Multiple sequence alignment - TraesCS3B01G170000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G170000 | chr3B | 100.000 | 4745 | 0 | 0 | 1 | 4745 | 169836768 | 169832024 | 0.000000e+00 | 8763.0 |
1 | TraesCS3B01G170000 | chr3B | 95.497 | 1932 | 73 | 12 | 1075 | 2994 | 169693883 | 169691954 | 0.000000e+00 | 3073.0 |
2 | TraesCS3B01G170000 | chr3B | 96.727 | 611 | 17 | 2 | 3726 | 4336 | 169690863 | 169690256 | 0.000000e+00 | 1014.0 |
3 | TraesCS3B01G170000 | chr3B | 99.565 | 460 | 2 | 0 | 2992 | 3451 | 169691796 | 169691337 | 0.000000e+00 | 839.0 |
4 | TraesCS3B01G170000 | chr3B | 93.250 | 400 | 8 | 2 | 4365 | 4745 | 169690254 | 169689855 | 5.330000e-159 | 571.0 |
5 | TraesCS3B01G170000 | chr3B | 96.416 | 279 | 8 | 2 | 3452 | 3730 | 169691300 | 169691024 | 4.330000e-125 | 459.0 |
6 | TraesCS3B01G170000 | chr3D | 94.904 | 2453 | 75 | 21 | 1012 | 3451 | 116163118 | 116160703 | 0.000000e+00 | 3792.0 |
7 | TraesCS3B01G170000 | chr3D | 96.970 | 528 | 13 | 3 | 3452 | 3979 | 116160666 | 116160142 | 0.000000e+00 | 883.0 |
8 | TraesCS3B01G170000 | chr3D | 88.983 | 118 | 12 | 1 | 4162 | 4278 | 116159962 | 116159845 | 1.380000e-30 | 145.0 |
9 | TraesCS3B01G170000 | chr3A | 94.242 | 2275 | 97 | 16 | 1201 | 3451 | 125094963 | 125092699 | 0.000000e+00 | 3445.0 |
10 | TraesCS3B01G170000 | chr3A | 96.491 | 456 | 12 | 4 | 3452 | 3907 | 125092662 | 125092211 | 0.000000e+00 | 750.0 |
11 | TraesCS3B01G170000 | chr3A | 89.899 | 198 | 18 | 2 | 4083 | 4278 | 125091868 | 125091671 | 2.190000e-63 | 254.0 |
12 | TraesCS3B01G170000 | chr4D | 95.140 | 823 | 40 | 0 | 1 | 823 | 3576893 | 3577715 | 0.000000e+00 | 1299.0 |
13 | TraesCS3B01G170000 | chr2D | 95.128 | 821 | 36 | 2 | 1 | 821 | 39292163 | 39291347 | 0.000000e+00 | 1291.0 |
14 | TraesCS3B01G170000 | chr5B | 88.712 | 815 | 76 | 11 | 1 | 815 | 129148713 | 129147915 | 0.000000e+00 | 981.0 |
15 | TraesCS3B01G170000 | chr5B | 97.222 | 36 | 0 | 1 | 427 | 461 | 129148259 | 129148224 | 5.130000e-05 | 60.2 |
16 | TraesCS3B01G170000 | chr5D | 88.571 | 70 | 7 | 1 | 4004 | 4072 | 539674255 | 539674186 | 3.040000e-12 | 84.2 |
17 | TraesCS3B01G170000 | chrUn | 83.750 | 80 | 11 | 2 | 6 | 84 | 46065729 | 46065807 | 1.830000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G170000 | chr3B | 169832024 | 169836768 | 4744 | True | 8763.000000 | 8763 | 100.000 | 1 | 4745 | 1 | chr3B.!!$R1 | 4744 |
1 | TraesCS3B01G170000 | chr3B | 169689855 | 169693883 | 4028 | True | 1191.200000 | 3073 | 96.291 | 1075 | 4745 | 5 | chr3B.!!$R2 | 3670 |
2 | TraesCS3B01G170000 | chr3D | 116159845 | 116163118 | 3273 | True | 1606.666667 | 3792 | 93.619 | 1012 | 4278 | 3 | chr3D.!!$R1 | 3266 |
3 | TraesCS3B01G170000 | chr3A | 125091671 | 125094963 | 3292 | True | 1483.000000 | 3445 | 93.544 | 1201 | 4278 | 3 | chr3A.!!$R1 | 3077 |
4 | TraesCS3B01G170000 | chr4D | 3576893 | 3577715 | 822 | False | 1299.000000 | 1299 | 95.140 | 1 | 823 | 1 | chr4D.!!$F1 | 822 |
5 | TraesCS3B01G170000 | chr2D | 39291347 | 39292163 | 816 | True | 1291.000000 | 1291 | 95.128 | 1 | 821 | 1 | chr2D.!!$R1 | 820 |
6 | TraesCS3B01G170000 | chr5B | 129147915 | 129148713 | 798 | True | 520.600000 | 981 | 92.967 | 1 | 815 | 2 | chr5B.!!$R1 | 814 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
425 | 426 | 0.037139 | GCATTTGGCTGCAACCATCA | 60.037 | 50.000 | 10.21 | 0.0 | 41.87 | 3.07 | F |
1310 | 1317 | 0.036306 | CACCCCTTTACTTCCACGCT | 59.964 | 55.000 | 0.00 | 0.0 | 0.00 | 5.07 | F |
1311 | 1318 | 0.323957 | ACCCCTTTACTTCCACGCTC | 59.676 | 55.000 | 0.00 | 0.0 | 0.00 | 5.03 | F |
2031 | 2069 | 1.278985 | CCAGTAAGTGCCACTCATCCA | 59.721 | 52.381 | 0.00 | 0.0 | 0.00 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1626 | 1645 | 1.210155 | GCCATTGCAGTTGTCGTCC | 59.790 | 57.895 | 0.00 | 0.00 | 37.47 | 4.79 | R |
2746 | 2785 | 5.123344 | AGCTTGCTGGTTTAAGTTATAACCG | 59.877 | 40.000 | 12.05 | 13.06 | 45.40 | 4.44 | R |
2949 | 2988 | 5.643777 | AGTACAAACTCACATAAGACATGCC | 59.356 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 | R |
3778 | 4178 | 0.799534 | GCACGCATTGAGCATGTTCC | 60.800 | 55.000 | 7.13 | 0.00 | 46.13 | 3.62 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
57 | 58 | 2.124109 | TGCAACCGTTGAGGCCAA | 60.124 | 55.556 | 15.63 | 0.00 | 46.52 | 4.52 |
194 | 195 | 1.896220 | TCCAGCACAAAATCTCGCTT | 58.104 | 45.000 | 0.00 | 0.00 | 30.72 | 4.68 |
281 | 282 | 0.179097 | GGTTCCAGGATCTGCGAGAC | 60.179 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
282 | 283 | 0.532573 | GTTCCAGGATCTGCGAGACA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
291 | 292 | 1.300620 | CTGCGAGACACGGTTCCAA | 60.301 | 57.895 | 0.00 | 0.00 | 42.83 | 3.53 |
304 | 305 | 2.742053 | CGGTTCCAACAAATCATCTCGT | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
391 | 392 | 4.752879 | GAACCGGCAGCCGCACTA | 62.753 | 66.667 | 29.55 | 0.00 | 46.86 | 2.74 |
412 | 413 | 0.039978 | TACAACCGTTGGCGCATTTG | 60.040 | 50.000 | 15.60 | 5.07 | 36.67 | 2.32 |
425 | 426 | 0.037139 | GCATTTGGCTGCAACCATCA | 60.037 | 50.000 | 10.21 | 0.00 | 41.87 | 3.07 |
476 | 477 | 3.595758 | GCACCAAGCTGCAACGGT | 61.596 | 61.111 | 1.02 | 1.76 | 41.15 | 4.83 |
542 | 543 | 2.288213 | GGCAACTTTCCTGCAACCTTAC | 60.288 | 50.000 | 0.00 | 0.00 | 41.78 | 2.34 |
567 | 568 | 2.174685 | TGAAGCTACTAGGCCATGGA | 57.825 | 50.000 | 18.40 | 0.00 | 0.00 | 3.41 |
677 | 682 | 3.047877 | GCCAAGTCCCACGTTCCG | 61.048 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
774 | 779 | 1.369091 | CCTAATCAAACGGCTGCGCT | 61.369 | 55.000 | 9.73 | 0.00 | 0.00 | 5.92 |
818 | 823 | 2.362120 | ACCGGCGCCTAGTACTGT | 60.362 | 61.111 | 26.68 | 6.90 | 0.00 | 3.55 |
823 | 828 | 1.396653 | GGCGCCTAGTACTGTCCTAA | 58.603 | 55.000 | 22.15 | 0.00 | 0.00 | 2.69 |
824 | 829 | 1.066757 | GGCGCCTAGTACTGTCCTAAC | 59.933 | 57.143 | 22.15 | 0.00 | 0.00 | 2.34 |
825 | 830 | 1.747355 | GCGCCTAGTACTGTCCTAACA | 59.253 | 52.381 | 5.39 | 0.00 | 0.00 | 2.41 |
826 | 831 | 2.165030 | GCGCCTAGTACTGTCCTAACAA | 59.835 | 50.000 | 5.39 | 0.00 | 34.24 | 2.83 |
827 | 832 | 3.367703 | GCGCCTAGTACTGTCCTAACAAA | 60.368 | 47.826 | 5.39 | 0.00 | 34.24 | 2.83 |
828 | 833 | 4.813027 | CGCCTAGTACTGTCCTAACAAAA | 58.187 | 43.478 | 5.39 | 0.00 | 34.24 | 2.44 |
829 | 834 | 5.416947 | CGCCTAGTACTGTCCTAACAAAAT | 58.583 | 41.667 | 5.39 | 0.00 | 34.24 | 1.82 |
830 | 835 | 5.873164 | CGCCTAGTACTGTCCTAACAAAATT | 59.127 | 40.000 | 5.39 | 0.00 | 34.24 | 1.82 |
831 | 836 | 6.370718 | CGCCTAGTACTGTCCTAACAAAATTT | 59.629 | 38.462 | 5.39 | 0.00 | 34.24 | 1.82 |
832 | 837 | 7.546667 | CGCCTAGTACTGTCCTAACAAAATTTA | 59.453 | 37.037 | 5.39 | 0.00 | 34.24 | 1.40 |
833 | 838 | 8.663025 | GCCTAGTACTGTCCTAACAAAATTTAC | 58.337 | 37.037 | 5.39 | 0.00 | 34.24 | 2.01 |
834 | 839 | 9.715121 | CCTAGTACTGTCCTAACAAAATTTACA | 57.285 | 33.333 | 5.39 | 0.00 | 34.24 | 2.41 |
