Multiple sequence alignment - TraesCS3B01G169500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G169500 | chr3B | 100.000 | 2743 | 0 | 0 | 1 | 2743 | 169653990 | 169656732 | 0.000000e+00 | 5066.0 |
1 | TraesCS3B01G169500 | chr3B | 84.787 | 986 | 134 | 15 | 1 | 977 | 349293528 | 349292550 | 0.000000e+00 | 976.0 |
2 | TraesCS3B01G169500 | chr3B | 98.899 | 454 | 5 | 0 | 524 | 977 | 169648947 | 169649400 | 0.000000e+00 | 811.0 |
3 | TraesCS3B01G169500 | chr3B | 92.593 | 162 | 11 | 1 | 2413 | 2573 | 674990134 | 674989973 | 5.910000e-57 | 231.0 |
4 | TraesCS3B01G169500 | chr3B | 84.270 | 178 | 23 | 4 | 2570 | 2743 | 426003969 | 426004145 | 4.700000e-38 | 169.0 |
5 | TraesCS3B01G169500 | chr5B | 96.531 | 980 | 29 | 5 | 1 | 977 | 100046215 | 100047192 | 0.000000e+00 | 1616.0 |
6 | TraesCS3B01G169500 | chr5B | 95.184 | 976 | 45 | 2 | 1 | 975 | 10162801 | 10161827 | 0.000000e+00 | 1541.0 |
7 | TraesCS3B01G169500 | chr5B | 85.340 | 648 | 60 | 21 | 976 | 1617 | 50644440 | 50645058 | 2.980000e-179 | 638.0 |
8 | TraesCS3B01G169500 | chr5B | 87.410 | 556 | 46 | 13 | 976 | 1525 | 50932128 | 50931591 | 3.880000e-173 | 617.0 |
9 | TraesCS3B01G169500 | chr5B | 87.230 | 556 | 47 | 13 | 976 | 1525 | 38355914 | 38356451 | 1.810000e-171 | 612.0 |
10 | TraesCS3B01G169500 | chr5B | 92.593 | 162 | 11 | 1 | 2413 | 2573 | 411972027 | 411971866 | 5.910000e-57 | 231.0 |
11 | TraesCS3B01G169500 | chr5B | 88.462 | 104 | 6 | 3 | 2246 | 2345 | 38798253 | 38798354 | 1.330000e-23 | 121.0 |
12 | TraesCS3B01G169500 | chr5B | 94.737 | 57 | 2 | 1 | 2357 | 2413 | 606546834 | 606546889 | 1.350000e-13 | 87.9 |
13 | TraesCS3B01G169500 | chr4B | 94.990 | 978 | 47 | 2 | 1 | 977 | 429456378 | 429457354 | 0.000000e+00 | 1533.0 |
14 | TraesCS3B01G169500 | chr4B | 83.789 | 987 | 142 | 18 | 1 | 978 | 80976221 | 80977198 | 0.000000e+00 | 920.0 |
15 | TraesCS3B01G169500 | chr4B | 92.593 | 162 | 11 | 1 | 2413 | 2573 | 499224663 | 499224502 | 5.910000e-57 | 231.0 |
16 | TraesCS3B01G169500 | chr4B | 92.593 | 162 | 11 | 1 | 2413 | 2573 | 549841917 | 549841756 | 5.910000e-57 | 231.0 |
17 | TraesCS3B01G169500 | chr4B | 88.947 | 190 | 16 | 5 | 2393 | 2580 | 532434983 | 532435169 | 2.120000e-56 | 230.0 |
18 | TraesCS3B01G169500 | chr3D | 89.492 | 885 | 55 | 20 | 977 | 1845 | 116077197 | 116078059 | 0.000000e+00 | 1085.0 |
19 | TraesCS3B01G169500 | chr3D | 86.077 | 984 | 108 | 20 | 3 | 978 | 15037538 | 15036576 | 0.000000e+00 | 1031.0 |
20 | TraesCS3B01G169500 | chr3D | 93.884 | 327 | 14 | 3 | 1958 | 2283 | 116078290 | 116078611 | 3.170000e-134 | 488.0 |
21 | TraesCS3B01G169500 | chr3D | 87.640 | 178 | 11 | 6 | 2570 | 2743 | 116078639 | 116078809 | 2.150000e-46 | 196.0 |
22 | TraesCS3B01G169500 | chr3D | 87.387 | 111 | 10 | 4 | 2573 | 2680 | 313282295 | 313282186 | 1.030000e-24 | 124.0 |
23 | TraesCS3B01G169500 | chr4D | 86.451 | 989 | 111 | 19 | 1 | 978 | 32024942 | 32023966 | 0.000000e+00 | 1062.0 |
24 | TraesCS3B01G169500 | chr7B | 84.467 | 985 | 140 | 13 | 1 | 977 | 60072300 | 60071321 | 0.000000e+00 | 959.0 |
25 | TraesCS3B01G169500 | chr7B | 90.395 | 177 | 16 | 1 | 2398 | 2573 | 736726791 | 736726967 | 5.910000e-57 | 231.0 |
26 | TraesCS3B01G169500 | chr5A | 81.029 | 991 | 161 | 26 | 1 | 978 | 608614346 | 608613370 | 0.000000e+00 | 763.0 |
27 | TraesCS3B01G169500 | chr5A | 85.823 | 656 | 57 | 22 | 984 | 1622 | 38016803 | 38016167 | 0.000000e+00 | 664.0 |
28 | TraesCS3B01G169500 | chr5A | 86.879 | 564 | 49 | 13 | 972 | 1525 | 31219138 | 31218590 | 2.340000e-170 | 608.0 |
29 | TraesCS3B01G169500 | chr5A | 86.879 | 564 | 49 | 13 | 972 | 1525 | 31267809 | 31268357 | 2.340000e-170 | 608.0 |
30 | TraesCS3B01G169500 | chr5A | 85.714 | 140 | 16 | 3 | 2172 | 2307 | 31216693 | 31216554 | 7.920000e-31 | 145.0 |
31 | TraesCS3B01G169500 | chr5A | 86.131 | 137 | 15 | 3 | 2172 | 2304 | 31270254 | 31270390 | 7.920000e-31 | 145.0 |
32 | TraesCS3B01G169500 | chr5A | 94.737 | 57 | 3 | 0 | 2357 | 2413 | 613931111 | 613931167 | 3.760000e-14 | 89.8 |
33 | TraesCS3B01G169500 | chr5D | 85.909 | 660 | 59 | 20 | 976 | 1619 | 48450284 | 48450925 | 0.000000e+00 | 673.0 |
34 | TraesCS3B01G169500 | chr5D | 85.714 | 665 | 59 | 21 | 976 | 1622 | 48048025 | 48047379 | 0.000000e+00 | 669.0 |
35 | TraesCS3B01G169500 | chr5D | 85.849 | 106 | 7 | 6 | 2246 | 2344 | 42961757 | 42961861 | 3.740000e-19 | 106.0 |
36 | TraesCS3B01G169500 | chr7D | 95.062 | 162 | 5 | 3 | 2414 | 2573 | 205540857 | 205540697 | 4.530000e-63 | 252.0 |
37 | TraesCS3B01G169500 | chr2B | 90.395 | 177 | 16 | 1 | 2398 | 2573 | 206593543 | 206593719 | 5.910000e-57 | 231.0 |
38 | TraesCS3B01G169500 | chrUn | 91.975 | 162 | 12 | 1 | 2413 | 2573 | 86671478 | 86671317 | 2.750000e-55 | 226.0 |
39 | TraesCS3B01G169500 | chr6B | 83.516 | 182 | 21 | 6 | 2570 | 2743 | 127042152 | 127042332 | 7.860000e-36 | 161.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G169500 | chr3B | 169653990 | 169656732 | 2742 | False | 5066.000000 | 5066 | 100.000000 | 1 | 2743 | 1 | chr3B.!!$F2 | 2742 |
1 | TraesCS3B01G169500 | chr3B | 349292550 | 349293528 | 978 | True | 976.000000 | 976 | 84.787000 | 1 | 977 | 1 | chr3B.!!$R1 | 976 |
2 | TraesCS3B01G169500 | chr5B | 100046215 | 100047192 | 977 | False | 1616.000000 | 1616 | 96.531000 | 1 | 977 | 1 | chr5B.!!$F4 | 976 |
3 | TraesCS3B01G169500 | chr5B | 10161827 | 10162801 | 974 | True | 1541.000000 | 1541 | 95.184000 | 1 | 975 | 1 | chr5B.!!$R1 | 974 |
4 | TraesCS3B01G169500 | chr5B | 50644440 | 50645058 | 618 | False | 638.000000 | 638 | 85.340000 | 976 | 1617 | 1 | chr5B.!!$F3 | 641 |
5 | TraesCS3B01G169500 | chr5B | 50931591 | 50932128 | 537 | True | 617.000000 | 617 | 87.410000 | 976 | 1525 | 1 | chr5B.!!$R2 | 549 |
6 | TraesCS3B01G169500 | chr5B | 38355914 | 38356451 | 537 | False | 612.000000 | 612 | 87.230000 | 976 | 1525 | 1 | chr5B.!!$F1 | 549 |
7 | TraesCS3B01G169500 | chr4B | 429456378 | 429457354 | 976 | False | 1533.000000 | 1533 | 94.990000 | 1 | 977 | 1 | chr4B.!!$F2 | 976 |
8 | TraesCS3B01G169500 | chr4B | 80976221 | 80977198 | 977 | False | 920.000000 | 920 | 83.789000 | 1 | 978 | 1 | chr4B.!!$F1 | 977 |
9 | TraesCS3B01G169500 | chr3D | 15036576 | 15037538 | 962 | True | 1031.000000 | 1031 | 86.077000 | 3 | 978 | 1 | chr3D.!!$R1 | 975 |
10 | TraesCS3B01G169500 | chr3D | 116077197 | 116078809 | 1612 | False | 589.666667 | 1085 | 90.338667 | 977 | 2743 | 3 | chr3D.!!$F1 | 1766 |
11 | TraesCS3B01G169500 | chr4D | 32023966 | 32024942 | 976 | True | 1062.000000 | 1062 | 86.451000 | 1 | 978 | 1 | chr4D.!!$R1 | 977 |
12 | TraesCS3B01G169500 | chr7B | 60071321 | 60072300 | 979 | True | 959.000000 | 959 | 84.467000 | 1 | 977 | 1 | chr7B.!!$R1 | 976 |
13 | TraesCS3B01G169500 | chr5A | 608613370 | 608614346 | 976 | True | 763.000000 | 763 | 81.029000 | 1 | 978 | 1 | chr5A.!!$R2 | 977 |
