Multiple sequence alignment - TraesCS3B01G171900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G171900 chr3B 100.000 2353 0 0 1 2353 172870076 172872428 0.000000e+00 4346.0
1 TraesCS3B01G171900 chr3B 100.000 467 0 0 2614 3080 172872689 172873155 0.000000e+00 863.0
2 TraesCS3B01G171900 chr3B 98.242 455 5 2 2624 3075 300257837 300258291 0.000000e+00 793.0
3 TraesCS3B01G171900 chr3B 94.505 91 4 1 817 907 682533272 682533361 4.140000e-29 139.0
4 TraesCS3B01G171900 chr3B 94.505 91 4 1 817 907 758963203 758963114 4.140000e-29 139.0
5 TraesCS3B01G171900 chr7B 98.807 1257 14 1 919 2175 702453724 702454979 0.000000e+00 2237.0
6 TraesCS3B01G171900 chr7B 98.747 798 5 2 1 793 502216167 502215370 0.000000e+00 1413.0
7 TraesCS3B01G171900 chr7B 98.494 797 8 1 1 793 660931578 660930782 0.000000e+00 1402.0
8 TraesCS3B01G171900 chr7B 85.870 1012 111 18 958 1946 654926854 654925852 0.000000e+00 1048.0
9 TraesCS3B01G171900 chr7B 98.889 180 2 0 2174 2353 230625789 230625968 3.830000e-84 322.0
10 TraesCS3B01G171900 chr7B 98.889 180 2 0 2174 2353 502214384 502214205 3.830000e-84 322.0
11 TraesCS3B01G171900 chr7B 98.333 180 3 0 2174 2353 660929796 660929617 1.780000e-82 316.0
12 TraesCS3B01G171900 chr7B 100.000 32 0 0 791 822 660930647 660930616 3.320000e-05 60.2
13 TraesCS3B01G171900 chr7B 94.286 35 2 0 788 822 230624936 230624970 2.000000e-03 54.7
14 TraesCS3B01G171900 chr7B 96.875 32 1 0 791 822 502215235 502215204 2.000000e-03 54.7
15 TraesCS3B01G171900 chr5A 98.599 999 13 1 1177 2175 703136634 703135637 0.000000e+00 1766.0
16 TraesCS3B01G171900 chr5A 98.889 450 4 1 2627 3075 43628973 43628524 0.000000e+00 802.0
17 TraesCS3B01G171900 chr5A 97.414 464 8 4 2614 3075 539337546 539338007 0.000000e+00 787.0
18 TraesCS3B01G171900 chr5A 95.253 316 6 1 2038 2353 11182264 11181958 2.760000e-135 492.0
19 TraesCS3B01G171900 chr4B 97.998 999 19 1 1177 2175 389845154 389846151 0.000000e+00 1733.0
20 TraesCS3B01G171900 chr4B 98.821 848 6 1 1 844 389844308 389845155 0.000000e+00 1507.0
21 TraesCS3B01G171900 chr7D 90.902 1275 81 13 932 2175 612930782 612932052 0.000000e+00 1679.0
22 TraesCS3B01G171900 chr7D 83.621 1276 119 46 957 2179 585563657 585562419 0.000000e+00 1116.0
23 TraesCS3B01G171900 chr4A 98.745 797 6 1 1 793 545019335 545018539 0.000000e+00 1413.0
24 TraesCS3B01G171900 chr4A 98.704 463 5 1 2614 3075 369633378 369633840 0.000000e+00 821.0
25 TraesCS3B01G171900 chr4A 98.881 268 3 0 1819 2086 612154128 612154395 2.150000e-131 479.0
26 TraesCS3B01G171900 chr4A 94.505 91 4 1 817 907 172840733 172840644 4.140000e-29 139.0
27 TraesCS3B01G171900 chr4A 96.875 32 1 0 791 822 172840725 172840694 2.000000e-03 54.7
28 TraesCS3B01G171900 chr3A 98.747 798 5 2 1 793 532361274 532360477 0.000000e+00 1413.0
29 TraesCS3B01G171900 chr3A 98.896 453 4 1 2624 3075 726604166 726604618 0.000000e+00 808.0
30 TraesCS3B01G171900 chr3A 98.734 316 4 0 2038 2353 722605168 722605483 2.070000e-156 562.0
31 TraesCS3B01G171900 chr3A 94.505 91 4 1 817 907 736751567 736751478 4.140000e-29 139.0
32 TraesCS3B01G171900 chr1B 98.496 798 7 2 1 793 17187628 17186831 0.000000e+00 1402.0
33 TraesCS3B01G171900 chr1B 94.505 91 4 1 817 907 17186704 17186615 4.140000e-29 139.0
34 TraesCS3B01G171900 chr1B 96.875 32 1 0 791 822 17186696 17186665 2.000000e-03 54.7
35 TraesCS3B01G171900 chr6B 98.371 798 8 2 1 793 36531298 36532095 0.000000e+00 1397.0
36 TraesCS3B01G171900 chr6B 98.333 180 3 0 2174 2353 293513217 293513396 1.780000e-82 316.0
37 TraesCS3B01G171900 chr6B 95.402 87 3 1 821 907 36532222 36532307 1.490000e-28 137.0
38 TraesCS3B01G171900 chr6B 94.286 35 2 0 788 822 36532223 36532257 2.000000e-03 54.7
39 TraesCS3B01G171900 chr1A 98.254 802 5 2 1 793 26571844 26571043 0.000000e+00 1395.0
40 TraesCS3B01G171900 chr1A 98.254 802 5 2 1 793 423370545 423371346 0.000000e+00 1395.0
41 TraesCS3B01G171900 chr1A 97.408 463 10 2 2614 3075 555145243 555145704 0.000000e+00 787.0
42 TraesCS3B01G171900 chr1A 93.407 91 5 1 817 907 26570920 26570831 1.930000e-27 134.0
43 TraesCS3B01G171900 chr7A 85.520 1250 124 31 953 2154 675596157 675594917 0.000000e+00 1253.0
44 TraesCS3B01G171900 chr7A 89.388 980 75 16 932 1893 704292933 704293901 0.000000e+00 1206.0
45 TraesCS3B01G171900 chr7A 86.090 798 88 13 953 1734 675921405 675920615 0.000000e+00 837.0
46 TraesCS3B01G171900 chr7A 98.294 469 0 1 2614 3074 93555979 93555511 0.000000e+00 815.0
47 TraesCS3B01G171900 chr7A 98.065 465 4 3 2614 3076 17250761 17251222 0.000000e+00 804.0
48 TraesCS3B01G171900 chrUn 99.117 453 3 1 2624 3075 471707743 471708195 0.000000e+00 813.0
49 TraesCS3B01G171900 chrUn 93.407 91 5 1 817 907 407816356 407816445 1.930000e-27 134.0
50 TraesCS3B01G171900 chr5B 99.051 316 3 0 2038 2353 34370995 34371310 4.460000e-158 568.0
51 TraesCS3B01G171900 chr5B 98.438 192 3 0 1819 2010 680151859 680151668 3.800000e-89 339.0
52 TraesCS3B01G171900 chr5B 94.505 91 4 1 817 907 365278291 365278380 4.140000e-29 139.0
53 TraesCS3B01G171900 chr5B 94.286 35 2 0 788 822 365278296 365278330 2.000000e-03 54.7
54 TraesCS3B01G171900 chr5B 96.875 32 1 0 791 822 691654207 691654176 2.000000e-03 54.7
55 TraesCS3B01G171900 chr2B 97.764 313 7 0 2038 2350 755117458 755117146 9.720000e-150 540.0
56 TraesCS3B01G171900 chr2B 96.711 304 10 0 2038 2341 535434061 535434364 9.850000e-140 507.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G171900 chr3B 172870076 172873155 3079 False 2604.500000 4346 100.000000 1 3080 2 chr3B.!!$F3 3079
1 TraesCS3B01G171900 chr7B 702453724 702454979 1255 False 2237.000000 2237 98.807000 919 2175 1 chr7B.!!$F1 1256
2 TraesCS3B01G171900 chr7B 654925852 654926854 1002 True 1048.000000 1048 85.870000 958 1946 1 chr7B.!!$R1 988
3 TraesCS3B01G171900 chr7B 502214205 502216167 1962 True 596.566667 1413 98.170333 1 2353 3 chr7B.!!$R2 2352
4 TraesCS3B01G171900 chr7B 660929617 660931578 1961 True 592.733333 1402 98.942333 1 2353 3 chr7B.!!$R3 2352