836 | 841 | 8.387190 | AGTACTGTCCTAACAAAATTTACACC | 57.613 | 34.615 | 0.00 | 0.00 | 34.24 | 4.16 |
837 | 842 | 6.308371 | ACTGTCCTAACAAAATTTACACCG | 57.692 | 37.500 | 0.00 | 0.00 | 34.24 | 4.94 |
838 | 843 | 6.056884 | ACTGTCCTAACAAAATTTACACCGA | 58.943 | 36.000 | 0.00 | 0.00 | 34.24 | 4.69 |
839 | 844 | 6.543100 | ACTGTCCTAACAAAATTTACACCGAA | 59.457 | 34.615 | 0.00 | 0.00 | 34.24 | 4.30 |
840 | 845 | 7.067251 | ACTGTCCTAACAAAATTTACACCGAAA | 59.933 | 33.333 | 0.00 | 0.00 | 34.24 | 3.46 |
841 | 846 | 7.419204 | TGTCCTAACAAAATTTACACCGAAAG | 58.581 | 34.615 | 0.00 | 0.00 | 30.70 | 2.62 |
842 | 847 | 7.282675 | TGTCCTAACAAAATTTACACCGAAAGA | 59.717 | 33.333 | 0.00 | 0.00 | 30.70 | 2.52 |
843 | 848 | 7.801783 | GTCCTAACAAAATTTACACCGAAAGAG | 59.198 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
844 | 849 | 7.499895 | TCCTAACAAAATTTACACCGAAAGAGT | 59.500 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
845 | 850 | 8.132995 | CCTAACAAAATTTACACCGAAAGAGTT | 58.867 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
848 | 853 | 9.511144 | AACAAAATTTACACCGAAAGAGTTAAG | 57.489 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
849 | 854 | 8.680001 | ACAAAATTTACACCGAAAGAGTTAAGT | 58.320 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
850 | 855 | 9.166126 | CAAAATTTACACCGAAAGAGTTAAGTC | 57.834 | 33.333 | 1.75 | 1.75 | 0.00 | 3.01 |
851 | 856 | 8.441312 | AAATTTACACCGAAAGAGTTAAGTCA | 57.559 | 30.769 | 12.77 | 0.00 | 0.00 | 3.41 |
852 | 857 | 6.833342 | TTTACACCGAAAGAGTTAAGTCAC | 57.167 | 37.500 | 12.77 | 3.22 | 0.00 | 3.67 |
853 | 858 | 3.725490 | ACACCGAAAGAGTTAAGTCACC | 58.275 | 45.455 | 12.77 | 0.70 | 0.00 | 4.02 |
854 | 859 | 3.133362 | ACACCGAAAGAGTTAAGTCACCA | 59.867 | 43.478 | 12.77 | 0.00 | 0.00 | 4.17 |
855 | 860 | 3.493503 | CACCGAAAGAGTTAAGTCACCAC | 59.506 | 47.826 | 12.77 | 1.01 | 0.00 | 4.16 |
856 | 861 | 3.133362 | ACCGAAAGAGTTAAGTCACCACA | 59.867 | 43.478 | 12.77 | 0.00 | 0.00 | 4.17 |
857 | 862 | 4.124238 | CCGAAAGAGTTAAGTCACCACAA | 58.876 | 43.478 | 12.77 | 0.00 | 0.00 | 3.33 |
858 | 863 | 4.573201 | CCGAAAGAGTTAAGTCACCACAAA | 59.427 | 41.667 | 12.77 | 0.00 | 0.00 | 2.83 |
859 | 864 | 5.065474 | CCGAAAGAGTTAAGTCACCACAAAA | 59.935 | 40.000 | 12.77 | 0.00 | 0.00 | 2.44 |
860 | 865 | 6.238648 | CCGAAAGAGTTAAGTCACCACAAAAT | 60.239 | 38.462 | 12.77 | 0.00 | 0.00 | 1.82 |
861 | 866 | 7.193595 | CGAAAGAGTTAAGTCACCACAAAATT | 58.806 | 34.615 | 12.77 | 0.00 | 0.00 | 1.82 |
862 | 867 | 7.165812 | CGAAAGAGTTAAGTCACCACAAAATTG | 59.834 | 37.037 | 12.77 | 0.00 | 0.00 | 2.32 |
863 | 868 | 7.404671 | AAGAGTTAAGTCACCACAAAATTGT | 57.595 | 32.000 | 12.77 | 0.00 | 43.36 | 2.71 |
864 | 869 | 8.514330 | AAGAGTTAAGTCACCACAAAATTGTA | 57.486 | 30.769 | 12.77 | 0.00 | 39.91 | 2.41 |
865 | 870 | 7.927048 | AGAGTTAAGTCACCACAAAATTGTAC | 58.073 | 34.615 | 12.77 | 0.00 | 39.91 | 2.90 |
866 | 871 | 7.773690 | AGAGTTAAGTCACCACAAAATTGTACT | 59.226 | 33.333 | 12.77 | 0.00 | 39.91 | 2.73 |
867 | 872 | 8.967664 | AGTTAAGTCACCACAAAATTGTACTA | 57.032 | 30.769 | 0.00 | 0.00 | 39.91 | 1.82 |
868 | 873 | 9.398538 | AGTTAAGTCACCACAAAATTGTACTAA | 57.601 | 29.630 | 0.00 | 0.00 | 39.91 | 2.24 |
872 | 877 | 7.581476 | AGTCACCACAAAATTGTACTAAATCG | 58.419 | 34.615 | 0.00 | 0.00 | 39.91 | 3.34 |
873 | 878 | 6.304683 | GTCACCACAAAATTGTACTAAATCGC | 59.695 | 38.462 | 0.00 | 0.00 | 39.91 | 4.58 |
874 | 879 | 6.017026 | TCACCACAAAATTGTACTAAATCGCA | 60.017 | 34.615 | 0.00 | 0.00 | 39.91 | 5.10 |
875 | 880 | 6.305399 | CACCACAAAATTGTACTAAATCGCAG | 59.695 | 38.462 | 0.00 | 0.00 | 39.91 | 5.18 |
876 | 881 | 5.286082 | CCACAAAATTGTACTAAATCGCAGC | 59.714 | 40.000 | 0.00 | 0.00 | 39.91 | 5.25 |
877 | 882 | 5.855925 | CACAAAATTGTACTAAATCGCAGCA | 59.144 | 36.000 | 0.00 | 0.00 | 39.91 | 4.41 |
878 | 883 | 6.032775 | CACAAAATTGTACTAAATCGCAGCAG | 59.967 | 38.462 | 0.00 | 0.00 | 39.91 | 4.24 |
879 | 884 | 4.882671 | AATTGTACTAAATCGCAGCAGG | 57.117 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
880 | 885 | 3.603158 | TTGTACTAAATCGCAGCAGGA | 57.397 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
881 | 886 | 3.165058 | TGTACTAAATCGCAGCAGGAG | 57.835 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
882 | 887 | 1.861575 | GTACTAAATCGCAGCAGGAGC | 59.138 | 52.381 | 0.00 | 0.00 | 42.56 | 4.70 |
883 | 888 | 0.462759 | ACTAAATCGCAGCAGGAGCC | 60.463 | 55.000 | 0.00 | 0.00 | 43.56 | 4.70 |
884 | 889 | 1.153168 | TAAATCGCAGCAGGAGCCC | 60.153 | 57.895 | 0.00 | 0.00 | 43.56 | 5.19 |
885 | 890 | 1.909459 | TAAATCGCAGCAGGAGCCCA | 61.909 | 55.000 | 0.00 | 0.00 | 43.56 | 5.36 |
886 | 891 | 2.769652 | AAATCGCAGCAGGAGCCCAA | 62.770 | 55.000 | 0.00 | 0.00 | 43.56 | 4.12 |
887 | 892 | 2.769652 | AATCGCAGCAGGAGCCCAAA | 62.770 | 55.000 | 0.00 | 0.00 | 43.56 | 3.28 |
888 | 893 | 2.563013 | ATCGCAGCAGGAGCCCAAAT | 62.563 | 55.000 | 0.00 | 0.00 | 43.56 | 2.32 |
889 | 894 | 2.345760 | CGCAGCAGGAGCCCAAATT | 61.346 | 57.895 | 0.00 | 0.00 | 43.56 | 1.82 |
890 | 895 | 1.031571 | CGCAGCAGGAGCCCAAATTA | 61.032 | 55.000 | 0.00 | 0.00 | 43.56 | 1.40 |
891 | 896 | 1.185315 | GCAGCAGGAGCCCAAATTAA | 58.815 | 50.000 | 0.00 | 0.00 | 43.56 | 1.40 |
892 | 897 | 1.758862 | GCAGCAGGAGCCCAAATTAAT | 59.241 | 47.619 | 0.00 | 0.00 | 43.56 | 1.40 |
893 | 898 | 2.958355 | GCAGCAGGAGCCCAAATTAATA | 59.042 | 45.455 | 0.00 | 0.00 | 43.56 | 0.98 |
894 | 899 | 3.243535 | GCAGCAGGAGCCCAAATTAATAC | 60.244 | 47.826 | 0.00 | 0.00 | 43.56 | 1.89 |
895 | 900 | 3.953612 | CAGCAGGAGCCCAAATTAATACA | 59.046 | 43.478 | 0.00 | 0.00 | 43.56 | 2.29 |
896 | 901 | 3.954258 | AGCAGGAGCCCAAATTAATACAC | 59.046 | 43.478 | 0.00 | 0.00 | 43.56 | 2.90 |
897 | 902 | 3.243068 | GCAGGAGCCCAAATTAATACACG | 60.243 | 47.826 | 0.00 | 0.00 | 33.58 | 4.49 |
898 | 903 | 3.945285 | CAGGAGCCCAAATTAATACACGT | 59.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
899 | 904 | 3.945285 | AGGAGCCCAAATTAATACACGTG | 59.055 | 43.478 | 15.48 | 15.48 | 0.00 | 4.49 |
900 | 905 | 3.488553 | GGAGCCCAAATTAATACACGTGC | 60.489 | 47.826 | 17.22 | 0.00 | 0.00 | 5.34 |
901 | 906 | 2.425668 | AGCCCAAATTAATACACGTGCC | 59.574 | 45.455 | 17.22 | 0.00 | 0.00 | 5.01 |
902 | 907 | 2.425668 | GCCCAAATTAATACACGTGCCT | 59.574 | 45.455 | 17.22 | 2.35 | 0.00 | 4.75 |
903 | 908 | 3.733684 | GCCCAAATTAATACACGTGCCTG | 60.734 | 47.826 | 17.22 | 1.42 | 0.00 | 4.85 |
904 | 909 | 3.434637 | CCAAATTAATACACGTGCCTGC | 58.565 | 45.455 | 17.22 | 0.00 | 0.00 | 4.85 |
905 | 910 | 3.119673 | CCAAATTAATACACGTGCCTGCA | 60.120 | 43.478 | 17.22 | 0.00 | 0.00 | 4.41 |
906 | 911 | 3.757745 | AATTAATACACGTGCCTGCAC | 57.242 | 42.857 | 17.22 | 12.18 | 43.01 | 4.57 |
907 | 912 | 2.465860 | TTAATACACGTGCCTGCACT | 57.534 | 45.000 | 17.22 | 4.41 | 44.16 | 4.40 |
908 | 913 | 2.004583 | TAATACACGTGCCTGCACTC | 57.995 | 50.000 | 17.22 | 0.00 | 44.16 | 3.51 |
