Multiple sequence alignment - TraesCS3B01G170500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G170500 chr3B 100.000 5357 0 0 1 5357 171588619 171593975 0.000000e+00 9893.0
1 TraesCS3B01G170500 chr3B 83.333 72 10 2 723 792 9443661 9443732 1.250000e-06 65.8
2 TraesCS3B01G170500 chr3B 97.297 37 1 0 1685 1721 171590255 171590291 4.480000e-06 63.9
3 TraesCS3B01G170500 chr3B 97.297 37 1 0 1637 1673 171590303 171590339 4.480000e-06 63.9
4 TraesCS3B01G170500 chr3D 92.619 4552 202 58 839 5357 116399351 116403801 0.000000e+00 6421.0
5 TraesCS3B01G170500 chr3D 88.471 850 68 13 1 846 116341463 116342286 0.000000e+00 1000.0
6 TraesCS3B01G170500 chr3D 97.297 37 1 0 1637 1673 116400199 116400235 4.480000e-06 63.9
7 TraesCS3B01G170500 chr3A 94.138 1143 51 10 1655 2783 125484939 125486079 0.000000e+00 1725.0
8 TraesCS3B01G170500 chr3A 94.911 845 35 5 875 1714 125484095 125484936 0.000000e+00 1315.0
9 TraesCS3B01G170500 chr3A 93.553 729 29 10 4637 5357 125487840 125488558 0.000000e+00 1070.0
10 TraesCS3B01G170500 chr3A 90.476 378 25 6 2854 3229 125486079 125486447 6.240000e-134 488.0
11 TraesCS3B01G170500 chr3A 88.530 279 23 5 3911 4188 125487165 125487435 4.000000e-86 329.0
12 TraesCS3B01G170500 chr3A 85.560 277 32 7 3589 3864 125486896 125487165 3.160000e-72 283.0
13 TraesCS3B01G170500 chr3A 88.144 194 19 3 3194 3384 125486449 125486641 1.500000e-55 228.0
14 TraesCS3B01G170500 chr3A 89.404 151 13 3 3412 3560 125486747 125486896 2.550000e-43 187.0
15 TraesCS3B01G170500 chr3A 97.222 36 1 0 1637 1672 125484969 125485004 1.610000e-05 62.1
16 TraesCS3B01G170500 chr4D 75.149 841 146 41 2790 3602 5027751 5026946 2.390000e-88 337.0
17 TraesCS3B01G170500 chr4D 87.619 105 10 2 4887 4991 5025535 5025434 9.430000e-23 119.0
18 TraesCS3B01G170500 chr4D 91.525 59 5 0 1238 1296 5028759 5028701 1.240000e-11 82.4
19 TraesCS3B01G170500 chr4A 82.132 319 39 10 2184 2497 598706230 598706535 1.910000e-64 257.0
20 TraesCS3B01G170500 chr4B 91.525 59 5 0 1238 1296 7873174 7873116 1.240000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G170500 chr3B 171588619 171593975 5356 False 3340.266667 9893 98.198000 1 5357 3 chr3B.!!$F2 5356
1 TraesCS3B01G170500 chr3D 116399351 116403801 4450 False 3242.450000 6421 94.958000 839 5357 2 chr3D.!!$F2 4518
2 TraesCS3B01G170500 chr3D 116341463 116342286 823 False 1000.000000 1000 88.471000 1 846 1 chr3D.!!$F1 845
3 TraesCS3B01G170500 chr3A 125484095 125488558 4463 False 631.900000 1725 91.326444 875 5357 9 chr3A.!!$F1 4482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 884 0.037790 GGAACTGCTCGAGTTGCTCT 60.038 55.000 15.13 0.0 46.70 4.09 F
999 1013 0.106519 ATGGAAGCCGATCCCCAAAG 60.107 55.000 0.00 0.0 38.82 2.77 F
1005 1019 0.965363 GCCGATCCCCAAAGCTGAAA 60.965 55.000 0.00 0.0 0.00 2.69 F
1653 1674 2.038863 TTCCCTTCCTGGTAAGCTCA 57.961 50.000 0.00 0.0 0.00 4.26 F
3080 3176 1.067354 CAGGAATTGGTTTCAGGCTGC 60.067 52.381 10.34 0.0 35.94 5.25 F
3756 3973 0.176910 TTCTCGTGTGTCCTTGTGCA 59.823 50.000 0.00 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1931 2016 1.875514 TGCTGCAACTAACTTCTGCTG 59.124 47.619 0.00 0.00 37.00 4.41 R
2542 2632 3.266510 TGAATCTGCACATAGACCACC 57.733 47.619 0.00 0.00 0.00 4.61 R
2707 2798 4.164796 AGGTACATCATGCCTCAATTCAGA 59.835 41.667 0.00 0.00 39.75 3.27 R
3240 3375 0.179020 TTTGTGCTCCACCACTCCAG 60.179 55.000 0.00 0.00 36.68 3.86 R
4184 4417 0.036388 TCAGGCGCCCAAGTAAGAAG 60.036 55.000 26.15 0.14 0.00 2.85 R
5293 5574 0.670546 CAAATCGACAGACCCGCACT 60.671 55.000 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.028490 ACCTCGCGGATTTGGGCA 62.028 61.111 6.13 0.00 0.00 5.36