5 TraesCS3B01G171900 chr5A 703135637 703136634 997 True 1766.000000 1766 98.599000 1177 2175 1 chr5A.!!$R3 998
6 TraesCS3B01G171900 chr4B 389844308 389846151 1843 False 1620.000000 1733 98.409500 1 2175 2 chr4B.!!$F1 2174
7 TraesCS3B01G171900 chr7D 612930782 612932052 1270 False 1679.000000 1679 90.902000 932 2175 1 chr7D.!!$F1 1243
8 TraesCS3B01G171900 chr7D 585562419 585563657 1238 True 1116.000000 1116 83.621000 957 2179 1 chr7D.!!$R1 1222
9 TraesCS3B01G171900 chr4A 545018539 545019335 796 True 1413.000000 1413 98.745000 1 793 1 chr4A.!!$R1 792
10 TraesCS3B01G171900 chr3A 532360477 532361274 797 True 1413.000000 1413 98.747000 1 793 1 chr3A.!!$R1 792
11 TraesCS3B01G171900 chr1B 17186615 17187628 1013 True 531.900000 1402 96.625333 1 907 3 chr1B.!!$R1 906
12 TraesCS3B01G171900 chr6B 36531298 36532307 1009 False 529.566667 1397 96.019667 1 907 3 chr6B.!!$F2 906
13 TraesCS3B01G171900 chr1A 423370545 423371346 801 False 1395.000000 1395 98.254000 1 793 1 chr1A.!!$F1 792
14 TraesCS3B01G171900 chr1A 26570831 26571844 1013 True 764.500000 1395 95.830500 1 907 2 chr1A.!!$R1 906
15 TraesCS3B01G171900 chr7A 675594917 675596157 1240 True 1253.000000 1253 85.520000 953 2154 1 chr7A.!!$R2 1201
16 TraesCS3B01G171900 chr7A 704292933 704293901 968 False 1206.000000 1206 89.388000 932 1893 1 chr7A.!!$F2 961
17 TraesCS3B01G171900 chr7A 675920615 675921405 790 True 837.000000 837 86.090000 953 1734 1 chr7A.!!$R3 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
910 1027 1.198408 CTGCAACGTTCATCAGCACAT 59.802 47.619 6.18 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2774 3718 0.033991 CAGTTCCCTCTCCCTCTCGA 60.034 60.0 0.0 0.0 0.0 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
804 818 8.491134 AGCATACCCAATTACTGTAGTATTTCA 58.509 33.333 0.00 0.00 0.00 2.69
805 819 9.116067 GCATACCCAATTACTGTAGTATTTCAA 57.884 33.333 0.00 0.00 0.00 2.69
809 823 9.357161 ACCCAATTACTGTAGTATTTCAAAACA 57.643 29.630 0.00 0.00 0.00 2.83
896 1013 7.520119 ACTACAGTTTTTAAAAAGCTGCAAC 57.480 32.000 26.09 12.79 33.92 4.17
897 1014 5.448926 ACAGTTTTTAAAAAGCTGCAACG 57.551 34.783 26.09 13.83 33.92 4.10
901 1018 5.635700 AGTTTTTAAAAAGCTGCAACGTTCA 59.364 32.000 13.58 0.00 0.00 3.18
902 1019 6.312672 AGTTTTTAAAAAGCTGCAACGTTCAT 59.687 30.769 13.58 0.00 0.00 2.57
903 1020 5.881637 TTTAAAAAGCTGCAACGTTCATC 57.118 34.783 0.00 0.00 0.00 2.92
904 1021 3.435105 AAAAAGCTGCAACGTTCATCA 57.565 38.095 0.00 0.00 0.00 3.07
905 1022 2.693797 AAAGCTGCAACGTTCATCAG 57.306 45.000 14.13 14.13 0.00 2.90
906 1023 4.447365 GCTGCAACGTTCATCAGC 57.553 55.556 22.58 22.58 43.95 4.26
908 1025 3.373020 CTGCAACGTTCATCAGCAC 57.627 52.632 6.18 0.00 0.00 4.40
910 1027 1.198408 CTGCAACGTTCATCAGCACAT 59.802 47.619 6.18 0.00 0.00 3.21
911 1028 1.608109 TGCAACGTTCATCAGCACATT 59.392 42.857 6.18 0.00 0.00 2.71
912 1029 2.245096 GCAACGTTCATCAGCACATTC 58.755 47.619 0.00 0.00 0.00 2.67
913 1030 2.095567 GCAACGTTCATCAGCACATTCT 60.096 45.455 0.00 0.00 0.00 2.40
914 1031 3.485633 CAACGTTCATCAGCACATTCTG 58.514 45.455 0.00 0.00 35.46 3.02
1002 1162 8.755696 TTGCAAGTTAAACTTAAAGCCATATG 57.244 30.769 0.00 0.00 36.03 1.78
1032 1192 5.016173 TGATGCCTTTTGCTAATACCAGTT 58.984 37.500 0.00 0.00 42.00 3.16
1521 1702 8.401490 AGTTGATGAAGCAATAACTTTCTTCT 57.599 30.769 0.00 0.00 36.72 2.85
1694 1875 2.306847 GAAAAAGTTCCTGTGCCTGGA 58.693 47.619 0.00 0.00 0.00 3.86
1709 1890 3.274823 TGGAGAACCAGGGTTTCCT 57.725 52.632 15.25 11.16 46.26 3.36
1866 2059 9.908152 AAGTAATAAGTTGTTTGCTTGGTATTC 57.092 29.630 0.00 0.00 0.00 1.75
2293 3237 4.388499 GGCGACGGTGGTGTGGAT 62.388 66.667 0.00 0.00 0.00 3.41
2652 3596 2.123640 GTCGGGAGAGGAGAGGGG 60.124 72.222 0.00 0.00 41.26 4.79
2653 3597 2.286962 TCGGGAGAGGAGAGGGGA 60.287 66.667 0.00 0.00 0.00 4.81
2654 3598 1.934341 TCGGGAGAGGAGAGGGGAA 60.934 63.158 0.00 0.00 0.00 3.97
2655 3599 1.456705 CGGGAGAGGAGAGGGGAAG 60.457 68.421 0.00 0.00 0.00 3.46
2656 3600 1.074850 GGGAGAGGAGAGGGGAAGG 60.075 68.421 0.00 0.00 0.00 3.46
2657 3601 1.074850 GGAGAGGAGAGGGGAAGGG 60.075 68.421 0.00 0.00 0.00 3.95
2658 3602 1.074850 GAGAGGAGAGGGGAAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
2659 3603 1.550374 AGAGGAGAGGGGAAGGGGA 60.550 63.158 0.00 0.00 0.00 4.81
2660 3604 0.938926 AGAGGAGAGGGGAAGGGGAT 60.939 60.000 0.00 0.00 0.00 3.85
2661 3605 0.472925 GAGGAGAGGGGAAGGGGATC 60.473 65.000 0.00 0.00 0.00 3.36
2662 3606 0.938926 AGGAGAGGGGAAGGGGATCT 60.939 60.000 0.00 0.00 0.00 2.75
2663 3607 0.868186 GGAGAGGGGAAGGGGATCTA 59.132 60.000 0.00 0.00 0.00 1.98
2664 3608 1.203250 GGAGAGGGGAAGGGGATCTAG 60.203 61.905 0.00 0.00 0.00 2.43
2665 3609 0.871024 AGAGGGGAAGGGGATCTAGG 59.129 60.000 0.00 0.00 0.00 3.02
2666 3610 0.178888 GAGGGGAAGGGGATCTAGGG 60.179 65.000 0.00 0.00 0.00 3.53
2667 3611 1.848431 GGGGAAGGGGATCTAGGGC 60.848 68.421 0.00 0.00 0.00 5.19
2668 3612 2.217745 GGGAAGGGGATCTAGGGCG 61.218 68.421 0.00 0.00 0.00 6.13
2669 3613 1.152312 GGAAGGGGATCTAGGGCGA 60.152 63.158 0.00 0.00 0.00 5.54
2670 3614 1.188871 GGAAGGGGATCTAGGGCGAG 61.189 65.000 0.00 0.00 0.00 5.03
2671 3615 1.152226 AAGGGGATCTAGGGCGAGG 60.152 63.158 0.00 0.00 0.00 4.63
2672 3616 2.604991 GGGGATCTAGGGCGAGGG 60.605 72.222 0.00 0.00 0.00 4.30
2673 3617 2.526628 GGGATCTAGGGCGAGGGA 59.473 66.667 0.00 0.00 0.00 4.20
2674 3618 1.608046 GGGATCTAGGGCGAGGGAG 60.608 68.421 0.00 0.00 0.00 4.30
2675 3619 1.461144 GGATCTAGGGCGAGGGAGA 59.539 63.158 0.00 0.00 0.00 3.71
2676 3620 0.610785 GGATCTAGGGCGAGGGAGAG 60.611 65.000 0.00 0.00 0.00 3.20
2677 3621 0.610785 GATCTAGGGCGAGGGAGAGG 60.611 65.000 0.00 0.00 0.00 3.69
2678 3622 2.087857 ATCTAGGGCGAGGGAGAGGG 62.088 65.000 0.00 0.00 0.00 4.30
2679 3623 4.541648 TAGGGCGAGGGAGAGGGC 62.542 72.222 0.00 0.00 0.00 5.19
2685 3629 4.144727 GAGGGAGAGGGCGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
2686 3630 4.150454 AGGGAGAGGGCGAGGGAG 62.150 72.222 0.00 0.00 0.00 4.30
2687 3631 4.144727 GGGAGAGGGCGAGGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
