CCCAATCTCTTTCTAATGCAACATAGA 59.500 37.037 0.00 0.00 0.00 1.98
1767 1820 7.646314 CCCAATCTCTTTCTAATGCAACATAG 58.354 38.462 0.00 0.00 0.00 2.23
1768 1821 6.039717 GCCCAATCTCTTTCTAATGCAACATA 59.960 38.462 0.00 0.00 0.00 2.29
1769 1822 5.163478 GCCCAATCTCTTTCTAATGCAACAT 60.163 40.000 0.00 0.00 0.00 2.71
1770 1823 4.158394 GCCCAATCTCTTTCTAATGCAACA 59.842 41.667 0.00 0.00 0.00 3.33
1771 1824 4.158394 TGCCCAATCTCTTTCTAATGCAAC 59.842 41.667 0.00 0.00 0.00 4.17
1789 1843 5.177326 GCTGTAAAATTTGAATGATGCCCA 58.823 37.500 0.00 0.00 0.00 5.36
1791 1845 5.177326 TGGCTGTAAAATTTGAATGATGCC 58.823 37.500 0.00 0.00 36.38 4.40
1851 1905 4.576463 GTGTTTAGAGGAGGGCATACATTG 59.424 45.833 0.00 0.00 0.00 2.82
1885 1956 6.155475 TGCACTTTGTAGCATTTAGGTTTT 57.845 33.333 0.00 0.00 35.51 2.43
1921 1992 2.935955 CGTGTGCTCGGTTCAACC 59.064 61.111 0.00 0.00 34.05 3.77
1924 1995 2.964925 GTGCGTGTGCTCGGTTCA 60.965 61.111 0.00 0.00 43.34 3.18
1934 2005 2.506217 CGATAGTGGCGTGCGTGT 60.506 61.111 0.00 0.00 0.00 4.49
1938 2009 0.941463 CTCATCCGATAGTGGCGTGC 60.941 60.000 0.00 0.00 0.00 5.34
1956 2027 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1957 2028 5.452078 CTCTCTCTCTCTCTCTCTCTCTC 57.548 52.174 0.00 0.00 0.00 3.20
2299 2370 2.689034 CTCACCCTCACCCTCCCC 60.689 72.222 0.00 0.00 0.00 4.81
2300 2371 2.689034 CCTCACCCTCACCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
2301 2372 2.689034 CCCTCACCCTCACCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
2302 2373 2.689034 CCCCTCACCCTCACCCTC 60.689 72.222 0.00 0.00 0.00 4.30
2303 2374 4.354943 CCCCCTCACCCTCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
2318 2389 4.179599 CTCCCTCTCCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
2319 2390 3.036959 TCTCCCTCTCCCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
2320 2391 2.015726 TCTCTCCCTCTCCCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
2321 2392 0.996762 TCTCTCTCCCTCTCCCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
2322 2393 0.998945 CTCTCTCTCCCTCTCCCCCT 60.999 65.000 0.00 0.00 0.00 4.79
2323 2394 0.996762 TCTCTCTCTCCCTCTCCCCC 60.997 65.000 0.00 0.00 0.00 5.40
2324 2395 0.478507 CTCTCTCTCTCCCTCTCCCC 59.521 65.000 0.00 0.00 0.00 4.81
2325 2396 0.478507 CCTCTCTCTCTCCCTCTCCC 59.521 65.000 0.00 0.00 0.00 4.30
2326 2397 0.178990 GCCTCTCTCTCTCCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