79 80 2.336809 CCCTCTGTCGCCGCTATC 59.663 66.667 0.00 0.00 0.00 2.08
89 90 3.705638 CCGCTATCGCACGCATGG 61.706 66.667 0.00 0.00 35.30 3.66
95 96 1.713937 TATCGCACGCATGGGCTTTG 61.714 55.000 10.10 2.00 38.64 2.77
124 125 4.988598 ACACCGGCAACAGCGGAG 62.989 66.667 0.00 0.00 0.00 4.63
140 141 1.454111 GAGGAGGAGGTGAGCGCTA 60.454 63.158 11.50 0.00 0.00 4.26
143 144 1.454111 GAGGAGGTGAGCGCTAGGA 60.454 63.158 11.50 0.00 0.00 2.94
148 149 0.465460 AGGTGAGCGCTAGGAGAGAG 60.465 60.000 11.50 0.00 0.00 3.20
152 153 2.027460 GCGCTAGGAGAGAGCTGC 59.973 66.667 0.00 0.00 46.63 5.25
194 195 2.261671 GCTCGTGAGGGAAGCGAA 59.738 61.111 0.00 0.00 34.13 4.70
195 196 1.807573 GCTCGTGAGGGAAGCGAAG 60.808 63.158 0.00 0.00 34.13 3.79
228 229 1.081892 CGAGAGGCAGTCCACAAATG 58.918 55.000 0.00 0.00 33.74 2.32
237 238 3.750371 CAGTCCACAAATGTAGTTCCCA 58.250 45.455 0.00 0.00 0.00 4.37
240 241 4.042809 AGTCCACAAATGTAGTTCCCATCA 59.957 41.667 0.00 0.00 0.00 3.07
259 260 8.172070 TCCCATCATGGATCATACAATTTATGT 58.828 33.333 4.75 0.00 40.96 2.29
296 297 3.515901 ACTGATGAGTCCCTTTAGTGGTC 59.484 47.826 0.00 0.00 0.00 4.02
336 337 3.801307 GGTTCCCTACCTCTTTTCCAA 57.199 47.619 0.00 0.00 44.10 3.53
410 411 6.114767 ACGGTTTCTCACCTTAACTTTACAA 58.885 36.000 0.00 0.00 44.69 2.41
478 479 5.519927 GGTCATCTTCCATAAAATTTTGGCG 59.480 40.000 13.76 3.32 32.80 5.69
489 490 3.812156 AATTTTGGCGGGCTAATAACC 57.188 42.857 2.38 0.00 0.00 2.85
490 491 2.217510 TTTTGGCGGGCTAATAACCA 57.782 45.000 2.38 0.00 0.00 3.67
492 493 0.394625 TTGGCGGGCTAATAACCACC 60.395 55.000 2.38 0.00 0.00 4.61
501 502 4.770531 GGGCTAATAACCACCTGAAACTTT 59.229 41.667 0.00 0.00 0.00 2.66
521 522 1.528309 CCCACCAGAACACCACCAC 60.528 63.158 0.00 0.00 0.00 4.16
530 531 3.364441 CACCACCACATGCCACCG 61.364 66.667 0.00 0.00 0.00 4.94
654 661 4.308458 CACCACCGTCCCGCTTCA 62.308 66.667 0.00 0.00 0.00 3.02
663 670 3.499737 CCCGCTTCACCACATCGC 61.500 66.667 0.00 0.00 0.00 4.58
671 678 3.071206 ACCACATCGCCTCTCGCT 61.071 61.111 0.00 0.00 38.27 4.93
672 679 2.279120 CCACATCGCCTCTCGCTC 60.279 66.667 0.00 0.00 38.27 5.03
695 702 3.869272 CTCCGCATTGCCTCGCAC 61.869 66.667 2.41 0.00 38.71 5.34
721 728 2.568090 GCCAAAGGCCATCACGTG 59.432 61.111 9.94 9.94 44.06 4.49
835 846 5.242069 TGACAAAAATTGCTTCGAGACAA 57.758 34.783 4.87 4.87 0.00 3.18
848 859 4.267349 TCGAGACAACTTTCCCTTTAGG 57.733 45.455 0.00 0.00 0.00 2.69
873 884 0.037790 GGAACTGCTCGAGTTGCTCT 60.038 55.000 15.13 0.00 46.70 4.09
887 901 1.592131 GCTCTGCGGATGCTCTCAG 60.592 63.158 0.00 0.00 43.34 3.35
957 971 1.202952 ACGGCCCAGGTTTCATGTAAA 60.203 47.619 0.00 0.00 0.00 2.01
974 988 2.676163 AAACACTCCTGTCCACGCCC 62.676 60.000 0.00 0.00 0.00 6.13
999 1013 0.106519 ATGGAAGCCGATCCCCAAAG 60.107 55.000 0.00 0.00 38.82 2.77
1005 1019 0.965363 GCCGATCCCCAAAGCTGAAA 60.965 55.000 0.00 0.00 0.00 2.69
1013 1027 2.958355 CCCCAAAGCTGAAACAGAGAAA 59.042 45.455 2.81 0.00 32.44 2.52
1034 1048 2.303022 ACCGATCGGAGCAATAATGGAT 59.697 45.455 39.55 10.32 38.96 3.41
1148 1162 2.158066 TCTGTCCCCTCTCCAGGTAAAA 60.158 50.000 0.00 0.00 38.30 1.52
1414 1433 3.119531 TGACGCTATTTTCAGCAATTGGG 60.120 43.478 7.72 0.00 41.88 4.12
1474 1493 5.825679 AGTTGTGCTTACTGTGTTATTTCCA 59.174 36.000 0.00 0.00 0.00 3.53
1572 1591 6.816140 TCAGAAAGAAATGTATCACATGCGTA 59.184 34.615 0.00 0.00 37.97 4.42
1573 1592 7.333174 TCAGAAAGAAATGTATCACATGCGTAA 59.667 33.333 0.00 0.00 37.97 3.18
1653 1674 2.038863 TTCCCTTCCTGGTAAGCTCA 57.961 50.000 0.00 0.00 0.00 4.26
1931 2016 5.751243 TTACTGGCAACTCAAAACTCTTC 57.249 39.130 0.00 0.00 37.61 2.87