2688 3632 2.520741 GGAGAGGGCGAGGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
2689 3633 2.520741 GAGAGGGCGAGGGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
2690 3634 4.150454 AGAGGGCGAGGGAGAGGG 62.150 72.222 0.00 0.00 0.00 4.30
2691 3635 4.144727 GAGGGCGAGGGAGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
2692 3636 3.680920 GAGGGCGAGGGAGAGGGAA 62.681 68.421 0.00 0.00 0.00 3.97
2693 3637 3.157949 GGGCGAGGGAGAGGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
2694 3638 3.157949 GGCGAGGGAGAGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
2695 3639 3.855853 GCGAGGGAGAGGGAAGGC 61.856 72.222 0.00 0.00 0.00 4.35
2696 3640 3.532155 CGAGGGAGAGGGAAGGCG 61.532 72.222 0.00 0.00 0.00 5.52
2697 3641 2.042843 GAGGGAGAGGGAAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
2698 3642 2.042435 AGGGAGAGGGAAGGCGAG 60.042 66.667 0.00 0.00 0.00 5.03
2699 3643 3.157949 GGGAGAGGGAAGGCGAGG 61.158 72.222 0.00 0.00 0.00 4.63
2700 3644 2.042843 GGAGAGGGAAGGCGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
2701 3645 2.131067 GGAGAGGGAAGGCGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
2702 3646 1.076632 GAGAGGGAAGGCGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
2703 3647 1.076339 AGAGGGAAGGCGAGGAGAG 60.076 63.158 0.00 0.00 0.00 3.20
2704 3648 2.042435 AGGGAAGGCGAGGAGAGG 60.042 66.667 0.00 0.00 0.00 3.69
2705 3649 3.157949 GGGAAGGCGAGGAGAGGG 61.158 72.222 0.00 0.00 0.00 4.30
2706 3650 3.855853 GGAAGGCGAGGAGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
2707 3651 4.214327 GAAGGCGAGGAGAGGGCG 62.214 72.222 0.00 0.00 0.00 6.13
2708 3652 4.761058 AAGGCGAGGAGAGGGCGA 62.761 66.667 0.00 0.00 0.00 5.54
2712 3656 4.507916 CGAGGAGAGGGCGAGGGA 62.508 72.222 0.00 0.00 0.00 4.20
2713 3657 2.520741 GAGGAGAGGGCGAGGGAG 60.521 72.222 0.00 0.00 0.00 4.30
2714 3658 4.150454 AGGAGAGGGCGAGGGAGG 62.150 72.222 0.00 0.00 0.00 4.30
2716 3660 4.144727 GAGAGGGCGAGGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
2717 3661 4.150454 AGAGGGCGAGGGAGGGAG 62.150 72.222 0.00 0.00 0.00 4.30
2718 3662 4.144727 GAGGGCGAGGGAGGGAGA 62.145 72.222 0.00 0.00 0.00 3.71
2719 3663 4.150454 AGGGCGAGGGAGGGAGAG 62.150 72.222 0.00 0.00 0.00 3.20
2724 3668 4.144727 GAGGGAGGGAGAGGGCGA 62.145 72.222 0.00 0.00 0.00 5.54
2725 3669 4.150454 AGGGAGGGAGAGGGCGAG 62.150 72.222 0.00 0.00 0.00 5.03
2780 3724 4.933064 GCGGCGGTGGATCGAGAG 62.933 72.222 9.78 0.00 0.00 3.20
2781 3725 4.271816 CGGCGGTGGATCGAGAGG 62.272 72.222 0.00 0.00 0.00 3.69
2782 3726 3.917760 GGCGGTGGATCGAGAGGG 61.918 72.222 0.00 0.00 0.00 4.30
2783 3727 2.833582 GCGGTGGATCGAGAGGGA 60.834 66.667 0.00 0.00 0.00 4.20
2784 3728 2.851071 GCGGTGGATCGAGAGGGAG 61.851 68.421 0.00 0.00 0.00 4.30
2785 3729 1.152943 CGGTGGATCGAGAGGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
2786 3730 1.169661 CGGTGGATCGAGAGGGAGAG 61.170 65.000 0.00 0.00 0.00 3.20
2787 3731 0.825840 GGTGGATCGAGAGGGAGAGG 60.826 65.000 0.00 0.00 0.00 3.69
2788 3732 0.825840 GTGGATCGAGAGGGAGAGGG 60.826 65.000 0.00 0.00 0.00 4.30
2789 3733 0.994050 TGGATCGAGAGGGAGAGGGA 60.994 60.000 0.00 0.00 0.00 4.20
2790 3734 0.186386 GGATCGAGAGGGAGAGGGAA 59.814 60.000 0.00 0.00 0.00 3.97
2791 3735 1.324383 GATCGAGAGGGAGAGGGAAC 58.676 60.000 0.00 0.00 0.00 3.62
2793 3737 0.033991 TCGAGAGGGAGAGGGAACTG 60.034 60.000 0.00 0.00 44.43 3.16
2794 3738 1.040339 CGAGAGGGAGAGGGAACTGG 61.040 65.000 0.00 0.00 44.43 4.00
2795 3739 1.306568 AGAGGGAGAGGGAACTGGC 60.307 63.158 0.00 0.00 44.43 4.85
2796 3740 2.685380 AGGGAGAGGGAACTGGCG 60.685 66.667 0.00 0.00 44.43 5.69
2797 3741 2.683933 GGGAGAGGGAACTGGCGA 60.684 66.667 0.00 0.00 44.43 5.54
2798 3742 2.726351 GGGAGAGGGAACTGGCGAG 61.726 68.421 0.00 0.00 44.43 5.03
2799 3743 2.726351 GGAGAGGGAACTGGCGAGG 61.726 68.421 0.00 0.00 44.43 4.63
2800 3744 2.685380 AGAGGGAACTGGCGAGGG 60.685 66.667 0.00 0.00 44.43 4.30
2801 3745 3.787001 GAGGGAACTGGCGAGGGG 61.787 72.222 0.00 0.00 44.43 4.79
2804 3748 3.787001 GGAACTGGCGAGGGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
2805 3749 2.683933 GAACTGGCGAGGGGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
2806 3750 2.685380 AACTGGCGAGGGGGAGAG 60.685 66.667 0.00 0.00 0.00 3.20
2807 3751 4.787280 ACTGGCGAGGGGGAGAGG 62.787 72.222 0.00 0.00 0.00 3.69
2810 3754 4.798682 GGCGAGGGGGAGAGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
2811 3755 2.687566 GCGAGGGGGAGAGGGAAA 60.688 66.667 0.00 0.00 0.00 3.13
2812 3756 2.736826 GCGAGGGGGAGAGGGAAAG 61.737 68.421 0.00 0.00 0.00 2.62
2813 3757 2.066999 CGAGGGGGAGAGGGAAAGG 61.067 68.421 0.00 0.00 0.00 3.11
2814 3758 1.694525 GAGGGGGAGAGGGAAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
2815 3759 2.696504 GGGGGAGAGGGAAAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
2816 3760 2.696504 GGGGAGAGGGAAAGGGGG 60.697 72.222 0.00 0.00 0.00 5.40
2834 3778 3.930012 GATCGGGCGAAGGGGGAG 61.930 72.222 0.00 0.00 0.00 4.30
2835 3779 4.475444 ATCGGGCGAAGGGGGAGA 62.475 66.667 0.00 0.00 0.00 3.71
2839 3783 4.798682 GGCGAAGGGGGAGAGGGA 62.799 72.222 0.00 0.00 0.00 4.20
2840 3784 2.687566 GCGAAGGGGGAGAGGGAA 60.688 66.667 0.00 0.00 0.00 3.97
2841 3785 2.736826 GCGAAGGGGGAGAGGGAAG 61.737 68.421 0.00 0.00 0.00 3.46
2842 3786 2.066999 CGAAGGGGGAGAGGGAAGG 61.067 68.421 0.00 0.00 0.00 3.46
2843 3787 1.694525 GAAGGGGGAGAGGGAAGGG 60.695 68.421 0.00 0.00 0.00 3.95
2844 3788 3.289454 AAGGGGGAGAGGGAAGGGG 62.289 68.421 0.00 0.00 0.00 4.79
2845 3789 4.845307 GGGGGAGAGGGAAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
2846 3790 3.707189 GGGGAGAGGGAAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
2847 3791 2.712746 GGGAGAGGGAAGGGGGAT 59.287 66.667 0.00 0.00 0.00 3.85
2848 3792 1.462432 GGGAGAGGGAAGGGGGATC 60.462 68.421 0.00 0.00 0.00 3.36
2849 3793 1.839296 GGAGAGGGAAGGGGGATCG 60.839 68.421 0.00 0.00 0.00 3.69
2850 3794 1.839296 GAGAGGGAAGGGGGATCGG 60.839 68.421 0.00 0.00 0.00 4.18