2327 2398 0.178990 GGCCTCTCTCTCTCCCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
2328 2399 1.655114 GGGCCTCTCTCTCTCCCTCT 61.655 65.000 0.84 0.00 34.19 3.69
2329 2400 1.152546 GGGCCTCTCTCTCTCCCTC 60.153 68.421 0.84 0.00 34.19 4.30
2330 2401 2.710826 GGGGCCTCTCTCTCTCCCT 61.711 68.421 0.84 0.00 37.16 4.20
2331 2402 2.123033 GGGGCCTCTCTCTCTCCC 60.123 72.222 0.84 0.00 36.25 4.30
2332 2403 2.366153 ATCGGGGCCTCTCTCTCTCC 62.366 65.000 0.00 0.00 0.00 3.71
2333 2404 1.152830 ATCGGGGCCTCTCTCTCTC 59.847 63.158 0.00 0.00 0.00 3.20
2334 2405 1.152567 CATCGGGGCCTCTCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
2335 2406 1.152652 TCATCGGGGCCTCTCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
2336 2407 1.152567 CTCATCGGGGCCTCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
2337 2408 2.866726 GCTCATCGGGGCCTCTCTC 61.867 68.421 0.00 0.00 0.00 3.20
2338 2409 2.841988 GCTCATCGGGGCCTCTCT 60.842 66.667 0.00 0.00 0.00 3.10
2339 2410 2.049627 AATGCTCATCGGGGCCTCTC 62.050 60.000 0.00 0.00 0.00 3.20
2340 2411 0.764369 TAATGCTCATCGGGGCCTCT 60.764 55.000 0.00 0.00 0.00 3.69
2341 2412 0.321122 CTAATGCTCATCGGGGCCTC 60.321 60.000 0.84 0.00 0.00 4.70
2342 2413 1.757306 CTAATGCTCATCGGGGCCT 59.243 57.895 0.84 0.00 0.00 5.19
2343 2414 1.968540 GCTAATGCTCATCGGGGCC 60.969 63.158 0.00 0.00 36.03 5.80
2344 2415 1.968540 GGCTAATGCTCATCGGGGC 60.969 63.158 0.00 0.00 39.59 5.80
2345 2416 0.604780 CAGGCTAATGCTCATCGGGG 60.605 60.000 0.00 0.00 39.59 5.73
2346 2417 0.604780 CCAGGCTAATGCTCATCGGG 60.605 60.000 0.00 0.00 39.59 5.14
2347 2418 0.107456 ACCAGGCTAATGCTCATCGG 59.893 55.000 0.00 0.00 39.59 4.18
2348 2419 2.820059 TACCAGGCTAATGCTCATCG 57.180 50.000 0.00 0.00 39.59 3.84
2349 2420 7.510549 TTTTATTACCAGGCTAATGCTCATC 57.489 36.000 0.00 0.00 39.59 2.92
2350 2421 8.482852 AATTTTATTACCAGGCTAATGCTCAT 57.517 30.769 0.00 0.00 39.59 2.90
2351 2422 7.896383 AATTTTATTACCAGGCTAATGCTCA 57.104 32.000 0.00 0.00 39.59 4.26
2352 2423 9.899226 CTAAATTTTATTACCAGGCTAATGCTC 57.101 33.333 0.00 0.00 39.59 4.26
2353 2424 8.860088 CCTAAATTTTATTACCAGGCTAATGCT 58.140 33.333 0.00 0.00 39.59 3.79
2354 2425 7.598869 GCCTAAATTTTATTACCAGGCTAATGC 59.401 37.037 15.58 0.00 37.01 3.56
2355 2426 8.637986 TGCCTAAATTTTATTACCAGGCTAATG 58.362 33.333 20.90 0.00 40.26 1.90
2356 2427 8.776061 TGCCTAAATTTTATTACCAGGCTAAT 57.224 30.769 20.90 0.00 40.26 1.73
