Multiple sequence alignment - TraesCS3B01G168000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G168000 chr3B 100.000 5622 0 0 1 5622 168684185 168678564 0.000000e+00 10382
1 TraesCS3B01G168000 chr3B 95.519 915 41 0 4708 5622 59368668 59367754 0.000000e+00 1463
2 TraesCS3B01G168000 chr3B 94.438 917 48 2 4708 5622 711067763 711068678 0.000000e+00 1408
3 TraesCS3B01G168000 chr3B 97.191 178 5 0 174 351 161459629 161459452 9.150000e-78 302
4 TraesCS3B01G168000 chr3D 94.481 3388 97 49 1388 4709 115022378 115019015 0.000000e+00 5138
5 TraesCS3B01G168000 chr3D 96.927 423 10 1 869 1288 115022904 115022482 0.000000e+00 706
6 TraesCS3B01G168000 chr3D 97.835 231 4 1 348 578 115024969 115024740 1.130000e-106 398
7 TraesCS3B01G168000 chr3D 86.513 304 16 14 575 877 115024716 115024437 1.520000e-80 311
8 TraesCS3B01G168000 chr3D 93.820 178 7 1 1 174 115025133 115024956 1.200000e-66 265
9 TraesCS3B01G168000 chr3A 92.153 2778 147 45 1889 4633 111553214 111550475 0.000000e+00 3856
10 TraesCS3B01G168000 chr3A 89.073 723 34 14 575 1290 111554388 111553704 0.000000e+00 856
11 TraesCS3B01G168000 chr3A 95.285 403 19 0 1393 1795 111553614 111553212 1.710000e-179 640
12 TraesCS3B01G168000 chr3A 96.089 179 7 0 174 352 25947583 25947761 5.510000e-75 292
13 TraesCS3B01G168000 chr3A 96.111 180 6 1 174 353 735376197 735376019 5.510000e-75 292
14 TraesCS3B01G168000 chr2B 96.066 915 36 0 4708 5622 29172282 29171368 0.000000e+00 1491
15 TraesCS3B01G168000 chr2B 94.846 912 44 3 4708 5619 602771783 602772691 0.000000e+00 1421
16 TraesCS3B01G168000 chr2B 94.002 917 52 2 4708 5622 602747152 602746237 0.000000e+00 1386
17 TraesCS3B01G168000 chr2B 96.067 178 7 0 174 351 64891772 64891595 1.980000e-74 291
18 TraesCS3B01G168000 chr7B 95.956 915 37 0 4708 5622 645322616 645323530 0.000000e+00 1485
19 TraesCS3B01G168000 chr7B 95.956 915 37 0 4708 5622 645345001 645345915 0.000000e+00 1485
20 TraesCS3B01G168000 chr7B 95.093 917 44 1 4707 5622 501951048 501951964 0.000000e+00 1443
21 TraesCS3B01G168000 chr7B 81.647 1008 175 9 2829 3831 443294303 443293301 0.000000e+00 828
22 TraesCS3B01G168000 chr7B 84.298 363 52 5 3830 4188 443293215 443292854 3.220000e-92 350
23 TraesCS3B01G168000 chr7B 82.979 282 34 13 4351 4623 443292691 443292415 5.630000e-60 243
24 TraesCS3B01G168000 chr4B 95.628 915 40 0 4708 5622 187443094 187444008 0.000000e+00 1469
25 TraesCS3B01G168000 chr4B 95.676 185 7 1 167 351 666660342 666660159 4.260000e-76 296
26 TraesCS3B01G168000 chr4B 95.135 185 6 2 167 351 666696966 666696785 7.130000e-74 289
27 TraesCS3B01G168000 chr7A 82.639 1008 165 9 2829 3831 507761325 507762327 0.000000e+00 883
28 TraesCS3B01G168000 chr7A 84.022 363 53 5 3827 4185 507762390 507762751 1.500000e-90 344
29 TraesCS3B01G168000 chr7A 81.518 303 42 13 4330 4623 507762851 507763148 2.620000e-58 237
30 TraesCS3B01G168000 chr7D 81.548 1008 176 9 2829 3831 425504693 425503691 0.000000e+00 822
31 TraesCS3B01G168000 chr7D 83.747 363 54 5 3830 4188 425503618 425503257 6.980000e-89 339
32 TraesCS3B01G168000 chr7D 81.848 303 41 13 4330 4623 425503160 425502863 5.630000e-60 243