2851 3795 2.849646 GAGGGAAGGGGGATCGGG 60.850 72.222 0.00 0.00 0.00 5.14
2854 3798 4.191015 GGAAGGGGGATCGGGCAC 62.191 72.222 0.00 0.00 0.00 5.01
2855 3799 3.407967 GAAGGGGGATCGGGCACA 61.408 66.667 0.00 0.00 0.00 4.57
2856 3800 2.938798 AAGGGGGATCGGGCACAA 60.939 61.111 0.00 0.00 0.00 3.33
2857 3801 2.284515 GAAGGGGGATCGGGCACAAT 62.285 60.000 0.00 0.00 0.00 2.71
2858 3802 0.991355 AAGGGGGATCGGGCACAATA 60.991 55.000 0.00 0.00 0.00 1.90
2859 3803 1.228154 GGGGGATCGGGCACAATAC 60.228 63.158 0.00 0.00 0.00 1.89
2860 3804 1.705997 GGGGGATCGGGCACAATACT 61.706 60.000 0.00 0.00 0.00 2.12
2861 3805 1.053424 GGGGATCGGGCACAATACTA 58.947 55.000 0.00 0.00 0.00 1.82
2862 3806 1.418637 GGGGATCGGGCACAATACTAA 59.581 52.381 0.00 0.00 0.00 2.24
2863 3807 2.039879 GGGGATCGGGCACAATACTAAT 59.960 50.000 0.00 0.00 0.00 1.73
2864 3808 3.074412 GGGATCGGGCACAATACTAATG 58.926 50.000 0.00 0.00 0.00 1.90
2865 3809 3.074412 GGATCGGGCACAATACTAATGG 58.926 50.000 0.00 0.00 0.00 3.16
2866 3810 1.961793 TCGGGCACAATACTAATGGC 58.038 50.000 0.00 0.00 38.14 4.40
2867 3811 0.586319 CGGGCACAATACTAATGGCG 59.414 55.000 0.00 0.00 39.68 5.69
2868 3812 0.310854 GGGCACAATACTAATGGCGC 59.689 55.000 0.00 0.00 39.68 6.53
2869 3813 1.021202 GGCACAATACTAATGGCGCA 58.979 50.000 10.83 0.00 0.00 6.09
2870 3814 1.268539 GGCACAATACTAATGGCGCAC 60.269 52.381 10.83 0.00 0.00 5.34
2871 3815 1.268539 GCACAATACTAATGGCGCACC 60.269 52.381 10.83 0.00 0.00 5.01
2872 3816 2.288666 CACAATACTAATGGCGCACCT 58.711 47.619 10.83 0.00 36.63 4.00
2873 3817 2.287915 CACAATACTAATGGCGCACCTC 59.712 50.000 10.83 0.00 36.63 3.85
2874 3818 2.093181 ACAATACTAATGGCGCACCTCA 60.093 45.455 10.83 0.00 36.63 3.86
2875 3819 2.240493 ATACTAATGGCGCACCTCAC 57.760 50.000 10.83 0.00 36.63 3.51
2876 3820 0.177141 TACTAATGGCGCACCTCACC 59.823 55.000 10.83 0.00 36.63 4.02
2877 3821 2.125310 TAATGGCGCACCTCACCG 60.125 61.111 10.83 0.00 36.63 4.94
2878 3822 2.852495 CTAATGGCGCACCTCACCGT 62.852 60.000 10.83 0.00 36.63 4.83
2895 3839 3.512035 TGGTGCGCCATTAGCATG 58.488 55.556 16.89 0.00 46.96 4.06
2896 3840 1.378382 TGGTGCGCCATTAGCATGT 60.378 52.632 16.89 0.00 46.96 3.21
2897 3841 1.356624 GGTGCGCCATTAGCATGTC 59.643 57.895 12.58 0.00 46.96 3.06
2898 3842 1.356624 GTGCGCCATTAGCATGTCC 59.643 57.895 4.18 0.00 46.96 4.02
2899 3843 1.077858 TGCGCCATTAGCATGTCCA 60.078 52.632 4.18 0.00 44.04 4.02
2900 3844 0.466007 TGCGCCATTAGCATGTCCAT 60.466 50.000 4.18 0.00 44.04 3.41
2901 3845 1.202746 TGCGCCATTAGCATGTCCATA 60.203 47.619 4.18 0.00 44.04 2.74
2902 3846 1.197721 GCGCCATTAGCATGTCCATAC 59.802 52.381 0.00 0.00 44.04 2.39
2903 3847 2.771089 CGCCATTAGCATGTCCATACT 58.229 47.619 0.00 0.00 44.04 2.12
2904 3848 3.864540 GCGCCATTAGCATGTCCATACTA 60.865 47.826 0.00 0.00 44.04 1.82
2905 3849 4.314961 CGCCATTAGCATGTCCATACTAA 58.685 43.478 3.16 3.16 44.04 2.24
2906 3850 4.937620 CGCCATTAGCATGTCCATACTAAT 59.062 41.667 6.86 6.86 44.04 1.73
2907 3851 5.163824 CGCCATTAGCATGTCCATACTAATG 60.164 44.000 22.40 22.40 45.73 1.90
2915 3859 3.706055 CCATACTAATGGCGCACCT 57.294 52.632 10.83 0.00 46.17 4.00
2916 3860 1.512926 CCATACTAATGGCGCACCTC 58.487 55.000 10.83 0.00 46.17 3.85
2917 3861 1.202639 CCATACTAATGGCGCACCTCA 60.203 52.381 10.83 0.00 46.17 3.86
2918 3862 1.867233 CATACTAATGGCGCACCTCAC 59.133 52.381 10.83 0.00 36.63 3.51
2919 3863 0.177141 TACTAATGGCGCACCTCACC 59.823 55.000 10.83 0.00 36.63 4.02
2920 3864 2.125310 TAATGGCGCACCTCACCG 60.125 61.111 10.83 0.00 36.63 4.94
2921 3865 2.852495 CTAATGGCGCACCTCACCGT 62.852 60.000 10.83 0.00 36.63 4.83
2963 3907 5.759506 TTTTATTTCAACTCGAGCCAACA 57.240 34.783 13.61 0.00 0.00 3.33
2964 3908 5.356882 TTTATTTCAACTCGAGCCAACAG 57.643 39.130 13.61 0.00 0.00 3.16
2965 3909 1.593196 TTTCAACTCGAGCCAACAGG 58.407 50.000 13.61 0.00 0.00 4.00
2966 3910 0.468226 TTCAACTCGAGCCAACAGGT 59.532 50.000 13.61 0.00 0.00 4.00
2967 3911 0.468226 TCAACTCGAGCCAACAGGTT 59.532 50.000 13.61 0.00 0.00 3.50
2968 3912 1.689813 TCAACTCGAGCCAACAGGTTA 59.310 47.619 13.61 0.00 0.00 2.85
2969 3913 2.301870 TCAACTCGAGCCAACAGGTTAT 59.698 45.455 13.61 0.00 0.00 1.89
2970 3914 2.386661 ACTCGAGCCAACAGGTTATG 57.613 50.000 13.61 0.00 0.00 1.90
2971 3915 1.623811 ACTCGAGCCAACAGGTTATGT 59.376 47.619 13.61 0.00 46.97 2.29
2972 3916 2.829720 ACTCGAGCCAACAGGTTATGTA 59.170 45.455 13.61 0.00 43.00 2.29
2973 3917 3.187700 CTCGAGCCAACAGGTTATGTAC 58.812 50.000 0.00 0.00 43.00 2.90
2985 3929 4.546829 GGTTATGTACCACCAGAACTGA 57.453 45.455 3.19 0.00 46.92 3.41
2986 3930 5.099042 GGTTATGTACCACCAGAACTGAT 57.901 43.478 3.19 0.00 46.92 2.90
2987 3931 5.116882 GGTTATGTACCACCAGAACTGATC 58.883 45.833 3.19 0.00 46.92 2.92
2988 3932 3.914426 ATGTACCACCAGAACTGATCC 57.086 47.619 3.19 0.00 0.00 3.36
2989 3933 2.615391 TGTACCACCAGAACTGATCCA 58.385 47.619 3.19 0.00 0.00 3.41
2990 3934 2.301870 TGTACCACCAGAACTGATCCAC 59.698 50.000 3.19 0.00 0.00 4.02
2991 3935 1.434188 ACCACCAGAACTGATCCACA 58.566 50.000 3.19 0.00 0.00 4.17
2992 3936 1.988107 ACCACCAGAACTGATCCACAT 59.012 47.619 3.19 0.00 0.00 3.21
2993 3937 2.026822 ACCACCAGAACTGATCCACATC 60.027 50.000 3.19 0.00 0.00 3.06
2994 3938 2.026915 CCACCAGAACTGATCCACATCA 60.027 50.000 3.19 0.00 36.62 3.07
2995 3939 3.559811 CCACCAGAACTGATCCACATCAA 60.560 47.826 3.19 0.00 38.63 2.57
2996 3940 3.688185 CACCAGAACTGATCCACATCAAG 59.312 47.826 3.19 0.00 38.63 3.02
2997 3941 3.328931 ACCAGAACTGATCCACATCAAGT 59.671 43.478 3.19 0.00 38.63 3.16
2998 3942 3.937706 CCAGAACTGATCCACATCAAGTC 59.062 47.826 3.19 0.00 38.63 3.01
2999 3943 3.937706 CAGAACTGATCCACATCAAGTCC 59.062 47.826 0.00 0.00 38.63 3.85
3000 3944 3.054802 AGAACTGATCCACATCAAGTCCC 60.055 47.826 0.00 0.00 38.63 4.46
3001 3945 1.561542 ACTGATCCACATCAAGTCCCC 59.438 52.381 0.00 0.00 38.63 4.81
3002 3946 1.842562 CTGATCCACATCAAGTCCCCT 59.157 52.381 0.00 0.00 38.63 4.79
3003 3947 1.839994 TGATCCACATCAAGTCCCCTC 59.160 52.381 0.00 0.00 35.99 4.30
3004 3948 2.122768 GATCCACATCAAGTCCCCTCT 58.877 52.381 0.00 0.00 0.00 3.69
