Multiple sequence alignment - TraesCS3B01G172000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G172000 chr3B 100.000 4355 0 0 1 4355 172982718 172978364 0.000000e+00 8043.0
1 TraesCS3B01G172000 chr3B 92.434 2987 178 18 833 3782 146982530 146979555 0.000000e+00 4220.0
2 TraesCS3B01G172000 chr3B 91.294 2814 195 30 828 3615 172052070 172054859 0.000000e+00 3794.0
3 TraesCS3B01G172000 chr3B 91.142 2777 195 31 865 3615 172170467 172173218 0.000000e+00 3718.0
4 TraesCS3B01G172000 chr3B 90.069 2900 237 41 770 3641 172211686 172214562 0.000000e+00 3712.0
5 TraesCS3B01G172000 chr3B 89.722 2909 244 42 770 3641 172092228 172095118 0.000000e+00 3664.0
6 TraesCS3B01G172000 chr3B 92.073 492 25 3 268 752 172091629 172092113 0.000000e+00 680.0
7 TraesCS3B01G172000 chr3B 92.763 456 25 3 268 723 172211143 172211590 0.000000e+00 652.0
8 TraesCS3B01G172000 chr3B 97.129 209 6 0 1 209 312175222 312175430 1.930000e-93 353.0
9 TraesCS3B01G172000 chr3B 97.129 209 6 0 1 209 752283585 752283793 1.930000e-93 353.0
10 TraesCS3B01G172000 chr3B 85.154 357 36 11 3849 4196 146979416 146979068 2.490000e-92 350.0
11 TraesCS3B01G172000 chr3B 100.000 107 0 0 163 269 173000066 172999960 9.550000e-47 198.0
12 TraesCS3B01G172000 chr3B 87.736 106 8 3 3751 3855 146979684 146979583 7.650000e-23 119.0
13 TraesCS3B01G172000 chr3B 85.841 113 11 4 4190 4300 146977632 146977523 9.900000e-22 115.0
14 TraesCS3B01G172000 chr3D 95.275 2603 103 10 836 3421 121268889 121266290 0.000000e+00 4108.0
15 TraesCS3B01G172000 chr3D 94.327 2644 119 14 833 3449 121334847 121332208 0.000000e+00 4023.0
16 TraesCS3B01G172000 chr3D 90.928 485 35 3 268 752 121269618 121269143 1.020000e-180 643.0
17 TraesCS3B01G172000 chr3D 89.145 433 29 12 3849 4272 121261800 121261377 1.390000e-144 523.0
18 TraesCS3B01G172000 chr3D 88.270 341 23 7 3449 3775 121262345 121262008 4.080000e-105 392.0
19 TraesCS3B01G172000 chr3D 96.026 151 6 0 270 420 116075056 116074906 3.360000e-61 246.0
20 TraesCS3B01G172000 chr3D 98.276 58 1 0 212 269 426407685 426407742 7.710000e-18 102.0
21 TraesCS3B01G172000 chr1D 92.583 2737 159 12 770 3480 341030094 341027376 0.000000e+00 3890.0
22 TraesCS3B01G172000 chr1B 92.444 2713 161 12 794 3480 456714357 456711663 0.000000e+00 3834.0
23 TraesCS3B01G172000 chr1B 86.620 284 18 7 475 752 456714778 456714509 3.290000e-76 296.0
24 TraesCS3B01G172000 chr1B 99.065 107 1 0 163 269 277434040 277433934 4.440000e-45 193.0
25 TraesCS3B01G172000 chr1B 93.846 65 3 1 212 275 313085445 313085509 3.580000e-16 97.1
26 TraesCS3B01G172000 chr3A 93.173 2578 144 19 865 3419 127858970 127856402 0.000000e+00 3757.0
27 TraesCS3B01G172000 chr3A 91.812 2589 177 15 1213 3775 127822363 127819784 0.000000e+00 3574.0
28 TraesCS3B01G172000 chr3A 84.890 364 27 15 3849 4196 127819582 127819231 4.170000e-90 342.0
29 TraesCS3B01G172000 chr3A 85.503 338 15 15 833 1144 127066250 127066579 5.430000e-84 322.0
30 TraesCS3B01G172000 chr3A 91.667 84 3 3 3772 3855 127819885 127819806 3.560000e-21 113.0
31 TraesCS3B01G172000 chr3A 79.508 122 20 5 4190 4307 127811126 127811006 1.000000e-11 82.4
32 TraesCS3B01G172000 chr1A 90.752 1157 79 11 770 1904 440780685 440779535 0.000000e+00 1519.0
33 TraesCS3B01G172000 chr2B 98.086 209 4 0 1 209 640105850 640105642 8.900000e-97 364.0
34 TraesCS3B01G172000 chr2B 98.086 209 4 0 1 209 742548508 742548300 8.900000e-97 364.0
35 TraesCS3B01G172000 chr2B 96.651 209 7 0 1 209 683669909 683669701 8.960000e-92 348.0
36 TraesCS3B01G172000 chr4B 98.077 208 4 0 1 208 66093013 66092806 3.200000e-96 363.0
37 TraesCS3B01G172000 chr4B 99.074 108 1 0 163 270 66092900 66092793 1.240000e-45 195.0
38 TraesCS3B01G172000 chr4B 99.065 107 1 0 163 269 66097700 66097594 4.440000e-45 193.0
39 TraesCS3B01G172000 chr4B 96.923 65 1 1 212 276 311363245 311363308 1.660000e-19 108.0
40 TraesCS3B01G172000 chr4B 98.387 62 0 1 212 273 311368047 311368107 1.660000e-19 108.0
41 TraesCS3B01G172000 chr6B 97.129 209 6 0 1 209 646623016 646622808 1.930000e-93 353.0
42 TraesCS3B01G172000 chr6B 96.651 209 6 1 1 209 440785103 440785310 3.220000e-91 346.0
43 TraesCS3B01G172000 chr6B 99.065 107 1 0 163 269 440779907 440780013 4.440000e-45 193.0
44 TraesCS3B01G172000 chr6B 99.065 107 1 0 163 269 646622903 646622797 4.440000e-45 193.0
45 TraesCS3B01G172000 chr6B 99.065 107 1 0 163 269 646627686 646627580 4.440000e-45 193.0
46 TraesCS3B01G172000 chr6B 97.500 40 1 0 4310 4349 520001677 520001716 7.820000e-08 69.4
47 TraesCS3B01G172000 chr6B 91.304 46 4 0 4310 4355 40517795 40517840 3.640000e-06 63.9
48 TraesCS3B01G172000 chr7B 96.172 209 8 0 1 209 15037295 15037503 4.170000e-90 342.0
49 TraesCS3B01G172000 chr7B 99.065 107 1 0 163 269 15032636 15032742 4.440000e-45 193.0
50 TraesCS3B01G172000 chr4A 99.065 107 1 0 163 269 647214219 647214325 4.440000e-45 193.0
51 TraesCS3B01G172000 chr7D 96.923 65 0 2 212 276 510009185 510009123 1.660000e-19 108.0
52 TraesCS3B01G172000 chr5A 98.361 61 1 0 212 272 135542330 135542270 1.660000e-19 108.0
53 TraesCS3B01G172000 chr2A 95.349 43 2 0 4313 4355 725543819 725543777 7.820000e-08 69.4
54 TraesCS3B01G172000 chr2A 95.349 43 2 0 4313 4355 725662709 725662667 7.820000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G172000 chr3B 172978364 172982718 4354 True 8043.0 8043 100.000000 1 4355 1 chr3B.!!$R1 4354
1 TraesCS3B01G172000 chr3B 172052070 172054859 2789 False 3794.0 3794 91.294000 828 3615 1 chr3B.!!$F1 2787
2 TraesCS3B01G172000 chr3B 172170467 172173218 2751 False 3718.0 3718 91.142000 865 3615 1 chr3B.!!$F2 2750
3 TraesCS3B01G172000 chr3B 172211143 172214562 3419 False 2182.0 3712 91.416000 268 3641 2 chr3B.!!$F6 3373
4 TraesCS3B01G172000 chr3B 172091629 172095118 3489 False 2172.0 3664 90.897500 268 3641 2 chr3B.!!$F5 3373
5 TraesCS3B01G172000 chr3B 146977523 146982530 5007 True 1201.0 4220 87.791250 833 4300 4 chr3B.!!$R3 3467
6 TraesCS3B01G172000 chr3D 121332208 121334847 2639 True 4023.0 4023 94.327000 833 3449 1 chr3D.!!$R2 2616
7 TraesCS3B01G172000 chr3D 121261377 121269618 8241 True 1416.5 4108 90.904500 268 4272 4 chr3D.!!$R3 4004
8 TraesCS3B01G172000 chr1D 341027376 341030094 2718 True 3890.0 3890 92.583000 770 3480 1 chr1D.!!$R1 2710
9 TraesCS3B01G172000 chr1B 456711663 456714778 3115 True 2065.0 3834 89.532000 475 3480 2 chr1B.!!$R2 3005
10 TraesCS3B01G172000 chr3A 127856402 127858970 2568 True 3757.0 3757 93.173000 865 3419 1 chr3A.!!$R2 2554
11 TraesCS3B01G172000 chr3A 127819231 127822363 3132 True 1343.0 3574 89.456333 1213 4196 3 chr3A.!!$R3 2983
12 TraesCS3B01G172000 chr1A 440779535 440780685 1150 True 1519.0 1519 90.752000 770 1904 1 chr1A.!!$R1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 110 0.039618 ACAAGGTTACATGGGCCTGG 59.960 55.0 4.53 1.46 32.16 4.45 F
