Multiple sequence alignment - TraesCS3B01G170600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G170600 chr3B 100.000 4980 0 0 1 4980 171592429 171597408 0.000000e+00 9197
1 TraesCS3B01G170600 chr3D 89.520 4504 266 79 1 4404 116402319 116406716 0.000000e+00 5513
2 TraesCS3B01G170600 chr3D 87.468 391 25 10 4485 4869 116406718 116407090 3.560000e-116 429
3 TraesCS3B01G170600 chr3A 90.760 2262 121 31 2023 4223 125489016 125491250 0.000000e+00 2939
4 TraesCS3B01G170600 chr3A 92.392 1183 59 15 827 1988 125487840 125489012 0.000000e+00 1657
5 TraesCS3B01G170600 chr3A 86.905 336 16 14 4541 4869 125494850 125495164 7.930000e-93 351
6 TraesCS3B01G170600 chr3A 88.530 279 23 5 101 378 125487165 125487435 3.720000e-86 329
7 TraesCS3B01G170600 chr4A 81.692 934 106 26 2856 3730 598709991 598710918 0.000000e+00 717
8 TraesCS3B01G170600 chr4A 80.297 538 60 25 2264 2781 598709440 598709951 1.020000e-96 364
9 TraesCS3B01G170600 chr4B 86.111 432 40 8 4045 4470 476236179 476236596 9.830000e-122 448
10 TraesCS3B01G170600 chr4B 87.259 259 29 2 2264 2519 7868505 7868248 4.880000e-75 292
11 TraesCS3B01G170600 chr4B 78.345 411 53 19 2387 2781 7804486 7804876 3.000000e-57 233
12 TraesCS3B01G170600 chr4B 88.172 186 18 3 4521 4706 476236606 476236787 8.390000e-53 219
13 TraesCS3B01G170600 chr1B 89.701 301 29 2 3045 3344 347560635 347560934 2.810000e-102 383
14 TraesCS3B01G170600 chr2D 88.079 302 33 3 3044 3344 474087367 474087666 6.130000e-94 355
15 TraesCS3B01G170600 chr4D 79.736 454 62 18 2365 2800 4981223 4980782 8.100000e-78 302
16 TraesCS3B01G170600 chr4D 87.619 105 10 2 1077 1181 5025535 5025434 8.760000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G170600 chr3B 171592429 171597408 4979 False 9197.0 9197 100.00000 1 4980 1 chr3B.!!$F1 4979
1 TraesCS3B01G170600 chr3D 116402319 116407090 4771 False 2971.0 5513 88.49400 1 4869 2 chr3D.!!$F1 4868
2 TraesCS3B01G170600 chr3A 125487165 125495164 7999 False 1319.0 2939 89.64675 101 4869 4 chr3A.!!$F1 4768
3 TraesCS3B01G170600 chr4A 598709440 598710918 1478 False 540.5 717 80.99450 2264 3730 2 chr4A.!!$F1 1466
4 TraesCS3B01G170600 chr4B 476236179 476236787 608 False 333.5 448 87.14150 4045 4706 2 chr4B.!!$F2 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
846 891 0.753111 GGCCCACCTGAATGGATGTC 60.753 60.0 0.0 0.0 43.02 3.06 F
1928 2001 0.107654 AGTCGCTGGGCATAGTTTCC 60.108 55.0 0.0 0.0 0.00 3.13 F
2706 2818 0.027455 TTCGTTGCTGTTTGCTGTCG 59.973 50.0 0.0 0.0 43.37 4.35 F
3084 3235 0.169009 GTTCTTCGTCCTGCCATTGC 59.831 55.0 0.0 0.0 38.26 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1977 2050 0.530744 TGGACCGAATCGAAGACCTG 59.469 55.000 3.36 0.00 42.51 4.00 R
3677 3854 0.038251 GCGTGATCCTGACAGACACA 60.038 55.000 19.26 8.77 0.00 3.72 R
3744 3924 1.510623 CGACAACGCAGCATCAAGC 60.511 57.895 0.00 0.00 46.19 4.01 R
4881 8399 0.034059 ACCCAGTTCAGACTTCAGCG 59.966 55.000 0.00 0.00 32.54 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 76 3.087031 CACAGAGCTTCATTGGACCATT 58.913 45.455 0.00 0.00 0.00 3.16
80 87 4.665833 ATTGGACCATTCAATGATGCAG 57.334 40.909 0.00 0.00 34.01 4.41
85 92 4.439700 GGACCATTCAATGATGCAGACTTG 60.440 45.833 0.00 0.00 0.00 3.16
99 108 6.985188 TGCAGACTTGGATATCACTTAAAC 57.015 37.500 4.83 0.00 0.00 2.01
107 116 9.905713 ACTTGGATATCACTTAAACATGTGTAT 57.094 29.630 0.00 0.00 35.82 2.29
120 129 3.244387 ACATGTGTATATGGCATGCGGTA 60.244 43.478 12.44 7.37 42.50 4.02
126 135 1.740297 TATGGCATGCGGTAAACGTT 58.260 45.000 12.44 0.00 46.52 3.99
163 174 3.756963 GGACACTGTAAATTCTCCAACCC 59.243 47.826 0.00 0.00 0.00 4.11
185 196 1.987770 GGAAACAATGCGCTGATTGTG 59.012 47.619 22.30 8.48 44.15 3.33
212 223 6.010219 TCTATTTCCTGTTCTTTCCCCTTTG 58.990 40.000 0.00 0.00 0.00 2.77
215 226 4.258457 TCCTGTTCTTTCCCCTTTGAAA 57.742 40.909 0.00 0.00 33.42 2.69
222 233 3.132111 TCTTTCCCCTTTGAAACAACTGC 59.868 43.478 0.00 0.00 31.28 4.40
235 246 5.472137 TGAAACAACTGCCAGAATTACCTAC 59.528 40.000 0.00 0.00 0.00 3.18
236 247 3.951663 ACAACTGCCAGAATTACCTACC 58.048 45.455 0.00 0.00 0.00 3.18
238 249 4.781087 ACAACTGCCAGAATTACCTACCTA 59.219 41.667 0.00 0.00 0.00 3.08
239 250 5.104900 ACAACTGCCAGAATTACCTACCTAG 60.105 44.000 0.00 0.00 0.00 3.02
240 251 4.621769 ACTGCCAGAATTACCTACCTAGT 58.378 43.478 0.00 0.00 0.00 2.57
241 252 5.030820 ACTGCCAGAATTACCTACCTAGTT 58.969 41.667 0.00 0.00 0.00 2.24
242 253 5.487845 ACTGCCAGAATTACCTACCTAGTTT 59.512 40.000 0.00 0.00 0.00 2.66
243 254 5.985911 TGCCAGAATTACCTACCTAGTTTC 58.014 41.667 0.00 0.00 0.00 2.78
244 255 5.486063 TGCCAGAATTACCTACCTAGTTTCA 59.514 40.000 0.00 0.00 0.00 2.69
245 256 6.049790 GCCAGAATTACCTACCTAGTTTCAG 58.950 44.000 0.00 0.00 0.00 3.02
246 257 6.127140 GCCAGAATTACCTACCTAGTTTCAGA 60.127 42.308 0.00 0.00 0.00 3.27
252 269 7.477945 TTACCTACCTAGTTTCAGAAGAAGG 57.522 40.000 6.14 6.14 34.71 3.46
283 300 1.282157 ACCTGACCATGCTTCCCTTAC 59.718 52.381 0.00 0.00 0.00 2.34
285 302 2.420687 CCTGACCATGCTTCCCTTACTC 60.421 54.545 0.00 0.00 0.00 2.59
374 391 2.033927 TCTGCGACACTGAGCTATGATC 59.966 50.000 0.00 0.00 0.00 2.92
376 393 2.428530 TGCGACACTGAGCTATGATCTT 59.571 45.455 0.00 0.00 0.00 2.40
377 394 3.049206 GCGACACTGAGCTATGATCTTC 58.951 50.000 0.00 0.00 0.00 2.87
384 401 7.264221 ACACTGAGCTATGATCTTCTTACTTG 58.736 38.462 0.00 0.00 0.00 3.16
397 414 1.558167 TTACTTGGGCGCCTGATGGA 61.558 55.000 28.56 9.54 34.57 3.41
398 415 1.344953 TACTTGGGCGCCTGATGGAT 61.345 55.000 28.56 8.30 34.57 3.41
414 431 4.512571 TGATGGATATTGTCAACATGCTCG 59.487 41.667 0.00 0.00 0.00 5.03
422 439 3.781307 AACATGCTCGGGCGCCTA 61.781 61.111 28.56 14.32 42.25 3.93
449 466 0.898320 AGACCTGTTCATCTCCACCG 59.102 55.000 0.00 0.00 0.00 4.94
502 519 6.914654 TCCCTTTTTGTTGATGAATGATGA 57.085 33.333 0.00 0.00 0.00 2.92