3005 3949 2.940514 TCCACATCAAGTCCCCTCTA 57.059 50.000 0.00 0.00 0.00 2.43
3006 3950 2.467880 TCCACATCAAGTCCCCTCTAC 58.532 52.381 0.00 0.00 0.00 2.59
3007 3951 2.044492 TCCACATCAAGTCCCCTCTACT 59.956 50.000 0.00 0.00 0.00 2.57
3008 3952 3.271225 TCCACATCAAGTCCCCTCTACTA 59.729 47.826 0.00 0.00 0.00 1.82
3009 3953 3.639094 CCACATCAAGTCCCCTCTACTAG 59.361 52.174 0.00 0.00 0.00 2.57
3010 3954 3.068873 CACATCAAGTCCCCTCTACTAGC 59.931 52.174 0.00 0.00 0.00 3.42
3011 3955 3.052490 ACATCAAGTCCCCTCTACTAGCT 60.052 47.826 0.00 0.00 0.00 3.32
3012 3956 3.300239 TCAAGTCCCCTCTACTAGCTC 57.700 52.381 0.00 0.00 0.00 4.09
3013 3957 1.950909 CAAGTCCCCTCTACTAGCTCG 59.049 57.143 0.00 0.00 0.00 5.03
3014 3958 1.509373 AGTCCCCTCTACTAGCTCGA 58.491 55.000 0.00 0.00 0.00 4.04
3015 3959 1.141455 AGTCCCCTCTACTAGCTCGAC 59.859 57.143 0.00 0.00 0.00 4.20
3016 3960 1.141455 GTCCCCTCTACTAGCTCGACT 59.859 57.143 0.00 0.00 0.00 4.18
3017 3961 1.141254 TCCCCTCTACTAGCTCGACTG 59.859 57.143 0.00 0.00 0.00 3.51
3018 3962 1.600023 CCCTCTACTAGCTCGACTGG 58.400 60.000 0.00 0.00 0.00 4.00
3019 3963 1.134037 CCCTCTACTAGCTCGACTGGT 60.134 57.143 0.00 8.54 43.49 4.00
3020 3964 2.215196 CCTCTACTAGCTCGACTGGTC 58.785 57.143 7.16 0.00 39.71 4.02
3021 3965 2.420269 CCTCTACTAGCTCGACTGGTCA 60.420 54.545 7.16 0.00 39.71 4.02
3022 3966 2.869801 CTCTACTAGCTCGACTGGTCAG 59.130 54.545 7.16 0.00 39.71 3.51
3023 3967 1.332375 CTACTAGCTCGACTGGTCAGC 59.668 57.143 13.29 13.29 39.71 4.26
3024 3968 0.609406 ACTAGCTCGACTGGTCAGCA 60.609 55.000 19.12 9.95 34.47 4.41
3025 3969 0.100325 CTAGCTCGACTGGTCAGCAG 59.900 60.000 19.12 1.16 36.72 4.24
3026 3970 1.938657 TAGCTCGACTGGTCAGCAGC 61.939 60.000 3.01 13.91 36.72 5.25
3027 3971 2.125753 CTCGACTGGTCAGCAGCC 60.126 66.667 3.01 0.00 0.00 4.85
3028 3972 2.917227 TCGACTGGTCAGCAGCCA 60.917 61.111 3.01 0.00 34.42 4.75
3032 3976 3.978272 CTGGTCAGCAGCCAGTTC 58.022 61.111 11.57 0.00 46.22 3.01
3033 3977 1.374190 CTGGTCAGCAGCCAGTTCT 59.626 57.895 11.57 0.00 46.22 3.01
3034 3978 0.673022 CTGGTCAGCAGCCAGTTCTC 60.673 60.000 11.57 0.00 46.22 2.87
3035 3979 1.372683 GGTCAGCAGCCAGTTCTCA 59.627 57.895 0.00 0.00 0.00 3.27
3036 3980 0.952984 GGTCAGCAGCCAGTTCTCAC 60.953 60.000 0.00 0.00 0.00 3.51
3037 3981 0.250038 GTCAGCAGCCAGTTCTCACA 60.250 55.000 0.00 0.00 0.00 3.58
3038 3982 0.250038 TCAGCAGCCAGTTCTCACAC 60.250 55.000 0.00 0.00 0.00 3.82
3039 3983 1.072159 AGCAGCCAGTTCTCACACC 59.928 57.895 0.00 0.00 0.00 4.16
3040 3984 1.227943 GCAGCCAGTTCTCACACCA 60.228 57.895 0.00 0.00 0.00 4.17
3041 3985 1.233285 GCAGCCAGTTCTCACACCAG 61.233 60.000 0.00 0.00 0.00 4.00
3042 3986 0.604780 CAGCCAGTTCTCACACCAGG 60.605 60.000 0.00 0.00 0.00 4.45
3043 3987 0.764369 AGCCAGTTCTCACACCAGGA 60.764 55.000 0.00 0.00 0.00 3.86
3044 3988 0.321122 GCCAGTTCTCACACCAGGAG 60.321 60.000 0.00 0.00 0.00 3.69
3045 3989 0.322975 CCAGTTCTCACACCAGGAGG 59.677 60.000 0.00 0.00 42.21 4.30
3057 4001 2.859422 AGGAGGTCCTGGGTTCGA 59.141 61.111 0.00 0.00 46.55 3.71
3058 4002 1.609794 AGGAGGTCCTGGGTTCGAC 60.610 63.158 0.00 0.00 46.55 4.20
3059 4003 1.609794 GGAGGTCCTGGGTTCGACT 60.610 63.158 0.00 0.00 0.00 4.18
3060 4004 1.605971 GGAGGTCCTGGGTTCGACTC 61.606 65.000 0.00 0.00 0.00 3.36
3061 4005 1.605971 GAGGTCCTGGGTTCGACTCC 61.606 65.000 0.00 0.00 0.00 3.85
3062 4006 2.657066 GGTCCTGGGTTCGACTCCC 61.657 68.421 15.66 15.66 44.81 4.30
3067 4011 3.003763 GGGTTCGACTCCCAGGCT 61.004 66.667 17.12 0.00 44.05 4.58
3068 4012 2.579738 GGTTCGACTCCCAGGCTC 59.420 66.667 0.00 0.00 0.00 4.70
3069 4013 2.579738 GTTCGACTCCCAGGCTCC 59.420 66.667 0.00 0.00 0.00 4.70
3070 4014 2.119611 TTCGACTCCCAGGCTCCA 59.880 61.111 0.00 0.00 0.00 3.86
3071 4015 2.283529 TTCGACTCCCAGGCTCCAC 61.284 63.158 0.00 0.00 0.00 4.02
3072 4016 2.997315 CGACTCCCAGGCTCCACA 60.997 66.667 0.00 0.00 0.00 4.17
3073 4017 2.583441 CGACTCCCAGGCTCCACAA 61.583 63.158 0.00 0.00 0.00 3.33
3074 4018 1.761174 GACTCCCAGGCTCCACAAA 59.239 57.895 0.00 0.00 0.00 2.83
3075 4019 0.110486 GACTCCCAGGCTCCACAAAA 59.890 55.000 0.00 0.00 0.00 2.44
3076 4020 0.555769 ACTCCCAGGCTCCACAAAAA 59.444 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
386 390 9.449719 AAAGAAGTCAATGTACCTACCTATTTG 57.550 33.333 0.00 0.00 0.00 2.32
480 484 6.418057 TTTTTGCCATATCCTTTTCACACT 57.582 33.333 0.00 0.00 0.00 3.55
802 816 9.179552 CAGTGTTTTGAAATATCGATGTTTTGA 57.820 29.630 19.41 9.83 0.00 2.69
805 819 9.825972 CTACAGTGTTTTGAAATATCGATGTTT 57.174 29.630 18.63 18.63 0.00 2.83
807 821 8.547967 ACTACAGTGTTTTGAAATATCGATGT 57.452 30.769 8.54 0.00 0.00 3.06
906 1023 0.892358 AGCTGGTGTGGCAGAATGTG 60.892 55.000 0.00 0.00 39.31 3.21
907 1024 0.692476 TAGCTGGTGTGGCAGAATGT 59.308 50.000 0.00 0.00 39.31 2.71
908 1025 1.089920 GTAGCTGGTGTGGCAGAATG 58.910 55.000 0.00 0.00 40.87 2.67
910 1027 0.035317 CTGTAGCTGGTGTGGCAGAA 59.965 55.000 0.00 0.00 0.00 3.02
911 1028 1.121407 ACTGTAGCTGGTGTGGCAGA 61.121 55.000 0.00 0.00 0.00 4.26
912 1029 0.250467 AACTGTAGCTGGTGTGGCAG 60.250 55.000 0.00 0.00 0.00 4.85
913 1030 0.534877 CAACTGTAGCTGGTGTGGCA 60.535 55.000 0.00 0.00 0.00 4.92
914 1031 0.535102 ACAACTGTAGCTGGTGTGGC 60.535 55.000 0.00 0.00 32.25 5.01
915 1032 1.967319 AACAACTGTAGCTGGTGTGG 58.033 50.000 0.00 0.00 33.70 4.17
917 1034 3.761752 ACAAAAACAACTGTAGCTGGTGT 59.238 39.130 0.00 0.00 34.82 4.16
1032 1192 8.037723 ACCTTTCTCCTGTTTAAACTACCTTA 57.962 34.615 18.72 0.00 0.00 2.69
1385 1551 0.984961 CCTGAATCTGAGGCTGGGGA 60.985 60.000 0.00 0.00 0.00 4.81
1521 1702 7.432350 AGTTTTTGAAGAAAACATTTGCACA 57.568 28.000 14.53 0.00 41.29 4.57
1694 1875 2.425829 GGGAAAAGGAAACCCTGGTTCT 60.426 50.000 1.29 0.00 40.39 3.01
1709 1890 4.461198 GAGAGTGAAAAGTCCAGGGAAAA 58.539 43.478 0.00 0.00 0.00 2.29
1866 2059 7.313646 TCTCTCTGAAGAAGTAAATTACGTGG 58.686 38.462 0.00 0.00 0.00 4.94
1982 2563 4.770795 TCTGCATTAGAGAAGTTAAGGGC 58.229 43.478 0.00 0.00 0.00 5.19
2632 3576 3.213402 CTCTCCTCTCCCGACGCC 61.213 72.222 0.00 0.00 0.00 5.68