139 140 0.113776 AGAATATGGGCCTGGGCATG 59.886 55.0 22.68 0.00 44.11 4.06 F
140 141 0.178953 GAATATGGGCCTGGGCATGT 60.179 55.0 22.68 9.34 44.11 3.21 F
726 788 0.320508 AAGAAGAAACTCCGGTCGCC 60.321 55.0 0.00 0.00 0.00 5.54 F
2172 2429 0.033504 CCAAGGATACGCACGGCTAT 59.966 55.0 0.00 0.00 46.39 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1723 0.246360 CACGATGCAGTAGTCCACCA 59.754 55.000 0.00 0.0 0.00 4.17 R
1590 1847 1.006998 AGCTCCCTGATCAGAGTCAGT 59.993 52.381 24.62 1.1 43.22 3.41 R
2143 2400 1.613255 CGTATCCTTGGCAACCACCTT 60.613 52.381 0.00 0.0 30.78 3.50 R
2217 2474 2.106166 GTCCATCTTCTCCCTGATGCAT 59.894 50.000 0.00 0.0 38.84 3.96 R
3840 8092 0.250901 AGGCCACACAGGTTGCTAAG 60.251 55.000 5.01 0.0 40.61 2.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.987232 GGTTTGGTCCTGGTCTGATAC 58.013 52.381 0.00 0.00 0.00 2.24
35 36 6.963049 GTCTGATACCATGTTAGAAAACGT 57.037 37.500 0.00 0.00 38.53 3.99
45 46 5.524971 TGTTAGAAAACGTGAGGAAGAGA 57.475 39.130 0.00 0.00 38.53 3.10
46 47 5.529791 TGTTAGAAAACGTGAGGAAGAGAG 58.470 41.667 0.00 0.00 38.53 3.20
47 48 5.301045 TGTTAGAAAACGTGAGGAAGAGAGA 59.699 40.000 0.00 0.00 38.53 3.10
48 49 4.939052 AGAAAACGTGAGGAAGAGAGAA 57.061 40.909 0.00 0.00 0.00 2.87
49 50 5.476091 AGAAAACGTGAGGAAGAGAGAAT 57.524 39.130 0.00 0.00 0.00 2.40
50 51 5.233988 AGAAAACGTGAGGAAGAGAGAATG 58.766 41.667 0.00 0.00 0.00 2.67
51 52 4.873746 AAACGTGAGGAAGAGAGAATGA 57.126 40.909 0.00 0.00 0.00 2.57
52 53 3.859411 ACGTGAGGAAGAGAGAATGAC 57.141 47.619 0.00 0.00 0.00 3.06
53 54 2.494073 ACGTGAGGAAGAGAGAATGACC 59.506 50.000 0.00 0.00 0.00 4.02
54 55 2.478709 CGTGAGGAAGAGAGAATGACCG 60.479 54.545 0.00 0.00 0.00 4.79
55 56 2.755655 GTGAGGAAGAGAGAATGACCGA 59.244 50.000 0.00 0.00 0.00 4.69
56 57 3.193691 GTGAGGAAGAGAGAATGACCGAA 59.806 47.826 0.00 0.00 0.00 4.30
57 58 3.193691 TGAGGAAGAGAGAATGACCGAAC 59.806 47.826 0.00 0.00 0.00 3.95
58 59 3.165875 AGGAAGAGAGAATGACCGAACA 58.834 45.455 0.00 0.00 0.00 3.18
59 60 3.194542 AGGAAGAGAGAATGACCGAACAG 59.805 47.826 0.00 0.00 0.00 3.16
60 61 3.056465 GGAAGAGAGAATGACCGAACAGT 60.056 47.826 0.00 0.00 0.00 3.55
61 62 4.561105 GAAGAGAGAATGACCGAACAGTT 58.439 43.478 0.00 0.00 0.00 3.16
62 63 4.608948 AGAGAGAATGACCGAACAGTTT 57.391 40.909 0.00 0.00 0.00 2.66
63 64 4.962155 AGAGAGAATGACCGAACAGTTTT 58.038 39.130 0.00 0.00 0.00 2.43
64 65 4.991687 AGAGAGAATGACCGAACAGTTTTC 59.008 41.667 0.00 0.00 0.00 2.29
65 66 4.962155 AGAGAATGACCGAACAGTTTTCT 58.038 39.130 0.00 0.00 0.00 2.52
80 81 6.042638 CAGTTTTCTGTATTGAGGAGGAGA 57.957 41.667 0.00 0.00 42.48 3.71
81 82 6.105333 CAGTTTTCTGTATTGAGGAGGAGAG 58.895 44.000 0.00 0.00 42.48 3.20
82 83 6.019748 AGTTTTCTGTATTGAGGAGGAGAGA 58.980 40.000 0.00 0.00 0.00 3.10
83 84 6.154363 AGTTTTCTGTATTGAGGAGGAGAGAG 59.846 42.308 0.00 0.00 0.00 3.20
84 85 5.458451 TTCTGTATTGAGGAGGAGAGAGA 57.542 43.478 0.00 0.00 0.00 3.10
85 86 5.047566 TCTGTATTGAGGAGGAGAGAGAG 57.952 47.826 0.00 0.00 0.00 3.20
86 87 4.724293 TCTGTATTGAGGAGGAGAGAGAGA 59.276 45.833 0.00 0.00 0.00 3.10
87 88 5.372363 TCTGTATTGAGGAGGAGAGAGAGAT 59.628 44.000 0.00 0.00 0.00 2.75
88 89 6.560687 TCTGTATTGAGGAGGAGAGAGAGATA 59.439 42.308 0.00 0.00 0.00 1.98
89 90 7.239563 TCTGTATTGAGGAGGAGAGAGAGATAT 59.760 40.741 0.00 0.00 0.00 1.63
90 91 8.456221 TGTATTGAGGAGGAGAGAGAGATATA 57.544 38.462 0.00 0.00 0.00 0.86
91 92 8.325787 TGTATTGAGGAGGAGAGAGAGATATAC 58.674 40.741 0.00 0.00 0.00 1.47
92 93 6.771934 TTGAGGAGGAGAGAGAGATATACA 57.228 41.667 0.00 0.00 0.00 2.29
93 94 6.771934 TGAGGAGGAGAGAGAGATATACAA 57.228 41.667 0.00 0.00 0.00 2.41
94 95 6.778821 TGAGGAGGAGAGAGAGATATACAAG 58.221 44.000 0.00 0.00 0.00 3.16
95 96 6.139679 AGGAGGAGAGAGAGATATACAAGG 57.860 45.833 0.00 0.00 0.00 3.61
96 97 5.615261 AGGAGGAGAGAGAGATATACAAGGT 59.385 44.000 0.00 0.00 0.00 3.50
97 98 6.104094 AGGAGGAGAGAGAGATATACAAGGTT 59.896 42.308 0.00 0.00 0.00 3.50
98 99 7.296150 AGGAGGAGAGAGAGATATACAAGGTTA 59.704 40.741 0.00 0.00 0.00 2.85
99 100 7.392393 GGAGGAGAGAGAGATATACAAGGTTAC 59.608 44.444 0.00 0.00 0.00 2.50
100 101 7.817440 AGGAGAGAGAGATATACAAGGTTACA 58.183 38.462 0.00 0.00 0.00 2.41
101 102 8.452868 AGGAGAGAGAGATATACAAGGTTACAT 58.547 37.037 0.00 0.00 0.00 2.29
102 103 8.519526 GGAGAGAGAGATATACAAGGTTACATG 58.480 40.741 0.00 0.00 0.00 3.21
103 104 8.415950 AGAGAGAGATATACAAGGTTACATGG 57.584 38.462 0.00 0.00 0.00 3.66
104 105 7.453126 AGAGAGAGATATACAAGGTTACATGGG 59.547 40.741 0.00 0.00 0.00 4.00
105 106 6.014156 AGAGAGATATACAAGGTTACATGGGC 60.014 42.308 0.00 0.00 0.00 5.36
106 107 5.013183 AGAGATATACAAGGTTACATGGGCC 59.987 44.000 0.00 0.00 0.00 5.80
107 108 4.913968 AGATATACAAGGTTACATGGGCCT 59.086 41.667 4.53 0.00 0.00 5.19
108 109 2.799126 TACAAGGTTACATGGGCCTG 57.201 50.000 4.53 3.00 32.16 4.85
109 110 0.039618 ACAAGGTTACATGGGCCTGG 59.960 55.000 4.53 1.46 32.16 4.45
110 111 0.684153 CAAGGTTACATGGGCCTGGG 60.684 60.000 4.53 0.00 32.16 4.45
111 112 2.442087 GGTTACATGGGCCTGGGC 60.442 66.667 12.58 12.58 41.06 5.36
121 122 3.225235 GCCTGGGCCTCACTCTAG 58.775 66.667 4.53 0.00 34.56 2.43
122 123 1.381872 GCCTGGGCCTCACTCTAGA 60.382 63.158 4.53 0.00 34.56 2.43
123 124 0.978146 GCCTGGGCCTCACTCTAGAA 60.978 60.000 4.53 0.00 34.56 2.10
124 125 1.799933 CCTGGGCCTCACTCTAGAAT 58.200 55.000 4.53 0.00 0.00 2.40
125 126 2.964209 CCTGGGCCTCACTCTAGAATA 58.036 52.381 4.53 0.00 0.00 1.75
126 127 3.515562 CCTGGGCCTCACTCTAGAATAT 58.484 50.000 4.53 0.00 0.00 1.28
127 128 3.260380 CCTGGGCCTCACTCTAGAATATG 59.740 52.174 4.53 0.00 0.00 1.78
128 129 3.242867 TGGGCCTCACTCTAGAATATGG 58.757 50.000 4.53 0.00 0.00 2.74
129 130 2.569404 GGGCCTCACTCTAGAATATGGG 59.431 54.545 0.84 0.00 0.00 4.00
130 131 2.027653 GGCCTCACTCTAGAATATGGGC 60.028 54.545 15.33 15.33 36.70 5.36
131 132 2.027653 GCCTCACTCTAGAATATGGGCC 60.028 54.545 0.00 0.00 0.00 5.80
132 133 3.515562 CCTCACTCTAGAATATGGGCCT 58.484 50.000 4.53 0.00 0.00 5.19
133 134 3.260380 CCTCACTCTAGAATATGGGCCTG 59.740 52.174 4.53 0.00 0.00 4.85
134 135 3.242867 TCACTCTAGAATATGGGCCTGG 58.757 50.000 4.53 0.00 0.00 4.45
135 136 2.304180 CACTCTAGAATATGGGCCTGGG 59.696 54.545 4.53 0.00 0.00 4.45
136 137 1.280421 CTCTAGAATATGGGCCTGGGC 59.720 57.143 12.58 12.58 41.06 5.36
137 138 1.067295 CTAGAATATGGGCCTGGGCA 58.933 55.000 22.68 8.65 44.11 5.36
138 139 1.637553 CTAGAATATGGGCCTGGGCAT 59.362 52.381 22.68 15.02 44.11 4.40
139 140 0.113776 AGAATATGGGCCTGGGCATG 59.886 55.000 22.68 0.00 44.11 4.06
140 141 0.178953 GAATATGGGCCTGGGCATGT 60.179 55.000 22.68 9.34 44.11 3.21
141 142 1.075374 GAATATGGGCCTGGGCATGTA 59.925 52.381 22.68 11.23 44.11 2.29
142 143 0.405585 ATATGGGCCTGGGCATGTAC 59.594 55.000 22.68 4.51 44.11 2.90
143 144 0.990818 TATGGGCCTGGGCATGTACA 60.991 55.000 22.68 10.49 44.11 2.90
144 145 1.873178 ATGGGCCTGGGCATGTACAA 61.873 55.000 22.68 0.00 44.11 2.41
145 146 1.754234 GGGCCTGGGCATGTACAAG 60.754 63.158 22.68 0.00 44.11 3.16