2145 2230 8.934023 TTTCTGTTTACATTTGTAATCCTCCT 57.066 30.769 4.12 0.00 39.89 3.69
2325 2415 2.649190 TGTTTGGCAGCACAGTCTTTA 58.351 42.857 0.00 0.00 0.00 1.85
2542 2632 2.282555 CAGATAACCGCGTGTTCTGATG 59.717 50.000 17.39 9.99 38.42 3.07
2888 2984 5.939764 TGCACTAGGATAATCTGAACACT 57.060 39.130 0.00 0.00 0.00 3.55
2889 2985 6.299805 TGCACTAGGATAATCTGAACACTT 57.700 37.500 0.00 0.00 0.00 3.16
2890 2986 7.418337 TGCACTAGGATAATCTGAACACTTA 57.582 36.000 0.00 0.00 0.00 2.24
2891 2987 7.265673 TGCACTAGGATAATCTGAACACTTAC 58.734 38.462 0.00 0.00 0.00 2.34
3055 3151 6.006449 AGAAAACAGTTATGTCCTCTTGCAT 58.994 36.000 0.00 0.00 39.29 3.96
3069 3165 4.933400 CCTCTTGCATTTTTCAGGAATTGG 59.067 41.667 0.00 0.00 0.00 3.16
3080 3176 1.067354 CAGGAATTGGTTTCAGGCTGC 60.067 52.381 10.34 0.00 35.94 5.25
3098 3194 3.052036 CTGCCCTCATTTTTGTCGTTTG 58.948 45.455 0.00 0.00 0.00 2.93
3410 3554 6.927294 AGAGCACATACCTAAAAATGCTAC 57.073 37.500 0.00 0.00 43.20 3.58
3436 3651 8.373256 CGAGTACCAAATAACGATGCTATATTG 58.627 37.037 0.00 0.00 0.00 1.90
3438 3653 8.372459 AGTACCAAATAACGATGCTATATTGGA 58.628 33.333 8.10 0.00 0.00 3.53
3440 3655 7.871853 ACCAAATAACGATGCTATATTGGAAC 58.128 34.615 8.10 0.00 0.00 3.62
3512 3729 2.162681 GTGCAAACCTGGAGTAAGCAT 58.837 47.619 0.00 0.00 39.60 3.79
3527 3744 6.240549 AGTAAGCATTGACTGGCTATTAGT 57.759 37.500 0.00 0.00 40.01 2.24
3529 3746 5.824904 AAGCATTGACTGGCTATTAGTTG 57.175 39.130 0.00 0.00 40.01 3.16
3541 3758 2.409948 ATTAGTTGCTCAGGGCTGTC 57.590 50.000 0.00 0.00 42.39 3.51
3555 3772 1.202568 CTGTCGAAAGTGCTGTGCG 59.797 57.895 0.00 0.00 0.00 5.34
3575 3792 1.001641 AATGGTCCAGGCAGCAGAC 60.002 57.895 0.00 0.00 0.00 3.51
3579 3796 1.372683 GTCCAGGCAGCAGACAAGA 59.627 57.895 0.00 0.00 0.00 3.02
3587 3804 2.605030 GCAGCAGACAAGAGTGAGTAG 58.395 52.381 0.00 0.00 0.00 2.57
3595 3812 5.703592 CAGACAAGAGTGAGTAGTCAGTAGT 59.296 44.000 7.91 7.45 36.41 2.73
3609 3826 5.741011 AGTCAGTAGTCAAACCTTTTGTCA 58.259 37.500 0.00 0.00 0.00 3.58
3618 3835 7.110155 AGTCAAACCTTTTGTCAGAGAGTAAA 58.890 34.615 0.00 0.00 0.00 2.01
3621 3838 8.966868 TCAAACCTTTTGTCAGAGAGTAAAAAT 58.033 29.630 0.00 0.00 0.00 1.82
3645 3862 3.960571 ACAAGTAATGCTGCAAGGATCT 58.039 40.909 6.36 0.00 43.79 2.75
3647 3864 3.920231 AGTAATGCTGCAAGGATCTGA 57.080 42.857 6.36 0.00 43.79 3.27
3651 3868 1.171308 TGCTGCAAGGATCTGAAAGC 58.829 50.000 0.00 0.00 0.00 3.51
3708 3925 1.066605 GTATGATAGTGTGGCCGTCGT 59.933 52.381 0.00 0.00 0.00 4.34
3753 3970 1.806623 GCAGTTCTCGTGTGTCCTTGT 60.807 52.381 0.00 0.00 0.00 3.16
3754 3971 1.860950 CAGTTCTCGTGTGTCCTTGTG 59.139 52.381 0.00 0.00 0.00 3.33
3755 3972 0.582005 GTTCTCGTGTGTCCTTGTGC 59.418 55.000 0.00 0.00 0.00 4.57
3756 3973 0.176910 TTCTCGTGTGTCCTTGTGCA 59.823 50.000 0.00 0.00 0.00 4.57
3768 3985 5.008613 GTGTCCTTGTGCATGTTTCTTCTTA 59.991 40.000 0.00 0.00 0.00 2.10
3773 3990 9.679661 TCCTTGTGCATGTTTCTTCTTATAATA 57.320 29.630 0.00 0.00 0.00 0.98
3774 3991 9.941664 CCTTGTGCATGTTTCTTCTTATAATAG 57.058 33.333 0.00 0.00 0.00 1.73
3775 3992 9.941664 CTTGTGCATGTTTCTTCTTATAATAGG 57.058 33.333 0.00 0.00 0.00 2.57
3776 3993 9.679661 TTGTGCATGTTTCTTCTTATAATAGGA 57.320 29.630 0.00 0.00 0.00 2.94
3777 3994 9.851686 TGTGCATGTTTCTTCTTATAATAGGAT 57.148 29.630 0.00 0.00 0.00 3.24
3824 4041 9.386122 AGTAGGATATGGTATCTCAGTTTGAAT 57.614 33.333 0.00 0.00 0.00 2.57
3879 4102 3.087031 CACAGAGCTTCATTGGACCATT 58.913 45.455 0.00 0.00 0.00 3.16
3890 4113 4.665833 ATTGGACCATTCAATGATGCAG 57.334 40.909 0.00 0.00 34.01 4.41
3895 4118 4.439700 GGACCATTCAATGATGCAGACTTG 60.440 45.833 0.00 0.00 0.00 3.16