2633 3577 3.213402 CCTCTCCTCTCCCGACGC 61.213 72.222 0.00 0.00 0.00 5.19
2634 3578 2.517402 CCCTCTCCTCTCCCGACG 60.517 72.222 0.00 0.00 0.00 5.12
2635 3579 2.123640 CCCCTCTCCTCTCCCGAC 60.124 72.222 0.00 0.00 0.00 4.79
2636 3580 1.934341 TTCCCCTCTCCTCTCCCGA 60.934 63.158 0.00 0.00 0.00 5.14
2637 3581 1.456705 CTTCCCCTCTCCTCTCCCG 60.457 68.421 0.00 0.00 0.00 5.14
2638 3582 1.074850 CCTTCCCCTCTCCTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
2639 3583 1.074850 CCCTTCCCCTCTCCTCTCC 60.075 68.421 0.00 0.00 0.00 3.71
2640 3584 1.074850 CCCCTTCCCCTCTCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
2641 3585 0.938926 ATCCCCTTCCCCTCTCCTCT 60.939 60.000 0.00 0.00 0.00 3.69
2642 3586 0.472925 GATCCCCTTCCCCTCTCCTC 60.473 65.000 0.00 0.00 0.00 3.71
2643 3587 0.938926 AGATCCCCTTCCCCTCTCCT 60.939 60.000 0.00 0.00 0.00 3.69
2644 3588 0.868186 TAGATCCCCTTCCCCTCTCC 59.132 60.000 0.00 0.00 0.00 3.71
2645 3589 1.203250 CCTAGATCCCCTTCCCCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
2646 3590 0.871024 CCTAGATCCCCTTCCCCTCT 59.129 60.000 0.00 0.00 0.00 3.69
2647 3591 0.178888 CCCTAGATCCCCTTCCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
2648 3592 1.958330 CCCTAGATCCCCTTCCCCT 59.042 63.158 0.00 0.00 0.00 4.79
2649 3593 1.848431 GCCCTAGATCCCCTTCCCC 60.848 68.421 0.00 0.00 0.00 4.81
2650 3594 2.217745 CGCCCTAGATCCCCTTCCC 61.218 68.421 0.00 0.00 0.00 3.97
2651 3595 1.152312 TCGCCCTAGATCCCCTTCC 60.152 63.158 0.00 0.00 0.00 3.46
2652 3596 1.188871 CCTCGCCCTAGATCCCCTTC 61.189 65.000 0.00 0.00 0.00 3.46
2653 3597 1.152226 CCTCGCCCTAGATCCCCTT 60.152 63.158 0.00 0.00 0.00 3.95
2654 3598 2.528708 CCTCGCCCTAGATCCCCT 59.471 66.667 0.00 0.00 0.00 4.79
2655 3599 2.604991 CCCTCGCCCTAGATCCCC 60.605 72.222 0.00 0.00 0.00 4.81
2656 3600 1.608046 CTCCCTCGCCCTAGATCCC 60.608 68.421 0.00 0.00 0.00 3.85
2657 3601 0.610785 CTCTCCCTCGCCCTAGATCC 60.611 65.000 0.00 0.00 0.00 3.36
2658 3602 0.610785 CCTCTCCCTCGCCCTAGATC 60.611 65.000 0.00 0.00 0.00 2.75
2659 3603 1.462928 CCTCTCCCTCGCCCTAGAT 59.537 63.158 0.00 0.00 0.00 1.98
2660 3604 2.769120 CCCTCTCCCTCGCCCTAGA 61.769 68.421 0.00 0.00 0.00 2.43
2661 3605 2.203567 CCCTCTCCCTCGCCCTAG 60.204 72.222 0.00 0.00 0.00 3.02
2662 3606 4.541648 GCCCTCTCCCTCGCCCTA 62.542 72.222 0.00 0.00 0.00 3.53
2668 3612 4.144727 TCCCTCGCCCTCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
2669 3613 4.150454 CTCCCTCGCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
2670 3614 4.144727 TCTCCCTCGCCCTCTCCC 62.145 72.222 0.00 0.00 0.00 4.30
2671 3615 2.520741 CTCTCCCTCGCCCTCTCC 60.521 72.222 0.00 0.00 0.00 3.71
2672 3616 2.520741 CCTCTCCCTCGCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
2673 3617 4.150454 CCCTCTCCCTCGCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
2674 3618 3.680920 TTCCCTCTCCCTCGCCCTC 62.681 68.421 0.00 0.00 0.00 4.30
2675 3619 3.684628 TTCCCTCTCCCTCGCCCT 61.685 66.667 0.00 0.00 0.00 5.19
2676 3620 3.157949 CTTCCCTCTCCCTCGCCC 61.158 72.222 0.00 0.00 0.00 6.13
2677 3621 3.157949 CCTTCCCTCTCCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
2678 3622 3.855853 GCCTTCCCTCTCCCTCGC 61.856 72.222 0.00 0.00 0.00 5.03
2679 3623 3.532155 CGCCTTCCCTCTCCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
2680 3624 2.042843 TCGCCTTCCCTCTCCCTC 60.043 66.667 0.00 0.00 0.00 4.30
2681 3625 2.042435 CTCGCCTTCCCTCTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
2682 3626 3.157949 CCTCGCCTTCCCTCTCCC 61.158 72.222 0.00 0.00 0.00 4.30
2683 3627 2.042843 TCCTCGCCTTCCCTCTCC 60.043 66.667 0.00 0.00 0.00 3.71
2684 3628 1.076632 TCTCCTCGCCTTCCCTCTC 60.077 63.158 0.00 0.00 0.00 3.20
2685 3629 1.076339 CTCTCCTCGCCTTCCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
2686 3630 2.131067 CCTCTCCTCGCCTTCCCTC 61.131 68.421 0.00 0.00 0.00 4.30
2687 3631 2.042435 CCTCTCCTCGCCTTCCCT 60.042 66.667 0.00 0.00 0.00 4.20
2688 3632 3.157949 CCCTCTCCTCGCCTTCCC 61.158 72.222 0.00 0.00 0.00 3.97
2689 3633 3.855853 GCCCTCTCCTCGCCTTCC 61.856 72.222 0.00 0.00 0.00 3.46
2690 3634 4.214327 CGCCCTCTCCTCGCCTTC 62.214 72.222 0.00 0.00 0.00 3.46
2691 3635 4.761058 TCGCCCTCTCCTCGCCTT 62.761 66.667 0.00 0.00 0.00 4.35
2695 3639 4.507916 TCCCTCGCCCTCTCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
2696 3640 2.520741 CTCCCTCGCCCTCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
2697 3641 4.150454 CCTCCCTCGCCCTCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
2699 3643 4.144727 TCCCTCCCTCGCCCTCTC 62.145 72.222 0.00 0.00 0.00 3.20
2700 3644 4.150454 CTCCCTCCCTCGCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
2701 3645 4.144727 TCTCCCTCCCTCGCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
2702 3646 4.150454 CTCTCCCTCCCTCGCCCT 62.150 72.222 0.00 0.00 0.00 5.19
2707 3651 4.144727 TCGCCCTCTCCCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
2708 3652 4.150454 CTCGCCCTCTCCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
2763 3707 4.933064 CTCTCGATCCACCGCCGC 62.933 72.222 0.00 0.00 0.00 6.53
2764 3708 4.271816 CCTCTCGATCCACCGCCG 62.272 72.222 0.00 0.00 0.00 6.46
2765 3709 3.917760 CCCTCTCGATCCACCGCC 61.918 72.222 0.00 0.00 0.00 6.13
2766 3710 2.833582 TCCCTCTCGATCCACCGC 60.834 66.667 0.00 0.00 0.00 5.68
2767 3711 1.152943 TCTCCCTCTCGATCCACCG 60.153 63.158 0.00 0.00 0.00 4.94
2768 3712 0.825840 CCTCTCCCTCTCGATCCACC 60.826 65.000 0.00 0.00 0.00 4.61
2769 3713 0.825840 CCCTCTCCCTCTCGATCCAC 60.826 65.000 0.00 0.00 0.00 4.02
2770 3714 0.994050 TCCCTCTCCCTCTCGATCCA 60.994 60.000 0.00 0.00 0.00 3.41
2771 3715 0.186386 TTCCCTCTCCCTCTCGATCC 59.814 60.000 0.00 0.00 0.00 3.36
2772 3716 1.133606 AGTTCCCTCTCCCTCTCGATC 60.134 57.143 0.00 0.00 0.00 3.69
2773 3717 0.930726 AGTTCCCTCTCCCTCTCGAT 59.069 55.000 0.00 0.00 0.00 3.59
2774 3718 0.033991 CAGTTCCCTCTCCCTCTCGA 60.034 60.000 0.00 0.00 0.00 4.04
2775 3719 1.040339 CCAGTTCCCTCTCCCTCTCG 61.040 65.000 0.00 0.00 0.00 4.04
2776 3720 1.334384 GCCAGTTCCCTCTCCCTCTC 61.334 65.000 0.00 0.00 0.00 3.20