14 | TraesCS3B01G169500 | chr5A | 38016167 | 38016803 | 636 | True | 664.000000 | 664 | 85.823000 | 984 | 1622 | 1 | chr5A.!!$R1 | 638 |
15 | TraesCS3B01G169500 | chr5A | 31216554 | 31219138 | 2584 | True | 376.500000 | 608 | 86.296500 | 972 | 2307 | 2 | chr5A.!!$R3 | 1335 |
16 | TraesCS3B01G169500 | chr5A | 31267809 | 31270390 | 2581 | False | 376.500000 | 608 | 86.505000 | 972 | 2304 | 2 | chr5A.!!$F2 | 1332 |
17 | TraesCS3B01G169500 | chr5D | 48450284 | 48450925 | 641 | False | 673.000000 | 673 | 85.909000 | 976 | 1619 | 1 | chr5D.!!$F2 | 643 |
18 | TraesCS3B01G169500 | chr5D | 48047379 | 48048025 | 646 | True | 669.000000 | 669 | 85.714000 | 976 | 1622 | 1 | chr5D.!!$R1 | 646 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
658 | 661 | 1.301874 | CGCCGTTTAAGGGTGTCCA | 60.302 | 57.895 | 8.86 | 0.0 | 34.83 | 4.02 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1768 | 1864 | 0.689055 | ACATGAACAGAGGCAGAGCA | 59.311 | 50.0 | 0.0 | 0.0 | 0.0 | 4.26 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
658 | 661 | 1.301874 | CGCCGTTTAAGGGTGTCCA | 60.302 | 57.895 | 8.86 | 0.00 | 34.83 | 4.02 |
956 | 967 | 5.575606 | CCAATTGTGTGCAAATTCAGAGATC | 59.424 | 40.000 | 4.43 | 0.00 | 38.21 | 2.75 |
1309 | 1327 | 4.728102 | CCGCGTCGGCCTACAACA | 62.728 | 66.667 | 8.31 | 0.00 | 41.17 | 3.33 |
1310 | 1331 | 2.508439 | CGCGTCGGCCTACAACAT | 60.508 | 61.111 | 8.31 | 0.00 | 35.02 | 2.71 |
1402 | 1423 | 1.153229 | GTCTACATGCCGTTCCCCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
1403 | 1424 | 2.203015 | CTACATGCCGTTCCCCCG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
1404 | 1425 | 2.684294 | TACATGCCGTTCCCCCGA | 60.684 | 61.111 | 0.00 | 0.00 | 0.00 | 5.14 |
1405 | 1426 | 2.918230 | CTACATGCCGTTCCCCCGAC | 62.918 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1474 | 1498 | 2.848679 | TCCAGACCAGCACCTGCA | 60.849 | 61.111 | 0.00 | 0.00 | 45.16 | 4.41 |
1518 | 1542 | 1.760086 | CCCCTCCTCAGCGATGACT | 60.760 | 63.158 | 0.00 | 0.00 | 0.00 | 3.41 |
1584 | 1622 | 7.117523 | AGTCTTCTCGATCATTTTGTTCTTCTG | 59.882 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
1607 | 1647 | 5.183713 | TGTGTTTCTAGCCATGAAGGATTTG | 59.816 | 40.000 | 0.00 | 0.00 | 41.22 | 2.32 |
1610 | 1650 | 5.372343 | TTCTAGCCATGAAGGATTTGCTA | 57.628 | 39.130 | 0.00 | 0.00 | 41.22 | 3.49 |
1624 | 1664 | 6.562518 | AGGATTTGCTACTAGTAGTTCGAAC | 58.437 | 40.000 | 26.76 | 20.71 | 35.65 | 3.95 |
1633 | 1673 | 5.960113 | ACTAGTAGTTCGAACGAGAGACTA | 58.040 | 41.667 | 21.87 | 20.28 | 0.00 | 2.59 |
1635 | 1675 | 5.070770 | AGTAGTTCGAACGAGAGACTAGA | 57.929 | 43.478 | 21.87 | 0.00 | 0.00 | 2.43 |
1661 | 1701 | 2.350484 | CGTATCGTGCCGTGATGAGTAT | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
1662 | 1702 | 2.140065 | ATCGTGCCGTGATGAGTATG | 57.860 | 50.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1664 | 1704 | 2.018515 | TCGTGCCGTGATGAGTATGTA | 58.981 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
1666 | 1706 | 3.067601 | TCGTGCCGTGATGAGTATGTAAT | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
1667 | 1707 | 3.182372 | CGTGCCGTGATGAGTATGTAATG | 59.818 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
1668 | 1708 | 4.119862 | GTGCCGTGATGAGTATGTAATGT | 58.880 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
1669 | 1709 | 4.025730 | GTGCCGTGATGAGTATGTAATGTG | 60.026 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
1672 | 1712 | 5.276868 | GCCGTGATGAGTATGTAATGTGTTC | 60.277 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1673 | 1713 | 6.042777 | CCGTGATGAGTATGTAATGTGTTCT | 58.957 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1674 | 1714 | 7.200455 | CCGTGATGAGTATGTAATGTGTTCTA | 58.800 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
1676 | 1716 | 7.915923 | CGTGATGAGTATGTAATGTGTTCTACT | 59.084 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1677 | 1717 | 9.239002 | GTGATGAGTATGTAATGTGTTCTACTC | 57.761 | 37.037 | 0.00 | 0.00 | 36.96 | 2.59 |
1678 | 1718 | 8.414003 | TGATGAGTATGTAATGTGTTCTACTCC | 58.586 | 37.037 | 0.00 | 0.00 | 36.06 | 3.85 |
1679 | 1719 | 7.956328 | TGAGTATGTAATGTGTTCTACTCCT | 57.044 | 36.000 | 0.00 | 0.00 | 36.06 | 3.69 |
1681 | 1721 | 7.113658 | AGTATGTAATGTGTTCTACTCCTGG | 57.886 | 40.000 | 0.00 | 0.00 | 0.00 | 4.45 |
1682 | 1722 | 6.668283 | AGTATGTAATGTGTTCTACTCCTGGT | 59.332 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
1683 | 1723 | 5.401531 | TGTAATGTGTTCTACTCCTGGTC | 57.598 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1684 | 1724 | 4.836175 | TGTAATGTGTTCTACTCCTGGTCA | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
1685 | 1725 | 3.963428 | ATGTGTTCTACTCCTGGTCAC | 57.037 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
1686 | 1726 | 1.611977 | TGTGTTCTACTCCTGGTCACG | 59.388 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1691 | 1731 | 2.022195 | TCTACTCCTGGTCACGTATGC | 58.978 | 52.381 | 0.00 | 0.00 | 0.00 | 3.14 |
1739 | 1835 | 5.389859 | TTTGTCCAGTATTGCTTGAATGG | 57.610 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
1749 | 1845 | 8.199449 | CAGTATTGCTTGAATGGATTTTGGTAT | 58.801 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
1766 | 1862 | 9.826574 | ATTTTGGTATGAATTTGATTGATCTGG | 57.173 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
1768 | 1864 | 7.959658 | TGGTATGAATTTGATTGATCTGGTT | 57.040 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1770 | 1866 | 6.698766 | GGTATGAATTTGATTGATCTGGTTGC | 59.301 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
1792 | 1899 | 1.462283 | CTGCCTCTGTTCATGTTCGTG | 59.538 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1855 | 1963 | 2.484264 | GCTTGTGCTAATTTCGTCCTGT | 59.516 | 45.455 | 0.00 | 0.00 | 36.03 | 4.00 |
1863 | 1971 | 4.511454 | GCTAATTTCGTCCTGTATGCATCA | 59.489 | 41.667 | 0.19 | 0.10 | 0.00 | 3.07 |
1865 | 1973 | 3.885724 | TTTCGTCCTGTATGCATCAGA | 57.114 | 42.857 | 20.83 | 5.93 | 35.20 | 3.27 |
1869 | 1977 | 3.255888 | TCGTCCTGTATGCATCAGATACC | 59.744 | 47.826 | 20.83 | 9.30 | 35.20 | 2.73 |
1870 | 1978 | 3.005791 | CGTCCTGTATGCATCAGATACCA | 59.994 | 47.826 | 20.83 | 2.76 | 35.20 | 3.25 |
1875 | 1983 | 7.826252 | GTCCTGTATGCATCAGATACCATTTAT | 59.174 | 37.037 | 20.83 | 0.00 | 35.20 | 1.40 |
1876 | 1984 | 8.385491 | TCCTGTATGCATCAGATACCATTTATT | 58.615 | 33.333 | 20.83 | 0.00 | 35.20 | 1.40 |
1877 | 1985 | 9.671279 | CCTGTATGCATCAGATACCATTTATTA | 57.329 | 33.333 | 20.83 | 0.00 | 35.20 | 0.98 |
1893 | 2001 | 9.146586 | ACCATTTATTAATATGCATGGTTCACT | 57.853 | 29.630 | 19.57 | 6.16 | 41.33 | 3.41 |
1894 | 2002 | 9.985730 | CCATTTATTAATATGCATGGTTCACTT | 57.014 | 29.630 | 10.16 | 0.00 | 0.00 | 3.16 |
1897 | 2005 | 8.870160 | TTATTAATATGCATGGTTCACTTTGC | 57.130 | 30.769 | 10.16 | 0.00 | 35.67 | 3.68 |
1898 | 2006 | 6.528537 | TTAATATGCATGGTTCACTTTGCT | 57.471 | 33.333 | 10.16 | 0.00 | 36.10 | 3.91 |