33 TraesCS3B01G168000 chr6B 95.676 185 5 3 166 350 624228873 624228692 1.530000e-75 294
34 TraesCS3B01G168000 chr6B 96.067 178 7 0 174 351 657617426 657617603 1.980000e-74 291
35 TraesCS3B01G168000 chr6B 94.624 186 8 2 168 351 87631961 87632146 2.560000e-73 287
36 TraesCS3B01G168000 chr1A 88.112 143 16 1 3045 3187 558126356 558126497 9.690000e-38 169
37 TraesCS3B01G168000 chr2D 91.000 100 8 1 3045 3144 643265157 643265059 3.530000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G168000 chr3B 168678564 168684185 5621 True 10382.000000 10382 100.000000 1 5622 1 chr3B.!!$R3 5621
1 TraesCS3B01G168000 chr3B 59367754 59368668 914 True 1463.000000 1463 95.519000 4708 5622 1 chr3B.!!$R1 914
2 TraesCS3B01G168000 chr3B 711067763 711068678 915 False 1408.000000 1408 94.438000 4708 5622 1 chr3B.!!$F1 914
3 TraesCS3B01G168000 chr3D 115019015 115025133 6118 True 1363.600000 5138 93.915200 1 4709 5 chr3D.!!$R1 4708
4 TraesCS3B01G168000 chr3A 111550475 111554388 3913 True 1784.000000 3856 92.170333 575 4633 3 chr3A.!!$R2 4058
5 TraesCS3B01G168000 chr2B 29171368 29172282 914 True 1491.000000 1491 96.066000 4708 5622 1 chr2B.!!$R1 914
6 TraesCS3B01G168000 chr2B 602771783 602772691 908 False 1421.000000 1421 94.846000 4708 5619 1 chr2B.!!$F1 911
7 TraesCS3B01G168000 chr2B 602746237 602747152 915 True 1386.000000 1386 94.002000 4708 5622 1 chr2B.!!$R3 914
8 TraesCS3B01G168000 chr7B 645322616 645323530 914 False 1485.000000 1485 95.956000 4708 5622 1 chr7B.!!$F2 914
9 TraesCS3B01G168000 chr7B 645345001 645345915 914 False 1485.000000 1485 95.956000 4708 5622 1 chr7B.!!$F3 914
10 TraesCS3B01G168000 chr7B 501951048 501951964 916 False 1443.000000 1443 95.093000 4707 5622 1 chr7B.!!$F1 915
11 TraesCS3B01G168000 chr7B 443292415 443294303 1888 True 473.666667 828 82.974667 2829 4623 3 chr7B.!!$R1 1794
12 TraesCS3B01G168000 chr4B 187443094 187444008 914 False 1469.000000 1469 95.628000 4708 5622 1 chr4B.!!$F1 914
13 TraesCS3B01G168000 chr7A 507761325 507763148 1823 False 488.000000 883 82.726333 2829 4623 3 chr7A.!!$F1 1794
14 TraesCS3B01G168000 chr7D 425502863 425504693 1830 True 468.000000 822 82.381000 2829 4623 3 chr7D.!!$R1 1794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 177 0.248621 GCCGCGCTTTGCAAATATCT 60.249 50.0 13.23 0.0 46.97 1.98 F
1801 3417 0.102481 AGAAGCACGCCAGGTATACG 59.898 55.0 0.00 0.0 0.00 3.06 F
1867 3483 0.108377 TGAGTGCTGACGTGTGTGTT 60.108 50.0 0.00 0.0 0.00 3.32 F
1868 3484 0.301687 GAGTGCTGACGTGTGTGTTG 59.698 55.0 0.00 0.0 0.00 3.33 F
2522 4174 0.603707 CATCCGGTTGTGCTCACAGT 60.604 55.0 0.00 0.0 42.94 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1835 3451 0.108424 GCACTCACTAGTCAGGGCAG 60.108 60.000 17.06 0.00 31.97 4.85 R
3154 4845 1.456705 GGGGAGCTCGGAGATGACT 60.457 63.158 9.69 0.00 33.89 3.41 R
3247 4938 4.578898 TTGACGCCGCACTCACGT 62.579 61.111 0.00 0.00 43.83 4.49 R
4054 5837 0.806102 CGATGGTGACGCGGAAGAAT 60.806 55.000 12.47 0.00 0.00 2.40 R
4687 6492 1.459592 ACTTTTCACTTTCGCCGATCG 59.540 47.619 8.51 8.51 40.15 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 0.318441 GCACTTTCCTTTTCTGGGGC 59.682 55.000 0.00 0.00 0.00 5.80