3909 4134 6.985188 TGCAGACTTGGATATCACTTAAAC 57.015 37.500 4.83 0.00 0.00 2.01
3917 4142 9.905713 ACTTGGATATCACTTAAACATGTGTAT 57.094 29.630 0.00 0.00 35.82 2.29
3930 4155 3.244387 ACATGTGTATATGGCATGCGGTA 60.244 43.478 12.44 7.37 42.50 4.02
3936 4161 1.740297 TATGGCATGCGGTAAACGTT 58.260 45.000 12.44 0.00 46.52 3.99
3973 4200 3.756963 GGACACTGTAAATTCTCCAACCC 59.243 47.826 0.00 0.00 0.00 4.11
3995 4222 1.987770 GGAAACAATGCGCTGATTGTG 59.012 47.619 22.30 8.48 44.15 3.33
4022 4249 6.010219 TCTATTTCCTGTTCTTTCCCCTTTG 58.990 40.000 0.00 0.00 0.00 2.77
4025 4252 4.258457 TCCTGTTCTTTCCCCTTTGAAA 57.742 40.909 0.00 0.00 33.42 2.69
4032 4259 3.132111 TCTTTCCCCTTTGAAACAACTGC 59.868 43.478 0.00 0.00 31.28 4.40
4045 4272 5.472137 TGAAACAACTGCCAGAATTACCTAC 59.528 40.000 0.00 0.00 0.00 3.18
4046 4273 3.951663 ACAACTGCCAGAATTACCTACC 58.048 45.455 0.00 0.00 0.00 3.18
4048 4275 4.781087 ACAACTGCCAGAATTACCTACCTA 59.219 41.667 0.00 0.00 0.00 3.08
4049 4276 5.104900 ACAACTGCCAGAATTACCTACCTAG 60.105 44.000 0.00 0.00 0.00 3.02
4050 4277 4.621769 ACTGCCAGAATTACCTACCTAGT 58.378 43.478 0.00 0.00 0.00 2.57
4051 4278 5.030820 ACTGCCAGAATTACCTACCTAGTT 58.969 41.667 0.00 0.00 0.00 2.24
4052 4279 5.487845 ACTGCCAGAATTACCTACCTAGTTT 59.512 40.000 0.00 0.00 0.00 2.66
4053 4280 5.985911 TGCCAGAATTACCTACCTAGTTTC 58.014 41.667 0.00 0.00 0.00 2.78
4054 4281 5.486063 TGCCAGAATTACCTACCTAGTTTCA 59.514 40.000 0.00 0.00 0.00 2.69
4055 4282 6.049790 GCCAGAATTACCTACCTAGTTTCAG 58.950 44.000 0.00 0.00 0.00 3.02
4056 4283 6.127140 GCCAGAATTACCTACCTAGTTTCAGA 60.127 42.308 0.00 0.00 0.00 3.27
4062 4295 7.477945 TTACCTACCTAGTTTCAGAAGAAGG 57.522 40.000 6.14 6.14 34.71 3.46
4093 4326 1.282157 ACCTGACCATGCTTCCCTTAC 59.718 52.381 0.00 0.00 0.00 2.34
4095 4328 2.420687 CCTGACCATGCTTCCCTTACTC 60.421 54.545 0.00 0.00 0.00 2.59
4184 4417 2.033927 TCTGCGACACTGAGCTATGATC 59.966 50.000 0.00 0.00 0.00 2.92
4186 4419 2.428530 TGCGACACTGAGCTATGATCTT 59.571 45.455 0.00 0.00 0.00 2.40
4187 4420 3.049206 GCGACACTGAGCTATGATCTTC 58.951 50.000 0.00 0.00 0.00 2.87
4194 4427 7.264221 ACACTGAGCTATGATCTTCTTACTTG 58.736 38.462 0.00 0.00 0.00 3.16
4207 4440 1.558167 TTACTTGGGCGCCTGATGGA 61.558 55.000 28.56 9.54 34.57 3.41
4208 4441 1.344953 TACTTGGGCGCCTGATGGAT 61.345 55.000 28.56 8.30 34.57 3.41
4224 4457 4.512571 TGATGGATATTGTCAACATGCTCG 59.487 41.667 0.00 0.00 0.00 5.03
4232 4465 3.781307 AACATGCTCGGGCGCCTA 61.781 61.111 28.56 14.32 42.25 3.93
4259 4492 0.898320 AGACCTGTTCATCTCCACCG 59.102 55.000 0.00 0.00 0.00 4.94
4312 4545 6.914654 TCCCTTTTTGTTGATGAATGATGA 57.085 33.333 0.00 0.00 0.00 2.92
4327 4560 1.554617 TGATGAACGGATCAAGCTCCA 59.445 47.619 0.00 0.00 42.54 3.86
4332 4565 5.745312 TGAACGGATCAAGCTCCATATAT 57.255 39.130 0.00 0.00 34.30 0.86
4333 4566 6.114187 TGAACGGATCAAGCTCCATATATT 57.886 37.500 0.00 0.00 34.30 1.28
4337 4570 5.221722 ACGGATCAAGCTCCATATATTGTGT 60.222 40.000 0.00 0.00 34.78 3.72
4358 4591 7.057149 GTGTATAAATGCTACACGAAACACT 57.943 36.000 0.00 0.00 39.51 3.55
4359 4592 6.953743 GTGTATAAATGCTACACGAAACACTG 59.046 38.462 0.00 0.00 39.51 3.66
4415 4657 6.424812 CCTTGATTCCATTTGTTCCTTCAAAC 59.575 38.462 0.00 0.00 39.58 2.93
4476 4723 6.404734 GCCGAATCAGATTCCATTTGTTTACT 60.405 38.462 16.23 0.00 35.89 2.24
4516 4763 1.612676 TTGCTCTGTGCTTGCATTCT 58.387 45.000 0.00 0.00 43.37 2.40
4518 4765 2.995283 TGCTCTGTGCTTGCATTCTAT 58.005 42.857 0.00 0.00 43.37 1.98
4519 4766 2.681344 TGCTCTGTGCTTGCATTCTATG 59.319 45.455 0.00 0.00 43.37 2.23
4525 4772 1.030457 GCTTGCATTCTATGGCTGCT 58.970 50.000 0.00 0.00 36.84 4.24