909 | 914 | 1.014044 | AATACACGTGCCTGCACTCG | 61.014 | 55.000 | 17.22 | 12.28 | 44.16 | 4.18 |
910 | 915 | 1.873270 | ATACACGTGCCTGCACTCGA | 61.873 | 55.000 | 17.22 | 3.56 | 44.16 | 4.04 |
911 | 916 | 1.873270 | TACACGTGCCTGCACTCGAT | 61.873 | 55.000 | 17.22 | 5.74 | 44.16 | 3.59 |
912 | 917 | 1.153842 | CACGTGCCTGCACTCGATA | 60.154 | 57.895 | 19.07 | 0.00 | 44.16 | 2.92 |
913 | 918 | 1.139734 | ACGTGCCTGCACTCGATAG | 59.860 | 57.895 | 19.07 | 5.96 | 44.16 | 2.08 |
914 | 919 | 1.589993 | CGTGCCTGCACTCGATAGG | 60.590 | 63.158 | 19.07 | 0.00 | 44.16 | 2.57 |
915 | 920 | 1.517832 | GTGCCTGCACTCGATAGGT | 59.482 | 57.895 | 14.77 | 0.00 | 43.12 | 3.08 |
916 | 921 | 0.108138 | GTGCCTGCACTCGATAGGTT | 60.108 | 55.000 | 14.77 | 0.00 | 43.12 | 3.50 |
917 | 922 | 0.175760 | TGCCTGCACTCGATAGGTTC | 59.824 | 55.000 | 6.92 | 0.00 | 34.06 | 3.62 |
918 | 923 | 0.175760 | GCCTGCACTCGATAGGTTCA | 59.824 | 55.000 | 6.92 | 0.00 | 34.06 | 3.18 |
919 | 924 | 1.927895 | CCTGCACTCGATAGGTTCAC | 58.072 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
920 | 925 | 1.204704 | CCTGCACTCGATAGGTTCACA | 59.795 | 52.381 | 0.00 | 0.00 | 0.00 | 3.58 |
921 | 926 | 2.353704 | CCTGCACTCGATAGGTTCACAA | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
922 | 927 | 2.926200 | CTGCACTCGATAGGTTCACAAG | 59.074 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
923 | 928 | 2.299013 | TGCACTCGATAGGTTCACAAGT | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
924 | 929 | 3.244078 | TGCACTCGATAGGTTCACAAGTT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
925 | 930 | 3.123621 | GCACTCGATAGGTTCACAAGTTG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
926 | 931 | 3.123621 | CACTCGATAGGTTCACAAGTTGC | 59.876 | 47.826 | 1.81 | 0.00 | 0.00 | 4.17 |
927 | 932 | 3.244078 | ACTCGATAGGTTCACAAGTTGCA | 60.244 | 43.478 | 1.81 | 0.00 | 0.00 | 4.08 |
928 | 933 | 3.734463 | TCGATAGGTTCACAAGTTGCAA | 58.266 | 40.909 | 1.81 | 0.00 | 0.00 | 4.08 |
929 | 934 | 4.323417 | TCGATAGGTTCACAAGTTGCAAT | 58.677 | 39.130 | 0.59 | 0.00 | 0.00 | 3.56 |
930 | 935 | 4.391830 | TCGATAGGTTCACAAGTTGCAATC | 59.608 | 41.667 | 0.59 | 0.00 | 0.00 | 2.67 |
931 | 936 | 4.154015 | CGATAGGTTCACAAGTTGCAATCA | 59.846 | 41.667 | 0.59 | 0.00 | 0.00 | 2.57 |
932 | 937 | 5.334802 | CGATAGGTTCACAAGTTGCAATCAA | 60.335 | 40.000 | 0.59 | 0.00 | 0.00 | 2.57 |
951 | 956 | 2.029743 | CCAAGTGGTGAAACGTGGG | 58.970 | 57.895 | 0.00 | 0.00 | 43.52 | 4.61 |
952 | 957 | 0.750182 | CCAAGTGGTGAAACGTGGGT | 60.750 | 55.000 | 0.00 | 0.00 | 43.52 | 4.51 |
953 | 958 | 0.380378 | CAAGTGGTGAAACGTGGGTG | 59.620 | 55.000 | 0.00 | 0.00 | 38.12 | 4.61 |
954 | 959 | 1.381165 | AAGTGGTGAAACGTGGGTGC | 61.381 | 55.000 | 0.00 | 0.00 | 38.12 | 5.01 |
955 | 960 | 2.897846 | TGGTGAAACGTGGGTGCG | 60.898 | 61.111 | 0.00 | 0.00 | 38.12 | 5.34 |
956 | 961 | 2.589442 | GGTGAAACGTGGGTGCGA | 60.589 | 61.111 | 0.00 | 0.00 | 38.12 | 5.10 |
957 | 962 | 2.181521 | GGTGAAACGTGGGTGCGAA | 61.182 | 57.895 | 0.00 | 0.00 | 38.12 | 4.70 |
958 | 963 | 1.278637 | GTGAAACGTGGGTGCGAAG | 59.721 | 57.895 | 0.00 | 0.00 | 35.59 | 3.79 |
959 | 964 | 1.153329 | TGAAACGTGGGTGCGAAGT | 60.153 | 52.632 | 0.00 | 0.00 | 35.59 | 3.01 |
960 | 965 | 1.155424 | TGAAACGTGGGTGCGAAGTC | 61.155 | 55.000 | 0.00 | 0.00 | 35.59 | 3.01 |
961 | 966 | 0.878961 | GAAACGTGGGTGCGAAGTCT | 60.879 | 55.000 | 0.00 | 0.00 | 35.59 | 3.24 |
962 | 967 | 0.463116 | AAACGTGGGTGCGAAGTCTT | 60.463 | 50.000 | 0.00 | 0.00 | 35.59 | 3.01 |
963 | 968 | 1.157870 | AACGTGGGTGCGAAGTCTTG | 61.158 | 55.000 | 0.00 | 0.00 | 35.59 | 3.02 |
964 | 969 | 1.300620 | CGTGGGTGCGAAGTCTTGA | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 3.02 |
965 | 970 | 0.670546 | CGTGGGTGCGAAGTCTTGAT | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
966 | 971 | 1.523758 | GTGGGTGCGAAGTCTTGATT | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
967 | 972 | 2.695359 | GTGGGTGCGAAGTCTTGATTA | 58.305 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
968 | 973 | 2.673368 | GTGGGTGCGAAGTCTTGATTAG | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
969 | 974 | 2.565391 | TGGGTGCGAAGTCTTGATTAGA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
970 | 975 | 3.007506 | TGGGTGCGAAGTCTTGATTAGAA | 59.992 | 43.478 | 0.00 | 0.00 | 33.81 | 2.10 |
971 | 976 | 4.000988 | GGGTGCGAAGTCTTGATTAGAAA | 58.999 | 43.478 | 0.00 | 0.00 | 33.81 | 2.52 |
972 | 977 | 4.636206 | GGGTGCGAAGTCTTGATTAGAAAT | 59.364 | 41.667 | 0.00 | 0.00 | 33.81 | 2.17 |
973 | 978 | 5.815740 | GGGTGCGAAGTCTTGATTAGAAATA | 59.184 | 40.000 | 0.00 | 0.00 | 33.81 | 1.40 |
974 | 979 | 6.018669 | GGGTGCGAAGTCTTGATTAGAAATAG | 60.019 | 42.308 | 0.00 | 0.00 | 33.81 | 1.73 |
975 | 980 | 6.018669 | GGTGCGAAGTCTTGATTAGAAATAGG | 60.019 | 42.308 | 0.00 | 0.00 | 33.81 | 2.57 |
976 | 981 | 6.018669 | GTGCGAAGTCTTGATTAGAAATAGGG | 60.019 | 42.308 | 0.00 | 0.00 | 33.81 | 3.53 |
977 | 982 | 5.467063 | GCGAAGTCTTGATTAGAAATAGGGG | 59.533 | 44.000 | 0.00 | 0.00 | 33.81 | 4.79 |
978 | 983 | 6.583562 | CGAAGTCTTGATTAGAAATAGGGGT | 58.416 | 40.000 | 0.00 | 0.00 | 33.81 | 4.95 |
979 | 984 | 7.048512 | CGAAGTCTTGATTAGAAATAGGGGTT | 58.951 | 38.462 | 0.00 | 0.00 | 33.81 | 4.11 |
980 | 985 | 7.553044 | CGAAGTCTTGATTAGAAATAGGGGTTT | 59.447 | 37.037 | 0.00 | 0.00 | 33.81 | 3.27 |
981 | 986 | 9.244292 | GAAGTCTTGATTAGAAATAGGGGTTTT | 57.756 | 33.333 | 0.00 | 0.00 | 33.81 | 2.43 |
982 | 987 | 8.581253 | AGTCTTGATTAGAAATAGGGGTTTTG | 57.419 | 34.615 | 0.00 | 0.00 | 33.81 | 2.44 |
983 | 988 | 7.615757 | AGTCTTGATTAGAAATAGGGGTTTTGG | 59.384 | 37.037 | 0.00 | 0.00 | 33.81 | 3.28 |
984 | 989 | 7.396339 | GTCTTGATTAGAAATAGGGGTTTTGGT | 59.604 | 37.037 | 0.00 | 0.00 | 33.81 | 3.67 |
985 | 990 | 8.616598 | TCTTGATTAGAAATAGGGGTTTTGGTA | 58.383 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
986 | 991 | 9.421399 | CTTGATTAGAAATAGGGGTTTTGGTAT | 57.579 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
987 | 992 | 8.760980 | TGATTAGAAATAGGGGTTTTGGTATG | 57.239 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
988 | 993 | 8.340757 | TGATTAGAAATAGGGGTTTTGGTATGT | 58.659 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
989 | 994 | 8.762481 | ATTAGAAATAGGGGTTTTGGTATGTC | 57.238 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
990 | 995 | 6.402981 | AGAAATAGGGGTTTTGGTATGTCT | 57.597 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
991 | 996 | 6.424032 | AGAAATAGGGGTTTTGGTATGTCTC | 58.576 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
992 | 997 | 4.790718 | ATAGGGGTTTTGGTATGTCTCC | 57.209 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
993 | 998 | 2.644151 | AGGGGTTTTGGTATGTCTCCT | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
994 | 999 | 2.993863 | AGGGGTTTTGGTATGTCTCCTT | 59.006 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