24 25 2.001076 CACTTTCCTTTTCTGGGGCT 57.999 50.000 0.00 0.00 0.00 5.19
27 28 2.700371 ACTTTCCTTTTCTGGGGCTTTG 59.300 45.455 0.00 0.00 0.00 2.77
87 92 4.508124 GCCGTTGTTATAAGACTGATCTGG 59.492 45.833 4.49 0.00 34.48 3.86
167 172 4.940593 GTGGCCGCGCTTTGCAAA 62.941 61.111 12.14 12.14 46.97 3.68
168 173 3.988525 TGGCCGCGCTTTGCAAAT 61.989 55.556 13.23 0.00 46.97 2.32
169 174 2.180518 GGCCGCGCTTTGCAAATA 59.819 55.556 13.23 0.00 46.97 1.40
170 175 1.226945 GGCCGCGCTTTGCAAATAT 60.227 52.632 13.23 0.00 46.97 1.28
171 176 1.208642 GGCCGCGCTTTGCAAATATC 61.209 55.000 13.23 4.38 46.97 1.63
172 177 0.248621 GCCGCGCTTTGCAAATATCT 60.249 50.000 13.23 0.00 46.97 1.98
173 178 1.469917 CCGCGCTTTGCAAATATCTG 58.530 50.000 13.23 1.38 46.97 2.90
174 179 0.841984 CGCGCTTTGCAAATATCTGC 59.158 50.000 13.23 11.12 46.97 4.26
185 190 3.970610 GCAAATATCTGCAATGCTACACG 59.029 43.478 6.82 0.00 42.17 4.49
186 191 4.496341 GCAAATATCTGCAATGCTACACGT 60.496 41.667 6.82 0.00 42.17 4.49
187 192 5.277297 GCAAATATCTGCAATGCTACACGTA 60.277 40.000 6.82 0.00 42.17 3.57
188 193 5.907197 AATATCTGCAATGCTACACGTAC 57.093 39.130 6.82 0.00 0.00 3.67
189 194 2.734276 TCTGCAATGCTACACGTACA 57.266 45.000 6.82 0.00 0.00 2.90
190 195 3.033368 TCTGCAATGCTACACGTACAA 57.967 42.857 6.82 0.00 0.00 2.41
191 196 3.394719 TCTGCAATGCTACACGTACAAA 58.605 40.909 6.82 0.00 0.00 2.83
192 197 3.185594 TCTGCAATGCTACACGTACAAAC 59.814 43.478 6.82 0.00 0.00 2.93
209 214 7.771219 GTACAAACGATTTACAGGCTTTTAC 57.229 36.000 0.00 0.00 0.00 2.01
210 215 6.380095 ACAAACGATTTACAGGCTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
211 216 6.435428 ACAAACGATTTACAGGCTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
212 217 5.622770 AACGATTTACAGGCTTTTACAGG 57.377 39.130 0.00 0.00 0.00 4.00
213 218 4.901868 ACGATTTACAGGCTTTTACAGGA 58.098 39.130 0.00 0.00 0.00 3.86
214 219 5.497474 ACGATTTACAGGCTTTTACAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
215 220 5.354234 ACGATTTACAGGCTTTTACAGGATG 59.646 40.000 0.00 0.00 46.00 3.51
216 221 5.220854 CGATTTACAGGCTTTTACAGGATGG 60.221 44.000 0.00 0.00 43.62 3.51
217 222 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
218 223 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
219 224 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
220 225 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
221 226 5.580022 ACAGGCTTTTACAGGATGGTTAAT 58.420 37.500 0.00 0.00 43.62 1.40
222 227 5.652452 ACAGGCTTTTACAGGATGGTTAATC 59.348 40.000 0.00 0.00 43.62 1.75
223 228 5.888161 CAGGCTTTTACAGGATGGTTAATCT 59.112 40.000 0.00 0.00 43.62 2.40
224 229 6.378280 CAGGCTTTTACAGGATGGTTAATCTT 59.622 38.462 0.00 0.00 43.62 2.40
225 230 6.378280 AGGCTTTTACAGGATGGTTAATCTTG 59.622 38.462 0.00 0.00 45.55 3.02
226 231 6.377146 GGCTTTTACAGGATGGTTAATCTTGA 59.623 38.462 4.67 0.00 43.40 3.02
227 232 7.068716 GGCTTTTACAGGATGGTTAATCTTGAT 59.931 37.037 4.67 0.00 43.40 2.57
228 233 8.470002 GCTTTTACAGGATGGTTAATCTTGATT 58.530 33.333 4.67 1.35 43.40 2.57
229 234 9.793252 CTTTTACAGGATGGTTAATCTTGATTG 57.207 33.333 6.15 0.00 43.40 2.67
230 235 7.880160 TTACAGGATGGTTAATCTTGATTGG 57.120 36.000 6.15 0.00 43.40 3.16