1899 | 2007 | 5.410355 | AATATGCATGGTTCACTTTGCTT | 57.590 | 34.783 | 10.16 | 0.00 | 36.10 | 3.91 |
1900 | 2008 | 2.798976 | TGCATGGTTCACTTTGCTTC | 57.201 | 45.000 | 0.00 | 0.00 | 36.10 | 3.86 |
1901 | 2009 | 1.340889 | TGCATGGTTCACTTTGCTTCC | 59.659 | 47.619 | 0.00 | 0.00 | 36.10 | 3.46 |
1902 | 2010 | 1.340889 | GCATGGTTCACTTTGCTTCCA | 59.659 | 47.619 | 0.00 | 0.00 | 32.41 | 3.53 |
1903 | 2011 | 2.608752 | GCATGGTTCACTTTGCTTCCAG | 60.609 | 50.000 | 0.00 | 0.00 | 32.41 | 3.86 |
1904 | 2012 | 2.727123 | TGGTTCACTTTGCTTCCAGA | 57.273 | 45.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1905 | 2013 | 3.228188 | TGGTTCACTTTGCTTCCAGAT | 57.772 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
1906 | 2014 | 3.565307 | TGGTTCACTTTGCTTCCAGATT | 58.435 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1908 | 2016 | 5.324409 | TGGTTCACTTTGCTTCCAGATTAT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
1915 | 2023 | 6.587608 | CACTTTGCTTCCAGATTATTTCCAAC | 59.412 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
1918 | 2026 | 6.271488 | TGCTTCCAGATTATTTCCAACTTG | 57.729 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1924 | 2032 | 7.110155 | TCCAGATTATTTCCAACTTGTACTCC | 58.890 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
1928 | 2036 | 8.047310 | AGATTATTTCCAACTTGTACTCCGAAT | 58.953 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
1929 | 2037 | 7.605410 | TTATTTCCAACTTGTACTCCGAATC | 57.395 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1930 | 2038 | 4.884668 | TTCCAACTTGTACTCCGAATCT | 57.115 | 40.909 | 0.00 | 0.00 | 0.00 | 2.40 |
1935 | 2043 | 5.107065 | CCAACTTGTACTCCGAATCTTGAAC | 60.107 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1936 | 2044 | 5.470047 | ACTTGTACTCCGAATCTTGAACT | 57.530 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1937 | 2045 | 5.230942 | ACTTGTACTCCGAATCTTGAACTG | 58.769 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1938 | 2046 | 3.585862 | TGTACTCCGAATCTTGAACTGC | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1939 | 2047 | 2.839486 | ACTCCGAATCTTGAACTGCA | 57.161 | 45.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1940 | 2048 | 3.340814 | ACTCCGAATCTTGAACTGCAT | 57.659 | 42.857 | 0.00 | 0.00 | 0.00 | 3.96 |
1941 | 2049 | 3.005554 | ACTCCGAATCTTGAACTGCATG | 58.994 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
1942 | 2050 | 3.005554 | CTCCGAATCTTGAACTGCATGT | 58.994 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
1943 | 2051 | 4.183865 | CTCCGAATCTTGAACTGCATGTA | 58.816 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
1944 | 2052 | 4.574892 | TCCGAATCTTGAACTGCATGTAA | 58.425 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
1945 | 2053 | 5.185454 | TCCGAATCTTGAACTGCATGTAAT | 58.815 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
2033 | 2830 | 6.509418 | TTTTGTGCTAGTTTCTGTGAAGTT | 57.491 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2037 | 2834 | 7.046292 | TGTGCTAGTTTCTGTGAAGTTACTA | 57.954 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2048 | 2845 | 8.503458 | TCTGTGAAGTTACTATGTAGGAGTAC | 57.497 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
2123 | 3534 | 1.408969 | AAATTGTCGTGGGGCAAGTT | 58.591 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
2140 | 3551 | 4.515567 | GCAAGTTTCTGCCAAGTTACTAGT | 59.484 | 41.667 | 0.00 | 0.00 | 36.25 | 2.57 |
2214 | 3667 | 7.861630 | TGCAATTTACAGTTAGTCAAGTTCTC | 58.138 | 34.615 | 0.00 | 0.00 | 0.00 | 2.87 |
2285 | 3742 | 0.729116 | GCTCGCTTACATGCATGTGT | 59.271 | 50.000 | 36.72 | 19.43 | 41.89 | 3.72 |
2289 | 3746 | 4.229096 | CTCGCTTACATGCATGTGTTTTT | 58.771 | 39.130 | 36.72 | 15.60 | 41.89 | 1.94 |
2290 | 3747 | 4.225984 | TCGCTTACATGCATGTGTTTTTC | 58.774 | 39.130 | 36.72 | 19.73 | 41.89 | 2.29 |
2295 | 3752 | 4.566545 | ACATGCATGTGTTTTTCGAGAA | 57.433 | 36.364 | 30.92 | 0.00 | 40.03 | 2.87 |
2304 | 3761 | 4.574828 | TGTGTTTTTCGAGAAGAGGAAAGG | 59.425 | 41.667 | 0.00 | 0.00 | 34.03 | 3.11 |
2307 | 3764 | 5.527582 | TGTTTTTCGAGAAGAGGAAAGGAAG | 59.472 | 40.000 | 0.00 | 0.00 | 34.03 | 3.46 |
2308 | 3765 | 4.957684 | TTTCGAGAAGAGGAAAGGAAGT | 57.042 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
2309 | 3766 | 3.944055 | TCGAGAAGAGGAAAGGAAGTG | 57.056 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
2310 | 3767 | 2.028930 | TCGAGAAGAGGAAAGGAAGTGC | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2311 | 3768 | 2.289072 | CGAGAAGAGGAAAGGAAGTGCA | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2312 | 3769 | 3.333804 | GAGAAGAGGAAAGGAAGTGCAG | 58.666 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2313 | 3770 | 2.975489 | AGAAGAGGAAAGGAAGTGCAGA | 59.025 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
2314 | 3771 | 3.007831 | AGAAGAGGAAAGGAAGTGCAGAG | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
2315 | 3772 | 2.614259 | AGAGGAAAGGAAGTGCAGAGA | 58.386 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
2316 | 3773 | 2.975489 | AGAGGAAAGGAAGTGCAGAGAA | 59.025 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
2317 | 3774 | 3.392616 | AGAGGAAAGGAAGTGCAGAGAAA | 59.607 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2318 | 3775 | 4.137543 | GAGGAAAGGAAGTGCAGAGAAAA | 58.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
2319 | 3776 | 4.536765 | AGGAAAGGAAGTGCAGAGAAAAA | 58.463 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
2320 | 3777 | 5.143369 | AGGAAAGGAAGTGCAGAGAAAAAT | 58.857 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2321 | 3778 | 5.010415 | AGGAAAGGAAGTGCAGAGAAAAATG | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
2322 | 3779 | 5.221322 | GGAAAGGAAGTGCAGAGAAAAATGT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2323 | 3780 | 5.859205 | AAGGAAGTGCAGAGAAAAATGTT | 57.141 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
2324 | 3781 | 5.444663 | AGGAAGTGCAGAGAAAAATGTTC | 57.555 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
2325 | 3782 | 4.889409 | AGGAAGTGCAGAGAAAAATGTTCA | 59.111 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
2326 | 3783 | 5.009410 | AGGAAGTGCAGAGAAAAATGTTCAG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2327 | 3784 | 5.009010 | GGAAGTGCAGAGAAAAATGTTCAGA | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2328 | 3785 | 6.294397 | GGAAGTGCAGAGAAAAATGTTCAGAT | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2329 | 3786 | 6.645790 | AGTGCAGAGAAAAATGTTCAGATT | 57.354 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2330 | 3787 | 7.750229 | AGTGCAGAGAAAAATGTTCAGATTA | 57.250 | 32.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2331 | 3788 | 7.588512 | AGTGCAGAGAAAAATGTTCAGATTAC | 58.411 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
2332 | 3789 | 7.229306 | AGTGCAGAGAAAAATGTTCAGATTACA | 59.771 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2333 | 3790 | 8.025445 | GTGCAGAGAAAAATGTTCAGATTACAT | 58.975 | 33.333 | 0.00 | 0.00 | 37.82 | 2.29 |