517 534 1.554617 TGATGAACGGATCAAGCTCCA 59.445 47.619 0.00 0.00 42.54 3.86
522 539 5.745312 TGAACGGATCAAGCTCCATATAT 57.255 39.130 0.00 0.00 34.30 0.86
523 540 6.114187 TGAACGGATCAAGCTCCATATATT 57.886 37.500 0.00 0.00 34.30 1.28
527 544 5.221722 ACGGATCAAGCTCCATATATTGTGT 60.222 40.000 0.00 0.00 34.78 3.72
548 565 7.057149 GTGTATAAATGCTACACGAAACACT 57.943 36.000 0.00 0.00 39.51 3.55
549 566 6.953743 GTGTATAAATGCTACACGAAACACTG 59.046 38.462 0.00 0.00 39.51 3.66
605 631 6.424812 CCTTGATTCCATTTGTTCCTTCAAAC 59.575 38.462 0.00 0.00 39.58 2.93
666 692 6.404734 GCCGAATCAGATTCCATTTGTTTACT 60.405 38.462 16.23 0.00 35.89 2.24
706 732 1.612676 TTGCTCTGTGCTTGCATTCT 58.387 45.000 0.00 0.00 43.37 2.40
708 734 2.995283 TGCTCTGTGCTTGCATTCTAT 58.005 42.857 0.00 0.00 43.37 1.98
709 735 2.681344 TGCTCTGTGCTTGCATTCTATG 59.319 45.455 0.00 0.00 43.37 2.23
715 741 1.030457 GCTTGCATTCTATGGCTGCT 58.970 50.000 0.00 0.00 36.84 4.24
716 742 2.224606 GCTTGCATTCTATGGCTGCTA 58.775 47.619 0.00 0.00 36.84 3.49
717 743 2.225963 GCTTGCATTCTATGGCTGCTAG 59.774 50.000 0.00 9.25 40.28 3.42
718 744 3.736720 CTTGCATTCTATGGCTGCTAGA 58.263 45.455 0.00 0.00 39.90 2.43
719 745 3.117491 TGCATTCTATGGCTGCTAGAC 57.883 47.619 0.00 0.00 36.84 2.59
720 746 2.435437 TGCATTCTATGGCTGCTAGACA 59.565 45.455 0.00 0.00 37.84 3.41
721 747 2.805099 GCATTCTATGGCTGCTAGACAC 59.195 50.000 0.00 0.00 35.04 3.67
723 749 3.808466 TTCTATGGCTGCTAGACACTG 57.192 47.619 0.00 0.00 35.04 3.66
739 779 2.291153 ACACTGCCACTTAATCCTGCAT 60.291 45.455 0.00 0.00 0.00 3.96
842 887 3.727258 CGGGCCCACCTGAATGGA 61.727 66.667 24.92 0.00 46.41 3.41
843 888 3.018901 GGGCCCACCTGAATGGAT 58.981 61.111 19.95 0.00 43.02 3.41
844 889 1.456331 GGGCCCACCTGAATGGATG 60.456 63.158 19.95 0.00 43.02 3.51
845 890 1.307647 GGCCCACCTGAATGGATGT 59.692 57.895 0.00 0.00 43.02 3.06
846 891 0.753111 GGCCCACCTGAATGGATGTC 60.753 60.000 0.00 0.00 43.02 3.06
847 892 1.097547 GCCCACCTGAATGGATGTCG 61.098 60.000 0.00 0.00 43.02 4.35
848 893 1.097547 CCCACCTGAATGGATGTCGC 61.098 60.000 0.00 0.00 43.02 5.19
849 894 1.431488 CCACCTGAATGGATGTCGCG 61.431 60.000 0.00 0.00 43.02 5.87
850 895 1.153369 ACCTGAATGGATGTCGCGG 60.153 57.895 6.13 0.00 39.71 6.46
851 896 2.537560 CCTGAATGGATGTCGCGGC 61.538 63.158 2.29 2.29 38.35 6.53
852 897 2.874694 CTGAATGGATGTCGCGGCG 61.875 63.158 17.70 17.70 0.00 6.46
853 898 3.640000 GAATGGATGTCGCGGCGG 61.640 66.667 23.46 3.89 0.00 6.13
899 948 4.357947 GCACGCGTGGACTCTCCA 62.358 66.667 37.47 0.00 45.98 3.86
922 971 4.708177 GCTATATGCTTCAGTTCTCCCAA 58.292 43.478 0.00 0.00 38.95 4.12
933 982 5.147032 TCAGTTCTCCCAACCATTTTCAAT 58.853 37.500 0.00 0.00 0.00 2.57
1448 1508 1.522900 CCCTCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
1449 1509 1.421646 CCCTCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
1467 1527 3.429080 CTGCTCTCCCGCTGCTCTC 62.429 68.421 0.00 0.00 0.00 3.20
1483 1543 1.745653 CTCTCTCTGGTGTATGCGTGA 59.254 52.381 0.00 0.00 0.00 4.35
1532 1592 0.900647 TGGTGGCGGGTTTAATTGGG 60.901 55.000 0.00 0.00 0.00 4.12
1582 1642 4.583871 AGTTTGAATCCTCTGGTCATGAC 58.416 43.478 17.91 17.91 0.00 3.06
1588 1648 0.318441 CCTCTGGTCATGACGTGTGT 59.682 55.000 19.33 0.00 0.00 3.72
1613 1674 0.550914 TGGTTCTGGAACTTGGTGCT 59.449 50.000 12.34 0.00 40.94 4.40
1617 1678 0.756294 TCTGGAACTTGGTGCTTCGA 59.244 50.000 0.00 0.00 0.00 3.71
1621 1682 2.151202 GGAACTTGGTGCTTCGAATCA 58.849 47.619 0.00 0.00 0.00 2.57
1636 1697 2.435805 CGAATCAGAGGGAGGGAATTGA 59.564 50.000 0.00 0.00 0.00 2.57
1691 1764 7.859325 AATTACCTACTGAATTGCGTATTGT 57.141 32.000 0.00 0.00 0.00 2.71
1693 1766 7.997107 TTACCTACTGAATTGCGTATTGTAG 57.003 36.000 0.00 0.00 0.00 2.74
1712 1785 1.615392 AGTGGTTTGAATTCTGCTGCC 59.385 47.619 7.05 3.07 0.00 4.85
1813 1886 4.555610 GCCTGGAGCTTGGAGATG 57.444 61.111 0.00 0.00 38.99 2.90
1892 1965 4.394729 TCGAAATTCTGGGCTTAGTGTTT 58.605 39.130 0.00 0.00 0.00 2.83
1924 1997 1.819229 CAGAGTCGCTGGGCATAGT 59.181 57.895 0.00 0.00 41.07 2.12
1928 2001 0.107654 AGTCGCTGGGCATAGTTTCC 60.108 55.000 0.00 0.00 0.00 3.13
1952 2025 5.067273 TGTGTTTGAATTGATTCGGGTACT 58.933 37.500 0.00 0.00 39.62 2.73
1959 2032 4.553330 ATTGATTCGGGTACTGTTCTGT 57.447 40.909 0.00 0.00 35.30 3.41
1965 2038 1.069513 CGGGTACTGTTCTGTTGGTGA 59.930 52.381 0.00 0.00 0.00 4.02
1977 2050 3.054878 CTGTTGGTGATTTTGAAGCAGC 58.945 45.455 1.60 1.60 44.83 5.25
1982 2055 2.352127 GGTGATTTTGAAGCAGCAGGTC 60.352 50.000 0.00 0.00 44.08 3.85
1990 2063 1.663135 GAAGCAGCAGGTCTTCGATTC 59.337 52.381 0.00 0.00 30.79 2.52
1993 2066 0.108615 CAGCAGGTCTTCGATTCGGT 60.109 55.000 6.18 0.00 0.00 4.69
1997 2070 0.818296 AGGTCTTCGATTCGGTCCAG 59.182 55.000 6.18 0.00 0.00 3.86
1998 2071 0.531200 GGTCTTCGATTCGGTCCAGT 59.469 55.000 6.18 0.00 0.00 4.00
2018 2091 3.512516 GCCCTCTGCATTGCCGTC 61.513 66.667 6.12 0.00 40.77 4.79
2021 2094 2.758089 CCTCTGCATTGCCGTCTGC 61.758 63.158 6.12 0.00 41.77 4.26
2101 2174 2.321213 GCTGGAGCGAAGTGTTTGT 58.679 52.632 0.00 0.00 0.00 2.83
2102 2175 0.235926 GCTGGAGCGAAGTGTTTGTC 59.764 55.000 0.00 0.00 0.00 3.18
2169 2253 2.103094 CGATGCTTCAGGGATTGGAGTA 59.897 50.000 0.08 0.00 34.60 2.59
2188 2280 0.746659 ACTGGTTTCCTGCTTTGTGC 59.253 50.000 0.00 0.00 43.25 4.57
2211 2303 5.277538 GCTGTGATTCAGGAATTCGTTATCC 60.278 44.000 13.41 8.32 43.78 2.59
2240 2332 1.337703 TGTGATTTGTGCTGCAGGTTC 59.662 47.619 17.12 0.00 0.00 3.62
2252 2344 3.730061 GCTGCAGGTTCGAAATCTGAATG 60.730 47.826 24.97 16.73 0.00 2.67
2432 2525 4.717629 TCGCTCCGCACCAACGAG 62.718 66.667 0.00 0.00 34.06 4.18
2495 2588 1.532794 CTCCTGGCGCCTCCTCTAT 60.533 63.158 29.70 0.00 35.26 1.98
2530 2623 3.365265 GCACCAAGGCCTCCGTTG 61.365 66.667 5.23 0.00 36.77 4.10
2531 2624 2.429930 CACCAAGGCCTCCGTTGA 59.570 61.111 5.23 0.00 38.72 3.18