231 236 5.831103 ACAGGATGGTTAATCTTGATTGGT 58.169 37.500 6.15 0.00 43.40 3.67
232 237 5.888161 ACAGGATGGTTAATCTTGATTGGTC 59.112 40.000 6.15 0.00 43.40 4.02
233 238 5.887598 CAGGATGGTTAATCTTGATTGGTCA 59.112 40.000 6.15 2.60 43.40 4.02
234 239 6.377996 CAGGATGGTTAATCTTGATTGGTCAA 59.622 38.462 6.15 0.00 43.40 3.18
235 240 7.069085 CAGGATGGTTAATCTTGATTGGTCAAT 59.931 37.037 6.15 0.00 43.40 2.57
236 241 8.281531 AGGATGGTTAATCTTGATTGGTCAATA 58.718 33.333 6.15 0.00 43.08 1.90
237 242 8.571336 GGATGGTTAATCTTGATTGGTCAATAG 58.429 37.037 6.15 0.00 43.08 1.73
238 243 7.880160 TGGTTAATCTTGATTGGTCAATAGG 57.120 36.000 6.15 0.00 43.08 2.57
239 244 7.410174 TGGTTAATCTTGATTGGTCAATAGGT 58.590 34.615 6.15 0.00 43.08 3.08
240 245 7.339212 TGGTTAATCTTGATTGGTCAATAGGTG 59.661 37.037 6.15 0.00 43.08 4.00
241 246 7.556275 GGTTAATCTTGATTGGTCAATAGGTGA 59.444 37.037 6.15 0.00 43.08 4.02
242 247 8.616076 GTTAATCTTGATTGGTCAATAGGTGAG 58.384 37.037 6.15 0.00 43.08 3.51
246 251 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
247 252 1.146263 GGTCAATAGGTGAGCGGGG 59.854 63.158 0.00 0.00 44.38 5.73
248 253 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
249 254 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
250 255 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
292 297 3.026694 GGGGGAAGAGATTTGTGATTGG 58.973 50.000 0.00 0.00 0.00 3.16
293 298 3.564352 GGGGGAAGAGATTTGTGATTGGT 60.564 47.826 0.00 0.00 0.00 3.67
294 299 4.089361 GGGGAAGAGATTTGTGATTGGTT 58.911 43.478 0.00 0.00 0.00 3.67
295 300 4.082026 GGGGAAGAGATTTGTGATTGGTTG 60.082 45.833 0.00 0.00 0.00 3.77
296 301 4.524328 GGGAAGAGATTTGTGATTGGTTGT 59.476 41.667 0.00 0.00 0.00 3.32
297 302 5.011023 GGGAAGAGATTTGTGATTGGTTGTT 59.989 40.000 0.00 0.00 0.00 2.83
298 303 6.208599 GGGAAGAGATTTGTGATTGGTTGTTA 59.791 38.462 0.00 0.00 0.00 2.41
299 304 7.308435 GGAAGAGATTTGTGATTGGTTGTTAG 58.692 38.462 0.00 0.00 0.00 2.34
300 305 7.174946 GGAAGAGATTTGTGATTGGTTGTTAGA 59.825 37.037 0.00 0.00 0.00 2.10
301 306 8.641498 AAGAGATTTGTGATTGGTTGTTAGAT 57.359 30.769 0.00 0.00 0.00 1.98
302 307 8.048534 AGAGATTTGTGATTGGTTGTTAGATG 57.951 34.615 0.00 0.00 0.00 2.90
303 308 7.884877 AGAGATTTGTGATTGGTTGTTAGATGA 59.115 33.333 0.00 0.00 0.00 2.92
304 309 8.408043 AGATTTGTGATTGGTTGTTAGATGAA 57.592 30.769 0.00 0.00 0.00 2.57
305 310 8.859090 AGATTTGTGATTGGTTGTTAGATGAAA 58.141 29.630 0.00 0.00 0.00 2.69
306 311 9.132521 GATTTGTGATTGGTTGTTAGATGAAAG 57.867 33.333 0.00 0.00 0.00 2.62
307 312 6.573664 TGTGATTGGTTGTTAGATGAAAGG 57.426 37.500 0.00 0.00 0.00 3.11
308 313 6.303054 TGTGATTGGTTGTTAGATGAAAGGA 58.697 36.000 0.00 0.00 0.00 3.36
309 314 6.430925 TGTGATTGGTTGTTAGATGAAAGGAG 59.569 38.462 0.00 0.00 0.00 3.69
310 315 5.415701 TGATTGGTTGTTAGATGAAAGGAGC 59.584 40.000 0.00 0.00 0.00 4.70
311 316 3.334691 TGGTTGTTAGATGAAAGGAGCG 58.665 45.455 0.00 0.00 0.00 5.03
312 317 3.244422 TGGTTGTTAGATGAAAGGAGCGT 60.244 43.478 0.00 0.00 0.00 5.07
313 318 3.125316 GGTTGTTAGATGAAAGGAGCGTG 59.875 47.826 0.00 0.00 0.00 5.34
314 319 3.678056 TGTTAGATGAAAGGAGCGTGT 57.322 42.857 0.00 0.00 0.00 4.49
315 320 4.794278 TGTTAGATGAAAGGAGCGTGTA 57.206 40.909 0.00 0.00 0.00 2.90