2357 2428 8.596781 TTGCCTAAATTTTATTACCAGGCTAA 57.403 30.769 20.90 13.32 40.26 3.09
2358 2429 8.596781 TTTGCCTAAATTTTATTACCAGGCTA 57.403 30.769 20.90 13.90 40.26 3.93
2359 2430 7.489239 TTTGCCTAAATTTTATTACCAGGCT 57.511 32.000 20.90 0.00 40.26 4.58
2360 2431 7.065324 GGTTTTGCCTAAATTTTATTACCAGGC 59.935 37.037 15.88 15.88 40.05 4.85
2361 2432 7.276878 CGGTTTTGCCTAAATTTTATTACCAGG 59.723 37.037 0.00 0.00 34.25 4.45
2362 2433 7.815549 ACGGTTTTGCCTAAATTTTATTACCAG 59.184 33.333 0.00 0.00 34.25 4.00
2363 2434 7.668492 ACGGTTTTGCCTAAATTTTATTACCA 58.332 30.769 0.00 0.00 34.25 3.25
2364 2435 7.276218 GGACGGTTTTGCCTAAATTTTATTACC 59.724 37.037 0.00 0.00 34.25 2.85
2365 2436 7.276218 GGGACGGTTTTGCCTAAATTTTATTAC 59.724 37.037 0.00 0.00 34.25 1.89
2366 2437 7.321908 GGGACGGTTTTGCCTAAATTTTATTA 58.678 34.615 0.00 0.00 34.25 0.98
2367 2438 6.167685 GGGACGGTTTTGCCTAAATTTTATT 58.832 36.000 0.00 0.00 34.25 1.40
2368 2439 5.337733 GGGGACGGTTTTGCCTAAATTTTAT 60.338 40.000 0.00 0.00 34.25 1.40
2369 2440 4.021280 GGGGACGGTTTTGCCTAAATTTTA 60.021 41.667 0.00 0.00 34.25 1.52
2370 2441 3.244284 GGGGACGGTTTTGCCTAAATTTT 60.244 43.478 0.00 0.00 34.25 1.82
2371 2442 2.300723 GGGGACGGTTTTGCCTAAATTT 59.699 45.455 0.00 0.00 34.25 1.82
2372 2443 1.897133 GGGGACGGTTTTGCCTAAATT 59.103 47.619 0.00 0.00 34.25 1.82
2373 2444 1.203075 TGGGGACGGTTTTGCCTAAAT 60.203 47.619 0.00 0.00 34.25 1.40
2374 2445 0.185416 TGGGGACGGTTTTGCCTAAA 59.815 50.000 0.00 0.00 34.25 1.85
2375 2446 0.537828 GTGGGGACGGTTTTGCCTAA 60.538 55.000 0.00 0.00 34.25 2.69
2376 2447 1.073548 GTGGGGACGGTTTTGCCTA 59.926 57.895 0.00 0.00 34.25 3.93
2377 2448 2.203437 GTGGGGACGGTTTTGCCT 60.203 61.111 0.00 0.00 34.25 4.75
2378 2449 2.203437 AGTGGGGACGGTTTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
2379 2450 2.265904 GGAGTGGGGACGGTTTTGC 61.266 63.158 0.00 0.00 0.00 3.68
2380 2451 1.964373 CGGAGTGGGGACGGTTTTG 60.964 63.158 0.00 0.00 0.00 2.44
2381 2452 2.428622 CGGAGTGGGGACGGTTTT 59.571 61.111 0.00 0.00 0.00 2.43
2382 2453 3.633116 CCGGAGTGGGGACGGTTT 61.633 66.667 0.00 0.00 0.00 3.27
2392 2463 3.901797 GAACCAGGTGGCCGGAGTG 62.902 68.421 5.05 0.00 39.32 3.51
2393 2464 3.637273 GAACCAGGTGGCCGGAGT 61.637 66.667 5.05 0.00 39.32 3.85
2394 2465 2.690653 TTTGAACCAGGTGGCCGGAG 62.691 60.000 5.05 0.00 39.32 4.63
2395 2466 2.758207 TTTGAACCAGGTGGCCGGA 61.758 57.895 5.05 0.00 39.32 5.14