146 147 1.302949 GGCCTGGGCATGTACAAGA 59.697 57.895 16.34 0.00 44.11 3.02
147 148 1.032114 GGCCTGGGCATGTACAAGAC 61.032 60.000 16.34 0.00 44.11 3.01
148 149 0.322456 GCCTGGGCATGTACAAGACA 60.322 55.000 6.24 1.38 43.97 3.41
149 150 1.886222 GCCTGGGCATGTACAAGACAA 60.886 52.381 6.24 0.00 42.78 3.18
150 151 2.513753 CCTGGGCATGTACAAGACAAA 58.486 47.619 6.24 0.00 42.78 2.83
151 152 2.228822 CCTGGGCATGTACAAGACAAAC 59.771 50.000 6.24 0.00 42.78 2.93
152 153 2.884012 CTGGGCATGTACAAGACAAACA 59.116 45.455 6.24 0.00 42.78 2.83
153 154 2.621055 TGGGCATGTACAAGACAAACAC 59.379 45.455 6.24 0.00 42.78 3.32
154 155 2.621055 GGGCATGTACAAGACAAACACA 59.379 45.455 6.24 0.00 42.78 3.72
155 156 3.067461 GGGCATGTACAAGACAAACACAA 59.933 43.478 6.24 0.00 42.78 3.33
156 157 4.261994 GGGCATGTACAAGACAAACACAAT 60.262 41.667 6.24 0.00 42.78 2.71
157 158 5.048364 GGGCATGTACAAGACAAACACAATA 60.048 40.000 6.24 0.00 42.78 1.90
158 159 6.350110 GGGCATGTACAAGACAAACACAATAT 60.350 38.462 6.24 0.00 42.78 1.28
159 160 7.148154 GGGCATGTACAAGACAAACACAATATA 60.148 37.037 6.24 0.00 42.78 0.86
160 161 7.696453 GGCATGTACAAGACAAACACAATATAC 59.304 37.037 0.00 0.00 42.78 1.47
161 162 8.450964 GCATGTACAAGACAAACACAATATACT 58.549 33.333 0.00 0.00 42.78 2.12
164 165 9.549078 TGTACAAGACAAACACAATATACTTCA 57.451 29.630 0.00 0.00 34.15 3.02
165 166 9.807386 GTACAAGACAAACACAATATACTTCAC 57.193 33.333 0.00 0.00 0.00 3.18
166 167 8.677148 ACAAGACAAACACAATATACTTCACT 57.323 30.769 0.00 0.00 0.00 3.41
167 168 8.774586 ACAAGACAAACACAATATACTTCACTC 58.225 33.333 0.00 0.00 0.00 3.51
168 169 8.993121 CAAGACAAACACAATATACTTCACTCT 58.007 33.333 0.00 0.00 0.00 3.24
170 171 9.862371 AGACAAACACAATATACTTCACTCTAG 57.138 33.333 0.00 0.00 0.00 2.43
171 172 9.856488 GACAAACACAATATACTTCACTCTAGA 57.144 33.333 0.00 0.00 0.00 2.43
172 173 9.640963 ACAAACACAATATACTTCACTCTAGAC 57.359 33.333 0.00 0.00 0.00 2.59
173 174 9.862371 CAAACACAATATACTTCACTCTAGACT 57.138 33.333 0.00 0.00 0.00 3.24
178 179 9.303116 ACAATATACTTCACTCTAGACTATGGG 57.697 37.037 0.00 0.00 0.00 4.00
179 180 7.948034 ATATACTTCACTCTAGACTATGGGC 57.052 40.000 0.00 0.00 0.00 5.36
180 181 3.301274 ACTTCACTCTAGACTATGGGCC 58.699 50.000 0.00 0.00 0.00 5.80
181 182 3.052490 ACTTCACTCTAGACTATGGGCCT 60.052 47.826 4.53 0.00 0.00 5.19
182 183 2.950781 TCACTCTAGACTATGGGCCTG 58.049 52.381 4.53 0.00 0.00 4.85
183 184 1.967066 CACTCTAGACTATGGGCCTGG 59.033 57.143 4.53 0.00 0.00 4.45
184 185 1.133009 ACTCTAGACTATGGGCCTGGG 60.133 57.143 4.53 0.00 0.00 4.45
185 186 0.471971 TCTAGACTATGGGCCTGGGC 60.472 60.000 12.58 12.58 41.06 5.36
195 196 3.077907 GCCTGGGCCTGTACAAGA 58.922 61.111 4.53 0.00 34.56 3.02
196 197 1.377333 GCCTGGGCCTGTACAAGAC 60.377 63.158 4.53 0.00 34.56 3.01
197 198 2.066340 CCTGGGCCTGTACAAGACA 58.934 57.895 4.53 0.00 36.35 3.41
198 199 0.400213 CCTGGGCCTGTACAAGACAA 59.600 55.000 4.53 0.00 37.70 3.18
199 200 1.202879 CCTGGGCCTGTACAAGACAAA 60.203 52.381 4.53 0.00 37.70 2.83
200 201 1.880027 CTGGGCCTGTACAAGACAAAC 59.120 52.381 4.53 0.00 37.70 2.93
201 202 1.213182 TGGGCCTGTACAAGACAAACA 59.787 47.619 4.53 0.00 37.70 2.83
202 203 1.607148 GGGCCTGTACAAGACAAACAC 59.393 52.381 0.84 0.00 37.70 3.32
203 204 2.294074 GGCCTGTACAAGACAAACACA 58.706 47.619 0.00 0.00 37.70 3.72
204 205 2.685897 GGCCTGTACAAGACAAACACAA 59.314 45.455 0.00 0.00 37.70 3.33
205 206 3.488553 GGCCTGTACAAGACAAACACAAC 60.489 47.826 0.00 0.00 37.70 3.32
206 207 3.127895 GCCTGTACAAGACAAACACAACA 59.872 43.478 0.00 0.00 37.70 3.33
207 208 4.202010 GCCTGTACAAGACAAACACAACAT 60.202 41.667 0.00 0.00 37.70 2.71
208 209 5.008217 GCCTGTACAAGACAAACACAACATA 59.992 40.000 0.00 0.00 37.70 2.29
209 210 6.427150 CCTGTACAAGACAAACACAACATAC 58.573 40.000 0.00 0.00 37.70 2.39
210 211 6.260050 CCTGTACAAGACAAACACAACATACT 59.740 38.462 0.00 0.00 37.70 2.12
211 212 7.201696 CCTGTACAAGACAAACACAACATACTT 60.202 37.037 0.00 0.00 37.70 2.24
212 213 7.690228 TGTACAAGACAAACACAACATACTTC 58.310 34.615 0.00 0.00 34.15 3.01
213 214 6.751514 ACAAGACAAACACAACATACTTCA 57.248 33.333 0.00 0.00 0.00 3.02
214 215 6.551736 ACAAGACAAACACAACATACTTCAC 58.448 36.000 0.00 0.00 0.00 3.18
215 216 6.374333 ACAAGACAAACACAACATACTTCACT 59.626 34.615 0.00 0.00 0.00 3.41
216 217 6.604735 AGACAAACACAACATACTTCACTC 57.395 37.500 0.00 0.00 0.00 3.51
217 218 6.349300 AGACAAACACAACATACTTCACTCT 58.651 36.000 0.00 0.00 0.00 3.24
218 219 7.497595 AGACAAACACAACATACTTCACTCTA 58.502 34.615 0.00 0.00 0.00 2.43
219 220 7.653713 AGACAAACACAACATACTTCACTCTAG 59.346 37.037 0.00 0.00 0.00 2.43
220 221 7.497595 ACAAACACAACATACTTCACTCTAGA 58.502 34.615 0.00 0.00 0.00 2.43
221 222 7.438459 ACAAACACAACATACTTCACTCTAGAC 59.562 37.037 0.00 0.00 0.00 2.59
222 223 6.902771 ACACAACATACTTCACTCTAGACT 57.097 37.500 0.00 0.00 0.00 3.24
223 224 7.997773 ACACAACATACTTCACTCTAGACTA 57.002 36.000 0.00 0.00 0.00 2.59
224 225 8.582657 ACACAACATACTTCACTCTAGACTAT 57.417 34.615 0.00 0.00 0.00 2.12
225 226 8.462811 ACACAACATACTTCACTCTAGACTATG 58.537 37.037 0.00 0.00 0.00 2.23
226 227 7.918033 CACAACATACTTCACTCTAGACTATGG 59.082 40.741 0.00 0.00 0.00 2.74
227 228 7.068839 ACAACATACTTCACTCTAGACTATGGG 59.931 40.741 0.00 0.00 0.00 4.00
228 229 5.536916 ACATACTTCACTCTAGACTATGGGC 59.463 44.000 0.00 0.00 0.00 5.36
229 230 3.301274 ACTTCACTCTAGACTATGGGCC 58.699 50.000 0.00 0.00 0.00 5.80
230 231 3.052490 ACTTCACTCTAGACTATGGGCCT 60.052 47.826 4.53 0.00 0.00 5.19
231 232 2.950781 TCACTCTAGACTATGGGCCTG 58.049 52.381 4.53 0.00 0.00 4.85
232 233 1.967066 CACTCTAGACTATGGGCCTGG 59.033 57.143 4.53 0.00 0.00 4.45
233 234 1.133009 ACTCTAGACTATGGGCCTGGG 60.133 57.143 4.53 0.00 0.00 4.45
234 235 0.471971 TCTAGACTATGGGCCTGGGC 60.472 60.000 12.58 12.58 41.06 5.36
244 245 3.077907 GCCTGGGCCTGTACAAGA 58.922 61.111 4.53 0.00 34.56 3.02
245 246 1.377333 GCCTGGGCCTGTACAAGAC 60.377 63.158 4.53 0.00 34.56 3.01
246 247 2.066340 CCTGGGCCTGTACAAGACA 58.934 57.895 4.53 0.00 36.35 3.41
247 248 0.400213 CCTGGGCCTGTACAAGACAA 59.600 55.000 4.53 0.00 37.70 3.18
248 249 1.202879 CCTGGGCCTGTACAAGACAAA 60.203 52.381 4.53 0.00 37.70 2.83
249 250 1.880027 CTGGGCCTGTACAAGACAAAC 59.120 52.381 4.53 0.00 37.70 2.93
250 251 1.213182 TGGGCCTGTACAAGACAAACA 59.787 47.619 4.53 0.00 37.70 2.83
251 252 1.607148 GGGCCTGTACAAGACAAACAC 59.393 52.381 0.84 0.00 37.70 3.32
252 253 2.294074 GGCCTGTACAAGACAAACACA 58.706 47.619 0.00 0.00 37.70 3.72
253 254 2.685897 GGCCTGTACAAGACAAACACAA 59.314 45.455 0.00 0.00 37.70 3.33
254 255 3.488553 GGCCTGTACAAGACAAACACAAC 60.489 47.826 0.00 0.00 37.70 3.32
255 256 3.127895 GCCTGTACAAGACAAACACAACA 59.872 43.478 0.00 0.00 37.70 3.33
256 257 4.202010 GCCTGTACAAGACAAACACAACAT 60.202 41.667 0.00 0.00 37.70 2.71
257 258 5.008217 GCCTGTACAAGACAAACACAACATA 59.992 40.000 0.00 0.00 37.70 2.29
258 259 6.293955 GCCTGTACAAGACAAACACAACATAT 60.294 38.462 0.00 0.00 37.70 1.78