995 | 1000 | 3.089284 | GGGGTTTTGGTATGTCTCCTTG | 58.911 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
996 | 1001 | 3.499745 | GGGGTTTTGGTATGTCTCCTTGT | 60.500 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
997 | 1002 | 4.263594 | GGGGTTTTGGTATGTCTCCTTGTA | 60.264 | 45.833 | 0.00 | 0.00 | 0.00 | 2.41 |
998 | 1003 | 5.318630 | GGGTTTTGGTATGTCTCCTTGTAA | 58.681 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
999 | 1004 | 5.182570 | GGGTTTTGGTATGTCTCCTTGTAAC | 59.817 | 44.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1000 | 1005 | 5.766174 | GGTTTTGGTATGTCTCCTTGTAACA | 59.234 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1001 | 1006 | 6.433093 | GGTTTTGGTATGTCTCCTTGTAACAT | 59.567 | 38.462 | 0.00 | 0.00 | 37.40 | 2.71 |
1002 | 1007 | 7.608761 | GGTTTTGGTATGTCTCCTTGTAACATA | 59.391 | 37.037 | 0.00 | 0.00 | 35.38 | 2.29 |
1003 | 1008 | 9.005777 | GTTTTGGTATGTCTCCTTGTAACATAA | 57.994 | 33.333 | 0.00 | 0.00 | 37.56 | 1.90 |
1004 | 1009 | 8.556213 | TTTGGTATGTCTCCTTGTAACATAAC | 57.444 | 34.615 | 3.44 | 3.44 | 41.71 | 1.89 |
1005 | 1010 | 7.490657 | TGGTATGTCTCCTTGTAACATAACT | 57.509 | 36.000 | 10.19 | 0.00 | 41.83 | 2.24 |
1006 | 1011 | 7.553334 | TGGTATGTCTCCTTGTAACATAACTC | 58.447 | 38.462 | 10.19 | 0.25 | 41.83 | 3.01 |
1007 | 1012 | 6.696148 | GGTATGTCTCCTTGTAACATAACTCG | 59.304 | 42.308 | 3.21 | 0.00 | 39.43 | 4.18 |
1008 | 1013 | 5.970317 | TGTCTCCTTGTAACATAACTCGA | 57.030 | 39.130 | 0.00 | 0.00 | 0.00 | 4.04 |
1009 | 1014 | 5.950883 | TGTCTCCTTGTAACATAACTCGAG | 58.049 | 41.667 | 11.84 | 11.84 | 0.00 | 4.04 |
1010 | 1015 | 5.475909 | TGTCTCCTTGTAACATAACTCGAGT | 59.524 | 40.000 | 13.58 | 13.58 | 0.00 | 4.18 |
1016 | 1021 | 9.146984 | TCCTTGTAACATAACTCGAGTATTTTG | 57.853 | 33.333 | 20.39 | 15.51 | 0.00 | 2.44 |
1021 | 1026 | 9.750882 | GTAACATAACTCGAGTATTTTGTTTCC | 57.249 | 33.333 | 26.30 | 18.54 | 0.00 | 3.13 |
1110 | 1115 | 4.660938 | GAACCCCTGGCGGTTGCT | 62.661 | 66.667 | 20.02 | 1.52 | 46.35 | 3.91 |
1140 | 1145 | 0.459237 | CTGAGAAGCGATTCTGCCGT | 60.459 | 55.000 | 22.47 | 0.00 | 34.65 | 5.68 |
1156 | 1161 | 0.255890 | CCGTGGATCAGGGGAAACAT | 59.744 | 55.000 | 0.00 | 0.00 | 35.96 | 2.71 |
1196 | 1201 | 2.273449 | CTACCCCAGCCCTTGCAG | 59.727 | 66.667 | 0.00 | 0.00 | 41.13 | 4.41 |
1305 | 1312 | 2.215942 | ATGTGCACCCCTTTACTTCC | 57.784 | 50.000 | 15.69 | 0.00 | 0.00 | 3.46 |
1306 | 1313 | 0.847373 | TGTGCACCCCTTTACTTCCA | 59.153 | 50.000 | 15.69 | 0.00 | 0.00 | 3.53 |
1307 | 1314 | 1.244816 | GTGCACCCCTTTACTTCCAC | 58.755 | 55.000 | 5.22 | 0.00 | 0.00 | 4.02 |
1308 | 1315 | 0.250553 | TGCACCCCTTTACTTCCACG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
1309 | 1316 | 1.583495 | GCACCCCTTTACTTCCACGC | 61.583 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1310 | 1317 | 0.036306 | CACCCCTTTACTTCCACGCT | 59.964 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1311 | 1318 | 0.323957 | ACCCCTTTACTTCCACGCTC | 59.676 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1496 | 1508 | 2.978824 | CCGAGTGATTGACGGGGT | 59.021 | 61.111 | 0.00 | 0.00 | 42.48 | 4.95 |
1522 | 1538 | 5.224441 | AGAAAGATTGCCCAGGTACCTATA | 58.776 | 41.667 | 15.80 | 0.00 | 0.00 | 1.31 |
1563 | 1579 | 3.088532 | TCCCCGAAATTTCAACCATGAG | 58.911 | 45.455 | 17.99 | 0.00 | 36.78 | 2.90 |
1578 | 1594 | 6.043938 | TCAACCATGAGTAAGTTAACTTCCCT | 59.956 | 38.462 | 23.76 | 19.46 | 37.40 | 4.20 |
1618 | 1634 | 1.938577 | CAGGGAATGAAGCAGTCGATG | 59.061 | 52.381 | 0.00 | 0.00 | 28.47 | 3.84 |
1626 | 1645 | 2.200067 | GAAGCAGTCGATGGTGATGAG | 58.800 | 52.381 | 0.00 | 0.00 | 40.26 | 2.90 |
1672 | 1706 | 4.925054 | TCGTTTACGAGGACAATAAACCAG | 59.075 | 41.667 | 0.03 | 0.00 | 44.22 | 4.00 |
1699 | 1733 | 4.621747 | CGAAGATAATCTGCCCAGGTATCC | 60.622 | 50.000 | 12.37 | 0.00 | 31.71 | 2.59 |
1820 | 1855 | 2.015587 | GCAGAGGAAATTGAGCTGGAG | 58.984 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1859 | 1894 | 3.181456 | GCAAGCAGATGGGAGAATACTCT | 60.181 | 47.826 | 0.00 | 0.00 | 42.28 | 3.24 |
2029 | 2067 | 2.770164 | ACCAGTAAGTGCCACTCATC | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
2031 | 2069 | 1.278985 | CCAGTAAGTGCCACTCATCCA | 59.721 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2158 | 2196 | 5.362556 | TGCTACAGTTCTTTTCAATGAGC | 57.637 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
2311 | 2349 | 9.423061 | CAGGTAAATAAAGCTTGCTTTGTTTAT | 57.577 | 29.630 | 31.97 | 22.77 | 39.86 | 1.40 |
2361 | 2400 | 6.935167 | TGTTCAACAGCTCAACTCTATGATA | 58.065 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
2746 | 2785 | 6.518493 | TGGGAACGAGACATGGTAATAATAC | 58.482 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2885 | 2924 | 2.356125 | CCGAGATGAATGGGGTCAAAGT | 60.356 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2949 | 2988 | 7.910162 | CACCCAATATTTGATTTAGACGAACAG | 59.090 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2971 | 3010 | 5.643348 | CAGGCATGTCTTATGTGAGTTTGTA | 59.357 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3346 | 3545 | 2.201732 | TCACGTGAAGTTCACTGCTTC | 58.798 | 47.619 | 28.53 | 6.64 | 44.85 | 3.86 |
3500 | 3735 | 1.095600 | TCAGTTCTCCCGATGACTCG | 58.904 | 55.000 | 0.00 | 0.00 | 44.62 | 4.18 |
3585 | 3820 | 4.697756 | CGCCGGCCTCCTGACAAA | 62.698 | 66.667 | 23.46 | 0.00 | 0.00 | 2.83 |
3586 | 3821 | 3.056328 | GCCGGCCTCCTGACAAAC | 61.056 | 66.667 | 18.11 | 0.00 | 0.00 | 2.93 |
3587 | 3822 | 2.359975 | CCGGCCTCCTGACAAACC | 60.360 | 66.667 | 0.00 | 0.00 | 0.00 | 3.27 |
3588 | 3823 | 2.742372 | CGGCCTCCTGACAAACCG | 60.742 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
3589 | 3824 | 3.056328 | GGCCTCCTGACAAACCGC | 61.056 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
3590 | 3825 | 3.423154 | GCCTCCTGACAAACCGCG | 61.423 | 66.667 | 0.00 | 0.00 | 0.00 | 6.46 |
3591 | 3826 | 2.342279 | CCTCCTGACAAACCGCGA | 59.658 | 61.111 | 8.23 | 0.00 | 0.00 | 5.87 |
3592 | 3827 | 1.079127 | CCTCCTGACAAACCGCGAT | 60.079 | 57.895 | 8.23 | 0.00 | 0.00 | 4.58 |
3607 | 3842 | 2.279136 | CCGCGATTTAAGTGAAGACTCG | 59.721 | 50.000 | 8.23 | 0.00 | 0.00 | 4.18 |
3608 | 3843 | 3.168963 | CGCGATTTAAGTGAAGACTCGA | 58.831 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
3610 | 3845 | 4.086025 | CGCGATTTAAGTGAAGACTCGATC | 60.086 | 45.833 | 0.00 | 0.00 | 0.00 | 3.69 |
3617 | 3852 | 3.426615 | AGTGAAGACTCGATCCTTCAGT | 58.573 | 45.455 | 22.21 | 21.97 | 46.33 | 3.41 |
3629 | 3864 | 2.745968 | TCCTTCAGTTTGGCCAGTTTT | 58.254 | 42.857 | 5.11 | 0.00 | 0.00 | 2.43 |
3740 | 4140 | 6.183360 | CCTGTGCCTTCTACTTAGTATAGCAA | 60.183 | 42.308 | 7.14 | 0.89 | 0.00 | 3.91 |
3778 | 4178 | 2.218603 | AGTTGAACCGCTGTAAACCTG | 58.781 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3970 | 4370 | 2.432510 | AGGTGTCCTATGCTGTTCTAGC | 59.567 | 50.000 | 0.00 | 0.00 | 42.15 | 3.42 |