4526 4773 2.224606 GCTTGCATTCTATGGCTGCTA 58.775 47.619 0.00 0.00 36.84 3.49
4527 4774 2.225963 GCTTGCATTCTATGGCTGCTAG 59.774 50.000 0.00 9.25 40.28 3.42
4528 4775 3.736720 CTTGCATTCTATGGCTGCTAGA 58.263 45.455 0.00 0.00 39.90 2.43
4529 4776 3.117491 TGCATTCTATGGCTGCTAGAC 57.883 47.619 0.00 0.00 36.84 2.59
4530 4777 2.435437 TGCATTCTATGGCTGCTAGACA 59.565 45.455 0.00 0.00 37.84 3.41
4531 4778 2.805099 GCATTCTATGGCTGCTAGACAC 59.195 50.000 0.00 0.00 35.04 3.67
4533 4780 3.808466 TTCTATGGCTGCTAGACACTG 57.192 47.619 0.00 0.00 35.04 3.66
4549 4810 2.291153 ACACTGCCACTTAATCCTGCAT 60.291 45.455 0.00 0.00 0.00 3.96
4652 4918 3.727258 CGGGCCCACCTGAATGGA 61.727 66.667 24.92 0.00 46.41 3.41
4653 4919 3.018901 GGGCCCACCTGAATGGAT 58.981 61.111 19.95 0.00 43.02 3.41
4654 4920 1.456331 GGGCCCACCTGAATGGATG 60.456 63.158 19.95 0.00 43.02 3.51
4655 4921 1.307647 GGCCCACCTGAATGGATGT 59.692 57.895 0.00 0.00 43.02 3.06
4656 4922 0.753111 GGCCCACCTGAATGGATGTC 60.753 60.000 0.00 0.00 43.02 3.06
4657 4923 1.097547 GCCCACCTGAATGGATGTCG 61.098 60.000 0.00 0.00 43.02 4.35
4658 4924 1.097547 CCCACCTGAATGGATGTCGC 61.098 60.000 0.00 0.00 43.02 5.19
4659 4925 1.431488 CCACCTGAATGGATGTCGCG 61.431 60.000 0.00 0.00 43.02 5.87
4660 4926 1.153369 ACCTGAATGGATGTCGCGG 60.153 57.895 6.13 0.00 39.71 6.46
4661 4927 2.537560 CCTGAATGGATGTCGCGGC 61.538 63.158 2.29 2.29 38.35 6.53
4662 4928 2.874694 CTGAATGGATGTCGCGGCG 61.875 63.158 17.70 17.70 0.00 6.46
4663 4929 3.640000 GAATGGATGTCGCGGCGG 61.640 66.667 23.46 3.89 0.00 6.13
4709 4979 4.357947 GCACGCGTGGACTCTCCA 62.358 66.667 37.47 0.00 45.98 3.86
4732 5002 4.708177 GCTATATGCTTCAGTTCTCCCAA 58.292 43.478 0.00 0.00 38.95 4.12
4743 5013 5.147032 TCAGTTCTCCCAACCATTTTCAAT 58.853 37.500 0.00 0.00 0.00 2.57
5239 5520 2.437895 GTAAGCTGTTCCCCGCCC 60.438 66.667 0.00 0.00 0.00 6.13
5277 5558 3.429080 CTGCTCTCCCGCTGCTCTC 62.429 68.421 0.00 0.00 0.00 3.20
5293 5574 1.745653 CTCTCTCTGGTGTATGCGTGA 59.254 52.381 0.00 0.00 0.00 4.35
5342 5623 0.900647 TGGTGGCGGGTTTAATTGGG 60.901 55.000 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.070265 TCCCTCCACCGGATCCGT 62.070 66.667 31.22 17.31 37.81 4.69
40 41 1.834822 CTCCTCCCTCCACCGGATC 60.835 68.421 9.46 0.00 0.00 3.36
104 105 4.368808 CGCTGTTGCCGGTGTTCG 62.369 66.667 1.90 0.00 35.36 3.95
105 106 4.025401 CCGCTGTTGCCGGTGTTC 62.025 66.667 1.90 0.00 35.36 3.18
116 117 2.681778 CACCTCCTCCTCCGCTGT 60.682 66.667 0.00 0.00 0.00 4.40
120 121 3.522731 CGCTCACCTCCTCCTCCG 61.523 72.222 0.00 0.00 0.00 4.63
124 125 2.494530 CCTAGCGCTCACCTCCTCC 61.495 68.421 16.34 0.00 0.00 4.30
171 172 0.803768 CTTCCCTCACGAGCGACATG 60.804 60.000 0.00 0.00 0.00 3.21
172 173 1.513158 CTTCCCTCACGAGCGACAT 59.487 57.895 0.00 0.00 0.00 3.06
196 197 3.447634 CTCTCGCGACTGCCTCTCG 62.448 68.421 3.71 0.00 38.08 4.04
197 198 2.407210 CTCTCGCGACTGCCTCTC 59.593 66.667 3.71 0.00 38.08 3.20
198 199 3.137459 CCTCTCGCGACTGCCTCT 61.137 66.667 3.71 0.00 38.08 3.69
199 200 4.863925 GCCTCTCGCGACTGCCTC 62.864 72.222 3.71 0.00 38.08 4.70
202 203 4.427661 ACTGCCTCTCGCGACTGC 62.428 66.667 3.71 8.88 42.08 4.40
203 204 2.202544 GACTGCCTCTCGCGACTG 60.203 66.667 3.71 1.82 42.08 3.51
204 205 3.444805 GGACTGCCTCTCGCGACT 61.445 66.667 3.71 0.00 42.08 4.18
205 206 3.749064 TGGACTGCCTCTCGCGAC 61.749 66.667 3.71 0.00 42.08 5.19
206 207 3.749064 GTGGACTGCCTCTCGCGA 61.749 66.667 9.26 9.26 42.08 5.87
207 208 3.573772 TTGTGGACTGCCTCTCGCG 62.574 63.158 0.00 0.00 42.08 5.87
228 229 6.114187 TGTATGATCCATGATGGGAACTAC 57.886 41.667 12.26 9.36 41.12 2.73