2396 2467 2.203422 TTTGAACCAGGTGGCCGG 60.203 61.111 0.00 0.00 39.32 6.13
2397 2468 3.039134 GTTTGAACCAGGTGGCCG 58.961 61.111 0.00 0.00 39.32 6.13
2428 2499 0.250038 TGTGTGTGAGAGCAAGAGGC 60.250 55.000 0.00 0.00 45.30 4.70
2429 2500 1.793258 CTGTGTGTGAGAGCAAGAGG 58.207 55.000 0.00 0.00 0.00 3.69
2430 2501 1.146637 GCTGTGTGTGAGAGCAAGAG 58.853 55.000 0.00 0.00 40.79 2.85
2431 2502 0.755079 AGCTGTGTGTGAGAGCAAGA 59.245 50.000 0.00 0.00 43.65 3.02
2432 2503 0.866427 CAGCTGTGTGTGAGAGCAAG 59.134 55.000 5.25 0.00 43.65 4.01
2433 2504 1.162181 GCAGCTGTGTGTGAGAGCAA 61.162 55.000 16.64 0.00 43.65 3.91
2434 2505 1.596203 GCAGCTGTGTGTGAGAGCA 60.596 57.895 16.64 0.00 43.65 4.26
2435 2506 1.290491 GAGCAGCTGTGTGTGAGAGC 61.290 60.000 16.64 0.00 41.44 4.09
2436 2507 0.033090 TGAGCAGCTGTGTGTGAGAG 59.967 55.000 16.64 0.00 0.00 3.20
2437 2508 0.683412 ATGAGCAGCTGTGTGTGAGA 59.317 50.000 16.64 0.00 0.00 3.27
2438 2509 0.796927 CATGAGCAGCTGTGTGTGAG 59.203 55.000 16.64 0.00 0.00 3.51
2439 2510 0.393820 TCATGAGCAGCTGTGTGTGA 59.606 50.000 16.64 12.07 0.00 3.58
2440 2511 1.450025 ATCATGAGCAGCTGTGTGTG 58.550 50.000 16.64 9.94 0.00 3.82
2441 2512 2.195741 AATCATGAGCAGCTGTGTGT 57.804 45.000 16.64 0.00 0.00 3.72
2442 2513 2.747989 AGAAATCATGAGCAGCTGTGTG 59.252 45.455 16.64 9.24 0.00 3.82
2443 2514 3.008330 GAGAAATCATGAGCAGCTGTGT 58.992 45.455 16.64 2.54 0.00 3.72
2444 2515 2.355132 GGAGAAATCATGAGCAGCTGTG 59.645 50.000 16.64 5.59 0.00 3.66
2445 2516 2.239150 AGGAGAAATCATGAGCAGCTGT 59.761 45.455 16.64 1.59 0.00 4.40
2446 2517 2.873472 GAGGAGAAATCATGAGCAGCTG 59.127 50.000 10.11 10.11 0.00 4.24
2447 2518 2.158784 GGAGGAGAAATCATGAGCAGCT 60.159 50.000 0.09 0.00 0.00 4.24
2448 2519 2.220313 GGAGGAGAAATCATGAGCAGC 58.780 52.381 0.09 0.00 0.00 5.25
2449 2520 2.486907 GGGGAGGAGAAATCATGAGCAG 60.487 54.545 0.09 0.00 0.00 4.24
2450 2521 1.492176 GGGGAGGAGAAATCATGAGCA 59.508 52.381 0.09 0.00 0.00 4.26
2451 2522 1.202867 GGGGGAGGAGAAATCATGAGC 60.203 57.143 0.09 0.00 0.00 4.26
2452 2523 2.371510 GAGGGGGAGGAGAAATCATGAG 59.628 54.545 0.09 0.00 0.00 2.90
2453 2524 2.412591 GAGGGGGAGGAGAAATCATGA 58.587 52.381 0.00 0.00 0.00 3.07
2454 2525 1.423161 GGAGGGGGAGGAGAAATCATG 59.577 57.143 0.00 0.00 0.00 3.07
2455 2526 1.011293 TGGAGGGGGAGGAGAAATCAT 59.989 52.381 0.00 0.00 0.00 2.45
2456 2527 0.421495 TGGAGGGGGAGGAGAAATCA 59.579 55.000 0.00 0.00 0.00 2.57