2334 | 3791 | 8.024865 | TGCAGAGAAAAATGTTCAGATTACATG | 58.975 | 33.333 | 0.00 | 0.00 | 36.41 | 3.21 |
2335 | 3792 | 8.239314 | GCAGAGAAAAATGTTCAGATTACATGA | 58.761 | 33.333 | 0.00 | 0.00 | 36.41 | 3.07 |
2339 | 3796 | 9.865321 | AGAAAAATGTTCAGATTACATGAATGG | 57.135 | 29.630 | 0.00 | 0.00 | 38.81 | 3.16 |
2340 | 3797 | 9.859427 | GAAAAATGTTCAGATTACATGAATGGA | 57.141 | 29.630 | 0.00 | 0.00 | 38.81 | 3.41 |
2341 | 3798 | 9.643693 | AAAAATGTTCAGATTACATGAATGGAC | 57.356 | 29.630 | 0.00 | 0.00 | 38.81 | 4.02 |
2342 | 3799 | 7.943079 | AATGTTCAGATTACATGAATGGACA | 57.057 | 32.000 | 0.00 | 1.98 | 38.81 | 4.02 |
2343 | 3800 | 6.741992 | TGTTCAGATTACATGAATGGACAC | 57.258 | 37.500 | 0.00 | 0.00 | 38.81 | 3.67 |
2344 | 3801 | 6.237154 | TGTTCAGATTACATGAATGGACACA | 58.763 | 36.000 | 0.00 | 0.00 | 38.81 | 3.72 |
2345 | 3802 | 6.714356 | TGTTCAGATTACATGAATGGACACAA | 59.286 | 34.615 | 0.00 | 0.00 | 38.81 | 3.33 |
2346 | 3803 | 6.990341 | TCAGATTACATGAATGGACACAAG | 57.010 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2347 | 3804 | 5.882000 | TCAGATTACATGAATGGACACAAGG | 59.118 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2348 | 3805 | 5.882000 | CAGATTACATGAATGGACACAAGGA | 59.118 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2349 | 3806 | 6.375174 | CAGATTACATGAATGGACACAAGGAA | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
2350 | 3807 | 6.947733 | AGATTACATGAATGGACACAAGGAAA | 59.052 | 34.615 | 0.00 | 0.00 | 0.00 | 3.13 |
2351 | 3808 | 6.968263 | TTACATGAATGGACACAAGGAAAA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2352 | 3809 | 7.537596 | TTACATGAATGGACACAAGGAAAAT | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2353 | 3810 | 8.642935 | TTACATGAATGGACACAAGGAAAATA | 57.357 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
2354 | 3811 | 7.722949 | ACATGAATGGACACAAGGAAAATAT | 57.277 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2355 | 3812 | 7.549839 | ACATGAATGGACACAAGGAAAATATG | 58.450 | 34.615 | 0.00 | 0.00 | 0.00 | 1.78 |
2356 | 3813 | 5.964758 | TGAATGGACACAAGGAAAATATGC | 58.035 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
2357 | 3814 | 5.716228 | TGAATGGACACAAGGAAAATATGCT | 59.284 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2358 | 3815 | 6.211184 | TGAATGGACACAAGGAAAATATGCTT | 59.789 | 34.615 | 0.00 | 0.00 | 40.83 | 3.91 |
2359 | 3816 | 6.610075 | ATGGACACAAGGAAAATATGCTTT | 57.390 | 33.333 | 0.00 | 0.00 | 37.65 | 3.51 |
2360 | 3817 | 5.782047 | TGGACACAAGGAAAATATGCTTTG | 58.218 | 37.500 | 0.00 | 0.00 | 37.65 | 2.77 |
2361 | 3818 | 5.170748 | GGACACAAGGAAAATATGCTTTGG | 58.829 | 41.667 | 0.00 | 0.00 | 37.65 | 3.28 |
2362 | 3819 | 5.047377 | GGACACAAGGAAAATATGCTTTGGA | 60.047 | 40.000 | 0.00 | 0.00 | 37.65 | 3.53 |
2363 | 3820 | 6.418057 | ACACAAGGAAAATATGCTTTGGAA | 57.582 | 33.333 | 0.00 | 0.00 | 37.65 | 3.53 |
2364 | 3821 | 6.223120 | ACACAAGGAAAATATGCTTTGGAAC | 58.777 | 36.000 | 0.00 | 0.00 | 37.65 | 3.62 |
2365 | 3822 | 6.183360 | ACACAAGGAAAATATGCTTTGGAACA | 60.183 | 34.615 | 0.00 | 0.00 | 37.65 | 3.18 |
2366 | 3823 | 6.875195 | CACAAGGAAAATATGCTTTGGAACAT | 59.125 | 34.615 | 0.00 | 0.00 | 37.65 | 2.71 |
2367 | 3824 | 6.875195 | ACAAGGAAAATATGCTTTGGAACATG | 59.125 | 34.615 | 0.00 | 0.00 | 37.65 | 3.21 |
2368 | 3825 | 5.981174 | AGGAAAATATGCTTTGGAACATGG | 58.019 | 37.500 | 0.00 | 0.00 | 39.30 | 3.66 |
2369 | 3826 | 5.484998 | AGGAAAATATGCTTTGGAACATGGT | 59.515 | 36.000 | 0.00 | 0.00 | 39.30 | 3.55 |
2370 | 3827 | 5.581874 | GGAAAATATGCTTTGGAACATGGTG | 59.418 | 40.000 | 0.00 | 0.00 | 39.30 | 4.17 |
2371 | 3828 | 4.741321 | AATATGCTTTGGAACATGGTGG | 57.259 | 40.909 | 0.00 | 0.00 | 39.30 | 4.61 |
2372 | 3829 | 2.014010 | ATGCTTTGGAACATGGTGGT | 57.986 | 45.000 | 0.00 | 0.00 | 39.30 | 4.16 |
2373 | 3830 | 2.666272 | TGCTTTGGAACATGGTGGTA | 57.334 | 45.000 | 0.00 | 0.00 | 39.30 | 3.25 |
2374 | 3831 | 2.950781 | TGCTTTGGAACATGGTGGTAA | 58.049 | 42.857 | 0.00 | 0.00 | 39.30 | 2.85 |
2375 | 3832 | 3.505386 | TGCTTTGGAACATGGTGGTAAT | 58.495 | 40.909 | 0.00 | 0.00 | 39.30 | 1.89 |
2376 | 3833 | 3.900601 | TGCTTTGGAACATGGTGGTAATT | 59.099 | 39.130 | 0.00 | 0.00 | 39.30 | 1.40 |
2377 | 3834 | 5.080337 | TGCTTTGGAACATGGTGGTAATTA | 58.920 | 37.500 | 0.00 | 0.00 | 39.30 | 1.40 |
2378 | 3835 | 5.047660 | TGCTTTGGAACATGGTGGTAATTAC | 60.048 | 40.000 | 7.09 | 7.09 | 39.30 | 1.89 |
2379 | 3836 | 5.047660 | GCTTTGGAACATGGTGGTAATTACA | 60.048 | 40.000 | 17.16 | 1.24 | 39.30 | 2.41 |
2380 | 3837 | 5.968528 | TTGGAACATGGTGGTAATTACAC | 57.031 | 39.130 | 17.16 | 12.33 | 39.30 | 2.90 |
2381 | 3838 | 4.986783 | TGGAACATGGTGGTAATTACACA | 58.013 | 39.130 | 17.16 | 12.43 | 40.54 | 3.72 |
2382 | 3839 | 5.575157 | TGGAACATGGTGGTAATTACACAT | 58.425 | 37.500 | 17.16 | 13.95 | 40.54 | 3.21 |
2383 | 3840 | 5.417266 | TGGAACATGGTGGTAATTACACATG | 59.583 | 40.000 | 27.59 | 27.59 | 40.54 | 3.21 |
2426 | 3883 | 7.845066 | AAAATATTCAGTACTTCCTCCGTTC | 57.155 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2427 | 3884 | 3.889520 | ATTCAGTACTTCCTCCGTTCC | 57.110 | 47.619 | 0.00 | 0.00 | 0.00 | 3.62 |
2428 | 3885 | 2.599408 | TCAGTACTTCCTCCGTTCCT | 57.401 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2429 | 3886 | 3.726557 | TCAGTACTTCCTCCGTTCCTA | 57.273 | 47.619 | 0.00 | 0.00 | 0.00 | 2.94 |
2430 | 3887 | 4.038271 | TCAGTACTTCCTCCGTTCCTAA | 57.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
2431 | 3888 | 4.410099 | TCAGTACTTCCTCCGTTCCTAAA | 58.590 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
2432 | 3889 | 5.021458 | TCAGTACTTCCTCCGTTCCTAAAT | 58.979 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2433 | 3890 | 6.189859 | TCAGTACTTCCTCCGTTCCTAAATA | 58.810 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2434 | 3891 | 6.837568 | TCAGTACTTCCTCCGTTCCTAAATAT | 59.162 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2435 | 3892 | 8.000709 | TCAGTACTTCCTCCGTTCCTAAATATA | 58.999 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
2436 | 3893 | 8.636213 | CAGTACTTCCTCCGTTCCTAAATATAA | 58.364 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
2437 | 3894 | 8.858094 | AGTACTTCCTCCGTTCCTAAATATAAG | 58.142 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
2438 | 3895 | 7.672122 | ACTTCCTCCGTTCCTAAATATAAGT | 57.328 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2439 | 3896 | 7.724287 | ACTTCCTCCGTTCCTAAATATAAGTC | 58.276 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2440 | 3897 | 7.564292 | ACTTCCTCCGTTCCTAAATATAAGTCT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2441 | 3898 | 7.909485 | TCCTCCGTTCCTAAATATAAGTCTT | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2442 | 3899 | 8.315220 | TCCTCCGTTCCTAAATATAAGTCTTT | 57.685 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