2532 2625 1.672356 CACCAAGGCCTCCGTTGAG 60.672 63.158 5.23 0.00 38.72 3.02
2533 2626 2.747855 CCAAGGCCTCCGTTGAGC 60.748 66.667 5.23 0.00 38.72 4.26
2535 2628 1.302832 CAAGGCCTCCGTTGAGCTT 60.303 57.895 5.23 0.00 38.72 3.74
2536 2629 0.036388 CAAGGCCTCCGTTGAGCTTA 60.036 55.000 5.23 0.00 38.72 3.09
2537 2630 0.912486 AAGGCCTCCGTTGAGCTTAT 59.088 50.000 5.23 0.00 37.29 1.73
2542 2635 2.827652 CCTCCGTTGAGCTTATTCCTC 58.172 52.381 0.00 0.00 37.29 3.71
2553 2646 1.141858 CTTATTCCTCCCTCCCACTGC 59.858 57.143 0.00 0.00 0.00 4.40
2601 2696 1.066502 GCTCCTCTGTCCTCTGTTTCC 60.067 57.143 0.00 0.00 0.00 3.13
2690 2801 1.376683 TCATTTCCCGGCCTGTTCG 60.377 57.895 0.00 0.00 0.00 3.95
2700 2812 0.594796 GGCCTGTTCGTTGCTGTTTG 60.595 55.000 0.00 0.00 0.00 2.93
2706 2818 0.027455 TTCGTTGCTGTTTGCTGTCG 59.973 50.000 0.00 0.00 43.37 4.35
2771 2883 1.408822 GGTGGATTCCTGATGGACACC 60.409 57.143 3.95 7.33 44.43 4.16
2772 2884 1.281867 GTGGATTCCTGATGGACACCA 59.718 52.381 3.95 0.00 43.06 4.17
3011 3160 0.448990 CAGACATGAACATGGTGCGG 59.551 55.000 17.25 5.43 42.91 5.69
3047 3196 1.528586 CTCAACAAGTGCGAAGGTGAG 59.471 52.381 0.00 0.00 0.00 3.51
3061 3211 1.681486 GGTGAGGAGCTAGGCTGGAC 61.681 65.000 0.43 0.00 39.88 4.02
3071 3221 2.338500 CTAGGCTGGACGTTGTTCTTC 58.662 52.381 0.00 0.00 0.00 2.87
3084 3235 0.169009 GTTCTTCGTCCTGCCATTGC 59.831 55.000 0.00 0.00 38.26 3.56
3225 3380 0.824759 GTATGAGGACCTCGGCAGTT 59.175 55.000 16.81 0.34 32.35 3.16
3230 3385 1.275573 GAGGACCTCGGCAGTTACTTT 59.724 52.381 5.55 0.00 0.00 2.66
3279 3434 1.635663 CGCCATCTTCAACCACGACC 61.636 60.000 0.00 0.00 0.00 4.79
3347 3502 4.019411 TCCATTCCAGCACTTCATTACTCA 60.019 41.667 0.00 0.00 0.00 3.41
3351 3506 5.675684 TCCAGCACTTCATTACTCATACA 57.324 39.130 0.00 0.00 0.00 2.29
3571 3739 0.590195 CGCATTTATCTGGCTGGAGC 59.410 55.000 0.00 0.00 41.14 4.70
3744 3924 1.457346 GTTCATCTCTGGCTGGGTTG 58.543 55.000 0.00 0.00 0.00 3.77
3761 3941 0.040157 TTGCTTGATGCTGCGTTGTC 60.040 50.000 0.00 0.00 43.37 3.18
3779 3959 5.390040 CGTTGTCGAAATGTGTTAATGCCTA 60.390 40.000 0.00 0.00 39.71 3.93
3861 4041 5.672194 ACAGTGGGGTAGATAAATTCCATCT 59.328 40.000 7.46 7.46 36.68 2.90
3938 4121 2.352617 GGAAATTGCACAAATGGAGCGA 60.353 45.455 0.00 0.00 0.00 4.93
3960 4144 5.177511 CGAGCTCTCTGTTGTTGTTTTATCA 59.822 40.000 12.85 0.00 0.00 2.15
4001 4185 4.297299 TGTTTGTACTTCGTCGAAGAGT 57.703 40.909 35.22 20.75 41.71 3.24
4088 4272 3.393278 ACCTTGGTGTTGGTATGTACTGT 59.607 43.478 0.00 0.00 34.36 3.55
4147 4331 5.778241 TGTATCTACCGTGTGGATAATGGAT 59.222 40.000 10.23 0.00 37.65 3.41
4148 4332 6.949463 TGTATCTACCGTGTGGATAATGGATA 59.051 38.462 10.23 0.00 37.65 2.59
4149 4333 6.928348 ATCTACCGTGTGGATAATGGATAA 57.072 37.500 1.96 0.00 39.21 1.75
4153 4341 4.708868 CGTGTGGATAATGGATAACACG 57.291 45.455 11.13 11.13 45.08 4.49
4188 4376 0.618458 AGACATGGGTAACACGGCAT 59.382 50.000 0.00 0.00 39.74 4.40
4196 4384 1.609555 GGTAACACGGCATTGGTGAAA 59.390 47.619 0.00 0.00 38.73 2.69
4205 4393 3.798337 CGGCATTGGTGAAATTTAGATGC 59.202 43.478 11.90 11.90 38.08 3.91
4206 4394 4.440525 CGGCATTGGTGAAATTTAGATGCT 60.441 41.667 16.40 0.00 38.65 3.79
4207 4395 5.422145 GGCATTGGTGAAATTTAGATGCTT 58.578 37.500 16.40 0.00 38.65 3.91
4208 4396 5.521372 GGCATTGGTGAAATTTAGATGCTTC 59.479 40.000 16.40 0.00 38.65 3.86
4225 4417 5.881923 TGCTTCCTAGTTATTTCGGGTAT 57.118 39.130 0.00 0.00 0.00 2.73
4229 7619 6.202379 GCTTCCTAGTTATTTCGGGTATTGTC 59.798 42.308 0.00 0.00 0.00 3.18
4260 7650 5.182570 CCATGCACTATTAGATCATGGTTGG 59.817 44.000 24.51 12.46 45.46 3.77
4282 7672 4.436584 GGCACAACTCGATCAAAATCTGAG 60.437 45.833 0.00 0.00 37.52 3.35
4313 7710 6.016777 ACAAGGAAAACTCTTCTGCTTATGTG 60.017 38.462 0.00 0.00 0.00 3.21
4361 7758 4.215399 TCCGTTCAAATTTCTGGTGTGATC 59.785 41.667 0.00 0.00 0.00 2.92
4368 7765 5.808042 AATTTCTGGTGTGATCGATTCTG 57.192 39.130 0.00 0.00 0.00 3.02
4452 7853 0.951558 AGTGCTTGGTTTGCGTAAGG 59.048 50.000 0.00 0.00 38.28 2.69
4542 8045 2.385803 TCGTACCTTGAGATCCTTCCC 58.614 52.381 0.00 0.00 0.00 3.97
4550 8053 0.462759 GAGATCCTTCCCTGTTGGCG 60.463 60.000 0.00 0.00 0.00 5.69
4585 8090 5.181748 CCACAAGACCTAGATTTCTCCTTG 58.818 45.833 0.00 0.00 36.54 3.61
4591 8096 3.712218 ACCTAGATTTCTCCTTGGTAGCC 59.288 47.826 0.00 0.00 37.85 3.93
4592 8097 3.970640 CCTAGATTTCTCCTTGGTAGCCT 59.029 47.826 0.00 0.00 0.00 4.58
4601 8106 1.457346 CTTGGTAGCCTCCTTGCAAG 58.543 55.000 19.93 19.93 0.00 4.01
4671 8184 3.446799 GCAAACACAATGCAGAACAGAA 58.553 40.909 0.00 0.00 43.29 3.02
4672 8185 3.243643 GCAAACACAATGCAGAACAGAAC 59.756 43.478 0.00 0.00 43.29 3.01
4673 8186 4.422840 CAAACACAATGCAGAACAGAACA 58.577 39.130 0.00 0.00 0.00 3.18
4674 8187 3.976793 ACACAATGCAGAACAGAACAG 57.023 42.857 0.00 0.00 0.00 3.16
4675 8188 3.544684 ACACAATGCAGAACAGAACAGA 58.455 40.909 0.00 0.00 0.00 3.41
4676 8189 4.139786 ACACAATGCAGAACAGAACAGAT 58.860 39.130 0.00 0.00 0.00 2.90
4677 8190 5.308014 ACACAATGCAGAACAGAACAGATA 58.692 37.500 0.00 0.00 0.00 1.98
4678 8191 5.180117 ACACAATGCAGAACAGAACAGATAC 59.820 40.000 0.00 0.00 0.00 2.24
4679 8192 5.179929 CACAATGCAGAACAGAACAGATACA 59.820 40.000 0.00 0.00 0.00 2.29
4719 8232 2.086869 GTGCAGATGGCTTAAAGCAGA 58.913 47.619 0.00 0.00 44.75 4.26
4760 8273 4.618227 CGCTGGTAATTTTTCTTCCTTGGG 60.618 45.833 0.00 0.00 0.00 4.12
4779 8296 1.405526 GGAAGGCGCACACTAGAATCA 60.406 52.381 10.83 0.00 0.00 2.57
4869 8387 1.665916 GAACTCGCAGCTGCAGACA 60.666 57.895 36.03 16.73 42.21 3.41
4870 8388 1.224069 GAACTCGCAGCTGCAGACAA 61.224 55.000 36.03 15.61 42.21 3.18
4871 8389 0.604780 AACTCGCAGCTGCAGACAAT 60.605 50.000 36.03 15.29 42.21 2.71
4872 8390 0.604780 ACTCGCAGCTGCAGACAATT 60.605 50.000 36.03 14.19 42.21 2.32
4873 8391 0.096628 CTCGCAGCTGCAGACAATTC 59.903 55.000 36.03 5.81 42.21 2.17
4874 8392 1.136147 CGCAGCTGCAGACAATTCC 59.864 57.895 36.03 5.05 42.21 3.01