259 260 7.094975 GCCTGTACAAGACAAACACAACATATA 60.095 37.037 0.00 0.00 37.70 0.86
260 261 8.946085 CCTGTACAAGACAAACACAACATATAT 58.054 33.333 0.00 0.00 37.70 0.86
294 295 2.607187 CAGTACGGCACACTCCTTTAG 58.393 52.381 0.00 0.00 0.00 1.85
295 296 2.029290 CAGTACGGCACACTCCTTTAGT 60.029 50.000 0.00 0.00 39.81 2.24
296 297 2.631545 AGTACGGCACACTCCTTTAGTT 59.368 45.455 0.00 0.00 35.76 2.24
297 298 3.828451 AGTACGGCACACTCCTTTAGTTA 59.172 43.478 0.00 0.00 35.76 2.24
298 299 3.314541 ACGGCACACTCCTTTAGTTAG 57.685 47.619 0.00 0.00 35.76 2.34
299 300 2.895404 ACGGCACACTCCTTTAGTTAGA 59.105 45.455 0.00 0.00 35.76 2.10
300 301 3.322828 ACGGCACACTCCTTTAGTTAGAA 59.677 43.478 0.00 0.00 35.76 2.10
327 328 5.605564 TGAAATCCAGTATGACAAACACG 57.394 39.130 0.00 0.00 39.69 4.49
331 332 3.395639 TCCAGTATGACAAACACGAACC 58.604 45.455 0.00 0.00 39.69 3.62
336 337 4.287967 ACAAACACGAACCGCGCG 62.288 61.111 25.67 25.67 46.04 6.86
386 387 3.244112 GGGGGATAACGGATCTTACAGTG 60.244 52.174 0.00 0.00 34.66 3.66
421 422 8.428063 ACTTTAGCAGCATACTTCATCTATCTT 58.572 33.333 0.00 0.00 0.00 2.40
723 785 5.057819 AGAAGAAAAGAAGAAACTCCGGTC 58.942 41.667 0.00 0.00 0.00 4.79
725 787 1.509703 AAAGAAGAAACTCCGGTCGC 58.490 50.000 0.00 0.00 0.00 5.19
726 788 0.320508 AAGAAGAAACTCCGGTCGCC 60.321 55.000 0.00 0.00 0.00 5.54
728 790 4.736896 AGAAACTCCGGTCGCCGC 62.737 66.667 12.03 0.00 46.86 6.53
762 824 2.671963 GGGTGAACCGGTGAAGGC 60.672 66.667 8.52 0.00 36.71 4.35
764 826 1.966451 GGTGAACCGGTGAAGGCTG 60.966 63.158 8.52 0.00 33.69 4.85
765 827 1.070786 GTGAACCGGTGAAGGCTGA 59.929 57.895 8.52 0.00 33.69 4.26
766 828 0.321653 GTGAACCGGTGAAGGCTGAT 60.322 55.000 8.52 0.00 33.69 2.90
767 829 0.321564 TGAACCGGTGAAGGCTGATG 60.322 55.000 8.52 0.00 33.69 3.07
768 830 1.002134 AACCGGTGAAGGCTGATGG 60.002 57.895 8.52 0.00 33.69 3.51
954 1179 0.460987 CCACATCCAACGAGAGGAGC 60.461 60.000 0.00 0.00 38.83 4.70
1044 1294 2.608988 CTGGTGGTGGAGGAGGCT 60.609 66.667 0.00 0.00 0.00 4.58
1122 1372 4.129380 TCTCCATATTCAAAGGCGACATG 58.871 43.478 0.00 0.00 0.00 3.21
1423 1680 3.535629 CTCTTCCTGGTGCGTGGCA 62.536 63.158 0.00 0.00 35.60 4.92
1466 1723 1.076265 TCATGGAGATCGACCCCGT 60.076 57.895 8.97 0.00 37.05 5.28
1557 1814 1.205893 GAGGAGAGGCTTGACGACATT 59.794 52.381 0.00 0.00 0.00 2.71
2172 2429 0.033504 CCAAGGATACGCACGGCTAT 59.966 55.000 0.00 0.00 46.39 2.97
2595 2852 1.305623 CATCAAGGGGCCAGAGCTT 59.694 57.895 4.39 0.00 39.73 3.74
2796 3053 1.916506 TGGACGGAATGAATGCCAAA 58.083 45.000 0.00 0.00 0.00 3.28
3075 3332 3.711704 GGGAGGACATTGAGAAGGACATA 59.288 47.826 0.00 0.00 0.00 2.29
3083 3340 2.302260 TGAGAAGGACATAGAGAGGCG 58.698 52.381 0.00 0.00 0.00 5.52
3276 3540 0.884704 GCACTGAGTTCCGCTTTCCA 60.885 55.000 0.00 0.00 0.00 3.53
3277 3541 1.593196 CACTGAGTTCCGCTTTCCAA 58.407 50.000 0.00 0.00 0.00 3.53
3279 3543 1.134220 ACTGAGTTCCGCTTTCCAACA 60.134 47.619 0.00 0.00 0.00 3.33
3281 3545 0.234884 GAGTTCCGCTTTCCAACACG 59.765 55.000 0.00 0.00 0.00 4.49
3345 3609 3.805207 TGACGAGGATGAAGACGATCTA 58.195 45.455 0.00 0.00 0.00 1.98
3378 3642 7.888021 TGATCCAGTAACCATTGTTAGAACATT 59.112 33.333 0.00 0.00 37.62 2.71
3382 3646 7.807907 CCAGTAACCATTGTTAGAACATTGAAC 59.192 37.037 15.47 11.28 40.74 3.18
3398 3662 7.259088 ACATTGAACTAGGAGTACCAGAATT 57.741 36.000 0.00 0.00 38.94 2.17
3498 7731 8.040727 ACATGCATTACAGACTTACAGTTGATA 58.959 33.333 0.00 0.00 0.00 2.15
3499 7732 7.827819 TGCATTACAGACTTACAGTTGATAC 57.172 36.000 0.00 0.00 0.00 2.24
3501 7734 7.545615 TGCATTACAGACTTACAGTTGATACAG 59.454 37.037 0.00 0.00 0.00 2.74
3502 7735 7.759886 GCATTACAGACTTACAGTTGATACAGA 59.240 37.037 0.00 0.00 0.00 3.41
3503 7736 9.295214 CATTACAGACTTACAGTTGATACAGAG 57.705 37.037 0.00 0.00 0.00 3.35
3509 7742 9.688091 AGACTTACAGTTGATACAGAGATAAGA 57.312 33.333 0.00 0.00 0.00 2.10
3512 7745 9.743057 CTTACAGTTGATACAGAGATAAGAAGG 57.257 37.037 0.00 0.00 0.00 3.46
3514 7747 7.777095 ACAGTTGATACAGAGATAAGAAGGTC 58.223 38.462 0.00 0.00 0.00 3.85
3526 7760 1.884235 AGAAGGTCTTGTGCTTTCCG 58.116 50.000 0.00 0.00 0.00 4.30
3548 7782 4.638421 CGTTCATTTGTAGGCAGGGATAAA 59.362 41.667 0.00 0.00 0.00 1.40
3579 7813 2.492484 ACTAGACTAAGCCGTGAACTGG 59.508 50.000 0.00 0.00 0.00 4.00
3743 7985 5.104374 AGTTGAAGGCAAATATTTCATGCG 58.896 37.500 0.00 0.00 40.94 4.73
3775 8027 0.618458 ATACGTGTGGCTCCCAACAT 59.382 50.000 0.00 0.00 34.18 2.71
3776 8028 0.321210 TACGTGTGGCTCCCAACATG 60.321 55.000 0.00 0.00 34.18 3.21
3777 8029 1.302431 CGTGTGGCTCCCAACATGA 60.302 57.895 0.00 0.00 34.18 3.07
3778 8030 1.300971 CGTGTGGCTCCCAACATGAG 61.301 60.000 0.00 0.00 34.18 2.90
3782 8034 1.541588 GTGGCTCCCAACATGAGTTTC 59.458 52.381 0.00 0.00 35.28 2.78
3784 8036 2.158475 TGGCTCCCAACATGAGTTTCTT 60.158 45.455 0.00 0.00 35.28 2.52
3785 8037 3.073798 TGGCTCCCAACATGAGTTTCTTA 59.926 43.478 0.00 0.00 35.28 2.10
3786 8038 4.263905 TGGCTCCCAACATGAGTTTCTTAT 60.264 41.667 0.00 0.00 35.28 1.73
3787 8039 4.706962 GGCTCCCAACATGAGTTTCTTATT 59.293 41.667 0.00 0.00 35.28 1.40
3789 8041 6.547510 GGCTCCCAACATGAGTTTCTTATTAT 59.452 38.462 0.00 0.00 35.28 1.28
3790 8042 7.068716 GGCTCCCAACATGAGTTTCTTATTATT 59.931 37.037 0.00 0.00 35.28 1.40
3793 8045 9.527157 TCCCAACATGAGTTTCTTATTATTGAA 57.473 29.630 0.00 0.00 35.28 2.69
3794 8046 9.573133 CCCAACATGAGTTTCTTATTATTGAAC 57.427 33.333 0.00 0.00 35.28 3.18
3795 8047 9.573133 CCAACATGAGTTTCTTATTATTGAACC 57.427 33.333 0.00 0.00 35.28 3.62
3798 8050 9.520515 ACATGAGTTTCTTATTATTGAACCTGT 57.479 29.630 0.00 0.00 0.00 4.00
3817 8069 6.000219 ACCTGTAAGAACTACGTAGAGTTGA 59.000 40.000 28.74 8.21 39.79 3.18
3818 8070 6.488006 ACCTGTAAGAACTACGTAGAGTTGAA 59.512 38.462 28.74 6.86 39.79 2.69
3819 8071 7.022384 CCTGTAAGAACTACGTAGAGTTGAAG 58.978 42.308 28.74 15.59 39.79 3.02
3821 8073 4.437772 AGAACTACGTAGAGTTGAAGGC 57.562 45.455 28.74 4.38 39.79 4.35
3824 8076 4.595762 ACTACGTAGAGTTGAAGGCAAA 57.404 40.909 28.74 0.00 35.42 3.68
3825 8077 5.148651 ACTACGTAGAGTTGAAGGCAAAT 57.851 39.130 28.74 0.00 35.42 2.32
3827 8079 6.875076 ACTACGTAGAGTTGAAGGCAAATAT 58.125 36.000 28.74 0.00 35.42 1.28
3828 8080 7.328737 ACTACGTAGAGTTGAAGGCAAATATT 58.671 34.615 28.74 0.00 35.42 1.28
3829 8081 7.822822 ACTACGTAGAGTTGAAGGCAAATATTT 59.177 33.333 28.74 0.00 35.42 1.40
3830 8082 7.073342 ACGTAGAGTTGAAGGCAAATATTTC 57.927 36.000 0.00 0.00 35.42 2.17
3831 8083 6.653320 ACGTAGAGTTGAAGGCAAATATTTCA 59.347 34.615 0.00 0.00 35.42 2.69
3833 8085 7.641411 CGTAGAGTTGAAGGCAAATATTTCATG 59.359 37.037 0.00 0.00 35.42 3.07
3840 8092 1.860326 GCAAATATTTCATGCCGGTGC 59.140 47.619 1.90 0.00 34.03 5.01
3841 8093 2.481795 GCAAATATTTCATGCCGGTGCT 60.482 45.455 1.90 0.00 38.71 4.40
3842 8094 3.784338 CAAATATTTCATGCCGGTGCTT 58.216 40.909 1.90 0.00 38.71 3.91
3844 8096 4.836125 AATATTTCATGCCGGTGCTTAG 57.164 40.909 1.90 0.00 38.71 2.18