259 260 7.552687 GGACTCATCAGTTAACATGGTTCATAA 59.447 37.037 8.61 0.00 30.63 1.90
269 270 6.464222 CACTAAAGGGACTCATCAGTTAACA 58.536 40.000 8.61 0.00 38.49 2.41
275 276 3.118592 GGACCACTAAAGGGACTCATCAG 60.119 52.174 0.00 0.00 38.49 2.90
279 280 1.263356 CGGACCACTAAAGGGACTCA 58.737 55.000 0.00 0.00 38.49 3.41
329 330 4.780815 ACTCAGTGTCACATCTTGGAAAA 58.219 39.130 5.62 0.00 0.00 2.29
336 337 5.644977 TTCGATAACTCAGTGTCACATCT 57.355 39.130 5.62 0.00 0.00 2.90
410 411 5.369110 AGAGATGGCCAGTTTTATGAGATCT 59.631 40.000 13.05 3.87 0.00 2.75
465 466 6.127026 TGGTTATTAGCCCGCCAAAATTTTAT 60.127 34.615 2.44 0.00 0.00 1.40
478 479 3.964411 AGTTTCAGGTGGTTATTAGCCC 58.036 45.455 0.00 0.00 0.00 5.19
489 490 1.328279 GGTGGGGAAAGTTTCAGGTG 58.672 55.000 17.16 0.00 0.00 4.00
490 491 0.930726 TGGTGGGGAAAGTTTCAGGT 59.069 50.000 17.16 0.00 0.00 4.00
492 493 2.623416 GTTCTGGTGGGGAAAGTTTCAG 59.377 50.000 17.16 5.77 0.00 3.02
501 502 2.457323 GGTGGTGTTCTGGTGGGGA 61.457 63.158 0.00 0.00 0.00 4.81
721 728 1.598130 GCCCACCAGTCAGTGACAC 60.598 63.158 24.73 0.00 40.34 3.67
793 804 8.459521 TTGTCATTTGTGAGTAAACTTGTTTG 57.540 30.769 8.79 0.00 0.00 2.93
809 820 6.198778 TGTCTCGAAGCAATTTTTGTCATTTG 59.801 34.615 0.00 0.00 0.00 2.32
850 861 2.943978 AACTCGAGCAGTTCCCCCG 61.944 63.158 13.61 0.00 42.07 5.73
851 862 1.376037 CAACTCGAGCAGTTCCCCC 60.376 63.158 13.61 0.00 44.14 5.40
873 884 2.467993 TTTGGCTGAGAGCATCCGCA 62.468 55.000 7.46 0.00 44.75 5.69
887 901 3.157087 TGGGAAGAAGTCAAGATTTGGC 58.843 45.455 0.00 0.00 34.90 4.52
892 906 2.273619 AGGCTGGGAAGAAGTCAAGAT 58.726 47.619 0.00 0.00 0.00 2.40
946 960 4.819630 TGGACAGGAGTGTTTACATGAAAC 59.180 41.667 0.00 6.76 46.57 2.78
957 971 3.626924 GGGCGTGGACAGGAGTGT 61.627 66.667 0.00 0.00 40.71 3.55
974 988 1.595382 GATCGGCTTCCATCGGGTG 60.595 63.158 0.00 0.00 34.93 4.61
999 1013 2.092838 CGATCGGTTTCTCTGTTTCAGC 59.907 50.000 7.38 0.00 0.00 4.26
1005 1019 0.173708 GCTCCGATCGGTTTCTCTGT 59.826 55.000 32.15 0.00 36.47 3.41
1013 1027 1.691976 TCCATTATTGCTCCGATCGGT 59.308 47.619 32.15 16.29 36.47 4.69
1148 1162 1.609794 GGTTCTCGGAGGGGTCTGT 60.610 63.158 4.96 0.00 0.00 3.41
1414 1433 8.652290 AGTTCTTAATCCCTCAATGTATAGGAC 58.348 37.037 0.00 0.00 34.58 3.85
1442 1461 5.753921 ACACAGTAAGCACAACTCTTAACTC 59.246 40.000 0.00 0.00 0.00 3.01
1592 1611 7.066525 TCAGTGTTGGGTTAACTAAAGTTCTTG 59.933 37.037 5.42 0.00 40.05 3.02
1931 2016 1.875514 TGCTGCAACTAACTTCTGCTG 59.124 47.619 0.00 0.00 37.00 4.41
2325 2415 8.933653 CCTCAATTGTTTATTTACCCCCATTAT 58.066 33.333 5.13 0.00 0.00 1.28
2542 2632 3.266510 TGAATCTGCACATAGACCACC 57.733 47.619 0.00 0.00 0.00 4.61
2707 2798 4.164796 AGGTACATCATGCCTCAATTCAGA 59.835 41.667 0.00 0.00 39.75 3.27
3038 3134 6.071728 CCTGAAAAATGCAAGAGGACATAACT 60.072 38.462 0.00 0.00 0.00 2.24
3055 3151 4.408596 AGCCTGAAACCAATTCCTGAAAAA 59.591 37.500 0.00 0.00 37.22 1.94
3069 3165 1.260544 AAATGAGGGCAGCCTGAAAC 58.739 50.000 12.43 0.00 0.00 2.78
3080 3176 3.317993 AGACCAAACGACAAAAATGAGGG 59.682 43.478 0.00 0.00 0.00 4.30
3098 3194 4.906618 TGGGTGAAGAGATACAAAAGACC 58.093 43.478 0.00 0.00 0.00 3.85
3143 3241 2.625737 CTGGAACTGACCATGCTACAG 58.374 52.381 9.38 9.38 39.34 2.74
3240 3375 0.179020 TTTGTGCTCCACCACTCCAG 60.179 55.000 0.00 0.00 36.68 3.86
3410 3554 8.373256 CAATATAGCATCGTTATTTGGTACTCG 58.627 37.037 0.00 0.00 0.00 4.18
3436 3651 1.064685 CCACTCATGGTTAGGGGTTCC 60.065 57.143 0.00 0.00 41.64 3.62
3512 3729 4.507710 CTGAGCAACTAATAGCCAGTCAA 58.492 43.478 0.00 0.00 0.00 3.18
3529 3746 1.004440 ACTTTCGACAGCCCTGAGC 60.004 57.895 1.69 0.00 44.25 4.26