316 321 5.142061 TGTTAGATGAAAGGAGCGTGTAA 57.858 39.130 0.00 0.00 0.00 2.41
317 322 5.543714 TGTTAGATGAAAGGAGCGTGTAAA 58.456 37.500 0.00 0.00 0.00 2.01
318 323 5.992829 TGTTAGATGAAAGGAGCGTGTAAAA 59.007 36.000 0.00 0.00 0.00 1.52
319 324 6.147164 TGTTAGATGAAAGGAGCGTGTAAAAG 59.853 38.462 0.00 0.00 0.00 2.27
320 325 3.437049 AGATGAAAGGAGCGTGTAAAAGC 59.563 43.478 0.00 0.00 0.00 3.51
321 326 1.529438 TGAAAGGAGCGTGTAAAAGCG 59.471 47.619 0.00 0.00 38.61 4.68
322 327 1.529865 GAAAGGAGCGTGTAAAAGCGT 59.470 47.619 0.00 0.00 38.61 5.07
323 328 0.865769 AAGGAGCGTGTAAAAGCGTG 59.134 50.000 0.00 0.00 38.61 5.34
324 329 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
325 330 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
326 331 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
327 332 2.159881 GGAGCGTGTAAAAGCGTGTAAG 60.160 50.000 0.00 0.00 38.61 2.34
328 333 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
329 334 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
330 335 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
331 336 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
332 337 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
333 338 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
334 339 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
335 340 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
336 341 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
337 342 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
338 343 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
339 344 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
340 345 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
341 346 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
342 347 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
343 348 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
344 349 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
345 350 6.251589 CGTGTAAGTCTTTGTATGTCTAGCAG 59.748 42.308 0.00 0.00 0.00 4.24
346 351 7.091443 GTGTAAGTCTTTGTATGTCTAGCAGT 58.909 38.462 0.00 0.00 0.00 4.40
347 352 7.599245 GTGTAAGTCTTTGTATGTCTAGCAGTT 59.401 37.037 0.00 0.00 0.00 3.16
348 353 8.148351 TGTAAGTCTTTGTATGTCTAGCAGTTT 58.852 33.333 0.00 0.00 0.00 2.66
349 354 8.989980 GTAAGTCTTTGTATGTCTAGCAGTTTT 58.010 33.333 0.00 0.00 0.00 2.43
350 355 7.426929 AGTCTTTGTATGTCTAGCAGTTTTG 57.573 36.000 0.00 0.00 0.00 2.44
385 390 2.620115 CAGATACCAATTGAAGCGGCAT 59.380 45.455 7.12 0.00 0.00 4.40
468 473 3.121113 CCATTTTTGTGAATTTCCGACGC 59.879 43.478 0.00 0.00 0.00 5.19
504 509 8.856153 TGGTTGCATCTACTAGTTTTTATCAA 57.144 30.769 0.00 0.00 0.00 2.57
540 545 2.230508 GTGTCAATACTGTCACGGAGGA 59.769 50.000 0.00 0.00 33.06 3.71
612 644 0.460311 CCATCCTAAGCGTCGGTTCT 59.540 55.000 13.76 0.00 0.00 3.01
660 692 1.327303 TTGGGCGCAGAAATTTCAGT 58.673 45.000 19.99 0.00 0.00 3.41
675 707 1.153647 CAGTGGCCGACTTCGCATA 60.154 57.895 0.00 0.00 38.18 3.14
689 721 1.709147 CGCATAACCCTCACAGCAGC 61.709 60.000 0.00 0.00 0.00 5.25
690 722 0.677731 GCATAACCCTCACAGCAGCA 60.678 55.000 0.00 0.00 0.00 4.41
691 723 1.376543 CATAACCCTCACAGCAGCAG 58.623 55.000 0.00 0.00 0.00 4.24