2457 2528 1.826447 ATGGAGGGGGAGGAGAAATC 58.174 55.000 0.00 0.00 0.00 2.17
2458 2529 2.139382 GAATGGAGGGGGAGGAGAAAT 58.861 52.381 0.00 0.00 0.00 2.17
2459 2530 1.203557 TGAATGGAGGGGGAGGAGAAA 60.204 52.381 0.00 0.00 0.00 2.52
2460 2531 0.421495 TGAATGGAGGGGGAGGAGAA 59.579 55.000 0.00 0.00 0.00 2.87
2461 2532 0.326618 GTGAATGGAGGGGGAGGAGA 60.327 60.000 0.00 0.00 0.00 3.71
2462 2533 1.690219 CGTGAATGGAGGGGGAGGAG 61.690 65.000 0.00 0.00 0.00 3.69
2463 2534 1.689233 CGTGAATGGAGGGGGAGGA 60.689 63.158 0.00 0.00 0.00 3.71
2464 2535 1.689233 TCGTGAATGGAGGGGGAGG 60.689 63.158 0.00 0.00 0.00 4.30
2465 2536 1.522569 GTCGTGAATGGAGGGGGAG 59.477 63.158 0.00 0.00 0.00 4.30
2466 2537 2.355986 CGTCGTGAATGGAGGGGGA 61.356 63.158 0.00 0.00 0.00 4.81
2467 2538 2.186903 CGTCGTGAATGGAGGGGG 59.813 66.667 0.00 0.00 0.00 5.40
2468 2539 2.186903 CCGTCGTGAATGGAGGGG 59.813 66.667 0.00 0.00 35.91 4.79
2469 2540 2.511600 GCCGTCGTGAATGGAGGG 60.512 66.667 0.00 0.00 41.28 4.30
2470 2541 1.079127 AAGCCGTCGTGAATGGAGG 60.079 57.895 0.00 0.00 35.91 4.30
2471 2542 1.970917 GCAAGCCGTCGTGAATGGAG 61.971 60.000 0.00 0.00 35.91 3.86
2472 2543 2.032634 GCAAGCCGTCGTGAATGGA 61.033 57.895 0.00 0.00 35.91 3.41
2473 2544 2.480555 GCAAGCCGTCGTGAATGG 59.519 61.111 0.00 0.00 37.07 3.16
2474 2545 2.096406 CGCAAGCCGTCGTGAATG 59.904 61.111 0.00 0.00 0.00 2.67
2486 2557 3.864686 CCCGAATCACCGCGCAAG 61.865 66.667 8.75 0.00 43.44 4.01
2490 2561 3.940640 CATGCCCGAATCACCGCG 61.941 66.667 0.00 0.00 0.00 6.46
2491 2562 3.585990 CCATGCCCGAATCACCGC 61.586 66.667 0.00 0.00 0.00 5.68
2492 2563 2.901840 CCCATGCCCGAATCACCG 60.902 66.667 0.00 0.00 0.00 4.94
2493 2564 1.379843 AACCCATGCCCGAATCACC 60.380 57.895 0.00 0.00 0.00 4.02
2494 2565 1.714899 CGAACCCATGCCCGAATCAC 61.715 60.000 0.00 0.00 0.00 3.06
2495 2566 1.451207 CGAACCCATGCCCGAATCA 60.451 57.895 0.00 0.00 0.00 2.57
2496 2567 1.436983 GACGAACCCATGCCCGAATC 61.437 60.000 0.00 0.00 0.00 2.52
2497 2568 1.451387 GACGAACCCATGCCCGAAT 60.451 57.895 0.00 0.00 0.00 3.34
2498 2569 2.046700 GACGAACCCATGCCCGAA 60.047 61.111 0.00 0.00 0.00 4.30
2499 2570 4.444838 CGACGAACCCATGCCCGA 62.445 66.667 0.00 0.00 0.00 5.14
2500 2571 3.359515 TACGACGAACCCATGCCCG 62.360 63.158 0.00 0.00 0.00 6.13
2501 2572 2.580276 TACGACGAACCCATGCCC 59.420 61.111 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.