2443 | 3900 | 8.765517 | TCCTCCGTTCCTAAATATAAGTCTTTT | 58.234 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2444 | 3901 | 9.392259 | CCTCCGTTCCTAAATATAAGTCTTTTT | 57.608 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
2505 | 3962 | 8.764524 | AGTGAATCAACACTCTAAACTATGTC | 57.235 | 34.615 | 0.00 | 0.00 | 46.36 | 3.06 |
2506 | 3963 | 8.589338 | AGTGAATCAACACTCTAAACTATGTCT | 58.411 | 33.333 | 0.00 | 0.00 | 46.36 | 3.41 |
2507 | 3964 | 9.856488 | GTGAATCAACACTCTAAACTATGTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 37.73 | 2.59 |
2537 | 3994 | 9.778741 | ACATCCGTATGTAGTCAATATTGAAAT | 57.221 | 29.630 | 19.55 | 13.50 | 44.66 | 2.17 |
2540 | 3997 | 9.476202 | TCCGTATGTAGTCAATATTGAAATCTG | 57.524 | 33.333 | 19.55 | 5.66 | 39.21 | 2.90 |
2541 | 3998 | 9.261180 | CCGTATGTAGTCAATATTGAAATCTGT | 57.739 | 33.333 | 19.55 | 7.53 | 39.21 | 3.41 |
2567 | 4024 | 8.959705 | AAAAGACTTATATTTAGGAACGGAGG | 57.040 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
2568 | 4025 | 6.667558 | AGACTTATATTTAGGAACGGAGGG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2584 | 4041 | 4.131596 | CGGAGGGAGTAAAAGTCAAAACA | 58.868 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
2593 | 4050 | 8.926715 | GAGTAAAAGTCAAAACACTCCAAATT | 57.073 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
2594 | 4051 | 8.926715 | AGTAAAAGTCAAAACACTCCAAATTC | 57.073 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
2595 | 4052 | 8.749354 | AGTAAAAGTCAAAACACTCCAAATTCT | 58.251 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
2614 | 4071 | 9.853921 | CAAATTCTATTTTCAACAAACTTGAGC | 57.146 | 29.630 | 0.00 | 0.00 | 0.00 | 4.26 |
2615 | 4072 | 9.822185 | AAATTCTATTTTCAACAAACTTGAGCT | 57.178 | 25.926 | 0.00 | 0.00 | 0.00 | 4.09 |
2620 | 4077 | 2.627945 | TCAACAAACTTGAGCTGTCGT | 58.372 | 42.857 | 0.00 | 0.00 | 0.00 | 4.34 |
2630 | 4088 | 2.739292 | TGAGCTGTCGTTTCTGTGTAC | 58.261 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
2648 | 4106 | 8.714179 | TCTGTGTACAAAAATATTCTGTAACGG | 58.286 | 33.333 | 0.00 | 13.37 | 0.00 | 4.44 |
2683 | 4141 | 9.270576 | CTGACAAAAATGACAAATATTCTCTCG | 57.729 | 33.333 | 0.00 | 0.00 | 0.00 | 4.04 |
2687 | 4145 | 9.079833 | CAAAAATGACAAATATTCTCTCGCAAT | 57.920 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
2689 | 4147 | 9.941664 | AAAATGACAAATATTCTCTCGCAATAG | 57.058 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
2690 | 4148 | 6.530913 | TGACAAATATTCTCTCGCAATAGC | 57.469 | 37.500 | 0.00 | 0.00 | 37.42 | 2.97 |
2691 | 4149 | 6.048509 | TGACAAATATTCTCTCGCAATAGCA | 58.951 | 36.000 | 0.00 | 0.00 | 42.27 | 3.49 |
2698 | 4156 | 4.063998 | TCTCTCGCAATAGCATGAACAT | 57.936 | 40.909 | 0.00 | 0.00 | 42.27 | 2.71 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
91 | 92 | 2.615493 | GCTAGTGTGCCTGTATGGTTGT | 60.615 | 50.000 | 0.00 | 0.00 | 38.35 | 3.32 |
113 | 114 | 7.711846 | AGCTTCAGATGTCTGTGTATACTTAG | 58.288 | 38.462 | 9.65 | 2.81 | 44.12 | 2.18 |
542 | 543 | 4.965814 | TGTGGATTATCAGATGAGCTTCC | 58.034 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
547 | 548 | 4.750598 | CAGCACTGTGGATTATCAGATGAG | 59.249 | 45.833 | 10.21 | 0.00 | 35.84 | 2.90 |
1232 | 1247 | 3.083349 | CCAGCGTGGGGAGGATCA | 61.083 | 66.667 | 0.00 | 0.00 | 36.25 | 2.92 |
1296 | 1314 | 1.138047 | CGTCGATGTTGTAGGCCGAC | 61.138 | 60.000 | 9.38 | 9.38 | 44.06 | 4.79 |
1309 | 1327 | 2.163613 | TGTAGTTGATGCTGACGTCGAT | 59.836 | 45.455 | 11.62 | 2.51 | 34.28 | 3.59 |
1310 | 1331 | 1.538075 | TGTAGTTGATGCTGACGTCGA | 59.462 | 47.619 | 11.62 | 0.00 | 34.28 | 4.20 |
1402 | 1423 | 4.452733 | GAGGTTGAGGCGGGGTCG | 62.453 | 72.222 | 0.00 | 0.00 | 39.81 | 4.79 |
1403 | 1424 | 4.452733 | CGAGGTTGAGGCGGGGTC | 62.453 | 72.222 | 0.00 | 0.00 | 0.00 | 4.46 |
1407 | 1428 | 4.697756 | TTGGCGAGGTTGAGGCGG | 62.698 | 66.667 | 0.00 | 0.00 | 35.52 | 6.13 |
1414 | 1435 | 4.699522 | GGCGAGGTTGGCGAGGTT | 62.700 | 66.667 | 0.00 | 0.00 | 0.00 | 3.50 |
1449 | 1470 | 4.436998 | CTGGTCTGGACGGCGGAC | 62.437 | 72.222 | 13.24 | 8.75 | 0.00 | 4.79 |
1518 | 1542 | 1.279271 | GCTACTTGCCTCTTGGGAGAA | 59.721 | 52.381 | 0.00 | 0.00 | 41.86 | 2.87 |
1584 | 1622 | 5.644644 | CAAATCCTTCATGGCTAGAAACAC | 58.355 | 41.667 | 0.00 | 0.00 | 35.26 | 3.32 |
1607 | 1647 | 4.803088 | TCTCTCGTTCGAACTACTAGTAGC | 59.197 | 45.833 | 26.54 | 12.55 | 36.66 | 3.58 |
1610 | 1650 | 4.819769 | AGTCTCTCGTTCGAACTACTAGT | 58.180 | 43.478 | 24.80 | 0.00 | 0.00 | 2.57 |
1661 | 1701 | 4.836175 | TGACCAGGAGTAGAACACATTACA | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
1662 | 1702 | 5.169295 | GTGACCAGGAGTAGAACACATTAC | 58.831 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
1664 | 1704 | 3.306088 | CGTGACCAGGAGTAGAACACATT | 60.306 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
1666 | 1706 | 1.611977 | CGTGACCAGGAGTAGAACACA | 59.388 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
1667 | 1707 | 1.612463 | ACGTGACCAGGAGTAGAACAC | 59.388 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
1668 | 1708 | 1.991121 | ACGTGACCAGGAGTAGAACA | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1669 | 1709 | 3.734293 | GCATACGTGACCAGGAGTAGAAC | 60.734 | 52.174 | 0.00 | 0.00 | 0.00 | 3.01 |
1672 | 1712 | 1.749063 | TGCATACGTGACCAGGAGTAG | 59.251 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
1673 | 1713 | 1.842052 | TGCATACGTGACCAGGAGTA | 58.158 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1674 | 1714 | 0.973632 | TTGCATACGTGACCAGGAGT | 59.026 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1676 | 1716 | 1.277842 | ACATTGCATACGTGACCAGGA | 59.722 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
1677 | 1717 | 1.398041 | CACATTGCATACGTGACCAGG | 59.602 | 52.381 | 0.00 | 0.00 | 32.23 | 4.45 |
1678 | 1718 | 2.076100 | ACACATTGCATACGTGACCAG | 58.924 | 47.619 | 15.24 | 0.00 | 34.69 | 4.00 |
1679 | 1719 | 2.177394 | ACACATTGCATACGTGACCA | 57.823 | 45.000 | 15.24 | 0.00 | 34.69 | 4.02 |
1681 | 1721 | 4.625742 | AGTAGAACACATTGCATACGTGAC | 59.374 | 41.667 | 15.24 | 9.64 | 34.69 | 3.67 |
1682 | 1722 | 4.816392 | AGTAGAACACATTGCATACGTGA | 58.184 | 39.130 | 15.24 | 0.00 | 34.69 | 4.35 |
1683 | 1723 | 5.348724 | AGAAGTAGAACACATTGCATACGTG | 59.651 | 40.000 | 0.00 | 8.62 | 36.70 | 4.49 |
1684 | 1724 | 5.348724 | CAGAAGTAGAACACATTGCATACGT | 59.651 | 40.000 | 0.00 | 0.00 | 0.00 | 3.57 |
1685 | 1725 | 5.220472 | CCAGAAGTAGAACACATTGCATACG | 60.220 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1686 | 1726 | 5.643777 | ACCAGAAGTAGAACACATTGCATAC | 59.356 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1691 | 1731 | 5.056480 | TGTGACCAGAAGTAGAACACATTG | 58.944 | 41.667 | 0.00 | 0.00 | 33.04 | 2.82 |
1749 | 1845 | 5.713389 | AGAGCAACCAGATCAATCAAATTCA | 59.287 | 36.000 | 0.00 | 0.00 | 34.30 | 2.57 |
1766 | 1862 | 1.467734 | CATGAACAGAGGCAGAGCAAC | 59.532 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