744 776 3.124921 CGTGGGCGGGTTTAGCAG 61.125 66.667 0.00 0.00 36.08 4.24
745 777 3.440415 GTGGGCGGGTTTAGCAGC 61.440 66.667 0.00 0.00 36.08 5.25
748 780 2.587889 GGCGGGTTTAGCAGCCTA 59.412 61.111 14.47 0.00 45.67 3.93
749 781 1.523938 GGCGGGTTTAGCAGCCTAG 60.524 63.158 14.47 0.00 45.67 3.02
751 783 1.523938 CGGGTTTAGCAGCCTAGGC 60.524 63.158 27.19 27.19 41.47 3.93
759 791 2.739784 CAGCCTAGGCGGATGGAG 59.260 66.667 27.83 9.27 45.51 3.86
760 792 2.136878 CAGCCTAGGCGGATGGAGT 61.137 63.158 27.83 4.93 45.51 3.85
761 793 2.374830 CAGCCTAGGCGGATGGAGTG 62.375 65.000 27.83 14.13 45.51 3.51
762 794 3.142393 CCTAGGCGGATGGAGTGG 58.858 66.667 0.00 0.00 33.16 4.00
763 795 1.457643 CCTAGGCGGATGGAGTGGA 60.458 63.158 0.00 0.00 33.16 4.02
764 796 1.467678 CCTAGGCGGATGGAGTGGAG 61.468 65.000 0.00 0.00 33.16 3.86
765 797 0.757188 CTAGGCGGATGGAGTGGAGT 60.757 60.000 0.00 0.00 0.00 3.85
766 798 0.554305 TAGGCGGATGGAGTGGAGTA 59.446 55.000 0.00 0.00 0.00 2.59
767 799 1.043673 AGGCGGATGGAGTGGAGTAC 61.044 60.000 0.00 0.00 0.00 2.73
768 800 1.065928 GCGGATGGAGTGGAGTACG 59.934 63.158 0.00 0.00 0.00 3.67
769 801 1.734137 CGGATGGAGTGGAGTACGG 59.266 63.158 0.00 0.00 0.00 4.02
770 802 1.735376 CGGATGGAGTGGAGTACGGG 61.735 65.000 0.00 0.00 0.00 5.28
771 803 0.686769 GGATGGAGTGGAGTACGGGT 60.687 60.000 0.00 0.00 0.00 5.28
772 804 1.410648 GGATGGAGTGGAGTACGGGTA 60.411 57.143 0.00 0.00 0.00 3.69
773 805 1.680207 GATGGAGTGGAGTACGGGTAC 59.320 57.143 0.70 0.70 36.35 3.34
775 807 1.379642 GGAGTGGAGTACGGGTACGG 61.380 65.000 3.52 0.00 46.48 4.02
776 808 1.997928 GAGTGGAGTACGGGTACGGC 61.998 65.000 3.52 0.88 46.48 5.68
795 827 2.125431 CCGTGGTACCGGCGAAAT 60.125 61.111 24.39 0.00 41.78 2.17
874 907 2.289945 GGGGAGATGCCAGTATTAGCAG 60.290 54.545 0.00 0.00 43.38 4.24
912 2485 1.972660 AATCCTCTTCCGCTTCCCCG 61.973 60.000 0.00 0.00 0.00 5.73
930 2503 1.852067 CGCGCTGCTTAAAACCCAGT 61.852 55.000 5.56 0.00 0.00 4.00
963 2536 2.279517 CGTACTCTCCCGCCATGC 60.280 66.667 0.00 0.00 0.00 4.06
1092 2671 3.264897 CAGTATGCCGTGCTCCGC 61.265 66.667 0.00 0.00 34.38 5.54
1210 2792 1.506718 CGGCTGCAGAACTACGAGA 59.493 57.895 20.43 0.00 0.00 4.04
1280 2862 2.545113 GCAACTTCAGACGAGTGGTACA 60.545 50.000 0.00 0.00 0.00 2.90
1310 2915 1.091771 ATTCATTCTCCTGCACCGCG 61.092 55.000 0.00 0.00 0.00 6.46
1328 2933 3.592814 CCGCTCTATCCGACGCCA 61.593 66.667 0.00 0.00 0.00 5.69
1329 2934 2.411701 CGCTCTATCCGACGCCAA 59.588 61.111 0.00 0.00 0.00 4.52
1330 2935 1.944676 CGCTCTATCCGACGCCAAC 60.945 63.158 0.00 0.00 0.00 3.77
1331 2936 1.591863 GCTCTATCCGACGCCAACC 60.592 63.158 0.00 0.00 0.00 3.77
1332 2937 1.813859 CTCTATCCGACGCCAACCA 59.186 57.895 0.00 0.00 0.00 3.67
1333 2938 0.389391 CTCTATCCGACGCCAACCAT 59.611 55.000 0.00 0.00 0.00 3.55
1334 2939 0.828022 TCTATCCGACGCCAACCATT 59.172 50.000 0.00 0.00 0.00 3.16
1335 2940 1.208535 TCTATCCGACGCCAACCATTT 59.791 47.619 0.00 0.00 0.00 2.32
1336 2941 1.597663 CTATCCGACGCCAACCATTTC 59.402 52.381 0.00 0.00 0.00 2.17
1337 2942 1.366111 ATCCGACGCCAACCATTTCG 61.366 55.000 0.00 0.00 0.00 3.46
1338 2943 2.322081 CCGACGCCAACCATTTCGT 61.322 57.895 0.00 0.00 37.92 3.85