3555 3772 2.677524 TGCTGCCTGGACCATTGC 60.678 61.111 0.00 8.78 0.00 3.56
3563 3780 0.954449 CACTCTTGTCTGCTGCCTGG 60.954 60.000 0.00 0.00 0.00 4.45
3575 3792 6.561737 TTGACTACTGACTACTCACTCTTG 57.438 41.667 0.00 0.00 0.00 3.02
3579 3796 5.386924 AGGTTTGACTACTGACTACTCACT 58.613 41.667 0.00 0.00 0.00 3.41
3587 3804 5.815740 TCTGACAAAAGGTTTGACTACTGAC 59.184 40.000 7.68 0.00 0.00 3.51
3595 3812 7.931578 TTTTACTCTCTGACAAAAGGTTTGA 57.068 32.000 7.68 0.00 0.00 2.69
3618 3835 6.991938 TCCTTGCAGCATTACTTGTTAATTT 58.008 32.000 0.00 0.00 0.00 1.82
3621 3838 5.945784 AGATCCTTGCAGCATTACTTGTTAA 59.054 36.000 0.00 0.00 0.00 2.01
3625 3842 3.943381 TCAGATCCTTGCAGCATTACTTG 59.057 43.478 0.00 0.00 0.00 3.16
3708 3925 3.306225 GCCATGATTCAGCAAGGAAAACA 60.306 43.478 0.00 0.00 0.00 2.83
3775 3992 1.134280 ACACTGCTGCTGGACCATATC 60.134 52.381 11.29 0.00 0.00 1.63
3776 3993 0.914644 ACACTGCTGCTGGACCATAT 59.085 50.000 11.29 0.00 0.00 1.78
3777 3994 0.036105 CACACTGCTGCTGGACCATA 60.036 55.000 11.29 0.00 0.00 2.74
3778 3995 1.303074 CACACTGCTGCTGGACCAT 60.303 57.895 11.29 0.00 0.00 3.55
3779 3996 2.111669 CACACTGCTGCTGGACCA 59.888 61.111 11.29 0.00 0.00 4.02
3824 4041 7.701539 AGCATTATGTCATGTTTTCCACTTA 57.298 32.000 0.00 0.00 0.00 2.24
3825 4042 6.594788 AGCATTATGTCATGTTTTCCACTT 57.405 33.333 0.00 0.00 0.00 3.16
3853 4071 3.755378 GTCCAATGAAGCTCTGTGTTCAT 59.245 43.478 0.00 0.00 43.71 2.57
3879 4102 5.761726 GTGATATCCAAGTCTGCATCATTGA 59.238 40.000 0.00 0.00 0.00 2.57
3890 4113 8.268850 ACACATGTTTAAGTGATATCCAAGTC 57.731 34.615 0.00 0.00 39.03 3.01
3909 4134 2.153645 ACCGCATGCCATATACACATG 58.846 47.619 13.15 6.96 43.21 3.21
3917 4142 1.398739 CAACGTTTACCGCATGCCATA 59.601 47.619 13.15 1.32 41.42 2.74
3920 4145 0.450184 ATCAACGTTTACCGCATGCC 59.550 50.000 13.15 0.00 41.42 4.40
3930 4155 3.056891 CCAAATACCCTGCATCAACGTTT 60.057 43.478 0.00 0.00 0.00 3.60
3936 4161 2.308570 AGTGTCCAAATACCCTGCATCA 59.691 45.455 0.00 0.00 0.00 3.07
3973 4200 2.256174 CAATCAGCGCATTGTTTCCTG 58.744 47.619 11.47 0.00 0.00 3.86
3995 4222 5.045505 AGGGGAAAGAACAGGAAATAGAGAC 60.046 44.000 0.00 0.00 0.00 3.36
4022 4249 5.106277 GGTAGGTAATTCTGGCAGTTGTTTC 60.106 44.000 15.27 5.98 0.00 2.78
4025 4252 3.587506 AGGTAGGTAATTCTGGCAGTTGT 59.412 43.478 15.27 3.18 0.00 3.32
4032 4259 7.419711 TCTGAAACTAGGTAGGTAATTCTGG 57.580 40.000 0.00 0.00 0.00 3.86
4045 4272 3.261897 TGCCTCCTTCTTCTGAAACTAGG 59.738 47.826 0.00 6.01 32.75 3.02
4046 4273 4.221703 TCTGCCTCCTTCTTCTGAAACTAG 59.778 45.833 0.00 0.00 0.00 2.57
4048 4275 2.975489 TCTGCCTCCTTCTTCTGAAACT 59.025 45.455 0.00 0.00 0.00 2.66
4049 4276 3.409026 TCTGCCTCCTTCTTCTGAAAC 57.591 47.619 0.00 0.00 0.00 2.78
4050 4277 4.647564 ATTCTGCCTCCTTCTTCTGAAA 57.352 40.909 0.00 0.00 0.00 2.69
4051 4278 4.647564 AATTCTGCCTCCTTCTTCTGAA 57.352 40.909 0.00 0.00 0.00 3.02
4052 4279 4.080863 GGTAATTCTGCCTCCTTCTTCTGA 60.081 45.833 0.00 0.00 0.00 3.27
4053 4280 4.080638 AGGTAATTCTGCCTCCTTCTTCTG 60.081 45.833 0.00 0.00 30.56 3.02
4054 4281 4.080638 CAGGTAATTCTGCCTCCTTCTTCT 60.081 45.833 0.00 0.00 35.03 2.85
4055 4282 4.080863 TCAGGTAATTCTGCCTCCTTCTTC 60.081 45.833 0.00 0.00 35.03 2.87
4056 4283 3.846588 TCAGGTAATTCTGCCTCCTTCTT 59.153 43.478 0.00 0.00 35.03 2.52
4062 4295 3.209410 CATGGTCAGGTAATTCTGCCTC 58.791 50.000 0.00 0.00 35.03 4.70
4093 4326 0.753262 AAGCTATACCTGCGGTGGAG 59.247 55.000 10.01 7.96 36.19 3.86
4095 4328 0.464036 TCAAGCTATACCTGCGGTGG 59.536 55.000 10.01 0.00 36.19 4.61
4184 4417 0.036388 TCAGGCGCCCAAGTAAGAAG 60.036 55.000 26.15 0.14 0.00 2.85
4186 4419 0.107703 CATCAGGCGCCCAAGTAAGA 60.108 55.000 26.15 10.31 0.00 2.10