2777 3721 1.306568 GCCAGTTCCCTCTCCCTCT 60.307 63.158 0.00 0.00 0.00 3.69
2778 3722 2.726351 CGCCAGTTCCCTCTCCCTC 61.726 68.421 0.00 0.00 0.00 4.30
2779 3723 2.685380 CGCCAGTTCCCTCTCCCT 60.685 66.667 0.00 0.00 0.00 4.20
2780 3724 2.683933 TCGCCAGTTCCCTCTCCC 60.684 66.667 0.00 0.00 0.00 4.30
2781 3725 2.726351 CCTCGCCAGTTCCCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
2782 3726 2.726351 CCCTCGCCAGTTCCCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
2783 3727 2.685380 CCCTCGCCAGTTCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
2784 3728 3.787001 CCCCTCGCCAGTTCCCTC 61.787 72.222 0.00 0.00 0.00 4.30
2787 3731 3.787001 CTCCCCCTCGCCAGTTCC 61.787 72.222 0.00 0.00 0.00 3.62
2788 3732 2.683933 TCTCCCCCTCGCCAGTTC 60.684 66.667 0.00 0.00 0.00 3.01
2789 3733 2.685380 CTCTCCCCCTCGCCAGTT 60.685 66.667 0.00 0.00 0.00 3.16
2790 3734 4.787280 CCTCTCCCCCTCGCCAGT 62.787 72.222 0.00 0.00 0.00 4.00
2793 3737 4.798682 TTCCCTCTCCCCCTCGCC 62.799 72.222 0.00 0.00 0.00 5.54
2794 3738 2.687566 TTTCCCTCTCCCCCTCGC 60.688 66.667 0.00 0.00 0.00 5.03
2795 3739 2.066999 CCTTTCCCTCTCCCCCTCG 61.067 68.421 0.00 0.00 0.00 4.63
2796 3740 1.694525 CCCTTTCCCTCTCCCCCTC 60.695 68.421 0.00 0.00 0.00 4.30
2797 3741 2.461637 CCCTTTCCCTCTCCCCCT 59.538 66.667 0.00 0.00 0.00 4.79
2798 3742 2.696504 CCCCTTTCCCTCTCCCCC 60.697 72.222 0.00 0.00 0.00 5.40
2799 3743 2.696504 CCCCCTTTCCCTCTCCCC 60.697 72.222 0.00 0.00 0.00 4.81
2817 3761 3.930012 CTCCCCCTTCGCCCGATC 61.930 72.222 0.00 0.00 0.00 3.69
2818 3762 4.475444 TCTCCCCCTTCGCCCGAT 62.475 66.667 0.00 0.00 0.00 4.18
2822 3766 4.798682 TCCCTCTCCCCCTTCGCC 62.799 72.222 0.00 0.00 0.00 5.54
2823 3767 2.687566 TTCCCTCTCCCCCTTCGC 60.688 66.667 0.00 0.00 0.00 4.70
2824 3768 2.066999 CCTTCCCTCTCCCCCTTCG 61.067 68.421 0.00 0.00 0.00 3.79
2825 3769 1.694525 CCCTTCCCTCTCCCCCTTC 60.695 68.421 0.00 0.00 0.00 3.46
2826 3770 2.461637 CCCTTCCCTCTCCCCCTT 59.538 66.667 0.00 0.00 0.00 3.95
2827 3771 3.711782 CCCCTTCCCTCTCCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
2828 3772 4.845307 CCCCCTTCCCTCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
2829 3773 2.993038 GATCCCCCTTCCCTCTCCCC 62.993 70.000 0.00 0.00 0.00 4.81
2830 3774 1.462432 GATCCCCCTTCCCTCTCCC 60.462 68.421 0.00 0.00 0.00 4.30
2831 3775 1.839296 CGATCCCCCTTCCCTCTCC 60.839 68.421 0.00 0.00 0.00 3.71
2832 3776 1.839296 CCGATCCCCCTTCCCTCTC 60.839 68.421 0.00 0.00 0.00 3.20
2833 3777 2.287251 CCGATCCCCCTTCCCTCT 59.713 66.667 0.00 0.00 0.00 3.69
2834 3778 2.849646 CCCGATCCCCCTTCCCTC 60.850 72.222 0.00 0.00 0.00 4.30
2837 3781 4.191015 GTGCCCGATCCCCCTTCC 62.191 72.222 0.00 0.00 0.00 3.46
2838 3782 2.284515 ATTGTGCCCGATCCCCCTTC 62.285 60.000 0.00 0.00 0.00 3.46
2839 3783 0.991355 TATTGTGCCCGATCCCCCTT 60.991 55.000 0.00 0.00 0.00 3.95
2840 3784 1.385347 TATTGTGCCCGATCCCCCT 60.385 57.895 0.00 0.00 0.00 4.79
2841 3785 1.228154 GTATTGTGCCCGATCCCCC 60.228 63.158 0.00 0.00 0.00 5.40
2842 3786 1.053424 TAGTATTGTGCCCGATCCCC 58.947 55.000 0.00 0.00 0.00 4.81
2843 3787 2.922740 TTAGTATTGTGCCCGATCCC 57.077 50.000 0.00 0.00 0.00 3.85
2844 3788 3.074412 CCATTAGTATTGTGCCCGATCC 58.926 50.000 0.00 0.00 0.00 3.36
2845 3789 2.484264 GCCATTAGTATTGTGCCCGATC 59.516 50.000 0.00 0.00 0.00 3.69
2846 3790 2.504367 GCCATTAGTATTGTGCCCGAT 58.496 47.619 0.00 0.00 0.00 4.18
2847 3791 1.808512 CGCCATTAGTATTGTGCCCGA 60.809 52.381 0.00 0.00 0.00 5.14
2848 3792 0.586319 CGCCATTAGTATTGTGCCCG 59.414 55.000 0.00 0.00 0.00 6.13
2849 3793 0.310854 GCGCCATTAGTATTGTGCCC 59.689 55.000 0.00 0.00 29.25 5.36
2850 3794 1.021202 TGCGCCATTAGTATTGTGCC 58.979 50.000 4.18 0.00 33.30 5.01
2851 3795 1.268539 GGTGCGCCATTAGTATTGTGC 60.269 52.381 12.58 0.00 34.47 4.57
2852 3796 2.287915 GAGGTGCGCCATTAGTATTGTG 59.712 50.000 20.59 0.00 37.19 3.33
2853 3797 2.093181 TGAGGTGCGCCATTAGTATTGT 60.093 45.455 20.59 0.00 37.19 2.71
2854 3798 2.287915 GTGAGGTGCGCCATTAGTATTG 59.712 50.000 20.59 0.00 37.19 1.90
2855 3799 2.561569 GTGAGGTGCGCCATTAGTATT 58.438 47.619 20.59 0.00 37.19 1.89
2856 3800 1.202651 GGTGAGGTGCGCCATTAGTAT 60.203 52.381 20.59 0.00 46.72 2.12
2857 3801 0.177141 GGTGAGGTGCGCCATTAGTA 59.823 55.000 20.59 0.00 46.72 1.82
2858 3802 1.078426 GGTGAGGTGCGCCATTAGT 60.078 57.895 20.59 0.00 46.72 2.24
2859 3803 3.813596 GGTGAGGTGCGCCATTAG 58.186 61.111 20.59 0.00 46.72 1.73
2879 3823 1.356624 GACATGCTAATGGCGCACC 59.643 57.895 10.83 0.00 45.43 5.01
2880 3824 1.356624 GGACATGCTAATGGCGCAC 59.643 57.895 10.83 0.00 43.50 5.34
2881 3825 0.466007 ATGGACATGCTAATGGCGCA 60.466 50.000 10.83 0.00 43.50 6.09
2882 3826 1.197721 GTATGGACATGCTAATGGCGC 59.802 52.381 0.00 0.00 43.50 6.53
2883 3827 2.771089 AGTATGGACATGCTAATGGCG 58.229 47.619 0.88 0.00 43.50 5.69
2898 3842 1.867233 GTGAGGTGCGCCATTAGTATG 59.133 52.381 20.59 0.00 37.19 2.39
2899 3843 1.202651 GGTGAGGTGCGCCATTAGTAT 60.203 52.381 20.59 0.00 46.72 2.12
2900 3844 0.177141 GGTGAGGTGCGCCATTAGTA 59.823 55.000 20.59 0.00 46.72 1.82
2901 3845 1.078426 GGTGAGGTGCGCCATTAGT 60.078 57.895 20.59 0.00 46.72 2.24
2902 3846 3.813596 GGTGAGGTGCGCCATTAG 58.186 61.111 20.59 0.00 46.72 1.73
2940 3884 6.137794 TGTTGGCTCGAGTTGAAATAAAAA 57.862 33.333 15.13 0.00 0.00 1.94
2941 3885 5.278266 CCTGTTGGCTCGAGTTGAAATAAAA 60.278 40.000 15.13 0.00 0.00 1.52
2942 3886 4.215399 CCTGTTGGCTCGAGTTGAAATAAA 59.785 41.667 15.13 0.00 0.00 1.40
2943 3887 3.751175 CCTGTTGGCTCGAGTTGAAATAA 59.249 43.478 15.13 0.00 0.00 1.40
2944 3888 3.244422 ACCTGTTGGCTCGAGTTGAAATA 60.244 43.478 15.13 1.64 36.63 1.40
2945 3889 2.154462 CCTGTTGGCTCGAGTTGAAAT 58.846 47.619 15.13 0.00 0.00 2.17
2946 3890 1.134220 ACCTGTTGGCTCGAGTTGAAA 60.134 47.619 15.13 0.82 36.63 2.69
2947 3891 0.468226 ACCTGTTGGCTCGAGTTGAA 59.532 50.000 15.13 1.53 36.63 2.69
2948 3892 0.468226 AACCTGTTGGCTCGAGTTGA 59.532 50.000 15.13 0.00 36.63 3.18
2949 3893 2.163818 TAACCTGTTGGCTCGAGTTG 57.836 50.000 15.13 0.00 36.63 3.16