1339 2944 1.572447 CGACGCCAACCATTTCGTT 59.428 52.632 0.00 0.00 35.12 3.85
1340 2945 0.452122 CGACGCCAACCATTTCGTTC 60.452 55.000 0.00 0.00 35.12 3.95
1341 2946 0.109919 GACGCCAACCATTTCGTTCC 60.110 55.000 0.00 0.00 35.12 3.62
1342 2947 0.820074 ACGCCAACCATTTCGTTCCA 60.820 50.000 0.00 0.00 0.00 3.53
1343 2948 0.386731 CGCCAACCATTTCGTTCCAC 60.387 55.000 0.00 0.00 0.00 4.02
1344 2949 0.386731 GCCAACCATTTCGTTCCACG 60.387 55.000 0.00 0.00 44.19 4.94
1346 2951 2.144730 CCAACCATTTCGTTCCACGTA 58.855 47.619 0.00 0.00 43.14 3.57
1350 2955 3.934068 ACCATTTCGTTCCACGTATCTT 58.066 40.909 0.00 0.00 43.14 2.40
1351 2956 5.075858 ACCATTTCGTTCCACGTATCTTA 57.924 39.130 0.00 0.00 43.14 2.10
1353 2958 5.107133 CCATTTCGTTCCACGTATCTTAGT 58.893 41.667 0.00 0.00 43.14 2.24
1364 2969 7.726216 TCCACGTATCTTAGTTGATCAATCAT 58.274 34.615 12.12 3.84 36.56 2.45
1384 2989 9.622004 CAATCATATGAAGAGATTATTGTTGGC 57.378 33.333 9.99 0.00 31.26 4.52
1436 3052 3.812019 CCGAGTACCAGCGCGACT 61.812 66.667 12.10 2.89 33.64 4.18
1669 3285 0.395311 ACGAGACCTTCCAGCGGATA 60.395 55.000 0.00 0.00 0.00 2.59
1798 3414 1.141881 CGAGAAGCACGCCAGGTAT 59.858 57.895 0.00 0.00 0.00 2.73
1799 3415 0.384309 CGAGAAGCACGCCAGGTATA 59.616 55.000 0.00 0.00 0.00 1.47
1800 3416 1.854227 GAGAAGCACGCCAGGTATAC 58.146 55.000 0.00 0.00 0.00 1.47
1801 3417 0.102481 AGAAGCACGCCAGGTATACG 59.898 55.000 0.00 0.00 0.00 3.06
1802 3418 0.179119 GAAGCACGCCAGGTATACGT 60.179 55.000 0.00 0.00 41.45 3.57
1803 3419 0.179119 AAGCACGCCAGGTATACGTC 60.179 55.000 0.00 0.00 38.09 4.34
1804 3420 1.590792 GCACGCCAGGTATACGTCC 60.591 63.158 0.00 0.00 38.09 4.79
1805 3421 2.012902 GCACGCCAGGTATACGTCCT 62.013 60.000 0.00 0.00 38.09 3.85
1806 3422 1.311859 CACGCCAGGTATACGTCCTA 58.688 55.000 0.00 0.00 38.09 2.94
1808 3424 2.099592 CACGCCAGGTATACGTCCTAAA 59.900 50.000 0.00 0.00 38.09 1.85
1809 3425 2.099756 ACGCCAGGTATACGTCCTAAAC 59.900 50.000 0.00 0.00 34.35 2.01
1810 3426 2.544486 CGCCAGGTATACGTCCTAAACC 60.544 54.545 0.00 0.00 33.54 3.27
1815 3431 4.980434 CAGGTATACGTCCTAAACCAATCG 59.020 45.833 0.00 0.00 33.54 3.34
1820 3436 2.124903 CGTCCTAAACCAATCGATCGG 58.875 52.381 16.41 0.00 0.00 4.18
1826 3442 1.935933 AACCAATCGATCGGCACTAC 58.064 50.000 16.41 0.00 0.00 2.73
1827 3443 1.112113 ACCAATCGATCGGCACTACT 58.888 50.000 16.41 0.00 0.00 2.57
1831 3447 3.243434 CCAATCGATCGGCACTACTAACT 60.243 47.826 16.41 0.00 0.00 2.24
1832 3448 4.360563 CAATCGATCGGCACTACTAACTT 58.639 43.478 16.41 0.00 0.00 2.66
1833 3449 3.687572 TCGATCGGCACTACTAACTTC 57.312 47.619 16.41 0.00 0.00 3.01
1835 3451 3.106672 CGATCGGCACTACTAACTTCAC 58.893 50.000 7.38 0.00 0.00 3.18
1838 3454 1.993370 CGGCACTACTAACTTCACTGC 59.007 52.381 0.00 0.00 0.00 4.40
1839 3455 2.347731 GGCACTACTAACTTCACTGCC 58.652 52.381 0.00 0.00 36.23 4.85
1840 3456 2.347731 GCACTACTAACTTCACTGCCC 58.652 52.381 0.00 0.00 0.00 5.36
1841 3457 2.028020 GCACTACTAACTTCACTGCCCT 60.028 50.000 0.00 0.00 0.00 5.19
1842 3458 3.589988 CACTACTAACTTCACTGCCCTG 58.410 50.000 0.00 0.00 0.00 4.45
1843 3459 3.258372 CACTACTAACTTCACTGCCCTGA 59.742 47.826 0.00 0.00 0.00 3.86
1844 3460 2.841442 ACTAACTTCACTGCCCTGAC 57.159 50.000 0.00 0.00 0.00 3.51