4875 8393 1.136147 GCAGCTGCAGACAATTCCG 59.864 57.895 33.36 0.00 41.59 4.30
4876 8394 1.300971 GCAGCTGCAGACAATTCCGA 61.301 55.000 33.36 0.00 41.59 4.55
4877 8395 1.159285 CAGCTGCAGACAATTCCGAA 58.841 50.000 20.43 0.00 0.00 4.30
4878 8396 1.536766 CAGCTGCAGACAATTCCGAAA 59.463 47.619 20.43 0.00 0.00 3.46
4879 8397 1.808945 AGCTGCAGACAATTCCGAAAG 59.191 47.619 20.43 0.00 0.00 2.62
4891 8409 4.268687 CGAAAGGCGCTGAAGTCT 57.731 55.556 7.64 0.00 0.00 3.24
4892 8410 1.784062 CGAAAGGCGCTGAAGTCTG 59.216 57.895 7.64 0.00 0.00 3.51
4893 8411 0.667487 CGAAAGGCGCTGAAGTCTGA 60.667 55.000 7.64 0.00 0.00 3.27
4894 8412 1.512926 GAAAGGCGCTGAAGTCTGAA 58.487 50.000 7.64 0.00 0.00 3.02
4895 8413 1.195674 GAAAGGCGCTGAAGTCTGAAC 59.804 52.381 7.64 0.00 0.00 3.18
4896 8414 0.394565 AAGGCGCTGAAGTCTGAACT 59.605 50.000 7.64 0.00 37.32 3.01
4897 8415 0.320247 AGGCGCTGAAGTCTGAACTG 60.320 55.000 7.64 0.00 35.36 3.16
4898 8416 1.294659 GGCGCTGAAGTCTGAACTGG 61.295 60.000 7.64 0.00 35.36 4.00
4899 8417 1.294659 GCGCTGAAGTCTGAACTGGG 61.295 60.000 0.00 0.00 35.36 4.45
4900 8418 0.034059 CGCTGAAGTCTGAACTGGGT 59.966 55.000 0.00 0.00 35.36 4.51
4901 8419 1.541233 CGCTGAAGTCTGAACTGGGTT 60.541 52.381 0.00 0.00 35.36 4.11
4902 8420 2.147150 GCTGAAGTCTGAACTGGGTTC 58.853 52.381 3.75 3.75 42.26 3.62
4903 8421 2.224402 GCTGAAGTCTGAACTGGGTTCT 60.224 50.000 10.98 0.00 42.39 3.01
4904 8422 3.397482 CTGAAGTCTGAACTGGGTTCTG 58.603 50.000 10.98 10.38 42.39 3.02
4905 8423 3.038280 TGAAGTCTGAACTGGGTTCTGA 58.962 45.455 13.29 13.29 44.14 3.27
4906 8424 3.454447 TGAAGTCTGAACTGGGTTCTGAA 59.546 43.478 17.09 4.34 46.35 3.02
4907 8425 3.477210 AGTCTGAACTGGGTTCTGAAC 57.523 47.619 12.05 12.05 46.35 3.18
4908 8426 3.041946 AGTCTGAACTGGGTTCTGAACT 58.958 45.455 19.05 14.15 46.35 3.01
4909 8427 3.070302 AGTCTGAACTGGGTTCTGAACTC 59.930 47.826 19.05 16.41 46.35 3.01
4910 8428 3.070302 GTCTGAACTGGGTTCTGAACTCT 59.930 47.826 20.25 1.15 46.35 3.24
4911 8429 3.322254 TCTGAACTGGGTTCTGAACTCTC 59.678 47.826 20.25 10.84 43.68 3.20
4912 8430 3.038280 TGAACTGGGTTCTGAACTCTCA 58.962 45.455 20.25 13.14 42.39 3.27
4913 8431 3.454447 TGAACTGGGTTCTGAACTCTCAA 59.546 43.478 20.25 0.64 42.39 3.02
4914 8432 3.477210 ACTGGGTTCTGAACTCTCAAC 57.523 47.619 20.25 3.19 31.48 3.18
4915 8433 3.041946 ACTGGGTTCTGAACTCTCAACT 58.958 45.455 20.25 3.61 31.48 3.16
4916 8434 3.070302 ACTGGGTTCTGAACTCTCAACTC 59.930 47.826 20.25 1.84 31.48 3.01
4917 8435 3.309296 TGGGTTCTGAACTCTCAACTCT 58.691 45.455 20.25 0.00 31.48 3.24
4918 8436 3.322254 TGGGTTCTGAACTCTCAACTCTC 59.678 47.826 20.25 0.49 31.48 3.20
4919 8437 3.306433 GGGTTCTGAACTCTCAACTCTCC 60.306 52.174 19.05 5.16 0.00 3.71
4920 8438 3.322254 GGTTCTGAACTCTCAACTCTCCA 59.678 47.826 19.05 0.00 0.00 3.86
4921 8439 4.020662 GGTTCTGAACTCTCAACTCTCCAT 60.021 45.833 19.05 0.00 0.00 3.41
4922 8440 5.167845 GTTCTGAACTCTCAACTCTCCATC 58.832 45.833 13.13 0.00 0.00 3.51
4923 8441 4.671831 TCTGAACTCTCAACTCTCCATCT 58.328 43.478 0.00 0.00 0.00 2.90
4924 8442 4.462132 TCTGAACTCTCAACTCTCCATCTG 59.538 45.833 0.00 0.00 0.00 2.90
4925 8443 4.155709 TGAACTCTCAACTCTCCATCTGT 58.844 43.478 0.00 0.00 0.00 3.41
4926 8444 4.021632 TGAACTCTCAACTCTCCATCTGTG 60.022 45.833 0.00 0.00 0.00 3.66
4927 8445 2.233431 ACTCTCAACTCTCCATCTGTGC 59.767 50.000 0.00 0.00 0.00 4.57
4928 8446 2.496871 CTCTCAACTCTCCATCTGTGCT 59.503 50.000 0.00 0.00 0.00 4.40
4929 8447 2.495270 TCTCAACTCTCCATCTGTGCTC 59.505 50.000 0.00 0.00 0.00 4.26
4930 8448 2.496871 CTCAACTCTCCATCTGTGCTCT 59.503 50.000 0.00 0.00 0.00 4.09
4931 8449 2.233186 TCAACTCTCCATCTGTGCTCTG 59.767 50.000 0.00 0.00 0.00 3.35
4932 8450 2.228545 ACTCTCCATCTGTGCTCTGA 57.771 50.000 0.00 0.00 0.00 3.27
4933 8451 2.533916 ACTCTCCATCTGTGCTCTGAA 58.466 47.619 0.00 0.00 0.00 3.02
4934 8452 2.233431 ACTCTCCATCTGTGCTCTGAAC 59.767 50.000 0.00 0.00 0.00 3.18
4935 8453 2.496871 CTCTCCATCTGTGCTCTGAACT 59.503 50.000 0.00 0.00 0.00 3.01
4936 8454 3.698539 CTCTCCATCTGTGCTCTGAACTA 59.301 47.826 0.00 0.00 0.00 2.24
4937 8455 3.698539 TCTCCATCTGTGCTCTGAACTAG 59.301 47.826 0.00 0.00 0.00 2.57
4938 8456 2.762887 TCCATCTGTGCTCTGAACTAGG 59.237 50.000 0.00 1.29 0.00 3.02
4939 8457 2.548875 CATCTGTGCTCTGAACTAGGC 58.451 52.381 0.00 0.00 0.00 3.93
4940 8458 1.930251 TCTGTGCTCTGAACTAGGCT 58.070 50.000 0.00 0.00 0.00 4.58
4941 8459 2.251818 TCTGTGCTCTGAACTAGGCTT 58.748 47.619 0.00 0.00 0.00 4.35
4942 8460 2.028658 TCTGTGCTCTGAACTAGGCTTG 60.029 50.000 0.00 0.00 0.00 4.01
4943 8461 1.002430 TGTGCTCTGAACTAGGCTTGG 59.998 52.381 0.00 0.00 0.00 3.61
4944 8462 0.036010 TGCTCTGAACTAGGCTTGGC 60.036 55.000 0.00 0.00 0.00 4.52
4945 8463 0.036010 GCTCTGAACTAGGCTTGGCA 60.036 55.000 0.00 0.00 0.00 4.92
4946 8464 1.611673 GCTCTGAACTAGGCTTGGCAA 60.612 52.381 0.00 0.00 0.00 4.52
4947 8465 2.943199 GCTCTGAACTAGGCTTGGCAAT 60.943 50.000 0.00 0.00 0.00 3.56
4948 8466 3.350833 CTCTGAACTAGGCTTGGCAATT 58.649 45.455 0.00 0.00 0.00 2.32
4949 8467 3.347216 TCTGAACTAGGCTTGGCAATTC 58.653 45.455 0.00 0.92 0.00 2.17
4950 8468 2.424956 CTGAACTAGGCTTGGCAATTCC 59.575 50.000 0.00 5.43 0.00 3.01
4951 8469 1.401905 GAACTAGGCTTGGCAATTCCG 59.598 52.381 0.00 0.00 37.80 4.30
4952 8470 0.394352 ACTAGGCTTGGCAATTCCGG 60.394 55.000 0.00 0.00 37.80 5.14
4953 8471 0.107214 CTAGGCTTGGCAATTCCGGA 60.107 55.000 0.00 0.00 37.80 5.14
4954 8472 0.329931 TAGGCTTGGCAATTCCGGAA 59.670 50.000 21.37 21.37 37.80 4.30
4955 8473 0.967380 AGGCTTGGCAATTCCGGAAG 60.967 55.000 23.47 11.11 37.80 3.46
4956 8474 0.965363 GGCTTGGCAATTCCGGAAGA 60.965 55.000 23.47 0.00 37.80 2.87
4957 8475 1.106285 GCTTGGCAATTCCGGAAGAT 58.894 50.000 23.47 11.27 37.80 2.40
4958 8476 1.202336 GCTTGGCAATTCCGGAAGATG 60.202 52.381 23.47 22.77 37.80 2.90