3845 8097 0.740737 ATTTCATGCCGGTGCTTAGC 59.259 50.000 1.90 0.00 38.71 3.09
3846 8098 0.607762 TTTCATGCCGGTGCTTAGCA 60.608 50.000 1.39 1.39 41.50 3.49
3847 8099 0.607762 TTCATGCCGGTGCTTAGCAA 60.608 50.000 9.05 0.00 41.47 3.91
3854 8254 0.884704 CGGTGCTTAGCAACCTGTGT 60.885 55.000 17.22 0.00 44.30 3.72
3859 8259 0.250901 CTTAGCAACCTGTGTGGCCT 60.251 55.000 3.32 0.00 42.90 5.19
3894 8294 0.527565 GGTTAGTCCGGCTTGTCGTA 59.472 55.000 0.00 0.00 0.00 3.43
3962 8362 3.960755 GCTTCCTACTTTGGGGCAATTAT 59.039 43.478 0.00 0.00 0.00 1.28
3963 8363 4.405680 GCTTCCTACTTTGGGGCAATTATT 59.594 41.667 0.00 0.00 0.00 1.40
3964 8364 5.596772 GCTTCCTACTTTGGGGCAATTATTA 59.403 40.000 0.00 0.00 0.00 0.98
3988 8389 0.968405 TTGAAAAGAGCATGGTGGGC 59.032 50.000 0.00 0.00 0.00 5.36
4008 8409 2.753452 GCTGGAACTTAAGGCTTAACCC 59.247 50.000 15.49 15.69 40.58 4.11
4009 8410 3.812882 GCTGGAACTTAAGGCTTAACCCA 60.813 47.826 15.49 18.70 40.58 4.51
4010 8411 4.403734 CTGGAACTTAAGGCTTAACCCAA 58.596 43.478 15.49 0.00 40.58 4.12
4011 8412 5.005628 TGGAACTTAAGGCTTAACCCAAT 57.994 39.130 15.49 1.02 40.58 3.16
4013 8414 6.553857 TGGAACTTAAGGCTTAACCCAATTA 58.446 36.000 15.49 0.00 40.58 1.40
4014 8415 7.186268 TGGAACTTAAGGCTTAACCCAATTAT 58.814 34.615 15.49 0.00 40.58 1.28
4015 8416 7.676468 TGGAACTTAAGGCTTAACCCAATTATT 59.324 33.333 15.49 1.38 40.58 1.40
4016 8417 9.192642 GGAACTTAAGGCTTAACCCAATTATTA 57.807 33.333 15.49 0.00 40.58 0.98
4090 8501 3.594134 TGCTTGTCCAAACAAAGTTTGG 58.406 40.909 27.44 27.44 44.53 3.28
4102 8513 3.385755 ACAAAGTTTGGCTTTCATGCTCT 59.614 39.130 19.45 0.00 44.95 4.09
4143 8558 6.992063 ATGCTTTAAAGATTCAGTCACGAT 57.008 33.333 19.48 0.00 0.00 3.73
4162 8577 5.059587 CACGATTTTCGGAAAATGTGTCATG 59.940 40.000 28.09 13.05 45.59 3.07
4163 8578 5.153513 CGATTTTCGGAAAATGTGTCATGT 58.846 37.500 28.09 6.65 40.97 3.21
4164 8579 6.072948 ACGATTTTCGGAAAATGTGTCATGTA 60.073 34.615 28.09 0.00 45.59 2.29
4184 8599 9.888878 TCATGTAGTAATACATTAACTAGTCGC 57.111 33.333 12.94 0.00 38.51 5.19
4247 10105 7.886405 AGAAGGTCAAGAAGTCGTAAATTAC 57.114 36.000 0.00 0.00 0.00 1.89
4248 10106 7.439381 AGAAGGTCAAGAAGTCGTAAATTACA 58.561 34.615 3.91 0.00 0.00 2.41
4261 10119 7.922278 AGTCGTAAATTACAAACAGTGTCTACA 59.078 33.333 0.00 0.00 41.98 2.74
4353 10211 9.920133 TTCATTTTCATGACAAATATTTTCGGA 57.080 25.926 12.49 0.72 39.28 4.55
4354 10212 9.352784 TCATTTTCATGACAAATATTTTCGGAC 57.647 29.630 12.49 0.00 34.22 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.873164 ACGTTTTCTAACATGGTATCAGACC 59.127 40.000 0.00 0.00 40.42 3.85
12 13 6.588756 TCACGTTTTCTAACATGGTATCAGAC 59.411 38.462 0.00 0.00 33.75 3.51
13 14 6.693466 TCACGTTTTCTAACATGGTATCAGA 58.307 36.000 0.00 0.00 33.75 3.27
14 15 6.036083 CCTCACGTTTTCTAACATGGTATCAG 59.964 42.308 0.00 0.00 33.75 2.90
15 16 5.872617 CCTCACGTTTTCTAACATGGTATCA 59.127 40.000 0.00 0.00 33.75 2.15
16 17 6.103997 TCCTCACGTTTTCTAACATGGTATC 58.896 40.000 0.00 0.00 33.75 2.24
17 18 6.045072 TCCTCACGTTTTCTAACATGGTAT 57.955 37.500 0.00 0.00 33.75 2.73
18 19 5.471556 TCCTCACGTTTTCTAACATGGTA 57.528 39.130 0.00 0.00 33.75 3.25
19 20 4.345859 TCCTCACGTTTTCTAACATGGT 57.654 40.909 0.00 0.00 33.75 3.55
20 21 4.994852 TCTTCCTCACGTTTTCTAACATGG 59.005 41.667 0.00 0.00 33.75 3.66
21 22 5.926542 TCTCTTCCTCACGTTTTCTAACATG 59.073 40.000 0.00 0.00 33.75 3.21
22 23 6.015350 TCTCTCTTCCTCACGTTTTCTAACAT 60.015 38.462 0.00 0.00 33.75 2.71
23 24 5.301045 TCTCTCTTCCTCACGTTTTCTAACA 59.699 40.000 0.00 0.00 33.75 2.41
24 25 5.770417 TCTCTCTTCCTCACGTTTTCTAAC 58.230 41.667 0.00 0.00 0.00 2.34
25 26 6.401047 TTCTCTCTTCCTCACGTTTTCTAA 57.599 37.500 0.00 0.00 0.00 2.10
26 27 6.208797 TCATTCTCTCTTCCTCACGTTTTCTA 59.791 38.462 0.00 0.00 0.00 2.10
27 28 4.939052 TTCTCTCTTCCTCACGTTTTCT 57.061 40.909 0.00 0.00 0.00 2.52
28 29 5.119434 GTCATTCTCTCTTCCTCACGTTTTC 59.881 44.000 0.00 0.00 0.00 2.29
29 30 4.991687 GTCATTCTCTCTTCCTCACGTTTT 59.008 41.667 0.00 0.00 0.00 2.43
30 31 4.561105 GTCATTCTCTCTTCCTCACGTTT 58.439 43.478 0.00 0.00 0.00 3.60
31 32 3.056465 GGTCATTCTCTCTTCCTCACGTT 60.056 47.826 0.00 0.00 0.00 3.99
32 33 2.494073 GGTCATTCTCTCTTCCTCACGT 59.506 50.000 0.00 0.00 0.00 4.49
33 34 2.478709 CGGTCATTCTCTCTTCCTCACG 60.479 54.545 0.00 0.00 0.00 4.35
34 35 2.755655 TCGGTCATTCTCTCTTCCTCAC 59.244 50.000 0.00 0.00 0.00 3.51
35 36 3.087370 TCGGTCATTCTCTCTTCCTCA 57.913 47.619 0.00 0.00 0.00 3.86
36 37 3.193691 TGTTCGGTCATTCTCTCTTCCTC 59.806 47.826 0.00 0.00 0.00 3.71
37 38 3.165875 TGTTCGGTCATTCTCTCTTCCT 58.834 45.455 0.00 0.00 0.00 3.36
38 39 3.056465 ACTGTTCGGTCATTCTCTCTTCC 60.056 47.826 0.00 0.00 0.00 3.46
39 40 4.181309 ACTGTTCGGTCATTCTCTCTTC 57.819 45.455 0.00 0.00 0.00 2.87
40 41 4.608948 AACTGTTCGGTCATTCTCTCTT 57.391 40.909 0.00 0.00 0.00 2.85
41 42 4.608948 AAACTGTTCGGTCATTCTCTCT 57.391 40.909 0.00 0.00 0.00 3.10
42 43 4.991687 AGAAAACTGTTCGGTCATTCTCTC 59.008 41.667 0.00 0.00 0.00 3.20
43 44 4.752101 CAGAAAACTGTTCGGTCATTCTCT 59.248 41.667 0.00 0.00 0.00 3.10
44 45 4.511826 ACAGAAAACTGTTCGGTCATTCTC 59.488 41.667 0.00 0.00 33.11 2.87
45 46 4.451900 ACAGAAAACTGTTCGGTCATTCT 58.548 39.130 0.00 0.00 33.11 2.40
46 47 4.813296 ACAGAAAACTGTTCGGTCATTC 57.187 40.909 0.00 0.00 33.11 2.67
47 48 6.485313 TCAATACAGAAAACTGTTCGGTCATT 59.515 34.615 8.14 0.00 38.64 2.57
48 49 5.995282 TCAATACAGAAAACTGTTCGGTCAT 59.005 36.000 8.14 0.00 38.64 3.06
49 50 5.361427 TCAATACAGAAAACTGTTCGGTCA 58.639 37.500 8.14 0.00 38.64 4.02
50 51 5.107065 CCTCAATACAGAAAACTGTTCGGTC 60.107 44.000 8.14 0.00 38.64 4.79
51 52 4.755123 CCTCAATACAGAAAACTGTTCGGT 59.245 41.667 8.14 0.00 38.64 4.69
52 53 4.994852 TCCTCAATACAGAAAACTGTTCGG 59.005 41.667 8.14 3.47 38.64 4.30
53 54 5.120830 CCTCCTCAATACAGAAAACTGTTCG 59.879 44.000 8.14 0.00 38.64 3.95
54 55 6.231211 TCCTCCTCAATACAGAAAACTGTTC 58.769 40.000 8.14 0.00 38.64 3.18
55 56 6.043243 TCTCCTCCTCAATACAGAAAACTGTT 59.957 38.462 8.14 0.00 38.64 3.16
56 57 5.544176 TCTCCTCCTCAATACAGAAAACTGT 59.456 40.000 7.94 7.94 41.00 3.55
57 58 6.042638 TCTCCTCCTCAATACAGAAAACTG 57.957 41.667 0.00 0.00 0.00 3.16
58 59 6.019748 TCTCTCCTCCTCAATACAGAAAACT 58.980 40.000 0.00 0.00 0.00 2.66
59 60 6.153680 TCTCTCTCCTCCTCAATACAGAAAAC 59.846 42.308 0.00 0.00 0.00 2.43
60 61 6.256819 TCTCTCTCCTCCTCAATACAGAAAA 58.743 40.000 0.00 0.00 0.00 2.29
61 62 5.832221 TCTCTCTCCTCCTCAATACAGAAA 58.168 41.667 0.00 0.00 0.00 2.52
62 63 5.192722 TCTCTCTCTCCTCCTCAATACAGAA 59.807 44.000 0.00 0.00 0.00 3.02
63 64 4.724293 TCTCTCTCTCCTCCTCAATACAGA 59.276 45.833 0.00 0.00 0.00 3.41
64 65 5.047566 TCTCTCTCTCCTCCTCAATACAG 57.952 47.826 0.00 0.00 0.00 2.74
65 66 5.661503 ATCTCTCTCTCCTCCTCAATACA 57.338 43.478 0.00 0.00 0.00 2.29
66 67 8.325787 TGTATATCTCTCTCTCCTCCTCAATAC 58.674 40.741 0.00 0.00 0.00 1.89
67 68 8.456221 TGTATATCTCTCTCTCCTCCTCAATA 57.544 38.462 0.00 0.00 0.00 1.90