1768 | 1864 | 0.689055 | ACATGAACAGAGGCAGAGCA | 59.311 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1770 | 1866 | 1.998315 | CGAACATGAACAGAGGCAGAG | 59.002 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
1848 | 1955 | 3.005791 | TGGTATCTGATGCATACAGGACG | 59.994 | 47.826 | 19.47 | 0.00 | 36.22 | 4.79 |
1875 | 1983 | 6.528537 | AGCAAAGTGAACCATGCATATTAA | 57.471 | 33.333 | 0.00 | 0.00 | 41.18 | 1.40 |
1876 | 1984 | 6.405731 | GGAAGCAAAGTGAACCATGCATATTA | 60.406 | 38.462 | 0.00 | 0.00 | 41.18 | 0.98 |
1877 | 1985 | 5.410355 | AAGCAAAGTGAACCATGCATATT | 57.590 | 34.783 | 0.00 | 0.00 | 41.18 | 1.28 |
1878 | 1986 | 4.142093 | GGAAGCAAAGTGAACCATGCATAT | 60.142 | 41.667 | 0.00 | 0.00 | 41.18 | 1.78 |
1879 | 1987 | 3.193267 | GGAAGCAAAGTGAACCATGCATA | 59.807 | 43.478 | 0.00 | 0.00 | 41.18 | 3.14 |
1882 | 1990 | 1.340889 | TGGAAGCAAAGTGAACCATGC | 59.659 | 47.619 | 0.00 | 1.01 | 39.06 | 4.06 |
1883 | 1991 | 2.886523 | TCTGGAAGCAAAGTGAACCATG | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
1884 | 1992 | 3.228188 | TCTGGAAGCAAAGTGAACCAT | 57.772 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
1886 | 1994 | 5.904362 | ATAATCTGGAAGCAAAGTGAACC | 57.096 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
1887 | 1995 | 6.808704 | GGAAATAATCTGGAAGCAAAGTGAAC | 59.191 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1888 | 1996 | 6.493115 | TGGAAATAATCTGGAAGCAAAGTGAA | 59.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1890 | 1998 | 6.271488 | TGGAAATAATCTGGAAGCAAAGTG | 57.729 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
1891 | 1999 | 6.494835 | AGTTGGAAATAATCTGGAAGCAAAGT | 59.505 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1892 | 2000 | 6.928520 | AGTTGGAAATAATCTGGAAGCAAAG | 58.071 | 36.000 | 0.00 | 0.00 | 0.00 | 2.77 |
1893 | 2001 | 6.916360 | AGTTGGAAATAATCTGGAAGCAAA | 57.084 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
1894 | 2002 | 6.267471 | ACAAGTTGGAAATAATCTGGAAGCAA | 59.733 | 34.615 | 7.96 | 0.00 | 0.00 | 3.91 |
1895 | 2003 | 5.774690 | ACAAGTTGGAAATAATCTGGAAGCA | 59.225 | 36.000 | 7.96 | 0.00 | 0.00 | 3.91 |
1896 | 2004 | 6.272822 | ACAAGTTGGAAATAATCTGGAAGC | 57.727 | 37.500 | 7.96 | 0.00 | 0.00 | 3.86 |
1897 | 2005 | 8.567285 | AGTACAAGTTGGAAATAATCTGGAAG | 57.433 | 34.615 | 7.96 | 0.00 | 0.00 | 3.46 |
1898 | 2006 | 7.610305 | GGAGTACAAGTTGGAAATAATCTGGAA | 59.390 | 37.037 | 7.96 | 0.00 | 0.00 | 3.53 |
1899 | 2007 | 7.110155 | GGAGTACAAGTTGGAAATAATCTGGA | 58.890 | 38.462 | 7.96 | 0.00 | 0.00 | 3.86 |
1900 | 2008 | 6.037172 | CGGAGTACAAGTTGGAAATAATCTGG | 59.963 | 42.308 | 7.96 | 0.00 | 0.00 | 3.86 |
1901 | 2009 | 6.816640 | TCGGAGTACAAGTTGGAAATAATCTG | 59.183 | 38.462 | 7.96 | 4.74 | 0.00 | 2.90 |
1902 | 2010 | 6.942976 | TCGGAGTACAAGTTGGAAATAATCT | 58.057 | 36.000 | 7.96 | 0.00 | 0.00 | 2.40 |
1903 | 2011 | 7.605410 | TTCGGAGTACAAGTTGGAAATAATC | 57.395 | 36.000 | 7.96 | 0.00 | 0.00 | 1.75 |
1904 | 2012 | 8.047310 | AGATTCGGAGTACAAGTTGGAAATAAT | 58.953 | 33.333 | 7.96 | 0.00 | 0.00 | 1.28 |
1905 | 2013 | 7.391620 | AGATTCGGAGTACAAGTTGGAAATAA | 58.608 | 34.615 | 7.96 | 0.00 | 0.00 | 1.40 |
1906 | 2014 | 6.942976 | AGATTCGGAGTACAAGTTGGAAATA | 58.057 | 36.000 | 7.96 | 0.00 | 0.00 | 1.40 |
1908 | 2016 | 5.223449 | AGATTCGGAGTACAAGTTGGAAA | 57.777 | 39.130 | 7.96 | 0.00 | 0.00 | 3.13 |
1915 | 2023 | 4.092091 | GCAGTTCAAGATTCGGAGTACAAG | 59.908 | 45.833 | 0.00 | 0.00 | 0.00 | 3.16 |
1918 | 2026 | 3.585862 | TGCAGTTCAAGATTCGGAGTAC | 58.414 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
1924 | 2032 | 6.110543 | TCATTACATGCAGTTCAAGATTCG | 57.889 | 37.500 | 0.00 | 0.00 | 0.00 | 3.34 |
1928 | 2036 | 4.571984 | CGGATCATTACATGCAGTTCAAGA | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1929 | 2037 | 4.571984 | TCGGATCATTACATGCAGTTCAAG | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1930 | 2038 | 4.512484 | TCGGATCATTACATGCAGTTCAA | 58.488 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
1935 | 2043 | 4.563061 | TGAGATCGGATCATTACATGCAG | 58.437 | 43.478 | 19.47 | 0.00 | 0.00 | 4.41 |
1936 | 2044 | 4.605640 | TGAGATCGGATCATTACATGCA | 57.394 | 40.909 | 19.47 | 0.00 | 0.00 | 3.96 |
1937 | 2045 | 4.934001 | ACATGAGATCGGATCATTACATGC | 59.066 | 41.667 | 26.83 | 9.96 | 35.20 | 4.06 |
1938 | 2046 | 8.538409 | TTAACATGAGATCGGATCATTACATG | 57.462 | 34.615 | 26.12 | 26.12 | 35.20 | 3.21 |
1939 | 2047 | 8.588472 | TCTTAACATGAGATCGGATCATTACAT | 58.412 | 33.333 | 19.47 | 14.61 | 35.20 | 2.29 |
1940 | 2048 | 7.951591 | TCTTAACATGAGATCGGATCATTACA | 58.048 | 34.615 | 19.47 | 13.22 | 35.20 | 2.41 |
1941 | 2049 | 8.867935 | CATCTTAACATGAGATCGGATCATTAC | 58.132 | 37.037 | 19.47 | 8.64 | 35.20 | 1.89 |
1942 | 2050 | 8.588472 | ACATCTTAACATGAGATCGGATCATTA | 58.412 | 33.333 | 19.47 | 6.11 | 35.20 | 1.90 |
1943 | 2051 | 7.387122 | CACATCTTAACATGAGATCGGATCATT | 59.613 | 37.037 | 19.47 | 8.26 | 35.20 | 2.57 |
1944 | 2052 | 6.872547 | CACATCTTAACATGAGATCGGATCAT | 59.127 | 38.462 | 19.47 | 4.60 | 37.90 | 2.45 |
1945 | 2053 | 6.040842 | TCACATCTTAACATGAGATCGGATCA | 59.959 | 38.462 | 19.47 | 2.19 | 31.66 | 2.92 |
1946 | 2054 | 6.450545 | TCACATCTTAACATGAGATCGGATC | 58.549 | 40.000 | 10.02 | 10.02 | 31.66 | 3.36 |
1947 | 2055 | 6.410942 | TCACATCTTAACATGAGATCGGAT | 57.589 | 37.500 | 0.00 | 0.00 | 31.66 | 4.18 |
1948 | 2056 | 5.852282 | TCACATCTTAACATGAGATCGGA | 57.148 | 39.130 | 0.00 | 0.00 | 31.66 | 4.55 |
1950 | 2058 | 8.131731 | TCTACTTCACATCTTAACATGAGATCG | 58.868 | 37.037 | 0.00 | 0.00 | 31.66 | 3.69 |
1951 | 2059 | 9.979578 | ATCTACTTCACATCTTAACATGAGATC | 57.020 | 33.333 | 0.00 | 0.00 | 31.66 | 2.75 |
1953 | 2061 | 9.591792 | CAATCTACTTCACATCTTAACATGAGA | 57.408 | 33.333 | 0.00 | 0.00 | 0.00 | 3.27 |
1954 | 2062 | 8.824781 | CCAATCTACTTCACATCTTAACATGAG | 58.175 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1955 | 2063 | 8.539544 | TCCAATCTACTTCACATCTTAACATGA | 58.460 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
1956 | 2064 | 8.722480 | TCCAATCTACTTCACATCTTAACATG | 57.278 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2048 | 2845 | 8.553459 | AATCAGACACAATTGTAGGAAACTAG | 57.447 | 34.615 | 11.53 | 0.00 | 45.49 | 2.57 |
2096 | 3507 | 2.615493 | CCCCACGACAATTTAGAGCAGT | 60.615 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2109 | 3520 | 1.949257 | CAGAAACTTGCCCCACGAC | 59.051 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
2123 | 3534 | 6.932960 | GGAAACTAACTAGTAACTTGGCAGAA | 59.067 | 38.462 | 0.00 | 0.00 | 34.99 | 3.02 |
2183 | 3636 | 5.163864 | TGACTAACTGTAAATTGCATCAGCG | 60.164 | 40.000 | 0.00 | 0.00 | 46.23 | 5.18 |
2214 | 3667 | 7.490402 | GGGAAGTTCATCAATGCAGAATTTTAG | 59.510 | 37.037 | 5.01 | 0.00 | 0.00 | 1.85 |
2285 | 3742 | 5.527582 | CACTTCCTTTCCTCTTCTCGAAAAA | 59.472 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2289 | 3746 | 2.028930 | GCACTTCCTTTCCTCTTCTCGA | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