4001 | 4401 | 7.519057 | ACTCAGCAGTATTATACTACCTCTGA | 58.481 | 38.462 | 4.41 | 12.69 | 37.23 | 3.27 |
4068 | 4468 | 7.639113 | AATAATCTTACATTTTGAGGCGGAA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4069 | 4469 | 5.567138 | AATCTTACATTTTGAGGCGGAAG | 57.433 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
4088 | 4655 | 6.571150 | GCGGAAGAGGAGTAGTAGTTTTAACA | 60.571 | 42.308 | 0.00 | 0.00 | 0.00 | 2.41 |
4221 | 4872 | 0.966875 | GGTGGTTGATGATGCTGCCA | 60.967 | 55.000 | 0.00 | 0.00 | 0.00 | 4.92 |
4287 | 4939 | 2.095853 | AGTGCGTTTTGATAGGCAATCG | 59.904 | 45.455 | 0.00 | 0.00 | 40.20 | 3.34 |
4322 | 4974 | 7.465900 | AAAATTCCCAAGTAGGATATCCTCA | 57.534 | 36.000 | 27.86 | 11.63 | 44.77 | 3.86 |
4324 | 4976 | 7.654287 | AATTCCCAAGTAGGATATCCTCAAT | 57.346 | 36.000 | 27.86 | 12.09 | 44.77 | 2.57 |
4336 | 4988 | 5.766670 | GGATATCCTCAATGCTGTTCATCAA | 59.233 | 40.000 | 14.97 | 0.00 | 33.40 | 2.57 |
4337 | 4989 | 6.263842 | GGATATCCTCAATGCTGTTCATCAAA | 59.736 | 38.462 | 14.97 | 0.00 | 33.40 | 2.69 |
4338 | 4990 | 7.039923 | GGATATCCTCAATGCTGTTCATCAAAT | 60.040 | 37.037 | 14.97 | 0.00 | 33.40 | 2.32 |
4339 | 4991 | 5.571784 | TCCTCAATGCTGTTCATCAAATC | 57.428 | 39.130 | 0.00 | 0.00 | 33.40 | 2.17 |
4340 | 4992 | 5.011586 | TCCTCAATGCTGTTCATCAAATCA | 58.988 | 37.500 | 0.00 | 0.00 | 33.40 | 2.57 |
4341 | 4993 | 5.124936 | TCCTCAATGCTGTTCATCAAATCAG | 59.875 | 40.000 | 0.00 | 0.00 | 33.40 | 2.90 |
4342 | 4994 | 5.124936 | CCTCAATGCTGTTCATCAAATCAGA | 59.875 | 40.000 | 0.00 | 0.00 | 33.40 | 3.27 |
4343 | 4995 | 5.946298 | TCAATGCTGTTCATCAAATCAGAC | 58.054 | 37.500 | 0.00 | 0.00 | 33.40 | 3.51 |
4344 | 4996 | 5.474189 | TCAATGCTGTTCATCAAATCAGACA | 59.526 | 36.000 | 0.00 | 0.00 | 33.40 | 3.41 |
4345 | 4997 | 4.754372 | TGCTGTTCATCAAATCAGACAC | 57.246 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
4346 | 4998 | 3.503363 | TGCTGTTCATCAAATCAGACACC | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
4347 | 4999 | 3.119708 | GCTGTTCATCAAATCAGACACCC | 60.120 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
4348 | 5000 | 4.074259 | CTGTTCATCAAATCAGACACCCA | 58.926 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
4349 | 5001 | 4.468713 | TGTTCATCAAATCAGACACCCAA | 58.531 | 39.130 | 0.00 | 0.00 | 0.00 | 4.12 |
4350 | 5002 | 4.892345 | TGTTCATCAAATCAGACACCCAAA | 59.108 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
4351 | 5003 | 5.362143 | TGTTCATCAAATCAGACACCCAAAA | 59.638 | 36.000 | 0.00 | 0.00 | 0.00 | 2.44 |
4352 | 5004 | 5.452078 | TCATCAAATCAGACACCCAAAAC | 57.548 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
4353 | 5005 | 3.980646 | TCAAATCAGACACCCAAAACG | 57.019 | 42.857 | 0.00 | 0.00 | 0.00 | 3.60 |
4354 | 5006 | 3.283751 | TCAAATCAGACACCCAAAACGT | 58.716 | 40.909 | 0.00 | 0.00 | 0.00 | 3.99 |
4355 | 5007 | 3.314080 | TCAAATCAGACACCCAAAACGTC | 59.686 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
4356 | 5008 | 2.930826 | ATCAGACACCCAAAACGTCT | 57.069 | 45.000 | 0.00 | 0.00 | 40.60 | 4.18 |
4357 | 5009 | 4.345859 | AATCAGACACCCAAAACGTCTA | 57.654 | 40.909 | 0.00 | 0.00 | 37.92 | 2.59 |
4358 | 5010 | 4.553330 | ATCAGACACCCAAAACGTCTAT | 57.447 | 40.909 | 0.00 | 0.00 | 37.92 | 1.98 |
4359 | 5011 | 5.670792 | ATCAGACACCCAAAACGTCTATA | 57.329 | 39.130 | 0.00 | 0.00 | 37.92 | 1.31 |
4360 | 5012 | 5.068234 | TCAGACACCCAAAACGTCTATAG | 57.932 | 43.478 | 0.00 | 0.00 | 37.92 | 1.31 |
4361 | 5013 | 4.768448 | TCAGACACCCAAAACGTCTATAGA | 59.232 | 41.667 | 0.00 | 0.00 | 37.92 | 1.98 |
4362 | 5014 | 4.863131 | CAGACACCCAAAACGTCTATAGAC | 59.137 | 45.833 | 21.00 | 21.00 | 37.92 | 2.59 |
4363 | 5015 | 4.525487 | AGACACCCAAAACGTCTATAGACA | 59.475 | 41.667 | 28.00 | 0.00 | 44.99 | 3.41 |
4471 | 5141 | 6.468543 | TGCAATGAACAAGGTACACTATGTA | 58.531 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4525 | 5196 | 9.474313 | AGGAAAACATTTAGAGGCATTACATTA | 57.526 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
4681 | 5352 | 2.397777 | TGTTGTATTGCGCACAGTTG | 57.602 | 45.000 | 11.12 | 0.00 | 0.00 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
57 | 58 | 1.270907 | CTGACAGGGGTTGTAGCTCT | 58.729 | 55.000 | 0.00 | 0.00 | 41.05 | 4.09 |
270 | 271 | 0.802607 | GGAACCGTGTCTCGCAGATC | 60.803 | 60.000 | 0.00 | 0.00 | 38.35 | 2.75 |
281 | 282 | 3.424829 | CGAGATGATTTGTTGGAACCGTG | 60.425 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
282 | 283 | 2.742053 | CGAGATGATTTGTTGGAACCGT | 59.258 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
291 | 292 | 3.750371 | TGGAACCAACGAGATGATTTGT | 58.250 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
304 | 305 | 4.342378 | TCGATGGAAAAATGTTGGAACCAA | 59.658 | 37.500 | 1.83 | 1.83 | 0.00 | 3.67 |
347 | 348 | 0.040499 | AATAACCATGCCCCCACGTT | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
391 | 392 | 0.887387 | AATGCGCCAACGGTTGTAGT | 60.887 | 50.000 | 18.73 | 0.37 | 40.57 | 2.73 |
412 | 413 | 1.503542 | CTCGTTGATGGTTGCAGCC | 59.496 | 57.895 | 13.50 | 13.50 | 0.00 | 4.85 |
425 | 426 | 1.267806 | CATTGCAGCTTTGTCCTCGTT | 59.732 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
542 | 543 | 1.269831 | GGCCTAGTAGCTTCATCCGTG | 60.270 | 57.143 | 0.00 | 0.00 | 0.00 | 4.94 |
677 | 682 | 1.153784 | CAACGCAATCCATGGCCAC | 60.154 | 57.895 | 8.16 | 0.00 | 0.00 | 5.01 |
746 | 751 | 0.808755 | GTTTGATTAGGCCCACACCG | 59.191 | 55.000 | 0.00 | 0.00 | 33.69 | 4.94 |
774 | 779 | 1.519751 | CCGAATTTTGGCCGGTCACA | 61.520 | 55.000 | 9.15 | 0.00 | 38.55 | 3.58 |
818 | 823 | 7.499895 | ACTCTTTCGGTGTAAATTTTGTTAGGA | 59.500 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
823 | 828 | 8.680001 | ACTTAACTCTTTCGGTGTAAATTTTGT | 58.320 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
824 | 829 | 9.166126 | GACTTAACTCTTTCGGTGTAAATTTTG | 57.834 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
825 | 830 | 8.895737 | TGACTTAACTCTTTCGGTGTAAATTTT | 58.104 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
826 | 831 | 8.340443 | GTGACTTAACTCTTTCGGTGTAAATTT | 58.660 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
827 | 832 | 7.041576 | GGTGACTTAACTCTTTCGGTGTAAATT | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
828 | 833 | 6.426025 | GGTGACTTAACTCTTTCGGTGTAAAT | 59.574 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
829 | 834 | 5.754890 | GGTGACTTAACTCTTTCGGTGTAAA | 59.245 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
830 | 835 | 5.163426 | TGGTGACTTAACTCTTTCGGTGTAA | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
831 | 836 | 4.341806 | TGGTGACTTAACTCTTTCGGTGTA | 59.658 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
832 | 837 | 3.133362 | TGGTGACTTAACTCTTTCGGTGT | 59.867 | 43.478 | 0.00 | 0.00 | 0.00 | 4.16 |