4959 8477 0.817013 TTGGCAATTCCGGAAGATGC 59.183 50.000 33.62 33.62 37.80 3.91
4960 8478 0.323269 TGGCAATTCCGGAAGATGCA 60.323 50.000 37.75 27.67 38.23 3.96
4961 8479 0.817013 GGCAATTCCGGAAGATGCAA 59.183 50.000 37.75 14.64 38.23 4.08
4962 8480 1.204467 GGCAATTCCGGAAGATGCAAA 59.796 47.619 37.75 13.97 38.23 3.68
4963 8481 2.262211 GCAATTCCGGAAGATGCAAAC 58.738 47.619 35.09 17.32 37.18 2.93
4964 8482 2.094545 GCAATTCCGGAAGATGCAAACT 60.095 45.455 35.09 12.79 37.18 2.66
4965 8483 3.614870 GCAATTCCGGAAGATGCAAACTT 60.615 43.478 35.09 17.20 37.18 2.66
4966 8484 4.380444 GCAATTCCGGAAGATGCAAACTTA 60.380 41.667 35.09 9.10 37.18 2.24
4967 8485 5.679638 GCAATTCCGGAAGATGCAAACTTAT 60.680 40.000 35.09 11.51 37.18 1.73
4968 8486 5.757850 ATTCCGGAAGATGCAAACTTATC 57.242 39.130 23.47 5.19 0.00 1.75
4969 8487 4.214986 TCCGGAAGATGCAAACTTATCA 57.785 40.909 0.00 0.00 0.00 2.15
4970 8488 3.938963 TCCGGAAGATGCAAACTTATCAC 59.061 43.478 0.00 0.00 0.00 3.06
4971 8489 3.689161 CCGGAAGATGCAAACTTATCACA 59.311 43.478 0.00 0.00 0.00 3.58
4972 8490 4.437390 CCGGAAGATGCAAACTTATCACAC 60.437 45.833 0.00 0.00 0.00 3.82
4973 8491 4.437390 CGGAAGATGCAAACTTATCACACC 60.437 45.833 9.02 5.28 0.00 4.16
4974 8492 4.458989 GGAAGATGCAAACTTATCACACCA 59.541 41.667 9.02 0.00 0.00 4.17
4975 8493 5.048083 GGAAGATGCAAACTTATCACACCAA 60.048 40.000 9.02 0.00 0.00 3.67
4976 8494 6.403866 AAGATGCAAACTTATCACACCAAA 57.596 33.333 7.57 0.00 0.00 3.28
4977 8495 6.594788 AGATGCAAACTTATCACACCAAAT 57.405 33.333 0.00 0.00 0.00 2.32
4978 8496 6.624423 AGATGCAAACTTATCACACCAAATC 58.376 36.000 0.00 0.00 0.00 2.17
4979 8497 4.793071 TGCAAACTTATCACACCAAATCG 58.207 39.130 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 7.701539 AGCATTATGTCATGTTTTCCACTTA 57.298 32.000 0.00 0.00 0.00 2.24
15 16 6.594788 AGCATTATGTCATGTTTTCCACTT 57.405 33.333 0.00 0.00 0.00 3.16
43 45 3.755378 GTCCAATGAAGCTCTGTGTTCAT 59.245 43.478 0.00 0.00 43.71 2.57
69 76 5.761726 GTGATATCCAAGTCTGCATCATTGA 59.238 40.000 0.00 0.00 0.00 2.57
80 87 8.268850 ACACATGTTTAAGTGATATCCAAGTC 57.731 34.615 0.00 0.00 39.03 3.01
99 108 2.153645 ACCGCATGCCATATACACATG 58.846 47.619 13.15 6.96 43.21 3.21
107 116 1.398739 CAACGTTTACCGCATGCCATA 59.601 47.619 13.15 1.32 41.42 2.74
110 119 0.450184 ATCAACGTTTACCGCATGCC 59.550 50.000 13.15 0.00 41.42 4.40
120 129 3.056891 CCAAATACCCTGCATCAACGTTT 60.057 43.478 0.00 0.00 0.00 3.60
126 135 2.308570 AGTGTCCAAATACCCTGCATCA 59.691 45.455 0.00 0.00 0.00 3.07
163 174 2.256174 CAATCAGCGCATTGTTTCCTG 58.744 47.619 11.47 0.00 0.00 3.86
185 196 5.045505 AGGGGAAAGAACAGGAAATAGAGAC 60.046 44.000 0.00 0.00 0.00 3.36
212 223 5.106277 GGTAGGTAATTCTGGCAGTTGTTTC 60.106 44.000 15.27 5.98 0.00 2.78
215 226 3.587506 AGGTAGGTAATTCTGGCAGTTGT 59.412 43.478 15.27 3.18 0.00 3.32
222 233 7.419711 TCTGAAACTAGGTAGGTAATTCTGG 57.580 40.000 0.00 0.00 0.00 3.86
235 246 3.261897 TGCCTCCTTCTTCTGAAACTAGG 59.738 47.826 0.00 6.01 32.75 3.02
236 247 4.221703 TCTGCCTCCTTCTTCTGAAACTAG 59.778 45.833 0.00 0.00 0.00 2.57
238 249 2.975489 TCTGCCTCCTTCTTCTGAAACT 59.025 45.455 0.00 0.00 0.00 2.66
239 250 3.409026 TCTGCCTCCTTCTTCTGAAAC 57.591 47.619 0.00 0.00 0.00 2.78
240 251 4.647564 ATTCTGCCTCCTTCTTCTGAAA 57.352 40.909 0.00 0.00 0.00 2.69
241 252 4.647564 AATTCTGCCTCCTTCTTCTGAA 57.352 40.909 0.00 0.00 0.00 3.02
242 253 4.080863 GGTAATTCTGCCTCCTTCTTCTGA 60.081 45.833 0.00 0.00 0.00 3.27
243 254 4.080638 AGGTAATTCTGCCTCCTTCTTCTG 60.081 45.833 0.00 0.00 30.56 3.02
244 255 4.080638 CAGGTAATTCTGCCTCCTTCTTCT 60.081 45.833 0.00 0.00 35.03 2.85
245 256 4.080863 TCAGGTAATTCTGCCTCCTTCTTC 60.081 45.833 0.00 0.00 35.03 2.87
246 257 3.846588 TCAGGTAATTCTGCCTCCTTCTT 59.153 43.478 0.00 0.00 35.03 2.52
252 269 3.209410 CATGGTCAGGTAATTCTGCCTC 58.791 50.000 0.00 0.00 35.03 4.70
283 300 0.753262 AAGCTATACCTGCGGTGGAG 59.247 55.000 10.01 7.96 36.19 3.86
285 302 0.464036 TCAAGCTATACCTGCGGTGG 59.536 55.000 10.01 0.00 36.19 4.61
374 391 0.036388 TCAGGCGCCCAAGTAAGAAG 60.036 55.000 26.15 0.14 0.00 2.85
376 393 0.107703 CATCAGGCGCCCAAGTAAGA 60.108 55.000 26.15 10.31 0.00 2.10
377 394 1.097547 CCATCAGGCGCCCAAGTAAG 61.098 60.000 26.15 6.83 0.00 2.34
384 401 0.250901 ACAATATCCATCAGGCGCCC 60.251 55.000 26.15 5.07 33.74 6.13
397 414 1.949525 GCCCGAGCATGTTGACAATAT 59.050 47.619 0.00 0.00 39.53 1.28
398 415 1.378531 GCCCGAGCATGTTGACAATA 58.621 50.000 0.00 0.00 39.53 1.90
414 431 0.738975 GTCTCCAATTTTAGGCGCCC 59.261 55.000 26.15 5.07 0.00 6.13
449 466 0.465097 ATACATGCACTGCTGGAGCC 60.465 55.000 1.98 0.00 41.18 4.70
502 519 5.702670 CACAATATATGGAGCTTGATCCGTT 59.297 40.000 4.90 0.00 42.77 4.44
527 544 7.661127 AACAGTGTTTCGTGTAGCATTTATA 57.339 32.000 1.64 0.00 0.00 0.98
567 588 3.621558 GAATCAAGGGTTACAGAAGGGG 58.378 50.000 0.00 0.00 0.00 4.79
605 631 7.221452 GCAGCAACAAATTTACATAGAATCTGG 59.779 37.037 0.00 0.00 0.00 3.86
706 732 0.465705 GGCAGTGTCTAGCAGCCATA 59.534 55.000 10.51 0.00 44.59 2.74
708 734 2.665000 GGCAGTGTCTAGCAGCCA 59.335 61.111 10.51 0.00 44.59 4.75
709 735 1.743252 GTGGCAGTGTCTAGCAGCC 60.743 63.158 0.00 0.00 45.41 4.85
715 741 3.369471 GCAGGATTAAGTGGCAGTGTCTA 60.369 47.826 0.00 0.00 0.00 2.59
716 742 2.616510 GCAGGATTAAGTGGCAGTGTCT 60.617 50.000 0.00 0.00 0.00 3.41
717 743 1.740025 GCAGGATTAAGTGGCAGTGTC 59.260 52.381 0.00 0.00 0.00 3.67
718 744 1.073763 TGCAGGATTAAGTGGCAGTGT 59.926 47.619 0.00 0.00 0.00 3.55
719 745 1.825090 TGCAGGATTAAGTGGCAGTG 58.175 50.000 0.00 0.00 0.00 3.66
720 746 2.814805 ATGCAGGATTAAGTGGCAGT 57.185 45.000 0.00 0.00 37.96 4.40
721 747 4.460948 AAAATGCAGGATTAAGTGGCAG 57.539 40.909 0.00 0.00 37.96 4.85
723 749 4.819769 TGAAAAATGCAGGATTAAGTGGC 58.180 39.130 0.00 0.00 0.00 5.01
739 779 2.109834 TCTGCAAGAGGGGGATGAAAAA 59.890 45.455 0.00 0.00 38.67 1.94
832 877 1.153369 CCGCGACATCCATTCAGGT 60.153 57.895 8.23 0.00 39.02 4.00