2290 | 3747 | 2.289072 | TGCACTTCCTTTCCTCTTCTCG | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
2295 | 3752 | 2.614259 | TCTCTGCACTTCCTTTCCTCT | 58.386 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
2304 | 3761 | 6.064846 | TCTGAACATTTTTCTCTGCACTTC | 57.935 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2307 | 3764 | 7.362662 | TGTAATCTGAACATTTTTCTCTGCAC | 58.637 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
2308 | 3765 | 7.509141 | TGTAATCTGAACATTTTTCTCTGCA | 57.491 | 32.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2309 | 3766 | 8.239314 | TCATGTAATCTGAACATTTTTCTCTGC | 58.761 | 33.333 | 0.00 | 0.00 | 35.39 | 4.26 |
2313 | 3770 | 9.865321 | CCATTCATGTAATCTGAACATTTTTCT | 57.135 | 29.630 | 0.00 | 0.00 | 35.39 | 2.52 |
2314 | 3771 | 9.859427 | TCCATTCATGTAATCTGAACATTTTTC | 57.141 | 29.630 | 0.00 | 0.00 | 35.39 | 2.29 |
2315 | 3772 | 9.643693 | GTCCATTCATGTAATCTGAACATTTTT | 57.356 | 29.630 | 0.00 | 0.00 | 35.39 | 1.94 |
2316 | 3773 | 8.805175 | TGTCCATTCATGTAATCTGAACATTTT | 58.195 | 29.630 | 0.00 | 0.00 | 35.39 | 1.82 |
2317 | 3774 | 8.246180 | GTGTCCATTCATGTAATCTGAACATTT | 58.754 | 33.333 | 0.00 | 0.00 | 35.39 | 2.32 |
2318 | 3775 | 7.394077 | TGTGTCCATTCATGTAATCTGAACATT | 59.606 | 33.333 | 0.00 | 0.00 | 35.39 | 2.71 |
2319 | 3776 | 6.885918 | TGTGTCCATTCATGTAATCTGAACAT | 59.114 | 34.615 | 0.00 | 0.00 | 38.08 | 2.71 |
2320 | 3777 | 6.237154 | TGTGTCCATTCATGTAATCTGAACA | 58.763 | 36.000 | 0.00 | 0.00 | 35.57 | 3.18 |
2321 | 3778 | 6.741992 | TGTGTCCATTCATGTAATCTGAAC | 57.258 | 37.500 | 0.00 | 0.00 | 35.57 | 3.18 |
2322 | 3779 | 6.375174 | CCTTGTGTCCATTCATGTAATCTGAA | 59.625 | 38.462 | 0.00 | 0.00 | 37.06 | 3.02 |
2323 | 3780 | 5.882000 | CCTTGTGTCCATTCATGTAATCTGA | 59.118 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2324 | 3781 | 5.882000 | TCCTTGTGTCCATTCATGTAATCTG | 59.118 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2325 | 3782 | 6.065976 | TCCTTGTGTCCATTCATGTAATCT | 57.934 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
2326 | 3783 | 6.757897 | TTCCTTGTGTCCATTCATGTAATC | 57.242 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
2327 | 3784 | 7.537596 | TTTTCCTTGTGTCCATTCATGTAAT | 57.462 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2328 | 3785 | 6.968263 | TTTTCCTTGTGTCCATTCATGTAA | 57.032 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2329 | 3786 | 8.685427 | CATATTTTCCTTGTGTCCATTCATGTA | 58.315 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2330 | 3787 | 7.549839 | CATATTTTCCTTGTGTCCATTCATGT | 58.450 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
2331 | 3788 | 6.477688 | GCATATTTTCCTTGTGTCCATTCATG | 59.522 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
2332 | 3789 | 6.381994 | AGCATATTTTCCTTGTGTCCATTCAT | 59.618 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2333 | 3790 | 5.716228 | AGCATATTTTCCTTGTGTCCATTCA | 59.284 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2334 | 3791 | 6.212888 | AGCATATTTTCCTTGTGTCCATTC | 57.787 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
2335 | 3792 | 6.610075 | AAGCATATTTTCCTTGTGTCCATT | 57.390 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2336 | 3793 | 6.400568 | CAAAGCATATTTTCCTTGTGTCCAT | 58.599 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2337 | 3794 | 5.279406 | CCAAAGCATATTTTCCTTGTGTCCA | 60.279 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2338 | 3795 | 5.047377 | TCCAAAGCATATTTTCCTTGTGTCC | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2339 | 3796 | 6.024552 | TCCAAAGCATATTTTCCTTGTGTC | 57.975 | 37.500 | 0.00 | 0.00 | 0.00 | 3.67 |
2340 | 3797 | 6.183360 | TGTTCCAAAGCATATTTTCCTTGTGT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.72 |
2341 | 3798 | 6.222389 | TGTTCCAAAGCATATTTTCCTTGTG | 58.778 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2342 | 3799 | 6.418057 | TGTTCCAAAGCATATTTTCCTTGT | 57.582 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2343 | 3800 | 6.314400 | CCATGTTCCAAAGCATATTTTCCTTG | 59.686 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
2344 | 3801 | 6.013466 | ACCATGTTCCAAAGCATATTTTCCTT | 60.013 | 34.615 | 0.00 | 0.00 | 0.00 | 3.36 |
2345 | 3802 | 5.484998 | ACCATGTTCCAAAGCATATTTTCCT | 59.515 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2346 | 3803 | 5.581874 | CACCATGTTCCAAAGCATATTTTCC | 59.418 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2347 | 3804 | 5.581874 | CCACCATGTTCCAAAGCATATTTTC | 59.418 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2348 | 3805 | 5.012975 | ACCACCATGTTCCAAAGCATATTTT | 59.987 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2349 | 3806 | 4.531732 | ACCACCATGTTCCAAAGCATATTT | 59.468 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2350 | 3807 | 4.095946 | ACCACCATGTTCCAAAGCATATT | 58.904 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
2351 | 3808 | 3.711863 | ACCACCATGTTCCAAAGCATAT | 58.288 | 40.909 | 0.00 | 0.00 | 0.00 | 1.78 |
2352 | 3809 | 3.168035 | ACCACCATGTTCCAAAGCATA | 57.832 | 42.857 | 0.00 | 0.00 | 0.00 | 3.14 |
2353 | 3810 | 2.014010 | ACCACCATGTTCCAAAGCAT | 57.986 | 45.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2354 | 3811 | 2.666272 | TACCACCATGTTCCAAAGCA | 57.334 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2355 | 3812 | 4.535526 | AATTACCACCATGTTCCAAAGC | 57.464 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
2356 | 3813 | 6.015856 | TGTGTAATTACCACCATGTTCCAAAG | 60.016 | 38.462 | 13.01 | 0.00 | 0.00 | 2.77 |
2357 | 3814 | 5.833667 | TGTGTAATTACCACCATGTTCCAAA | 59.166 | 36.000 | 13.01 | 0.00 | 0.00 | 3.28 |
2358 | 3815 | 5.386060 | TGTGTAATTACCACCATGTTCCAA | 58.614 | 37.500 | 13.01 | 0.00 | 0.00 | 3.53 |
2359 | 3816 | 4.986783 | TGTGTAATTACCACCATGTTCCA | 58.013 | 39.130 | 13.01 | 0.00 | 0.00 | 3.53 |
2360 | 3817 | 5.650266 | TCATGTGTAATTACCACCATGTTCC | 59.350 | 40.000 | 24.37 | 0.00 | 32.44 | 3.62 |
2361 | 3818 | 6.751514 | TCATGTGTAATTACCACCATGTTC | 57.248 | 37.500 | 24.37 | 6.18 | 32.44 | 3.18 |
2362 | 3819 | 8.682710 | GTTATCATGTGTAATTACCACCATGTT | 58.317 | 33.333 | 24.37 | 21.12 | 32.44 | 2.71 |
2363 | 3820 | 8.052748 | AGTTATCATGTGTAATTACCACCATGT | 58.947 | 33.333 | 24.37 | 18.48 | 32.44 | 3.21 |
2364 | 3821 | 8.344831 | CAGTTATCATGTGTAATTACCACCATG | 58.655 | 37.037 | 21.96 | 21.96 | 32.13 | 3.66 |
2365 | 3822 | 8.271458 | TCAGTTATCATGTGTAATTACCACCAT | 58.729 | 33.333 | 13.01 | 9.33 | 0.00 | 3.55 |
2366 | 3823 | 7.625469 | TCAGTTATCATGTGTAATTACCACCA | 58.375 | 34.615 | 13.01 | 7.52 | 0.00 | 4.17 |
2367 | 3824 | 8.677148 | ATCAGTTATCATGTGTAATTACCACC | 57.323 | 34.615 | 13.01 | 2.14 | 0.00 | 4.61 |
2401 | 3858 | 7.336176 | GGAACGGAGGAAGTACTGAATATTTTT | 59.664 | 37.037 | 0.00 | 0.00 | 0.00 | 1.94 |