68 69 7.341885 TGTATATCTCTCTCTCCTCCTCAAT 57.658 40.000 0.00 0.00 0.00 2.57
69 70 6.771934 TGTATATCTCTCTCTCCTCCTCAA 57.228 41.667 0.00 0.00 0.00 3.02
70 71 6.240147 CCTTGTATATCTCTCTCTCCTCCTCA 60.240 46.154 0.00 0.00 0.00 3.86
71 72 6.180472 CCTTGTATATCTCTCTCTCCTCCTC 58.820 48.000 0.00 0.00 0.00 3.71
72 73 5.615261 ACCTTGTATATCTCTCTCTCCTCCT 59.385 44.000 0.00 0.00 0.00 3.69
73 74 5.887754 ACCTTGTATATCTCTCTCTCCTCC 58.112 45.833 0.00 0.00 0.00 4.30
74 75 7.940137 TGTAACCTTGTATATCTCTCTCTCCTC 59.060 40.741 0.00 0.00 0.00 3.71
75 76 7.817440 TGTAACCTTGTATATCTCTCTCTCCT 58.183 38.462 0.00 0.00 0.00 3.69
76 77 8.519526 CATGTAACCTTGTATATCTCTCTCTCC 58.480 40.741 0.00 0.00 0.00 3.71
77 78 8.519526 CCATGTAACCTTGTATATCTCTCTCTC 58.480 40.741 0.00 0.00 0.00 3.20
78 79 7.453126 CCCATGTAACCTTGTATATCTCTCTCT 59.547 40.741 0.00 0.00 0.00 3.10
79 80 7.607250 CCCATGTAACCTTGTATATCTCTCTC 58.393 42.308 0.00 0.00 0.00 3.20
80 81 6.014156 GCCCATGTAACCTTGTATATCTCTCT 60.014 42.308 0.00 0.00 0.00 3.10
81 82 6.166982 GCCCATGTAACCTTGTATATCTCTC 58.833 44.000 0.00 0.00 0.00 3.20
82 83 5.013183 GGCCCATGTAACCTTGTATATCTCT 59.987 44.000 0.00 0.00 0.00 3.10
83 84 5.013183 AGGCCCATGTAACCTTGTATATCTC 59.987 44.000 0.00 0.00 0.00 2.75
84 85 4.913968 AGGCCCATGTAACCTTGTATATCT 59.086 41.667 0.00 0.00 0.00 1.98
85 86 5.003804 CAGGCCCATGTAACCTTGTATATC 58.996 45.833 0.00 0.00 0.00 1.63
86 87 4.202567 CCAGGCCCATGTAACCTTGTATAT 60.203 45.833 0.00 0.00 0.00 0.86
87 88 3.137544 CCAGGCCCATGTAACCTTGTATA 59.862 47.826 0.00 0.00 0.00 1.47
88 89 2.091885 CCAGGCCCATGTAACCTTGTAT 60.092 50.000 0.00 0.00 0.00 2.29
89 90 1.283613 CCAGGCCCATGTAACCTTGTA 59.716 52.381 0.00 0.00 0.00 2.41
90 91 0.039618 CCAGGCCCATGTAACCTTGT 59.960 55.000 0.00 0.00 0.00 3.16
91 92 0.684153 CCCAGGCCCATGTAACCTTG 60.684 60.000 0.00 0.00 0.00 3.61
92 93 1.697297 CCCAGGCCCATGTAACCTT 59.303 57.895 0.00 0.00 0.00 3.50
93 94 2.996330 GCCCAGGCCCATGTAACCT 61.996 63.158 0.00 0.00 34.56 3.50
94 95 2.442087 GCCCAGGCCCATGTAACC 60.442 66.667 0.00 0.00 34.56 2.85
104 105 0.978146 TTCTAGAGTGAGGCCCAGGC 60.978 60.000 0.00 0.00 41.06 4.85
105 106 1.799933 ATTCTAGAGTGAGGCCCAGG 58.200 55.000 0.00 0.00 0.00 4.45
106 107 3.260380 CCATATTCTAGAGTGAGGCCCAG 59.740 52.174 0.00 0.00 0.00 4.45
107 108 3.242867 CCATATTCTAGAGTGAGGCCCA 58.757 50.000 0.00 0.00 0.00 5.36
108 109 2.569404 CCCATATTCTAGAGTGAGGCCC 59.431 54.545 0.00 0.00 0.00 5.80
109 110 2.027653 GCCCATATTCTAGAGTGAGGCC 60.028 54.545 11.61 0.00 31.59 5.19
110 111 2.027653 GGCCCATATTCTAGAGTGAGGC 60.028 54.545 13.37 13.37 37.14 4.70
111 112 3.260380 CAGGCCCATATTCTAGAGTGAGG 59.740 52.174 0.00 0.00 0.00 3.86
112 113 3.260380 CCAGGCCCATATTCTAGAGTGAG 59.740 52.174 0.00 0.00 0.00 3.51
113 114 3.242867 CCAGGCCCATATTCTAGAGTGA 58.757 50.000 0.00 0.00 0.00 3.41
114 115 2.304180 CCCAGGCCCATATTCTAGAGTG 59.696 54.545 0.00 0.00 0.00 3.51
115 116 2.625639 CCCAGGCCCATATTCTAGAGT 58.374 52.381 0.00 0.00 0.00 3.24
116 117 1.280421 GCCCAGGCCCATATTCTAGAG 59.720 57.143 0.00 0.00 34.56 2.43
117 118 1.362224 GCCCAGGCCCATATTCTAGA 58.638 55.000 0.00 0.00 34.56 2.43
118 119 1.067295 TGCCCAGGCCCATATTCTAG 58.933 55.000 6.14 0.00 41.09 2.43
119 120 1.355381 CATGCCCAGGCCCATATTCTA 59.645 52.381 6.14 0.00 41.09 2.10
120 121 0.113776 CATGCCCAGGCCCATATTCT 59.886 55.000 6.14 0.00 41.09 2.40
121 122 0.178953 ACATGCCCAGGCCCATATTC 60.179 55.000 6.14 0.00 41.09 1.75
122 123 1.157111 TACATGCCCAGGCCCATATT 58.843 50.000 6.14 0.00 41.09 1.28
123 124 0.405585 GTACATGCCCAGGCCCATAT 59.594 55.000 6.14 0.00 41.09 1.78
124 125 0.990818 TGTACATGCCCAGGCCCATA 60.991 55.000 6.14 0.00 41.09 2.74
125 126 1.873178 TTGTACATGCCCAGGCCCAT 61.873 55.000 6.14 0.00 41.09 4.00
126 127 2.497792 CTTGTACATGCCCAGGCCCA 62.498 60.000 6.14 0.00 41.09 5.36
127 128 1.754234 CTTGTACATGCCCAGGCCC 60.754 63.158 6.14 0.00 41.09 5.80
128 129 1.032114 GTCTTGTACATGCCCAGGCC 61.032 60.000 6.14 0.00 41.09 5.19
129 130 0.322456 TGTCTTGTACATGCCCAGGC 60.322 55.000 0.38 0.38 35.78 4.85
130 131 2.198827 TTGTCTTGTACATGCCCAGG 57.801 50.000 0.00 0.00 38.10 4.45
131 132 2.884012 TGTTTGTCTTGTACATGCCCAG 59.116 45.455 0.00 0.00 38.10 4.45
132 133 2.621055 GTGTTTGTCTTGTACATGCCCA 59.379 45.455 0.00 0.00 38.10 5.36
133 134 2.621055 TGTGTTTGTCTTGTACATGCCC 59.379 45.455 0.00 0.00 38.10 5.36
134 135 3.980646 TGTGTTTGTCTTGTACATGCC 57.019 42.857 0.00 0.00 38.10 4.40
135 136 8.450964 AGTATATTGTGTTTGTCTTGTACATGC 58.549 33.333 0.00 0.00 38.10 4.06
138 139 9.549078 TGAAGTATATTGTGTTTGTCTTGTACA 57.451 29.630 0.00 0.00 35.88 2.90
139 140 9.807386 GTGAAGTATATTGTGTTTGTCTTGTAC 57.193 33.333 0.00 0.00 0.00 2.90
140 141 9.772973 AGTGAAGTATATTGTGTTTGTCTTGTA 57.227 29.630 0.00 0.00 0.00 2.41
141 142 8.677148 AGTGAAGTATATTGTGTTTGTCTTGT 57.323 30.769 0.00 0.00 0.00 3.16
142 143 8.993121 AGAGTGAAGTATATTGTGTTTGTCTTG 58.007 33.333 0.00 0.00 0.00 3.02
144 145 9.862371 CTAGAGTGAAGTATATTGTGTTTGTCT 57.138 33.333 0.00 0.00 0.00 3.41
145 146 9.856488 TCTAGAGTGAAGTATATTGTGTTTGTC 57.144 33.333 0.00 0.00 0.00 3.18
146 147 9.640963 GTCTAGAGTGAAGTATATTGTGTTTGT 57.359 33.333 0.00 0.00 0.00 2.83
147 148 9.862371 AGTCTAGAGTGAAGTATATTGTGTTTG 57.138 33.333 0.00 0.00 0.00 2.93
152 153 9.303116 CCCATAGTCTAGAGTGAAGTATATTGT 57.697 37.037 10.51 0.00 0.00 2.71
153 154 8.247562 GCCCATAGTCTAGAGTGAAGTATATTG 58.752 40.741 10.51 0.00 0.00 1.90
154 155 7.397761 GGCCCATAGTCTAGAGTGAAGTATATT 59.602 40.741 10.51 0.00 0.00 1.28
155 156 6.893005 GGCCCATAGTCTAGAGTGAAGTATAT 59.107 42.308 10.51 0.00 0.00 0.86
156 157 6.045695 AGGCCCATAGTCTAGAGTGAAGTATA 59.954 42.308 10.51 0.00 0.00 1.47
157 158 5.081032 GGCCCATAGTCTAGAGTGAAGTAT 58.919 45.833 10.51 0.00 0.00 2.12
158 159 4.168283 AGGCCCATAGTCTAGAGTGAAGTA 59.832 45.833 10.51 0.00 0.00 2.24
159 160 3.052490 AGGCCCATAGTCTAGAGTGAAGT 60.052 47.826 10.51 0.00 0.00 3.01
160 161 3.320541 CAGGCCCATAGTCTAGAGTGAAG 59.679 52.174 10.51 0.13 0.00 3.02
161 162 3.300388 CAGGCCCATAGTCTAGAGTGAA 58.700 50.000 10.51 0.00 0.00 3.18
162 163 2.424957 CCAGGCCCATAGTCTAGAGTGA 60.425 54.545 10.51 0.00 0.00 3.41
163 164 1.967066 CCAGGCCCATAGTCTAGAGTG 59.033 57.143 10.51 1.84 0.00 3.51
164 165 1.133009 CCCAGGCCCATAGTCTAGAGT 60.133 57.143 0.00 5.21 0.00 3.24
165 166 1.638529 CCCAGGCCCATAGTCTAGAG 58.361 60.000 0.00 0.00 0.00 2.43
166 167 0.471971 GCCCAGGCCCATAGTCTAGA 60.472 60.000 0.00 0.00 34.56 2.43
167 168 2.062070 GCCCAGGCCCATAGTCTAG 58.938 63.158 0.00 0.00 34.56 2.43
168 169 4.313523 GCCCAGGCCCATAGTCTA 57.686 61.111 0.00 0.00 34.56 2.59
178 179 1.377333 GTCTTGTACAGGCCCAGGC 60.377 63.158 0.00 0.00 41.06 4.85
179 180 0.400213 TTGTCTTGTACAGGCCCAGG 59.600 55.000 0.00 0.00 39.87 4.45
180 181 1.880027 GTTTGTCTTGTACAGGCCCAG 59.120 52.381 0.00 0.00 39.87 4.45
181 182 1.213182 TGTTTGTCTTGTACAGGCCCA 59.787 47.619 0.00 0.00 39.87 5.36
182 183 1.607148 GTGTTTGTCTTGTACAGGCCC 59.393 52.381 0.00 0.00 39.87 5.80