833 878 2.537560 GCCGCGACATCCATTCAGG 61.538 63.158 8.23 0.00 39.47 3.86
834 879 2.874694 CGCCGCGACATCCATTCAG 61.875 63.158 8.23 0.00 0.00 3.02
835 880 2.889988 CGCCGCGACATCCATTCA 60.890 61.111 8.23 0.00 0.00 2.57
836 881 3.640000 CCGCCGCGACATCCATTC 61.640 66.667 15.93 0.00 0.00 2.67
854 899 3.660111 GTTCACTGGCGTGTGGGC 61.660 66.667 9.90 1.57 41.89 5.36
855 900 2.978010 GGTTCACTGGCGTGTGGG 60.978 66.667 9.90 0.00 41.89 4.61
856 901 3.345808 CGGTTCACTGGCGTGTGG 61.346 66.667 9.90 0.00 41.89 4.17
857 902 3.345808 CCGGTTCACTGGCGTGTG 61.346 66.667 0.00 6.72 41.89 3.82
900 949 4.342862 TGGGAGAACTGAAGCATATAGC 57.657 45.455 0.00 0.00 46.19 2.97
901 950 5.059833 GGTTGGGAGAACTGAAGCATATAG 58.940 45.833 0.00 0.00 0.00 1.31
902 951 4.473196 TGGTTGGGAGAACTGAAGCATATA 59.527 41.667 0.00 0.00 0.00 0.86
903 952 3.266772 TGGTTGGGAGAACTGAAGCATAT 59.733 43.478 0.00 0.00 0.00 1.78
904 953 2.642311 TGGTTGGGAGAACTGAAGCATA 59.358 45.455 0.00 0.00 0.00 3.14
905 954 1.425066 TGGTTGGGAGAACTGAAGCAT 59.575 47.619 0.00 0.00 0.00 3.79
922 971 4.747605 CGGGTTTCGAAAATTGAAAATGGT 59.252 37.500 13.10 0.00 42.43 3.55
933 982 0.810823 AGCGACACGGGTTTCGAAAA 60.811 50.000 13.10 0.00 42.43 2.29
982 1031 2.525629 GGGGGAGGAGGAGCTAGC 60.526 72.222 6.62 6.62 0.00 3.42
1083 1140 4.383861 TCTCTGCGGCTGTGGCTG 62.384 66.667 0.00 0.00 46.87 4.85
1120 1177 4.874528 GCTTCCTCAGCTCCATCC 57.125 61.111 0.00 0.00 46.27 3.51
1448 1508 3.456365 GAGCAGCGGGAGAGCAGA 61.456 66.667 0.00 0.00 40.15 4.26
1449 1509 3.429080 GAGAGCAGCGGGAGAGCAG 62.429 68.421 0.00 0.00 40.15 4.24
1467 1527 1.633561 CACTCACGCATACACCAGAG 58.366 55.000 0.00 0.00 0.00 3.35
1483 1543 0.670546 CAAATCGACAGACCCGCACT 60.671 55.000 0.00 0.00 0.00 4.40
1582 1642 0.373370 CAGAACCACACACACACACG 59.627 55.000 0.00 0.00 0.00 4.49
1588 1648 2.364632 CAAGTTCCAGAACCACACACA 58.635 47.619 6.91 0.00 42.06 3.72
1613 1674 2.247699 TTCCCTCCCTCTGATTCGAA 57.752 50.000 0.00 0.00 0.00 3.71
1617 1678 2.174424 GCTCAATTCCCTCCCTCTGATT 59.826 50.000 0.00 0.00 0.00 2.57
1621 1682 1.563410 CAAGCTCAATTCCCTCCCTCT 59.437 52.381 0.00 0.00 0.00 3.69
1636 1697 3.151554 TCATCACACAAATGCTCAAGCT 58.848 40.909 3.32 0.00 42.66 3.74
1691 1764 2.819608 GGCAGCAGAATTCAAACCACTA 59.180 45.455 8.44 0.00 0.00 2.74
1693 1766 1.666888 CGGCAGCAGAATTCAAACCAC 60.667 52.381 8.44 0.00 0.00 4.16
1712 1785 1.920574 CAGTACCAAGCTCGATTCACG 59.079 52.381 0.00 0.00 44.09 4.35
1797 1870 2.806019 CGAATCATCTCCAAGCTCCAGG 60.806 54.545 0.00 0.00 0.00 4.45
1813 1886 3.603770 CCAACGCAACAGAAATTCGAATC 59.396 43.478 11.83 0.22 0.00 2.52
1892 1965 3.797039 CGACTCTGCATTCCTAATTGGA 58.203 45.455 0.00 0.00 44.51 3.53
1924 1997 5.508825 CCCGAATCAATTCAAACACAGGAAA 60.509 40.000 3.81 0.00 36.61 3.13
1928 2001 4.503741 ACCCGAATCAATTCAAACACAG 57.496 40.909 3.81 0.00 36.61 3.66
1952 2025 4.159321 TGCTTCAAAATCACCAACAGAACA 59.841 37.500 0.00 0.00 0.00 3.18
1959 2032 2.036217 CCTGCTGCTTCAAAATCACCAA 59.964 45.455 0.00 0.00 0.00 3.67
1965 2038 2.227388 CGAAGACCTGCTGCTTCAAAAT 59.773 45.455 0.00 0.00 40.31 1.82
1977 2050 0.530744 TGGACCGAATCGAAGACCTG 59.469 55.000 3.36 0.00 42.51 4.00
1982 2055 1.413767 CGCACTGGACCGAATCGAAG 61.414 60.000 3.36 0.00 0.00 3.79
2015 2088 1.673033 CCTAAACTGGGACTGCAGACG 60.673 57.143 23.35 4.27 0.00 4.18
2018 2091 1.072331 ACACCTAAACTGGGACTGCAG 59.928 52.381 13.48 13.48 0.00 4.41
2021 2094 3.864921 GCAGTACACCTAAACTGGGACTG 60.865 52.174 0.00 0.00 42.72 3.51
2026 2099 3.067106 CACAGCAGTACACCTAAACTGG 58.933 50.000 0.00 0.00 42.72 4.00
2091 2164 3.963383 ACATTGGTCGACAAACACTTC 57.037 42.857 18.91 0.00 43.46 3.01
2101 2174 4.377021 GTCAGGCATTATACATTGGTCGA 58.623 43.478 0.00 0.00 0.00 4.20
2102 2175 3.184379 CGTCAGGCATTATACATTGGTCG 59.816 47.826 0.00 0.00 0.00 4.79
2169 2253 0.746659 GCACAAAGCAGGAAACCAGT 59.253 50.000 0.00 0.00 44.79 4.00
2188 2280 5.817296 TGGATAACGAATTCCTGAATCACAG 59.183 40.000 0.00 0.00 45.36 3.66
2211 2303 4.473199 CAGCACAAATCACAGAACAGATG 58.527 43.478 0.00 0.00 0.00 2.90
2240 2332 2.215138 CGACGAGAGCATTCAGATTTCG 59.785 50.000 0.00 0.00 0.00 3.46
2252 2344 0.878961 ACCAAACAACCGACGAGAGC 60.879 55.000 0.00 0.00 0.00 4.09
2324 2417 2.493973 GAGAGCCTCAGCAGGTCG 59.506 66.667 0.00 0.00 42.74 4.79
2432 2525 1.823041 GAGCCTGAGCATCTTGGGC 60.823 63.158 0.00 0.00 42.73 5.36
2521 2614 1.134371 AGGAATAAGCTCAACGGAGGC 60.134 52.381 0.00 0.00 41.67 4.70
2523 2616 2.483889 GGGAGGAATAAGCTCAACGGAG 60.484 54.545 0.00 0.00 44.33 4.63
2529 2622 1.009552 TGGGAGGGAGGAATAAGCTCA 59.990 52.381 0.00 0.00 0.00 4.26
2530 2623 1.418264 GTGGGAGGGAGGAATAAGCTC 59.582 57.143 0.00 0.00 0.00 4.09
2531 2624 1.010170 AGTGGGAGGGAGGAATAAGCT 59.990 52.381 0.00 0.00 0.00 3.74
2532 2625 1.141858 CAGTGGGAGGGAGGAATAAGC 59.858 57.143 0.00 0.00 0.00 3.09
2533 2626 1.141858 GCAGTGGGAGGGAGGAATAAG 59.858 57.143 0.00 0.00 0.00 1.73
2535 2628 0.694444 GGCAGTGGGAGGGAGGAATA 60.694 60.000 0.00 0.00 0.00 1.75
2536 2629 2.003548 GGCAGTGGGAGGGAGGAAT 61.004 63.158 0.00 0.00 0.00 3.01
2537 2630 2.610859 GGCAGTGGGAGGGAGGAA 60.611 66.667 0.00 0.00 0.00 3.36
2553 2646 2.503375 GTACGTGTCGAGTGGCGG 60.503 66.667 0.00 0.00 41.33 6.13
2555 2648 0.728466 GTCAGTACGTGTCGAGTGGC 60.728 60.000 0.00 0.00 0.00 5.01
2575 2668 2.433318 GGACAGAGGAGCACGCAC 60.433 66.667 0.00 0.00 0.00 5.34
2601 2696 1.202417 ACGCATGGGTATCGTCTGAAG 60.202 52.381 14.60 0.00 0.00 3.02
2674 2770 1.074248 AACGAACAGGCCGGGAAAT 59.926 52.632 8.08 0.00 0.00 2.17
2676 2772 2.281208 CAACGAACAGGCCGGGAA 60.281 61.111 8.08 0.00 0.00 3.97
2700 2812 1.525619 GTCAGGTAAACACACGACAGC 59.474 52.381 0.00 0.00 0.00 4.40
2706 2818 1.263217 CCAAGCGTCAGGTAAACACAC 59.737 52.381 0.00 0.00 0.00 3.82
2810 2922 1.151943 ATCCAGGATCGGCCTCCAT 60.152 57.895 13.29 0.00 46.97 3.41