2406 | 3863 | 4.607239 | AGGAACGGAGGAAGTACTGAATA | 58.393 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
2411 | 3868 | 8.773033 | TTATATTTAGGAACGGAGGAAGTACT | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
2412 | 3869 | 8.637099 | ACTTATATTTAGGAACGGAGGAAGTAC | 58.363 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
2413 | 3870 | 8.773033 | ACTTATATTTAGGAACGGAGGAAGTA | 57.227 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2414 | 3871 | 7.564292 | AGACTTATATTTAGGAACGGAGGAAGT | 59.436 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
2415 | 3872 | 7.953752 | AGACTTATATTTAGGAACGGAGGAAG | 58.046 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
2416 | 3873 | 7.909485 | AGACTTATATTTAGGAACGGAGGAA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2417 | 3874 | 7.909485 | AAGACTTATATTTAGGAACGGAGGA | 57.091 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
2418 | 3875 | 8.959705 | AAAAGACTTATATTTAGGAACGGAGG | 57.040 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
2473 | 3930 | 9.788960 | GTTTAGAGTGTTGATTCACTTCTTTTT | 57.211 | 29.630 | 0.98 | 0.00 | 46.81 | 1.94 |
2474 | 3931 | 9.178758 | AGTTTAGAGTGTTGATTCACTTCTTTT | 57.821 | 29.630 | 0.98 | 0.00 | 46.81 | 2.27 |
2475 | 3932 | 8.738645 | AGTTTAGAGTGTTGATTCACTTCTTT | 57.261 | 30.769 | 0.98 | 0.00 | 46.81 | 2.52 |
2477 | 3934 | 9.429359 | CATAGTTTAGAGTGTTGATTCACTTCT | 57.571 | 33.333 | 0.98 | 3.43 | 46.81 | 2.85 |
2478 | 3935 | 9.209175 | ACATAGTTTAGAGTGTTGATTCACTTC | 57.791 | 33.333 | 0.98 | 0.00 | 46.81 | 3.01 |
2479 | 3936 | 9.209175 | GACATAGTTTAGAGTGTTGATTCACTT | 57.791 | 33.333 | 0.98 | 0.00 | 46.81 | 3.16 |
2481 | 3938 | 8.764524 | AGACATAGTTTAGAGTGTTGATTCAC | 57.235 | 34.615 | 0.00 | 0.00 | 38.46 | 3.18 |
2501 | 3958 | 9.901172 | TGACTACATACGGATGTATATAGACAT | 57.099 | 33.333 | 20.64 | 12.70 | 45.42 | 3.06 |
2502 | 3959 | 9.729281 | TTGACTACATACGGATGTATATAGACA | 57.271 | 33.333 | 20.64 | 13.92 | 45.42 | 3.41 |
2511 | 3968 | 9.778741 | ATTTCAATATTGACTACATACGGATGT | 57.221 | 29.630 | 19.12 | 19.12 | 42.14 | 3.06 |
2514 | 3971 | 9.476202 | CAGATTTCAATATTGACTACATACGGA | 57.524 | 33.333 | 17.76 | 0.00 | 36.83 | 4.69 |
2515 | 3972 | 9.261180 | ACAGATTTCAATATTGACTACATACGG | 57.739 | 33.333 | 17.76 | 8.47 | 36.83 | 4.02 |
2542 | 3999 | 7.991460 | CCCTCCGTTCCTAAATATAAGTCTTTT | 59.009 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
2543 | 4000 | 7.346436 | TCCCTCCGTTCCTAAATATAAGTCTTT | 59.654 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2544 | 4001 | 6.842807 | TCCCTCCGTTCCTAAATATAAGTCTT | 59.157 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2545 | 4002 | 6.379579 | TCCCTCCGTTCCTAAATATAAGTCT | 58.620 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2546 | 4003 | 6.267242 | ACTCCCTCCGTTCCTAAATATAAGTC | 59.733 | 42.308 | 0.00 | 0.00 | 0.00 | 3.01 |
2547 | 4004 | 6.141790 | ACTCCCTCCGTTCCTAAATATAAGT | 58.858 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2548 | 4005 | 6.667558 | ACTCCCTCCGTTCCTAAATATAAG | 57.332 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
2549 | 4006 | 8.551682 | TTTACTCCCTCCGTTCCTAAATATAA | 57.448 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
2550 | 4007 | 8.551682 | TTTTACTCCCTCCGTTCCTAAATATA | 57.448 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
2551 | 4008 | 7.126879 | ACTTTTACTCCCTCCGTTCCTAAATAT | 59.873 | 37.037 | 0.00 | 0.00 | 0.00 | 1.28 |
2552 | 4009 | 6.441604 | ACTTTTACTCCCTCCGTTCCTAAATA | 59.558 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
2553 | 4010 | 5.250082 | ACTTTTACTCCCTCCGTTCCTAAAT | 59.750 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2554 | 4011 | 4.594491 | ACTTTTACTCCCTCCGTTCCTAAA | 59.406 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2555 | 4012 | 4.162651 | ACTTTTACTCCCTCCGTTCCTAA | 58.837 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
2556 | 4013 | 3.766051 | GACTTTTACTCCCTCCGTTCCTA | 59.234 | 47.826 | 0.00 | 0.00 | 0.00 | 2.94 |
2557 | 4014 | 2.566279 | GACTTTTACTCCCTCCGTTCCT | 59.434 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2558 | 4015 | 2.301009 | TGACTTTTACTCCCTCCGTTCC | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2559 | 4016 | 3.672767 | TGACTTTTACTCCCTCCGTTC | 57.327 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
2560 | 4017 | 4.426736 | TTTGACTTTTACTCCCTCCGTT | 57.573 | 40.909 | 0.00 | 0.00 | 0.00 | 4.44 |
2561 | 4018 | 4.132336 | GTTTTGACTTTTACTCCCTCCGT | 58.868 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
2562 | 4019 | 4.024302 | GTGTTTTGACTTTTACTCCCTCCG | 60.024 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
2563 | 4020 | 5.131067 | AGTGTTTTGACTTTTACTCCCTCC | 58.869 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2564 | 4021 | 5.238868 | GGAGTGTTTTGACTTTTACTCCCTC | 59.761 | 44.000 | 9.49 | 0.00 | 45.23 | 4.30 |
2565 | 4022 | 5.131067 | GGAGTGTTTTGACTTTTACTCCCT | 58.869 | 41.667 | 9.49 | 0.00 | 45.23 | 4.20 |
2566 | 4023 | 5.434352 | GGAGTGTTTTGACTTTTACTCCC | 57.566 | 43.478 | 9.49 | 0.00 | 45.23 | 4.30 |
2568 | 4025 | 8.926715 | AATTTGGAGTGTTTTGACTTTTACTC | 57.073 | 30.769 | 0.00 | 0.00 | 35.13 | 2.59 |
2592 | 4049 | 7.771183 | ACAGCTCAAGTTTGTTGAAAATAGAA | 58.229 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
2593 | 4050 | 7.333528 | ACAGCTCAAGTTTGTTGAAAATAGA | 57.666 | 32.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2594 | 4051 | 6.358030 | CGACAGCTCAAGTTTGTTGAAAATAG | 59.642 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2595 | 4052 | 6.183360 | ACGACAGCTCAAGTTTGTTGAAAATA | 60.183 | 34.615 | 0.00 | 0.00 | 31.96 | 1.40 |
2596 | 4053 | 5.036737 | CGACAGCTCAAGTTTGTTGAAAAT | 58.963 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
2600 | 4057 | 2.627945 | ACGACAGCTCAAGTTTGTTGA | 58.372 | 42.857 | 0.00 | 0.00 | 31.96 | 3.18 |
2614 | 4071 | 9.103048 | GAATATTTTTGTACACAGAAACGACAG | 57.897 | 33.333 | 0.00 | 0.00 | 33.63 | 3.51 |
2615 | 4072 | 8.832521 | AGAATATTTTTGTACACAGAAACGACA | 58.167 | 29.630 | 0.00 | 0.00 | 33.63 | 4.35 |
2657 | 4115 | 9.270576 | CGAGAGAATATTTGTCATTTTTGTCAG | 57.729 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2682 | 4140 | 4.609113 | CGAGGTAATGTTCATGCTATTGCG | 60.609 | 45.833 | 0.00 | 0.00 | 43.34 | 4.85 |
2683 | 4141 | 4.273480 | ACGAGGTAATGTTCATGCTATTGC | 59.727 | 41.667 | 0.00 | 0.00 | 40.20 | 3.56 |
2687 | 4145 | 9.239551 | ACTATATACGAGGTAATGTTCATGCTA | 57.760 | 33.333 | 0.00 | 0.00 | 0.00 | 3.49 |
2688 | 4146 | 8.029522 | CACTATATACGAGGTAATGTTCATGCT | 58.970 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
2689 | 4147 | 8.027189 | TCACTATATACGAGGTAATGTTCATGC | 58.973 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
2690 | 4148 | 9.343103 | GTCACTATATACGAGGTAATGTTCATG | 57.657 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
2691 | 4149 | 9.074576 | TGTCACTATATACGAGGTAATGTTCAT | 57.925 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.