183 184 2.294074 TGTGTTTGTCTTGTACAGGCC 58.706 47.619 0.00 0.00 39.87 5.19
184 185 3.127895 TGTTGTGTTTGTCTTGTACAGGC 59.872 43.478 0.00 0.00 39.87 4.85
185 186 4.955925 TGTTGTGTTTGTCTTGTACAGG 57.044 40.909 0.00 0.00 39.87 4.00
186 187 7.246674 AGTATGTTGTGTTTGTCTTGTACAG 57.753 36.000 0.00 0.00 39.87 2.74
187 188 7.334671 TGAAGTATGTTGTGTTTGTCTTGTACA 59.665 33.333 0.00 0.00 35.88 2.90
188 189 7.638683 GTGAAGTATGTTGTGTTTGTCTTGTAC 59.361 37.037 0.00 0.00 0.00 2.90
189 190 7.551262 AGTGAAGTATGTTGTGTTTGTCTTGTA 59.449 33.333 0.00 0.00 0.00 2.41
190 191 6.374333 AGTGAAGTATGTTGTGTTTGTCTTGT 59.626 34.615 0.00 0.00 0.00 3.16
191 192 6.785191 AGTGAAGTATGTTGTGTTTGTCTTG 58.215 36.000 0.00 0.00 0.00 3.02
192 193 6.823689 AGAGTGAAGTATGTTGTGTTTGTCTT 59.176 34.615 0.00 0.00 0.00 3.01
193 194 6.349300 AGAGTGAAGTATGTTGTGTTTGTCT 58.651 36.000 0.00 0.00 0.00 3.41
194 195 6.604735 AGAGTGAAGTATGTTGTGTTTGTC 57.395 37.500 0.00 0.00 0.00 3.18
195 196 7.438459 GTCTAGAGTGAAGTATGTTGTGTTTGT 59.562 37.037 0.00 0.00 0.00 2.83
196 197 7.653713 AGTCTAGAGTGAAGTATGTTGTGTTTG 59.346 37.037 0.00 0.00 0.00 2.93
197 198 7.727181 AGTCTAGAGTGAAGTATGTTGTGTTT 58.273 34.615 0.00 0.00 0.00 2.83
198 199 7.291411 AGTCTAGAGTGAAGTATGTTGTGTT 57.709 36.000 0.00 0.00 0.00 3.32
199 200 6.902771 AGTCTAGAGTGAAGTATGTTGTGT 57.097 37.500 0.00 0.00 0.00 3.72
200 201 7.918033 CCATAGTCTAGAGTGAAGTATGTTGTG 59.082 40.741 10.51 0.00 0.00 3.33
201 202 7.068839 CCCATAGTCTAGAGTGAAGTATGTTGT 59.931 40.741 10.51 0.00 0.00 3.32
202 203 7.429633 CCCATAGTCTAGAGTGAAGTATGTTG 58.570 42.308 10.51 0.00 0.00 3.33
203 204 6.041069 GCCCATAGTCTAGAGTGAAGTATGTT 59.959 42.308 10.51 0.00 0.00 2.71
204 205 5.536916 GCCCATAGTCTAGAGTGAAGTATGT 59.463 44.000 10.51 0.00 0.00 2.29
205 206 5.047660 GGCCCATAGTCTAGAGTGAAGTATG 60.048 48.000 10.51 5.45 0.00 2.39
206 207 5.081032 GGCCCATAGTCTAGAGTGAAGTAT 58.919 45.833 10.51 0.00 0.00 2.12
207 208 4.168283 AGGCCCATAGTCTAGAGTGAAGTA 59.832 45.833 10.51 0.00 0.00 2.24
208 209 3.052490 AGGCCCATAGTCTAGAGTGAAGT 60.052 47.826 10.51 0.00 0.00 3.01
209 210 3.320541 CAGGCCCATAGTCTAGAGTGAAG 59.679 52.174 10.51 0.13 0.00 3.02
210 211 3.300388 CAGGCCCATAGTCTAGAGTGAA 58.700 50.000 10.51 0.00 0.00 3.18
211 212 2.424957 CCAGGCCCATAGTCTAGAGTGA 60.425 54.545 10.51 0.00 0.00 3.41
212 213 1.967066 CCAGGCCCATAGTCTAGAGTG 59.033 57.143 10.51 1.84 0.00 3.51
213 214 1.133009 CCCAGGCCCATAGTCTAGAGT 60.133 57.143 0.00 5.21 0.00 3.24
214 215 1.638529 CCCAGGCCCATAGTCTAGAG 58.361 60.000 0.00 0.00 0.00 2.43
215 216 0.471971 GCCCAGGCCCATAGTCTAGA 60.472 60.000 0.00 0.00 34.56 2.43
216 217 2.062070 GCCCAGGCCCATAGTCTAG 58.938 63.158 0.00 0.00 34.56 2.43
217 218 4.313523 GCCCAGGCCCATAGTCTA 57.686 61.111 0.00 0.00 34.56 2.59
227 228 1.377333 GTCTTGTACAGGCCCAGGC 60.377 63.158 0.00 0.00 41.06 4.85
228 229 0.400213 TTGTCTTGTACAGGCCCAGG 59.600 55.000 0.00 0.00 39.87 4.45
229 230 1.880027 GTTTGTCTTGTACAGGCCCAG 59.120 52.381 0.00 0.00 39.87 4.45
230 231 1.213182 TGTTTGTCTTGTACAGGCCCA 59.787 47.619 0.00 0.00 39.87 5.36
231 232 1.607148 GTGTTTGTCTTGTACAGGCCC 59.393 52.381 0.00 0.00 39.87 5.80
232 233 2.294074 TGTGTTTGTCTTGTACAGGCC 58.706 47.619 0.00 0.00 39.87 5.19
233 234 3.127895 TGTTGTGTTTGTCTTGTACAGGC 59.872 43.478 0.00 0.00 39.87 4.85
234 235 4.955925 TGTTGTGTTTGTCTTGTACAGG 57.044 40.909 0.00 0.00 39.87 4.00
256 257 8.464404 GCCGTACTGGATGATGTTAAGTATATA 58.536 37.037 7.77 0.00 42.00 0.86
257 258 7.039293 TGCCGTACTGGATGATGTTAAGTATAT 60.039 37.037 7.77 0.00 42.00 0.86
258 259 6.265876 TGCCGTACTGGATGATGTTAAGTATA 59.734 38.462 7.77 0.00 42.00 1.47
259 260 5.069914 TGCCGTACTGGATGATGTTAAGTAT 59.930 40.000 7.77 0.00 42.00 2.12
260 261 4.403113 TGCCGTACTGGATGATGTTAAGTA 59.597 41.667 7.77 0.00 42.00 2.24
261 262 3.196901 TGCCGTACTGGATGATGTTAAGT 59.803 43.478 7.77 0.00 42.00 2.24
262 263 3.555956 GTGCCGTACTGGATGATGTTAAG 59.444 47.826 7.77 0.00 42.00 1.85
263 264 3.055747 TGTGCCGTACTGGATGATGTTAA 60.056 43.478 7.77 0.00 42.00 2.01
264 265 2.498078 TGTGCCGTACTGGATGATGTTA 59.502 45.455 7.77 0.00 42.00 2.41
265 266 1.277842 TGTGCCGTACTGGATGATGTT 59.722 47.619 7.77 0.00 42.00 2.71
266 267 0.901827 TGTGCCGTACTGGATGATGT 59.098 50.000 7.77 0.00 42.00 3.06
270 271 0.460284 GGAGTGTGCCGTACTGGATG 60.460 60.000 7.77 0.00 42.00 3.51
279 280 3.587797 TCTAACTAAAGGAGTGTGCCG 57.412 47.619 0.00 0.00 38.87 5.69
300 301 9.260002 GTGTTTGTCATACTGGATTTCATTTTT 57.740 29.630 0.00 0.00 0.00 1.94
306 307 5.856126 TCGTGTTTGTCATACTGGATTTC 57.144 39.130 0.00 0.00 0.00 2.17
310 311 3.395639 GGTTCGTGTTTGTCATACTGGA 58.604 45.455 0.00 0.00 0.00 3.86
327 328 0.179174 AATTTCATTCCGCGCGGTTC 60.179 50.000 44.16 0.00 36.47 3.62
331 332 1.586042 CCCAATTTCATTCCGCGCG 60.586 57.895 25.67 25.67 0.00 6.86
336 337 5.599656 TGATTCTCATCCCCAATTTCATTCC 59.400 40.000 0.00 0.00 0.00 3.01
337 338 6.720112 TGATTCTCATCCCCAATTTCATTC 57.280 37.500 0.00 0.00 0.00 2.67
365 366 3.244112 CCACTGTAAGATCCGTTATCCCC 60.244 52.174 0.00 0.00 37.43 4.81
386 387 0.965866 GCTGCTAAAGTGGTTCCCCC 60.966 60.000 0.00 0.00 0.00 5.40
408 409 3.235200 CGAGGGGGAAGATAGATGAAGT 58.765 50.000 0.00 0.00 0.00 3.01
745 807 2.671963 GCCTTCACCGGTTCACCC 60.672 66.667 2.97 0.00 0.00 4.61
746 808 1.966451 CAGCCTTCACCGGTTCACC 60.966 63.158 2.97 0.00 0.00 4.02
747 809 0.321653 ATCAGCCTTCACCGGTTCAC 60.322 55.000 2.97 0.00 0.00 3.18
748 810 0.321564 CATCAGCCTTCACCGGTTCA 60.322 55.000 2.97 0.00 0.00 3.18
750 812 1.002134 CCATCAGCCTTCACCGGTT 60.002 57.895 2.97 0.00 0.00 4.44
754 816 0.615331 TGAGACCATCAGCCTTCACC 59.385 55.000 0.00 0.00 32.77 4.02
764 826 2.094417 GCAAAGTAACGCTGAGACCATC 59.906 50.000 0.00 0.00 0.00 3.51
765 827 2.076863 GCAAAGTAACGCTGAGACCAT 58.923 47.619 0.00 0.00 0.00 3.55
766 828 1.202592 TGCAAAGTAACGCTGAGACCA 60.203 47.619 0.00 0.00 0.00 4.02
767 829 1.461127 CTGCAAAGTAACGCTGAGACC 59.539 52.381 0.00 0.00 0.00 3.85
768 830 1.136224 GCTGCAAAGTAACGCTGAGAC 60.136 52.381 0.00 0.00 0.00 3.36
954 1179 0.917259 GCTGCGTCTCTCGTGTATTG 59.083 55.000 0.00 0.00 42.13 1.90
1044 1294 2.174969 GTTGTCGTCGTTGGTGGCA 61.175 57.895 0.00 0.00 0.00 4.92
1084 1334 0.908198 GAGAGCTTCTCCATGGTGGT 59.092 55.000 12.58 6.43 37.55 4.16
1122 1372 2.598394 TTGCCCTTGAGCAGCACC 60.598 61.111 0.00 0.00 45.13 5.01
1347 1604 0.251653 AGGGCTTGAGGTAGACGTCA 60.252 55.000 19.50 0.48 38.77 4.35
1435 1692 3.099905 TCTCCATGACCTTGAACTCGAT 58.900 45.455 0.00 0.00 0.00 3.59
1466 1723 0.246360 CACGATGCAGTAGTCCACCA 59.754 55.000 0.00 0.00 0.00 4.17
1590 1847 1.006998 AGCTCCCTGATCAGAGTCAGT 59.993 52.381 24.62 1.10 43.22 3.41
2143 2400 1.613255 CGTATCCTTGGCAACCACCTT 60.613 52.381 0.00 0.00 30.78 3.50
2217 2474 2.106166 GTCCATCTTCTCCCTGATGCAT 59.894 50.000 0.00 0.00 38.84 3.96
2784 3041 3.573967 AGACCGTCTTTTTGGCATTCATT 59.426 39.130 0.00 0.00 0.00 2.57