2988 3112 2.479049 GCACCATGTTCATGTCTGCATC 60.479 50.000 19.05 0.00 31.99 3.91
2989 3113 1.475280 GCACCATGTTCATGTCTGCAT 59.525 47.619 19.05 0.00 35.32 3.96
3047 3196 1.153549 CAACGTCCAGCCTAGCTCC 60.154 63.158 0.00 0.00 36.40 4.70
3061 3211 0.878523 TGGCAGGACGAAGAACAACG 60.879 55.000 0.00 0.00 0.00 4.10
3071 3221 3.803082 CACCGCAATGGCAGGACG 61.803 66.667 9.55 0.00 43.94 4.79
3084 3235 3.052036 CCAAATTCAGAAACAAGCACCG 58.948 45.455 0.00 0.00 0.00 4.94
3225 3380 3.265737 TCCAGCTTCCCATTGCTAAAGTA 59.734 43.478 0.00 0.00 37.81 2.24
3230 3385 3.048600 AGTATCCAGCTTCCCATTGCTA 58.951 45.455 0.00 0.00 37.81 3.49
3260 3415 1.635663 GGTCGTGGTTGAAGATGGCG 61.636 60.000 0.00 0.00 0.00 5.69
3289 3444 3.177997 ACAAACTTTTGACACATGGGC 57.822 42.857 8.69 0.00 40.55 5.36
3347 3502 5.489997 TCCTCATATCCAGGCAATCATGTAT 59.510 40.000 0.00 0.00 0.00 2.29
3351 3506 4.538891 TCATCCTCATATCCAGGCAATCAT 59.461 41.667 0.00 0.00 0.00 2.45
3571 3739 4.629200 GCAAAGACTCATGTCAGAACTAGG 59.371 45.833 0.00 0.00 45.20 3.02
3677 3854 0.038251 GCGTGATCCTGACAGACACA 60.038 55.000 19.26 8.77 0.00 3.72
3744 3924 1.510623 CGACAACGCAGCATCAAGC 60.511 57.895 0.00 0.00 46.19 4.01
3761 3941 9.864034 CTAAATACTAGGCATTAACACATTTCG 57.136 33.333 0.00 0.00 0.00 3.46
3779 3959 6.481644 GCTAGCATCAGAGCAAACTAAATACT 59.518 38.462 10.63 0.00 38.62 2.12
3874 4057 6.797995 CGCCGATTTAATTACTCTACTCTCTC 59.202 42.308 0.00 0.00 0.00 3.20
3938 4121 6.942532 TTGATAAAACAACAACAGAGAGCT 57.057 33.333 0.00 0.00 0.00 4.09
3960 4144 7.816995 ACAAACATACCGCATTAAACATTGATT 59.183 29.630 0.00 0.00 0.00 2.57
4088 4272 5.278758 GCCAACCAAGCAAACAGAGTAAATA 60.279 40.000 0.00 0.00 0.00 1.40
4147 4331 5.047590 TCTGAAGAACTCTAATGCCGTGTTA 60.048 40.000 0.00 0.00 0.00 2.41
4148 4332 3.997021 CTGAAGAACTCTAATGCCGTGTT 59.003 43.478 0.00 0.00 0.00 3.32
4149 4333 3.258372 TCTGAAGAACTCTAATGCCGTGT 59.742 43.478 0.00 0.00 0.00 4.49
4153 4341 4.574013 CCATGTCTGAAGAACTCTAATGCC 59.426 45.833 0.00 0.00 0.00 4.40
4188 4376 7.175104 ACTAGGAAGCATCTAAATTTCACCAA 58.825 34.615 0.00 0.00 0.00 3.67
4196 4384 7.661847 CCCGAAATAACTAGGAAGCATCTAAAT 59.338 37.037 0.00 0.00 0.00 1.40
4205 4393 6.704937 GGACAATACCCGAAATAACTAGGAAG 59.295 42.308 0.00 0.00 0.00 3.46
4206 4394 6.384886 AGGACAATACCCGAAATAACTAGGAA 59.615 38.462 0.00 0.00 0.00 3.36
4207 4395 5.901276 AGGACAATACCCGAAATAACTAGGA 59.099 40.000 0.00 0.00 0.00 2.94
4208 4396 6.170846 AGGACAATACCCGAAATAACTAGG 57.829 41.667 0.00 0.00 0.00 3.02
4225 4417 6.945435 TCTAATAGTGCATGGAAAAAGGACAA 59.055 34.615 0.00 0.00 0.00 3.18
4229 7619 7.572523 TGATCTAATAGTGCATGGAAAAAGG 57.427 36.000 0.00 0.00 0.00 3.11
4256 7646 3.347958 TTTTGATCGAGTTGTGCCAAC 57.652 42.857 9.31 9.31 0.00 3.77
4260 7650 4.389992 TCTCAGATTTTGATCGAGTTGTGC 59.610 41.667 0.00 0.00 34.68 4.57
4340 7737 4.084066 TCGATCACACCAGAAATTTGAACG 60.084 41.667 0.00 0.00 34.79 3.95
4353 7750 2.349886 GCAGAACAGAATCGATCACACC 59.650 50.000 0.00 0.00 0.00 4.16
4361 7758 6.865726 AGCTAGTATTATGCAGAACAGAATCG 59.134 38.462 0.00 0.00 39.41 3.34
4368 7765 7.064609 TGTTTCACAGCTAGTATTATGCAGAAC 59.935 37.037 0.00 0.00 0.00 3.01
4463 7864 3.842436 CTGTAAGTACTAAACCCCACCCT 59.158 47.826 0.00 0.00 0.00 4.34
4542 8045 1.994779 GGAAATGCATTTCGCCAACAG 59.005 47.619 34.37 0.00 45.37 3.16
4550 8053 3.259123 AGGTCTTGTGGGAAATGCATTTC 59.741 43.478 34.36 34.36 44.08 2.17
4601 8106 7.280205 CCATTCTACTGGTTAGATTTACACACC 59.720 40.741 0.00 0.00 36.65 4.16
4671 8184 4.067896 CTGCTTTCAGGTTGTGTATCTGT 58.932 43.478 0.00 0.00 36.68 3.41
4672 8185 4.318332 TCTGCTTTCAGGTTGTGTATCTG 58.682 43.478 0.00 0.00 40.69 2.90
4673 8186 4.623932 TCTGCTTTCAGGTTGTGTATCT 57.376 40.909 0.00 0.00 40.69 1.98
4674 8187 4.378874 GCTTCTGCTTTCAGGTTGTGTATC 60.379 45.833 0.00 0.00 40.69 2.24
4675 8188 3.503748 GCTTCTGCTTTCAGGTTGTGTAT 59.496 43.478 0.00 0.00 40.69 2.29
4676 8189 2.878406 GCTTCTGCTTTCAGGTTGTGTA 59.122 45.455 0.00 0.00 40.69 2.90
4677 8190 1.678101 GCTTCTGCTTTCAGGTTGTGT 59.322 47.619 0.00 0.00 40.69 3.72
4678 8191 1.677576 TGCTTCTGCTTTCAGGTTGTG 59.322 47.619 0.00 0.00 40.69 3.33
4679 8192 1.952296 CTGCTTCTGCTTTCAGGTTGT 59.048 47.619 0.00 0.00 40.69 3.32
4731 8244 7.562135 AGGAAGAAAAATTACCAGCGATACTA 58.438 34.615 0.00 0.00 0.00 1.82
4734 8247 6.094881 CCAAGGAAGAAAAATTACCAGCGATA 59.905 38.462 0.00 0.00 0.00 2.92
4738 8251 4.526650 TCCCAAGGAAGAAAAATTACCAGC 59.473 41.667 0.00 0.00 0.00 4.85
4760 8273 2.010145 TGATTCTAGTGTGCGCCTTC 57.990 50.000 4.18 0.00 0.00 3.46
4779 8296 1.315690 CGCATGAATGGCAGGAGATT 58.684 50.000 0.00 0.00 29.15 2.40
4869 8387 0.804989 CTTCAGCGCCTTTCGGAATT 59.195 50.000 2.29 0.00 38.94 2.17
4870 8388 0.321653 ACTTCAGCGCCTTTCGGAAT 60.322 50.000 2.29 0.00 38.94 3.01
4871 8389 0.949105 GACTTCAGCGCCTTTCGGAA 60.949 55.000 2.29 0.00 38.94 4.30
4872 8390 1.374252 GACTTCAGCGCCTTTCGGA 60.374 57.895 2.29 0.00 38.94 4.55
4873 8391 1.374758 AGACTTCAGCGCCTTTCGG 60.375 57.895 2.29 0.00 38.94 4.30
4874 8392 0.667487 TCAGACTTCAGCGCCTTTCG 60.667 55.000 2.29 0.00 42.12 3.46
4875 8393 1.195674 GTTCAGACTTCAGCGCCTTTC 59.804 52.381 2.29 0.00 0.00 2.62
4876 8394 1.202698 AGTTCAGACTTCAGCGCCTTT 60.203 47.619 2.29 0.00 29.87 3.11
4877 8395 0.394565 AGTTCAGACTTCAGCGCCTT 59.605 50.000 2.29 0.00 29.87 4.35
4878 8396 0.320247 CAGTTCAGACTTCAGCGCCT 60.320 55.000 2.29 0.00 32.54 5.52
4879 8397 1.294659 CCAGTTCAGACTTCAGCGCC 61.295 60.000 2.29 0.00 32.54 6.53
4880 8398 1.294659 CCCAGTTCAGACTTCAGCGC 61.295 60.000 0.00 0.00 32.54 5.92
4881 8399 0.034059 ACCCAGTTCAGACTTCAGCG 59.966 55.000 0.00 0.00 32.54 5.18
4882 8400 2.147150 GAACCCAGTTCAGACTTCAGC 58.853 52.381 2.65 0.00 41.62 4.26
4883 8401 3.070159 TCAGAACCCAGTTCAGACTTCAG 59.930 47.826 9.92 0.00 44.11 3.02
4884 8402 3.038280 TCAGAACCCAGTTCAGACTTCA 58.962 45.455 9.92 0.00 44.11 3.02