833 | 838 | 3.493503 | GTGGTGACTTAACTCTTTCGGTG | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
834 | 839 | 3.133362 | TGTGGTGACTTAACTCTTTCGGT | 59.867 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
835 | 840 | 3.724374 | TGTGGTGACTTAACTCTTTCGG | 58.276 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
836 | 841 | 5.728351 | TTTGTGGTGACTTAACTCTTTCG | 57.272 | 39.130 | 0.00 | 0.00 | 0.00 | 3.46 |
837 | 842 | 7.973944 | ACAATTTTGTGGTGACTTAACTCTTTC | 59.026 | 33.333 | 0.00 | 0.00 | 40.49 | 2.62 |
838 | 843 | 7.836842 | ACAATTTTGTGGTGACTTAACTCTTT | 58.163 | 30.769 | 0.00 | 0.00 | 40.49 | 2.52 |
839 | 844 | 7.404671 | ACAATTTTGTGGTGACTTAACTCTT | 57.595 | 32.000 | 0.00 | 0.00 | 40.49 | 2.85 |
840 | 845 | 7.773690 | AGTACAATTTTGTGGTGACTTAACTCT | 59.226 | 33.333 | 6.21 | 0.00 | 42.31 | 3.24 |
841 | 846 | 7.927048 | AGTACAATTTTGTGGTGACTTAACTC | 58.073 | 34.615 | 6.21 | 0.00 | 42.31 | 3.01 |
842 | 847 | 7.875327 | AGTACAATTTTGTGGTGACTTAACT | 57.125 | 32.000 | 6.21 | 0.00 | 42.31 | 2.24 |
846 | 851 | 8.073768 | CGATTTAGTACAATTTTGTGGTGACTT | 58.926 | 33.333 | 6.21 | 0.00 | 42.31 | 3.01 |
847 | 852 | 7.581476 | CGATTTAGTACAATTTTGTGGTGACT | 58.419 | 34.615 | 6.21 | 4.40 | 42.31 | 3.41 |
848 | 853 | 6.304683 | GCGATTTAGTACAATTTTGTGGTGAC | 59.695 | 38.462 | 6.21 | 0.00 | 42.31 | 3.67 |
849 | 854 | 6.017026 | TGCGATTTAGTACAATTTTGTGGTGA | 60.017 | 34.615 | 6.21 | 0.00 | 42.31 | 4.02 |
850 | 855 | 6.146216 | TGCGATTTAGTACAATTTTGTGGTG | 58.854 | 36.000 | 6.21 | 0.00 | 42.31 | 4.17 |
851 | 856 | 6.320494 | TGCGATTTAGTACAATTTTGTGGT | 57.680 | 33.333 | 6.21 | 0.00 | 42.31 | 4.16 |
852 | 857 | 5.286082 | GCTGCGATTTAGTACAATTTTGTGG | 59.714 | 40.000 | 6.21 | 0.00 | 42.31 | 4.17 |
853 | 858 | 5.855925 | TGCTGCGATTTAGTACAATTTTGTG | 59.144 | 36.000 | 6.21 | 0.00 | 42.31 | 3.33 |
854 | 859 | 6.007936 | TGCTGCGATTTAGTACAATTTTGT | 57.992 | 33.333 | 1.08 | 1.08 | 44.86 | 2.83 |
855 | 860 | 5.512788 | CCTGCTGCGATTTAGTACAATTTTG | 59.487 | 40.000 | 0.00 | 0.00 | 0.00 | 2.44 |
856 | 861 | 5.414454 | TCCTGCTGCGATTTAGTACAATTTT | 59.586 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
857 | 862 | 4.941263 | TCCTGCTGCGATTTAGTACAATTT | 59.059 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
858 | 863 | 4.513442 | TCCTGCTGCGATTTAGTACAATT | 58.487 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
859 | 864 | 4.122776 | CTCCTGCTGCGATTTAGTACAAT | 58.877 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
860 | 865 | 3.521560 | CTCCTGCTGCGATTTAGTACAA | 58.478 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
861 | 866 | 2.738643 | GCTCCTGCTGCGATTTAGTACA | 60.739 | 50.000 | 0.00 | 0.00 | 36.03 | 2.90 |
862 | 867 | 1.861575 | GCTCCTGCTGCGATTTAGTAC | 59.138 | 52.381 | 0.00 | 0.00 | 36.03 | 2.73 |
863 | 868 | 1.202533 | GGCTCCTGCTGCGATTTAGTA | 60.203 | 52.381 | 0.00 | 0.00 | 39.59 | 1.82 |
864 | 869 | 0.462759 | GGCTCCTGCTGCGATTTAGT | 60.463 | 55.000 | 0.00 | 0.00 | 39.59 | 2.24 |
865 | 870 | 1.162800 | GGGCTCCTGCTGCGATTTAG | 61.163 | 60.000 | 0.00 | 0.00 | 39.59 | 1.85 |
866 | 871 | 1.153168 | GGGCTCCTGCTGCGATTTA | 60.153 | 57.895 | 0.00 | 0.00 | 39.59 | 1.40 |
867 | 872 | 2.439156 | GGGCTCCTGCTGCGATTT | 60.439 | 61.111 | 0.00 | 0.00 | 39.59 | 2.17 |
868 | 873 | 2.769652 | TTTGGGCTCCTGCTGCGATT | 62.770 | 55.000 | 0.00 | 0.00 | 39.59 | 3.34 |
869 | 874 | 2.563013 | ATTTGGGCTCCTGCTGCGAT | 62.563 | 55.000 | 0.00 | 0.00 | 39.59 | 4.58 |
870 | 875 | 2.769652 | AATTTGGGCTCCTGCTGCGA | 62.770 | 55.000 | 0.00 | 0.00 | 39.59 | 5.10 |
871 | 876 | 1.031571 | TAATTTGGGCTCCTGCTGCG | 61.032 | 55.000 | 0.00 | 0.00 | 39.59 | 5.18 |
872 | 877 | 1.185315 | TTAATTTGGGCTCCTGCTGC | 58.815 | 50.000 | 0.00 | 0.00 | 39.59 | 5.25 |
873 | 878 | 3.953612 | TGTATTAATTTGGGCTCCTGCTG | 59.046 | 43.478 | 0.00 | 0.00 | 39.59 | 4.41 |
874 | 879 | 3.954258 | GTGTATTAATTTGGGCTCCTGCT | 59.046 | 43.478 | 0.00 | 0.00 | 39.59 | 4.24 |
875 | 880 | 3.243068 | CGTGTATTAATTTGGGCTCCTGC | 60.243 | 47.826 | 0.00 | 0.00 | 38.76 | 4.85 |
876 | 881 | 3.945285 | ACGTGTATTAATTTGGGCTCCTG | 59.055 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
877 | 882 | 3.945285 | CACGTGTATTAATTTGGGCTCCT | 59.055 | 43.478 | 7.58 | 0.00 | 0.00 | 3.69 |
878 | 883 | 3.488553 | GCACGTGTATTAATTTGGGCTCC | 60.489 | 47.826 | 18.38 | 0.00 | 0.00 | 4.70 |
879 | 884 | 3.488553 | GGCACGTGTATTAATTTGGGCTC | 60.489 | 47.826 | 18.38 | 0.00 | 0.00 | 4.70 |
880 | 885 | 2.425668 | GGCACGTGTATTAATTTGGGCT | 59.574 | 45.455 | 18.38 | 0.00 | 0.00 | 5.19 |
881 | 886 | 2.425668 | AGGCACGTGTATTAATTTGGGC | 59.574 | 45.455 | 18.38 | 0.00 | 0.00 | 5.36 |
882 | 887 | 3.733684 | GCAGGCACGTGTATTAATTTGGG | 60.734 | 47.826 | 18.38 | 0.00 | 0.00 | 4.12 |
883 | 888 | 3.119673 | TGCAGGCACGTGTATTAATTTGG | 60.120 | 43.478 | 18.38 | 0.00 | 0.00 | 3.28 |
884 | 889 | 3.851403 | GTGCAGGCACGTGTATTAATTTG | 59.149 | 43.478 | 18.38 | 5.56 | 37.19 | 2.32 |
885 | 890 | 4.091453 | GTGCAGGCACGTGTATTAATTT | 57.909 | 40.909 | 18.38 | 0.00 | 37.19 | 1.82 |
886 | 891 | 3.757745 | GTGCAGGCACGTGTATTAATT | 57.242 | 42.857 | 18.38 | 0.00 | 37.19 | 1.40 |
897 | 902 | 0.108138 | AACCTATCGAGTGCAGGCAC | 60.108 | 55.000 | 16.29 | 16.29 | 46.50 | 5.01 |
898 | 903 | 0.175760 | GAACCTATCGAGTGCAGGCA | 59.824 | 55.000 | 0.00 | 0.00 | 32.31 | 4.75 |
899 | 904 | 0.175760 | TGAACCTATCGAGTGCAGGC | 59.824 | 55.000 | 0.00 | 0.00 | 32.31 | 4.85 |
900 | 905 | 1.204704 | TGTGAACCTATCGAGTGCAGG | 59.795 | 52.381 | 0.00 | 0.00 | 35.45 | 4.85 |
901 | 906 | 2.654749 | TGTGAACCTATCGAGTGCAG | 57.345 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
902 | 907 | 2.299013 | ACTTGTGAACCTATCGAGTGCA | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
903 | 908 | 2.960819 | ACTTGTGAACCTATCGAGTGC | 58.039 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
904 | 909 | 3.123621 | GCAACTTGTGAACCTATCGAGTG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
905 | 910 | 3.244078 | TGCAACTTGTGAACCTATCGAGT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
906 | 911 | 3.325870 | TGCAACTTGTGAACCTATCGAG | 58.674 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
907 | 912 | 3.394674 | TGCAACTTGTGAACCTATCGA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 3.59 |
908 | 913 | 4.154015 | TGATTGCAACTTGTGAACCTATCG | 59.846 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
909 | 914 | 5.627499 | TGATTGCAACTTGTGAACCTATC | 57.373 | 39.130 | 0.00 | 0.00 | 0.00 | 2.08 |
933 | 938 | 0.750182 | ACCCACGTTTCACCACTTGG | 60.750 | 55.000 | 0.00 | 0.00 | 36.13 | 3.61 |
934 | 939 | 0.380378 | CACCCACGTTTCACCACTTG | 59.620 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
935 | 940 | 1.381165 | GCACCCACGTTTCACCACTT | 61.381 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
936 | 941 | 1.822186 | GCACCCACGTTTCACCACT | 60.822 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