2950 3894 2.038557 ACATAACCTGTTGGCTCGAGTT 59.961 45.455 15.13 0.81 32.90 3.01
2951 3895 1.623811 ACATAACCTGTTGGCTCGAGT 59.376 47.619 15.13 0.00 32.90 4.18
2952 3896 2.386661 ACATAACCTGTTGGCTCGAG 57.613 50.000 8.45 8.45 32.90 4.04
2953 3897 2.093869 GGTACATAACCTGTTGGCTCGA 60.094 50.000 0.00 0.00 45.75 4.04
2954 3898 2.277084 GGTACATAACCTGTTGGCTCG 58.723 52.381 0.00 0.00 45.75 5.03
2965 3909 5.116882 GGATCAGTTCTGGTGGTACATAAC 58.883 45.833 0.00 0.00 44.52 1.89
2966 3910 4.780554 TGGATCAGTTCTGGTGGTACATAA 59.219 41.667 0.00 0.00 44.52 1.90
2967 3911 4.161565 GTGGATCAGTTCTGGTGGTACATA 59.838 45.833 0.00 0.00 44.52 2.29
2968 3912 3.055094 GTGGATCAGTTCTGGTGGTACAT 60.055 47.826 0.00 0.00 44.52 2.29
2969 3913 2.301870 GTGGATCAGTTCTGGTGGTACA 59.698 50.000 0.00 0.00 0.00 2.90
2970 3914 2.301870 TGTGGATCAGTTCTGGTGGTAC 59.698 50.000 0.00 0.00 0.00 3.34
2971 3915 2.615391 TGTGGATCAGTTCTGGTGGTA 58.385 47.619 0.00 0.00 0.00 3.25
2972 3916 1.434188 TGTGGATCAGTTCTGGTGGT 58.566 50.000 0.00 0.00 0.00 4.16
2973 3917 2.026915 TGATGTGGATCAGTTCTGGTGG 60.027 50.000 0.00 0.00 33.40 4.61
2974 3918 3.339253 TGATGTGGATCAGTTCTGGTG 57.661 47.619 0.00 0.00 33.40 4.17
2975 3919 3.328931 ACTTGATGTGGATCAGTTCTGGT 59.671 43.478 0.00 0.00 39.81 4.00
2976 3920 3.937706 GACTTGATGTGGATCAGTTCTGG 59.062 47.826 0.00 0.00 39.81 3.86
2977 3921 3.937706 GGACTTGATGTGGATCAGTTCTG 59.062 47.826 0.00 0.00 39.81 3.02
2978 3922 3.054802 GGGACTTGATGTGGATCAGTTCT 60.055 47.826 0.00 0.00 39.81 3.01
2979 3923 3.274288 GGGACTTGATGTGGATCAGTTC 58.726 50.000 0.00 0.00 39.81 3.01
2980 3924 2.025887 GGGGACTTGATGTGGATCAGTT 60.026 50.000 0.00 0.00 39.81 3.16
2981 3925 1.561542 GGGGACTTGATGTGGATCAGT 59.438 52.381 0.00 0.00 39.81 3.41
2982 3926 1.842562 AGGGGACTTGATGTGGATCAG 59.157 52.381 0.00 0.00 39.81 2.90
2983 3927 1.839994 GAGGGGACTTGATGTGGATCA 59.160 52.381 0.00 0.00 44.43 2.92
2984 3928 2.122768 AGAGGGGACTTGATGTGGATC 58.877 52.381 0.00 0.00 44.43 3.36
2985 3929 2.277008 AGAGGGGACTTGATGTGGAT 57.723 50.000 0.00 0.00 44.43 3.41
2986 3930 2.044492 AGTAGAGGGGACTTGATGTGGA 59.956 50.000 0.00 0.00 44.43 4.02
2987 3931 2.472029 AGTAGAGGGGACTTGATGTGG 58.528 52.381 0.00 0.00 44.43 4.17
2988 3932 3.068873 GCTAGTAGAGGGGACTTGATGTG 59.931 52.174 0.00 0.00 44.43 3.21
2989 3933 3.052490 AGCTAGTAGAGGGGACTTGATGT 60.052 47.826 0.00 0.00 44.43 3.06
2990 3934 3.571590 AGCTAGTAGAGGGGACTTGATG 58.428 50.000 0.00 0.00 44.43 3.07
2991 3935 3.749310 CGAGCTAGTAGAGGGGACTTGAT 60.749 52.174 0.00 0.00 44.43 2.57
2992 3936 2.421670 CGAGCTAGTAGAGGGGACTTGA 60.422 54.545 0.00 0.00 44.43 3.02
2993 3937 1.950909 CGAGCTAGTAGAGGGGACTTG 59.049 57.143 0.00 0.00 44.43 3.16
2994 3938 1.845143 TCGAGCTAGTAGAGGGGACTT 59.155 52.381 0.00 0.00 44.43 3.01
2996 3940 1.141455 AGTCGAGCTAGTAGAGGGGAC 59.859 57.143 0.00 2.57 0.00 4.46
2997 3941 1.141254 CAGTCGAGCTAGTAGAGGGGA 59.859 57.143 0.00 0.00 0.00 4.81
2998 3942 1.600023 CAGTCGAGCTAGTAGAGGGG 58.400 60.000 0.00 0.00 0.00 4.79
2999 3943 1.134037 ACCAGTCGAGCTAGTAGAGGG 60.134 57.143 0.00 0.00 0.00 4.30
3000 3944 2.215196 GACCAGTCGAGCTAGTAGAGG 58.785 57.143 0.00 0.00 0.00 3.69
3001 3945 2.869801 CTGACCAGTCGAGCTAGTAGAG 59.130 54.545 0.00 0.00 0.00 2.43
3002 3946 2.907634 CTGACCAGTCGAGCTAGTAGA 58.092 52.381 0.00 0.00 0.00 2.59
3003 3947 1.332375 GCTGACCAGTCGAGCTAGTAG 59.668 57.143 12.19 0.00 33.80 2.57
3004 3948 1.339727 TGCTGACCAGTCGAGCTAGTA 60.340 52.381 17.23 0.00 35.91 1.82
3005 3949 0.609406 TGCTGACCAGTCGAGCTAGT 60.609 55.000 17.23 0.00 35.91 2.57
3006 3950 0.100325 CTGCTGACCAGTCGAGCTAG 59.900 60.000 17.23 11.74 36.79 3.42
3007 3951 1.938657 GCTGCTGACCAGTCGAGCTA 61.939 60.000 17.23 8.03 43.71 3.32
3008 3952 2.969016 CTGCTGACCAGTCGAGCT 59.031 61.111 17.23 0.00 36.79 4.09
3009 3953 2.813042 GCTGCTGACCAGTCGAGC 60.813 66.667 12.43 12.43 43.71 5.03
3010 3954 2.125753 GGCTGCTGACCAGTCGAG 60.126 66.667 0.00 0.00 43.71 4.04
3016 3960 1.372683 GAGAACTGGCTGCTGACCA 59.627 57.895 0.00 0.36 35.40 4.02
3017 3961 0.952984 GTGAGAACTGGCTGCTGACC 60.953 60.000 0.00 0.00 0.00 4.02
3018 3962 0.250038 TGTGAGAACTGGCTGCTGAC 60.250 55.000 0.00 0.00 0.00 3.51
3019 3963 0.250038 GTGTGAGAACTGGCTGCTGA 60.250 55.000 0.00 0.00 0.00 4.26
3020 3964 1.233285 GGTGTGAGAACTGGCTGCTG 61.233 60.000 0.00 0.00 0.00 4.41
3021 3965 1.072159 GGTGTGAGAACTGGCTGCT 59.928 57.895 0.00 0.00 0.00 4.24
3022 3966 1.227943 TGGTGTGAGAACTGGCTGC 60.228 57.895 0.00 0.00 0.00 5.25
3023 3967 0.604780 CCTGGTGTGAGAACTGGCTG 60.605 60.000 0.00 0.00 0.00 4.85
3024 3968 0.764369 TCCTGGTGTGAGAACTGGCT 60.764 55.000 0.00 0.00 0.00 4.75
3025 3969 0.321122 CTCCTGGTGTGAGAACTGGC 60.321 60.000 0.00 0.00 31.26 4.85
3026 3970 0.322975 CCTCCTGGTGTGAGAACTGG 59.677 60.000 0.00 0.00 31.26 4.00
3027 3971 1.051812 ACCTCCTGGTGTGAGAACTG 58.948 55.000 0.00 0.00 46.51 3.16
3028 3972 3.560226 ACCTCCTGGTGTGAGAACT 57.440 52.632 0.00 0.00 46.51 3.01
3041 3985 1.605971 GAGTCGAACCCAGGACCTCC 61.606 65.000 0.00 0.00 33.66 4.30
3042 3986 1.605971 GGAGTCGAACCCAGGACCTC 61.606 65.000 0.00 0.00 33.66 3.85
3043 3987 1.609794 GGAGTCGAACCCAGGACCT 60.610 63.158 0.00 0.00 33.66 3.85
3044 3988 2.657066 GGGAGTCGAACCCAGGACC 61.657 68.421 19.97 0.00 46.05 4.46
3045 3989 2.979649 GGGAGTCGAACCCAGGAC 59.020 66.667 19.97 0.00 46.05 3.85
3050 3994 3.003763 AGCCTGGGAGTCGAACCC 61.004 66.667 18.59 18.59 46.87 4.11
3051 3995 2.579738 GAGCCTGGGAGTCGAACC 59.420 66.667 0.00 0.00 0.00 3.62
3052 3996 2.283529 TGGAGCCTGGGAGTCGAAC 61.284 63.158 0.00 0.00 0.00 3.95
3053 3997 2.119611 TGGAGCCTGGGAGTCGAA 59.880 61.111 0.00 0.00 0.00 3.71
3054 3998 2.680352 GTGGAGCCTGGGAGTCGA 60.680 66.667 0.00 0.00 0.00 4.20
3055 3999 2.111999 TTTGTGGAGCCTGGGAGTCG 62.112 60.000 0.00 0.00 0.00 4.18
3056 4000 0.110486 TTTTGTGGAGCCTGGGAGTC 59.890 55.000 0.00 0.00 0.00 3.36
3057 4001 0.555769 TTTTTGTGGAGCCTGGGAGT 59.444 50.000 0.00 0.00 0.00 3.85
3058 4002 3.437642 TTTTTGTGGAGCCTGGGAG 57.562 52.632 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.