4187 4420 1.097547 CCATCAGGCGCCCAAGTAAG 61.098 60.000 26.15 6.83 0.00 2.34
4194 4427 0.250901 ACAATATCCATCAGGCGCCC 60.251 55.000 26.15 5.07 33.74 6.13
4207 4440 1.949525 GCCCGAGCATGTTGACAATAT 59.050 47.619 0.00 0.00 39.53 1.28
4208 4441 1.378531 GCCCGAGCATGTTGACAATA 58.621 50.000 0.00 0.00 39.53 1.90
4224 4457 0.738975 GTCTCCAATTTTAGGCGCCC 59.261 55.000 26.15 5.07 0.00 6.13
4259 4492 0.465097 ATACATGCACTGCTGGAGCC 60.465 55.000 1.98 0.00 41.18 4.70
4312 4545 5.702670 CACAATATATGGAGCTTGATCCGTT 59.297 40.000 4.90 0.00 42.77 4.44
4337 4570 7.661127 AACAGTGTTTCGTGTAGCATTTATA 57.339 32.000 1.64 0.00 0.00 0.98
4377 4614 3.621558 GAATCAAGGGTTACAGAAGGGG 58.378 50.000 0.00 0.00 0.00 4.79
4415 4657 7.221452 GCAGCAACAAATTTACATAGAATCTGG 59.779 37.037 0.00 0.00 0.00 3.86
4453 4700 8.023128 ACAAGTAAACAAATGGAATCTGATTCG 58.977 33.333 20.72 11.19 40.17 3.34
4516 4763 0.465705 GGCAGTGTCTAGCAGCCATA 59.534 55.000 10.51 0.00 44.59 2.74
4518 4765 2.665000 GGCAGTGTCTAGCAGCCA 59.335 61.111 10.51 0.00 44.59 4.75
4519 4766 1.743252 GTGGCAGTGTCTAGCAGCC 60.743 63.158 0.00 0.00 45.41 4.85
4525 4772 3.369471 GCAGGATTAAGTGGCAGTGTCTA 60.369 47.826 0.00 0.00 0.00 2.59
4526 4773 2.616510 GCAGGATTAAGTGGCAGTGTCT 60.617 50.000 0.00 0.00 0.00 3.41
4527 4774 1.740025 GCAGGATTAAGTGGCAGTGTC 59.260 52.381 0.00 0.00 0.00 3.67
4528 4775 1.073763 TGCAGGATTAAGTGGCAGTGT 59.926 47.619 0.00 0.00 0.00 3.55
4529 4776 1.825090 TGCAGGATTAAGTGGCAGTG 58.175 50.000 0.00 0.00 0.00 3.66
4530 4777 2.814805 ATGCAGGATTAAGTGGCAGT 57.185 45.000 0.00 0.00 37.96 4.40
4531 4778 4.460948 AAAATGCAGGATTAAGTGGCAG 57.539 40.909 0.00 0.00 37.96 4.85
4533 4780 4.819769 TGAAAAATGCAGGATTAAGTGGC 58.180 39.130 0.00 0.00 0.00 5.01
4549 4810 2.109834 TCTGCAAGAGGGGGATGAAAAA 59.890 45.455 0.00 0.00 38.67 1.94
4642 4908 1.153369 CCGCGACATCCATTCAGGT 60.153 57.895 8.23 0.00 39.02 4.00
4643 4909 2.537560 GCCGCGACATCCATTCAGG 61.538 63.158 8.23 0.00 39.47 3.86
4644 4910 2.874694 CGCCGCGACATCCATTCAG 61.875 63.158 8.23 0.00 0.00 3.02
4645 4911 2.889988 CGCCGCGACATCCATTCA 60.890 61.111 8.23 0.00 0.00 2.57
4646 4912 3.640000 CCGCCGCGACATCCATTC 61.640 66.667 15.93 0.00 0.00 2.67
4664 4930 3.660111 GTTCACTGGCGTGTGGGC 61.660 66.667 9.90 1.57 41.89 5.36
4665 4931 2.978010 GGTTCACTGGCGTGTGGG 60.978 66.667 9.90 0.00 41.89 4.61
4666 4932 3.345808 CGGTTCACTGGCGTGTGG 61.346 66.667 9.90 0.00 41.89 4.17
4667 4933 3.345808 CCGGTTCACTGGCGTGTG 61.346 66.667 0.00 6.72 41.89 3.82
4710 4980 4.342862 TGGGAGAACTGAAGCATATAGC 57.657 45.455 0.00 0.00 46.19 2.97
4711 4981 5.059833 GGTTGGGAGAACTGAAGCATATAG 58.940 45.833 0.00 0.00 0.00 1.31
4712 4982 4.473196 TGGTTGGGAGAACTGAAGCATATA 59.527 41.667 0.00 0.00 0.00 0.86
4713 4983 3.266772 TGGTTGGGAGAACTGAAGCATAT 59.733 43.478 0.00 0.00 0.00 1.78
4714 4984 2.642311 TGGTTGGGAGAACTGAAGCATA 59.358 45.455 0.00 0.00 0.00 3.14
4715 4985 1.425066 TGGTTGGGAGAACTGAAGCAT 59.575 47.619 0.00 0.00 0.00 3.79
4732 5002 4.747605 CGGGTTTCGAAAATTGAAAATGGT 59.252 37.500 13.10 0.00 42.43 3.55
4743 5013 0.810823 AGCGACACGGGTTTCGAAAA 60.811 50.000 13.10 0.00 42.43 2.29
4792 5062 2.525629 GGGGGAGGAGGAGCTAGC 60.526 72.222 6.62 6.62 0.00 3.42
4893 5171 4.383861 TCTCTGCGGCTGTGGCTG 62.384 66.667 0.00 0.00 46.87 4.85
4930 5208 4.874528 GCTTCCTCAGCTCCATCC 57.125 61.111 0.00 0.00 46.27 3.51
5239 5520 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
5277 5558 1.633561 CACTCACGCATACACCAGAG 58.366 55.000 0.00 0.00 0.00 3.35
5293 5574 0.670546 CAAATCGACAGACCCGCACT 60.671 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.