937 | 942 | 2.719354 | GCACCCACGTTTCACCAC | 59.281 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
938 | 943 | 2.871216 | TTCGCACCCACGTTTCACCA | 62.871 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
939 | 944 | 2.113131 | CTTCGCACCCACGTTTCACC | 62.113 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
940 | 945 | 1.278637 | CTTCGCACCCACGTTTCAC | 59.721 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
941 | 946 | 1.153329 | ACTTCGCACCCACGTTTCA | 60.153 | 52.632 | 0.00 | 0.00 | 0.00 | 2.69 |
942 | 947 | 0.878961 | AGACTTCGCACCCACGTTTC | 60.879 | 55.000 | 0.00 | 0.00 | 0.00 | 2.78 |
943 | 948 | 0.463116 | AAGACTTCGCACCCACGTTT | 60.463 | 50.000 | 0.00 | 0.00 | 0.00 | 3.60 |
944 | 949 | 1.145377 | AAGACTTCGCACCCACGTT | 59.855 | 52.632 | 0.00 | 0.00 | 0.00 | 3.99 |
945 | 950 | 1.594293 | CAAGACTTCGCACCCACGT | 60.594 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
946 | 951 | 0.670546 | ATCAAGACTTCGCACCCACG | 60.671 | 55.000 | 0.00 | 0.00 | 0.00 | 4.94 |
947 | 952 | 1.523758 | AATCAAGACTTCGCACCCAC | 58.476 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
948 | 953 | 2.565391 | TCTAATCAAGACTTCGCACCCA | 59.435 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
949 | 954 | 3.247006 | TCTAATCAAGACTTCGCACCC | 57.753 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
950 | 955 | 5.803020 | ATTTCTAATCAAGACTTCGCACC | 57.197 | 39.130 | 0.00 | 0.00 | 32.51 | 5.01 |
951 | 956 | 6.018669 | CCCTATTTCTAATCAAGACTTCGCAC | 60.019 | 42.308 | 0.00 | 0.00 | 32.51 | 5.34 |
952 | 957 | 6.049149 | CCCTATTTCTAATCAAGACTTCGCA | 58.951 | 40.000 | 0.00 | 0.00 | 32.51 | 5.10 |
953 | 958 | 5.467063 | CCCCTATTTCTAATCAAGACTTCGC | 59.533 | 44.000 | 0.00 | 0.00 | 32.51 | 4.70 |
954 | 959 | 6.583562 | ACCCCTATTTCTAATCAAGACTTCG | 58.416 | 40.000 | 0.00 | 0.00 | 32.51 | 3.79 |
955 | 960 | 8.809468 | AAACCCCTATTTCTAATCAAGACTTC | 57.191 | 34.615 | 0.00 | 0.00 | 32.51 | 3.01 |
956 | 961 | 9.025041 | CAAAACCCCTATTTCTAATCAAGACTT | 57.975 | 33.333 | 0.00 | 0.00 | 32.51 | 3.01 |
957 | 962 | 7.615757 | CCAAAACCCCTATTTCTAATCAAGACT | 59.384 | 37.037 | 0.00 | 0.00 | 32.51 | 3.24 |
958 | 963 | 7.396339 | ACCAAAACCCCTATTTCTAATCAAGAC | 59.604 | 37.037 | 0.00 | 0.00 | 32.51 | 3.01 |
959 | 964 | 7.475299 | ACCAAAACCCCTATTTCTAATCAAGA | 58.525 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
960 | 965 | 7.718334 | ACCAAAACCCCTATTTCTAATCAAG | 57.282 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
961 | 966 | 9.196139 | CATACCAAAACCCCTATTTCTAATCAA | 57.804 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
962 | 967 | 8.340757 | ACATACCAAAACCCCTATTTCTAATCA | 58.659 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
963 | 968 | 8.762481 | ACATACCAAAACCCCTATTTCTAATC | 57.238 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
964 | 969 | 8.566109 | AGACATACCAAAACCCCTATTTCTAAT | 58.434 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
965 | 970 | 7.935405 | AGACATACCAAAACCCCTATTTCTAA | 58.065 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
966 | 971 | 7.366191 | GGAGACATACCAAAACCCCTATTTCTA | 60.366 | 40.741 | 0.00 | 0.00 | 0.00 | 2.10 |
967 | 972 | 6.402981 | AGACATACCAAAACCCCTATTTCT | 57.597 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
968 | 973 | 5.593095 | GGAGACATACCAAAACCCCTATTTC | 59.407 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
969 | 974 | 5.255443 | AGGAGACATACCAAAACCCCTATTT | 59.745 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
970 | 975 | 4.794067 | AGGAGACATACCAAAACCCCTATT | 59.206 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
971 | 976 | 4.380791 | AGGAGACATACCAAAACCCCTAT | 58.619 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
972 | 977 | 3.810623 | AGGAGACATACCAAAACCCCTA | 58.189 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
973 | 978 | 2.644151 | AGGAGACATACCAAAACCCCT | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
974 | 979 | 3.089284 | CAAGGAGACATACCAAAACCCC | 58.911 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
975 | 980 | 3.763057 | ACAAGGAGACATACCAAAACCC | 58.237 | 45.455 | 0.00 | 0.00 | 0.00 | 4.11 |
976 | 981 | 5.766174 | TGTTACAAGGAGACATACCAAAACC | 59.234 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
977 | 982 | 6.870971 | TGTTACAAGGAGACATACCAAAAC | 57.129 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
978 | 983 | 9.005777 | GTTATGTTACAAGGAGACATACCAAAA | 57.994 | 33.333 | 0.00 | 0.00 | 36.35 | 2.44 |
979 | 984 | 8.380099 | AGTTATGTTACAAGGAGACATACCAAA | 58.620 | 33.333 | 0.00 | 0.00 | 36.35 | 3.28 |
980 | 985 | 7.913789 | AGTTATGTTACAAGGAGACATACCAA | 58.086 | 34.615 | 0.00 | 0.00 | 36.35 | 3.67 |
981 | 986 | 7.490657 | AGTTATGTTACAAGGAGACATACCA | 57.509 | 36.000 | 0.00 | 0.00 | 36.35 | 3.25 |
982 | 987 | 6.696148 | CGAGTTATGTTACAAGGAGACATACC | 59.304 | 42.308 | 0.00 | 0.00 | 36.35 | 2.73 |
983 | 988 | 7.478322 | TCGAGTTATGTTACAAGGAGACATAC | 58.522 | 38.462 | 0.00 | 0.00 | 36.35 | 2.39 |
984 | 989 | 7.338703 | ACTCGAGTTATGTTACAAGGAGACATA | 59.661 | 37.037 | 13.58 | 0.00 | 35.72 | 2.29 |
985 | 990 | 6.153000 | ACTCGAGTTATGTTACAAGGAGACAT | 59.847 | 38.462 | 13.58 | 0.00 | 37.70 | 3.06 |
986 | 991 | 5.475909 | ACTCGAGTTATGTTACAAGGAGACA | 59.524 | 40.000 | 13.58 | 0.00 | 0.00 | 3.41 |
987 | 992 | 5.952033 | ACTCGAGTTATGTTACAAGGAGAC | 58.048 | 41.667 | 13.58 | 0.00 | 0.00 | 3.36 |
988 | 993 | 7.876936 | ATACTCGAGTTATGTTACAAGGAGA | 57.123 | 36.000 | 25.44 | 0.00 | 0.00 | 3.71 |
989 | 994 | 8.928270 | AAATACTCGAGTTATGTTACAAGGAG | 57.072 | 34.615 | 25.44 | 0.00 | 0.00 | 3.69 |
990 | 995 | 9.146984 | CAAAATACTCGAGTTATGTTACAAGGA | 57.853 | 33.333 | 25.44 | 0.11 | 0.00 | 3.36 |
991 | 996 | 8.932791 | ACAAAATACTCGAGTTATGTTACAAGG | 58.067 | 33.333 | 25.44 | 6.93 | 0.00 | 3.61 |
995 | 1000 | 9.750882 | GGAAACAAAATACTCGAGTTATGTTAC | 57.249 | 33.333 | 25.44 | 18.58 | 0.00 | 2.50 |
996 | 1001 | 8.938906 | GGGAAACAAAATACTCGAGTTATGTTA | 58.061 | 33.333 | 25.44 | 4.38 | 0.00 | 2.41 |
997 | 1002 | 7.664318 | AGGGAAACAAAATACTCGAGTTATGTT | 59.336 | 33.333 | 25.44 | 23.06 | 0.00 | 2.71 |
998 | 1003 | 7.166167 | AGGGAAACAAAATACTCGAGTTATGT | 58.834 | 34.615 | 25.44 | 19.05 | 0.00 | 2.29 |
999 | 1004 | 7.611213 | AGGGAAACAAAATACTCGAGTTATG | 57.389 | 36.000 | 25.44 | 18.43 | 0.00 | 1.90 |
1000 | 1005 | 9.729281 | TTTAGGGAAACAAAATACTCGAGTTAT | 57.271 | 29.630 | 25.44 | 10.28 | 0.00 | 1.89 |
1001 | 1006 | 9.558396 | TTTTAGGGAAACAAAATACTCGAGTTA | 57.442 | 29.630 | 25.44 | 10.18 | 0.00 | 2.24 |
1002 | 1007 | 8.454570 | TTTTAGGGAAACAAAATACTCGAGTT | 57.545 | 30.769 | 25.44 | 8.91 | 0.00 | 3.01 |
1003 | 1008 | 8.454570 | TTTTTAGGGAAACAAAATACTCGAGT | 57.545 | 30.769 | 23.66 | 23.66 | 0.00 | 4.18 |
1096 | 1101 | 2.516930 | CATAGCAACCGCCAGGGG | 60.517 | 66.667 | 0.00 | 0.00 | 43.47 | 4.79 |