2790 3047 2.045561 TGAAGACCGTCTTTTTGGCA 57.954 45.000 14.96 5.49 36.73 4.92
2796 3053 2.893637 CCGATGATGAAGACCGTCTTT 58.106 47.619 14.96 0.08 36.73 2.52
3008 3265 1.406898 GGCAGATCTCTGTGATGTCGA 59.593 52.381 8.87 0.00 45.45 4.20
3075 3332 2.123077 CCCATCCTCCGCCTCTCT 60.123 66.667 0.00 0.00 0.00 3.10
3083 3340 0.256177 GGTGTCTTTCCCCATCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
3127 3385 2.544685 CTTTATCTCAGCCACCTCGTG 58.455 52.381 0.00 0.00 0.00 4.35
3198 3462 1.220749 GTACTTCCTGATGGCGGCA 59.779 57.895 16.34 16.34 0.00 5.69
3327 3591 5.864628 TGTATAGATCGTCTTCATCCTCG 57.135 43.478 0.00 0.00 0.00 4.63
3345 3609 6.721318 ACAATGGTTACTGGATCACTTGTAT 58.279 36.000 0.00 0.00 0.00 2.29
3422 3706 9.914131 TTATATACATGGAAAGAAGTGATCGAG 57.086 33.333 0.00 0.00 0.00 4.04
3486 7719 9.743057 CCTTCTTATCTCTGTATCAACTGTAAG 57.257 37.037 0.00 0.00 42.29 2.34
3487 7720 9.256228 ACCTTCTTATCTCTGTATCAACTGTAA 57.744 33.333 0.00 0.00 0.00 2.41
3498 7731 4.530161 AGCACAAGACCTTCTTATCTCTGT 59.470 41.667 0.00 0.00 33.78 3.41
3499 7732 5.083533 AGCACAAGACCTTCTTATCTCTG 57.916 43.478 0.00 0.00 33.78 3.35
3501 7734 5.352846 GGAAAGCACAAGACCTTCTTATCTC 59.647 44.000 0.00 0.00 33.78 2.75
3502 7735 5.249420 GGAAAGCACAAGACCTTCTTATCT 58.751 41.667 0.00 0.00 33.78 1.98
3503 7736 4.093556 CGGAAAGCACAAGACCTTCTTATC 59.906 45.833 0.00 0.00 33.78 1.75
3509 7742 1.947456 GAACGGAAAGCACAAGACCTT 59.053 47.619 0.00 0.00 0.00 3.50
3510 7743 1.134220 TGAACGGAAAGCACAAGACCT 60.134 47.619 0.00 0.00 0.00 3.85
3511 7744 1.305201 TGAACGGAAAGCACAAGACC 58.695 50.000 0.00 0.00 0.00 3.85
3512 7745 3.626028 AATGAACGGAAAGCACAAGAC 57.374 42.857 0.00 0.00 0.00 3.01
3514 7747 3.705604 ACAAATGAACGGAAAGCACAAG 58.294 40.909 0.00 0.00 0.00 3.16
3526 7760 6.152831 AGTTTTATCCCTGCCTACAAATGAAC 59.847 38.462 0.00 0.00 0.00 3.18
3548 7782 5.010820 ACGGCTTAGTCTAGTTTTCAGAGTT 59.989 40.000 0.00 0.00 0.00 3.01
3707 7949 6.360370 TGCCTTCAACTCTAGTTCTTACAT 57.640 37.500 0.00 0.00 35.83 2.29
3743 7985 2.478894 CACACGTATCAGACACAAACCC 59.521 50.000 0.00 0.00 0.00 4.11
3785 8037 9.798994 CTACGTAGTTCTTACAGGTTCAATAAT 57.201 33.333 14.66 0.00 37.78 1.28
3786 8038 9.013229 TCTACGTAGTTCTTACAGGTTCAATAA 57.987 33.333 21.53 0.00 37.78 1.40
3787 8039 8.565896 TCTACGTAGTTCTTACAGGTTCAATA 57.434 34.615 21.53 0.00 37.78 1.90
3789 8041 6.488006 ACTCTACGTAGTTCTTACAGGTTCAA 59.512 38.462 21.53 0.00 37.78 2.69
3790 8042 6.000219 ACTCTACGTAGTTCTTACAGGTTCA 59.000 40.000 21.53 0.00 37.78 3.18
3793 8045 6.000219 TCAACTCTACGTAGTTCTTACAGGT 59.000 40.000 21.53 6.22 37.78 4.00
3794 8046 6.492007 TCAACTCTACGTAGTTCTTACAGG 57.508 41.667 21.53 0.07 37.78 4.00
3795 8047 7.022384 CCTTCAACTCTACGTAGTTCTTACAG 58.978 42.308 21.53 12.22 37.78 2.74
3797 8049 5.799435 GCCTTCAACTCTACGTAGTTCTTAC 59.201 44.000 21.53 2.21 37.78 2.34
3798 8050 5.474532 TGCCTTCAACTCTACGTAGTTCTTA 59.525 40.000 21.53 1.65 37.78 2.10
3799 8051 4.280174 TGCCTTCAACTCTACGTAGTTCTT 59.720 41.667 21.53 8.97 37.78 2.52
3800 8052 3.825014 TGCCTTCAACTCTACGTAGTTCT 59.175 43.478 21.53 5.03 37.78 3.01
3801 8053 4.170292 TGCCTTCAACTCTACGTAGTTC 57.830 45.455 21.53 1.79 37.78 3.01
3802 8054 4.595762 TTGCCTTCAACTCTACGTAGTT 57.404 40.909 21.53 10.12 37.78 2.24
3803 8055 4.595762 TTTGCCTTCAACTCTACGTAGT 57.404 40.909 21.53 3.58 36.76 2.73
3805 8057 7.820386 TGAAATATTTGCCTTCAACTCTACGTA 59.180 33.333 5.17 0.00 30.75 3.57
3808 8060 7.433425 GCATGAAATATTTGCCTTCAACTCTAC 59.567 37.037 5.17 0.00 33.08 2.59
3809 8061 7.483307 GCATGAAATATTTGCCTTCAACTCTA 58.517 34.615 5.17 0.00 33.08 2.43
3810 8062 6.335777 GCATGAAATATTTGCCTTCAACTCT 58.664 36.000 5.17 0.00 33.08 3.24
3821 8073 3.441496 AGCACCGGCATGAAATATTTG 57.559 42.857 5.17 0.00 44.61 2.32
3824 8076 2.554032 GCTAAGCACCGGCATGAAATAT 59.446 45.455 0.00 0.00 44.61 1.28
3825 8077 1.946768 GCTAAGCACCGGCATGAAATA 59.053 47.619 0.00 0.00 44.61 1.40
3827 8079 0.607762 TGCTAAGCACCGGCATGAAA 60.608 50.000 0.00 0.00 44.61 2.69
3828 8080 0.607762 TTGCTAAGCACCGGCATGAA 60.608 50.000 0.00 0.00 44.61 2.57
3829 8081 1.002746 TTGCTAAGCACCGGCATGA 60.003 52.632 0.00 0.00 44.61 3.07
3830 8082 1.137404 GTTGCTAAGCACCGGCATG 59.863 57.895 0.00 0.00 44.61 4.06
3831 8083 2.046285 GGTTGCTAAGCACCGGCAT 61.046 57.895 0.00 0.00 44.61 4.40
3833 8085 2.359975 AGGTTGCTAAGCACCGGC 60.360 61.111 0.00 0.00 38.71 6.13
3836 8088 0.593128 CACACAGGTTGCTAAGCACC 59.407 55.000 0.00 0.00 38.71 5.01
3837 8089 0.593128 CCACACAGGTTGCTAAGCAC 59.407 55.000 0.00 0.00 38.71 4.40
3838 8090 1.172180 GCCACACAGGTTGCTAAGCA 61.172 55.000 0.00 0.00 40.61 3.91
3840 8092 0.250901 AGGCCACACAGGTTGCTAAG 60.251 55.000 5.01 0.00 40.61 2.18
3841 8093 1.060729 TAGGCCACACAGGTTGCTAA 58.939 50.000 5.01 0.00 40.61 3.09
3842 8094 0.323629 GTAGGCCACACAGGTTGCTA 59.676 55.000 5.01 0.00 40.61 3.49
3844 8096 1.073199 AGTAGGCCACACAGGTTGC 59.927 57.895 5.01 0.00 40.61 4.17
3845 8097 1.237285 GCAGTAGGCCACACAGGTTG 61.237 60.000 5.01 0.00 40.61 3.77
3846 8098 1.073199 GCAGTAGGCCACACAGGTT 59.927 57.895 5.01 0.00 40.61 3.50
3847 8099 2.750350 GCAGTAGGCCACACAGGT 59.250 61.111 5.01 0.00 40.61 4.00
3859 8259 2.494445 CCGAGCATCACGGCAGTA 59.506 61.111 0.00 0.00 43.74 2.74
3894 8294 2.361610 CCATTTGTCCGGCTGGCT 60.362 61.111 6.73 0.00 34.14 4.75
3962 8362 6.709846 CCCACCATGCTCTTTTCAAAAATTAA 59.290 34.615 0.00 0.00 0.00 1.40
3963 8363 6.229733 CCCACCATGCTCTTTTCAAAAATTA 58.770 36.000 0.00 0.00 0.00 1.40
3964 8364 5.065235 CCCACCATGCTCTTTTCAAAAATT 58.935 37.500 0.00 0.00 0.00 1.82
3988 8389 4.028993 TGGGTTAAGCCTTAAGTTCCAG 57.971 45.455 23.52 0.00 37.43 3.86
4019 8420 9.990360 GAAAAGGAACACCAGGAAAAATTAATA 57.010 29.630 0.00 0.00 0.00 0.98
4022 8423 7.563556 AGAGAAAAGGAACACCAGGAAAAATTA 59.436 33.333 0.00 0.00 0.00 1.40
4025 8426 5.269189 AGAGAAAAGGAACACCAGGAAAAA 58.731 37.500 0.00 0.00 0.00 1.94
4026 8427 4.867086 AGAGAAAAGGAACACCAGGAAAA 58.133 39.130 0.00 0.00 0.00 2.29
4028 8429 5.640158 TTAGAGAAAAGGAACACCAGGAA 57.360 39.130 0.00 0.00 0.00 3.36
4029 8430 5.640158 TTTAGAGAAAAGGAACACCAGGA 57.360 39.130 0.00 0.00 0.00 3.86
4090 8501 3.505293 ACAGAAGGAAAGAGCATGAAAGC 59.495 43.478 0.00 0.00 0.00 3.51
4102 8513 6.409524 AAGCATTTCAATGACAGAAGGAAA 57.590 33.333 3.60 0.00 38.70 3.13
4143 8558 6.627395 ACTACATGACACATTTTCCGAAAA 57.373 33.333 8.71 8.71 34.41 2.29
4162 8577 9.596677 CAGAGCGACTAGTTAATGTATTACTAC 57.403 37.037 0.00 0.00 0.00 2.73
4163 8578 8.288208 GCAGAGCGACTAGTTAATGTATTACTA 58.712 37.037 0.00 0.00 0.00 1.82
4164 8579 7.140048 GCAGAGCGACTAGTTAATGTATTACT 58.860 38.462 0.00 0.00 0.00 2.24
4184 8599 5.366829 TTCAGTGAATCAACATTGCAGAG 57.633 39.130 0.08 0.00 0.00 3.35
4327 10185 9.920133 TCCGAAAATATTTGTCATGAAAATGAA 57.080 25.926 18.30 0.05 31.60 2.57
4328 10186 9.352784 GTCCGAAAATATTTGTCATGAAAATGA 57.647 29.630 18.30 4.87 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.