4885 8403 3.753294 TCAGAACCCAGTTCAGACTTC 57.247 47.619 9.92 0.00 44.11 3.01
4886 8404 3.456277 AGTTCAGAACCCAGTTCAGACTT 59.544 43.478 9.85 0.00 44.11 3.01
4887 8405 3.041946 AGTTCAGAACCCAGTTCAGACT 58.958 45.455 9.85 7.23 44.11 3.24
4888 8406 3.070302 AGAGTTCAGAACCCAGTTCAGAC 59.930 47.826 9.85 5.36 44.11 3.51
4889 8407 3.309296 AGAGTTCAGAACCCAGTTCAGA 58.691 45.455 9.85 4.55 44.11 3.27
4890 8408 3.070159 TGAGAGTTCAGAACCCAGTTCAG 59.930 47.826 9.85 2.20 44.11 3.02
4891 8409 3.038280 TGAGAGTTCAGAACCCAGTTCA 58.962 45.455 9.85 4.56 44.11 3.18
4892 8410 3.753294 TGAGAGTTCAGAACCCAGTTC 57.247 47.619 9.85 0.71 42.25 3.01
4893 8411 3.456277 AGTTGAGAGTTCAGAACCCAGTT 59.544 43.478 9.85 0.00 34.15 3.16
4894 8412 3.041946 AGTTGAGAGTTCAGAACCCAGT 58.958 45.455 9.85 0.00 34.15 4.00
4895 8413 3.323403 AGAGTTGAGAGTTCAGAACCCAG 59.677 47.826 9.85 0.00 34.15 4.45
4896 8414 3.309296 AGAGTTGAGAGTTCAGAACCCA 58.691 45.455 9.85 3.38 34.15 4.51
4897 8415 3.306433 GGAGAGTTGAGAGTTCAGAACCC 60.306 52.174 9.85 0.00 34.15 4.11
4898 8416 3.322254 TGGAGAGTTGAGAGTTCAGAACC 59.678 47.826 9.85 1.94 34.15 3.62
4899 8417 4.592485 TGGAGAGTTGAGAGTTCAGAAC 57.408 45.455 5.00 5.00 34.15 3.01
4900 8418 5.047448 CAGATGGAGAGTTGAGAGTTCAGAA 60.047 44.000 0.00 0.00 34.15 3.02
4901 8419 4.462132 CAGATGGAGAGTTGAGAGTTCAGA 59.538 45.833 0.00 0.00 34.15 3.27
4902 8420 4.220382 ACAGATGGAGAGTTGAGAGTTCAG 59.780 45.833 0.00 0.00 34.15 3.02
4903 8421 4.021632 CACAGATGGAGAGTTGAGAGTTCA 60.022 45.833 0.00 0.00 0.00 3.18
4904 8422 4.493547 CACAGATGGAGAGTTGAGAGTTC 58.506 47.826 0.00 0.00 0.00 3.01
4905 8423 3.306641 GCACAGATGGAGAGTTGAGAGTT 60.307 47.826 0.00 0.00 0.00 3.01
4906 8424 2.233431 GCACAGATGGAGAGTTGAGAGT 59.767 50.000 0.00 0.00 0.00 3.24
4907 8425 2.496871 AGCACAGATGGAGAGTTGAGAG 59.503 50.000 0.00 0.00 0.00 3.20
4908 8426 2.495270 GAGCACAGATGGAGAGTTGAGA 59.505 50.000 0.00 0.00 0.00 3.27
4909 8427 2.496871 AGAGCACAGATGGAGAGTTGAG 59.503 50.000 0.00 0.00 0.00 3.02
4910 8428 2.233186 CAGAGCACAGATGGAGAGTTGA 59.767 50.000 0.00 0.00 0.00 3.18
4911 8429 2.233186 TCAGAGCACAGATGGAGAGTTG 59.767 50.000 0.00 0.00 0.00 3.16
4912 8430 2.533916 TCAGAGCACAGATGGAGAGTT 58.466 47.619 0.00 0.00 0.00 3.01
4913 8431 2.228545 TCAGAGCACAGATGGAGAGT 57.771 50.000 0.00 0.00 0.00 3.24
4914 8432 2.496871 AGTTCAGAGCACAGATGGAGAG 59.503 50.000 0.00 0.00 0.00 3.20
4915 8433 2.533916 AGTTCAGAGCACAGATGGAGA 58.466 47.619 0.00 0.00 0.00 3.71
4916 8434 3.181477 CCTAGTTCAGAGCACAGATGGAG 60.181 52.174 0.00 0.00 0.00 3.86
4917 8435 2.762887 CCTAGTTCAGAGCACAGATGGA 59.237 50.000 0.00 0.00 0.00 3.41
4918 8436 2.741228 GCCTAGTTCAGAGCACAGATGG 60.741 54.545 0.00 0.00 0.00 3.51
4919 8437 2.168106 AGCCTAGTTCAGAGCACAGATG 59.832 50.000 0.00 0.00 0.00 2.90
4920 8438 2.465813 AGCCTAGTTCAGAGCACAGAT 58.534 47.619 0.00 0.00 0.00 2.90
4921 8439 1.930251 AGCCTAGTTCAGAGCACAGA 58.070 50.000 0.00 0.00 0.00 3.41
4922 8440 2.344950 CAAGCCTAGTTCAGAGCACAG 58.655 52.381 0.00 0.00 0.00 3.66
4923 8441 1.002430 CCAAGCCTAGTTCAGAGCACA 59.998 52.381 0.00 0.00 0.00 4.57
4924 8442 1.731720 CCAAGCCTAGTTCAGAGCAC 58.268 55.000 0.00 0.00 0.00 4.40
4925 8443 0.036010 GCCAAGCCTAGTTCAGAGCA 60.036 55.000 0.00 0.00 0.00 4.26
4926 8444 0.036010 TGCCAAGCCTAGTTCAGAGC 60.036 55.000 0.00 0.00 0.00 4.09
4927 8445 2.479566 TTGCCAAGCCTAGTTCAGAG 57.520 50.000 0.00 0.00 0.00 3.35
4928 8446 3.347216 GAATTGCCAAGCCTAGTTCAGA 58.653 45.455 0.00 0.00 0.00 3.27
4929 8447 2.424956 GGAATTGCCAAGCCTAGTTCAG 59.575 50.000 0.00 0.00 36.34 3.02
4930 8448 2.446435 GGAATTGCCAAGCCTAGTTCA 58.554 47.619 0.00 0.00 36.34 3.18
4931 8449 1.401905 CGGAATTGCCAAGCCTAGTTC 59.598 52.381 0.00 0.00 35.94 3.01
4932 8450 1.463674 CGGAATTGCCAAGCCTAGTT 58.536 50.000 0.00 0.00 35.94 2.24
4933 8451 0.394352 CCGGAATTGCCAAGCCTAGT 60.394 55.000 0.00 0.00 35.94 2.57
4934 8452 0.107214 TCCGGAATTGCCAAGCCTAG 60.107 55.000 0.00 0.00 35.94 3.02
4935 8453 0.329931 TTCCGGAATTGCCAAGCCTA 59.670 50.000 14.35 0.00 35.94 3.93
4936 8454 0.967380 CTTCCGGAATTGCCAAGCCT 60.967 55.000 19.21 0.00 35.94 4.58
4937 8455 0.965363 TCTTCCGGAATTGCCAAGCC 60.965 55.000 19.21 0.00 35.94 4.35
4938 8456 1.106285 ATCTTCCGGAATTGCCAAGC 58.894 50.000 19.21 0.00 35.94 4.01
4939 8457 1.202336 GCATCTTCCGGAATTGCCAAG 60.202 52.381 28.94 14.10 35.94 3.61
4940 8458 0.817013 GCATCTTCCGGAATTGCCAA 59.183 50.000 28.94 10.24 35.94 4.52
4941 8459 0.323269 TGCATCTTCCGGAATTGCCA 60.323 50.000 32.68 23.42 35.94 4.92
4942 8460 0.817013 TTGCATCTTCCGGAATTGCC 59.183 50.000 32.68 21.89 31.98 4.52
4943 8461 2.094545 AGTTTGCATCTTCCGGAATTGC 60.095 45.455 30.89 30.89 32.96 3.56
4944 8462 3.855689 AGTTTGCATCTTCCGGAATTG 57.144 42.857 19.21 18.70 0.00 2.32
4945 8463 5.652014 TGATAAGTTTGCATCTTCCGGAATT 59.348 36.000 19.21 8.22 0.00 2.17
4946 8464 5.066505 GTGATAAGTTTGCATCTTCCGGAAT 59.933 40.000 19.21 0.00 0.00 3.01
4947 8465 4.394920 GTGATAAGTTTGCATCTTCCGGAA 59.605 41.667 17.73 17.73 0.00 4.30
4948 8466 3.938963 GTGATAAGTTTGCATCTTCCGGA 59.061 43.478 0.00 0.00 0.00 5.14
4949 8467 3.689161 TGTGATAAGTTTGCATCTTCCGG 59.311 43.478 0.00 0.00 0.00 5.14
4950 8468 4.437390 GGTGTGATAAGTTTGCATCTTCCG 60.437 45.833 7.73 0.00 0.00 4.30
4951 8469 4.458989 TGGTGTGATAAGTTTGCATCTTCC 59.541 41.667 7.73 4.06 0.00 3.46
4952 8470 5.627499 TGGTGTGATAAGTTTGCATCTTC 57.373 39.130 7.73 0.00 0.00 2.87
4953 8471 6.403866 TTTGGTGTGATAAGTTTGCATCTT 57.596 33.333 9.13 9.13 0.00 2.40
4954 8472 6.594788 ATTTGGTGTGATAAGTTTGCATCT 57.405 33.333 0.00 0.00 0.00 2.90
4955 8473 5.512788 CGATTTGGTGTGATAAGTTTGCATC 59.487 40.000 0.00 0.00 0.00 3.91
4956 8474 5.401550 CGATTTGGTGTGATAAGTTTGCAT 58.598 37.500 0.00 0.00 0.00 3.96
4957 8475 4.793071 CGATTTGGTGTGATAAGTTTGCA 58.207 39.130 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.