1100 | 1105 | 4.402528 | ACGCCATAGCAACCGCCA | 62.403 | 61.111 | 0.00 | 0.00 | 39.83 | 5.69 |
1101 | 1106 | 3.573491 | GACGCCATAGCAACCGCC | 61.573 | 66.667 | 0.00 | 0.00 | 39.83 | 6.13 |
1103 | 1108 | 2.461110 | GGTGACGCCATAGCAACCG | 61.461 | 63.158 | 0.00 | 0.00 | 39.83 | 4.44 |
1104 | 1109 | 1.078426 | AGGTGACGCCATAGCAACC | 60.078 | 57.895 | 7.99 | 0.00 | 40.61 | 3.77 |
1110 | 1115 | 0.175760 | GCTTCTCAGGTGACGCCATA | 59.824 | 55.000 | 7.99 | 0.00 | 40.61 | 2.74 |
1140 | 1145 | 1.006998 | CCCAATGTTTCCCCTGATCCA | 59.993 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1156 | 1161 | 2.029964 | GGCGTGAGACGAACCCAA | 59.970 | 61.111 | 0.00 | 0.00 | 46.05 | 4.12 |
1208 | 1213 | 0.103208 | CACCTCCTCCAGCGTATCAC | 59.897 | 60.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1311 | 1318 | 4.760047 | CTTCCCCGTGGAGCGTGG | 62.760 | 72.222 | 0.00 | 0.00 | 43.07 | 4.94 |
1321 | 1333 | 1.451387 | CCATCCGAAACCTTCCCCG | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 5.73 |
1496 | 1508 | 2.978156 | ACCTGGGCAATCTTTCTTCA | 57.022 | 45.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1522 | 1538 | 6.002082 | GGGGAAATTTAATCTAGCGGTACAT | 58.998 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1563 | 1579 | 5.646793 | GTGGAATCCAGGGAAGTTAACTTAC | 59.353 | 44.000 | 20.60 | 20.60 | 32.74 | 2.34 |
1578 | 1594 | 5.500234 | CCTGAAGAATTAGTGTGGAATCCA | 58.500 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1610 | 1626 | 1.534805 | CGTCCTCATCACCATCGACTG | 60.535 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
1618 | 1634 | 1.714794 | CAGTTGTCGTCCTCATCACC | 58.285 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1626 | 1645 | 1.210155 | GCCATTGCAGTTGTCGTCC | 59.790 | 57.895 | 0.00 | 0.00 | 37.47 | 4.79 |
1665 | 1699 | 5.810587 | GCAGATTATCTTCGTGTCTGGTTTA | 59.189 | 40.000 | 0.00 | 0.00 | 37.39 | 2.01 |
1672 | 1706 | 3.126831 | CTGGGCAGATTATCTTCGTGTC | 58.873 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1727 | 1762 | 1.833630 | GATGATCTCTGGGTGGTGACA | 59.166 | 52.381 | 0.00 | 0.00 | 38.70 | 3.58 |
1730 | 1765 | 2.616634 | CAGATGATCTCTGGGTGGTG | 57.383 | 55.000 | 12.00 | 0.00 | 46.52 | 4.17 |
1820 | 1855 | 3.265791 | CTTGCAGTACCTCTCAATCCAC | 58.734 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1859 | 1894 | 5.048083 | GGCCAGAATGTCATCAAACAGTTTA | 60.048 | 40.000 | 0.00 | 0.00 | 31.50 | 2.01 |
1991 | 2029 | 6.441222 | ACTGGTAGAAGTATCATGGGTCTTA | 58.559 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2746 | 2785 | 5.123344 | AGCTTGCTGGTTTAAGTTATAACCG | 59.877 | 40.000 | 12.05 | 13.06 | 45.40 | 4.44 |
2885 | 2924 | 9.571810 | GCATGTGACTTTAATGTCATTTTATCA | 57.428 | 29.630 | 22.61 | 16.11 | 46.77 | 2.15 |
2949 | 2988 | 5.643777 | AGTACAAACTCACATAAGACATGCC | 59.356 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3500 | 3735 | 3.567478 | AACTGGCCATACTGAAGGATC | 57.433 | 47.619 | 5.51 | 0.00 | 0.00 | 3.36 |
3581 | 3816 | 3.810941 | TCTTCACTTAAATCGCGGTTTGT | 59.189 | 39.130 | 26.87 | 14.43 | 0.00 | 2.83 |
3582 | 3817 | 4.084013 | AGTCTTCACTTAAATCGCGGTTTG | 60.084 | 41.667 | 26.87 | 13.75 | 0.00 | 2.93 |
3585 | 3820 | 3.251571 | GAGTCTTCACTTAAATCGCGGT | 58.748 | 45.455 | 6.13 | 0.00 | 30.63 | 5.68 |
3586 | 3821 | 2.279136 | CGAGTCTTCACTTAAATCGCGG | 59.721 | 50.000 | 6.13 | 0.00 | 30.63 | 6.46 |
3587 | 3822 | 3.168963 | TCGAGTCTTCACTTAAATCGCG | 58.831 | 45.455 | 0.00 | 0.00 | 30.63 | 5.87 |
3588 | 3823 | 4.207429 | GGATCGAGTCTTCACTTAAATCGC | 59.793 | 45.833 | 0.00 | 0.00 | 30.63 | 4.58 |
3589 | 3824 | 5.583495 | AGGATCGAGTCTTCACTTAAATCG | 58.417 | 41.667 | 0.00 | 0.00 | 30.63 | 3.34 |
3590 | 3825 | 7.036220 | TGAAGGATCGAGTCTTCACTTAAATC | 58.964 | 38.462 | 21.74 | 0.00 | 42.81 | 2.17 |
3591 | 3826 | 6.936279 | TGAAGGATCGAGTCTTCACTTAAAT | 58.064 | 36.000 | 21.74 | 0.00 | 42.81 | 1.40 |
3592 | 3827 | 6.015350 | ACTGAAGGATCGAGTCTTCACTTAAA | 60.015 | 38.462 | 21.74 | 7.20 | 42.81 | 1.52 |
3607 | 3842 | 2.206576 | ACTGGCCAAACTGAAGGATC | 57.793 | 50.000 | 7.01 | 0.00 | 0.00 | 3.36 |
3608 | 3843 | 2.683211 | AACTGGCCAAACTGAAGGAT | 57.317 | 45.000 | 7.01 | 0.00 | 0.00 | 3.24 |
3610 | 3845 | 3.541996 | AAAAACTGGCCAAACTGAAGG | 57.458 | 42.857 | 7.01 | 0.00 | 0.00 | 3.46 |
3629 | 3864 | 1.133823 | TCTTTGGAGCAGCCTCACAAA | 60.134 | 47.619 | 0.00 | 0.00 | 39.96 | 2.83 |
3740 | 4140 | 7.822822 | GGTTCAACTTAACACACTGGACTATAT | 59.177 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
3778 | 4178 | 0.799534 | GCACGCATTGAGCATGTTCC | 60.800 | 55.000 | 7.13 | 0.00 | 46.13 | 3.62 |
3970 | 4370 | 8.732531 | GGTAGTATAATACTGCTGAGTAGAAGG | 58.267 | 40.741 | 4.11 | 0.00 | 40.63 | 3.46 |
4068 | 4468 | 8.247666 | ACAACTGTTAAAACTACTACTCCTCT | 57.752 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
4069 | 4469 | 9.971922 | TTACAACTGTTAAAACTACTACTCCTC | 57.028 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
4088 | 4655 | 4.655963 | AGAGCATGGTCATGTTTACAACT | 58.344 | 39.130 | 25.71 | 0.00 | 40.80 | 3.16 |
4221 | 4872 | 5.149973 | TGTGCATATGCCAAAGTTTCAAT | 57.850 | 34.783 | 24.54 | 0.00 | 41.18 | 2.57 |
4309 | 4961 | 6.471146 | ATGAACAGCATTGAGGATATCCTAC | 58.529 | 40.000 | 24.58 | 17.14 | 39.55 | 3.18 |
4312 | 4964 | 5.311265 | TGATGAACAGCATTGAGGATATCC | 58.689 | 41.667 | 14.41 | 14.41 | 37.34 | 2.59 |
4315 | 4967 | 6.829811 | TGATTTGATGAACAGCATTGAGGATA | 59.170 | 34.615 | 0.00 | 0.00 | 37.34 | 2.59 |
4322 | 4974 | 5.336213 | GGTGTCTGATTTGATGAACAGCATT | 60.336 | 40.000 | 0.00 | 0.00 | 37.34 | 3.56 |
4324 | 4976 | 3.503363 | GGTGTCTGATTTGATGAACAGCA | 59.497 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
4336 | 4988 | 3.208747 | AGACGTTTTGGGTGTCTGATT | 57.791 | 42.857 | 0.00 | 0.00 | 41.21 | 2.57 |
4337 | 4989 | 2.930826 | AGACGTTTTGGGTGTCTGAT | 57.069 | 45.000 | 0.00 | 0.00 | 41.21 | 2.90 |
4338 | 4990 | 4.768448 | TCTATAGACGTTTTGGGTGTCTGA | 59.232 | 41.667 | 0.00 | 0.00 | 42.59 | 3.27 |
4339 | 4991 | 4.863131 | GTCTATAGACGTTTTGGGTGTCTG | 59.137 | 45.833 | 16.87 | 0.00 | 42.59 | 3.51 |
4340 | 4992 | 5.069501 | GTCTATAGACGTTTTGGGTGTCT | 57.930 | 43.478 | 16.87 | 0.00 | 44.63 | 3.41 |
4353 | 5005 | 1.658673 | CCGCCCCGTGTCTATAGAC | 59.341 | 63.158 | 23.53 | 23.53 | 44.97 | 2.59 |
4354 | 5006 | 2.198287 | GCCGCCCCGTGTCTATAGA | 61.198 | 63.158 | 0.00 | 0.00 | 0.00 | 1.98 |
4355 | 5007 | 2.338984 | GCCGCCCCGTGTCTATAG | 59.661 | 66.667 | 0.00 | 0.00 | 0.00 | 1.31 |
4356 | 5008 | 3.228759 | GGCCGCCCCGTGTCTATA | 61.229 | 66.667 | 0.00 | 0.00 | 0.00 | 1.31 |
4489 | 5159 | 8.817100 | CCTCTAAATGTTTTCCTTTTGTGTTTC | 58.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
4637 | 5308 | 0.839946 | GAGTAGACCATGTGCCCCAT | 59.160 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4681 | 5352 | 1.069258 | CGGGATCTAAAGGTCGGGC | 59.931 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.