1845 3461 2.330216 ACTAACTTCACTGCCCTGACT 58.670 47.619 0.00 0.00 0.00 3.41
1867 3483 0.108377 TGAGTGCTGACGTGTGTGTT 60.108 50.000 0.00 0.00 0.00 3.32
1868 3484 0.301687 GAGTGCTGACGTGTGTGTTG 59.698 55.000 0.00 0.00 0.00 3.33
1882 3500 1.202234 TGTGTTGTTCATGGCGTTGTG 60.202 47.619 0.00 0.00 0.00 3.33
1936 3558 2.574399 GTGGAGGGCGTCTCAGAC 59.426 66.667 7.19 0.00 44.19 3.51
1945 3567 1.602165 GGCGTCTCAGACAACGAGAAA 60.602 52.381 5.45 0.00 41.07 2.52
1963 3585 1.994507 AACAGGAGATCGACGAGGCG 61.995 60.000 3.01 0.00 0.00 5.52
1966 3588 2.409651 GAGATCGACGAGGCGCTT 59.590 61.111 7.64 0.00 0.00 4.68
2005 3627 1.509923 GTTCCGGACGGACGAGATT 59.490 57.895 13.76 0.00 45.11 2.40
2098 3720 2.747686 GTGCCCAAGTTCCTCCGA 59.252 61.111 0.00 0.00 0.00 4.55
2155 3777 3.446570 CGCCTCCCCTACGACGTT 61.447 66.667 5.50 0.00 0.00 3.99
2158 3780 1.679977 CCTCCCCTACGACGTTCCA 60.680 63.158 5.50 0.00 0.00 3.53
2327 3949 6.296087 GGTGCCATTCCTCAATCTCTATGATA 60.296 42.308 0.00 0.00 34.45 2.15
2375 4018 3.812156 TCTGGTTTCAGTTTCTGACGA 57.188 42.857 0.00 0.00 40.46 4.20
2480 4127 1.294138 CTCCCGGAAGTACGCCAAA 59.706 57.895 0.73 0.00 0.00 3.28
2494 4141 3.709987 ACGCCAAATACTACATCGGTAC 58.290 45.455 0.00 0.00 0.00 3.34
2512 4164 3.530260 GCATGCCCCATCCGGTTG 61.530 66.667 6.36 2.69 0.00 3.77
2522 4174 0.603707 CATCCGGTTGTGCTCACAGT 60.604 55.000 0.00 0.00 42.94 3.55
2524 4176 1.227527 CCGGTTGTGCTCACAGTCA 60.228 57.895 2.77 0.00 42.94 3.41
2525 4177 1.498865 CCGGTTGTGCTCACAGTCAC 61.499 60.000 2.77 0.00 42.94 3.67
2526 4178 0.809636 CGGTTGTGCTCACAGTCACA 60.810 55.000 2.77 0.00 42.94 3.58
2527 4179 0.940126 GGTTGTGCTCACAGTCACAG 59.060 55.000 2.77 0.00 43.15 3.66
2528 4180 1.473257 GGTTGTGCTCACAGTCACAGA 60.473 52.381 2.77 0.00 43.15 3.41
2529 4181 1.594862 GTTGTGCTCACAGTCACAGAC 59.405 52.381 2.77 0.00 43.15 3.51
2530 4182 1.114627 TGTGCTCACAGTCACAGACT 58.885 50.000 0.00 0.00 44.44 3.24
2550 4234 5.359009 AGACTGGATTAGCAAACATTCATGG 59.641 40.000 0.00 0.00 0.00 3.66
2552 4236 3.132646 TGGATTAGCAAACATTCATGGGC 59.867 43.478 0.00 0.00 0.00 5.36
2553 4237 3.385755 GGATTAGCAAACATTCATGGGCT 59.614 43.478 0.00 7.66 37.48 5.19
2554 4238 3.872511 TTAGCAAACATTCATGGGCTG 57.127 42.857 11.10 0.00 36.04 4.85
2555 4239 0.899720 AGCAAACATTCATGGGCTGG 59.100 50.000 0.00 0.00 34.23 4.85
2556 4240 0.609662 GCAAACATTCATGGGCTGGT 59.390 50.000 0.00 0.00 0.00 4.00
2557 4241 1.002315 GCAAACATTCATGGGCTGGTT 59.998 47.619 0.00 0.00 0.00 3.67
2558 4242 2.550639 GCAAACATTCATGGGCTGGTTT 60.551 45.455 0.00 0.00 0.00 3.27
2559 4243 3.306641 GCAAACATTCATGGGCTGGTTTA 60.307 43.478 0.00 0.00 0.00 2.01
2560 4244 4.623647 GCAAACATTCATGGGCTGGTTTAT 60.624 41.667 0.00 0.00 0.00 1.40
2561 4245 5.490159 CAAACATTCATGGGCTGGTTTATT 58.510 37.500 0.00 0.00 0.00 1.40
2735 4419 0.727398 CGAGGAGGTTGCCGAATTTC 59.273 55.000 0.00 0.00 0.00 2.17
2736 4420 1.821216 GAGGAGGTTGCCGAATTTCA 58.179 50.000 0.00 0.00 0.00 2.69
2748 4435 3.504863 CCGAATTTCATTTCCACTGCAG 58.495 45.455 13.48 13.48 0.00 4.41
2754 4441 2.362736 TCATTTCCACTGCAGATGAGC 58.637 47.619 23.35 0.00 0.00 4.26
2757 4444 3.701205 TTTCCACTGCAGATGAGCTTA 57.299 42.857 23.35 0.00 34.99 3.09
2759 4446 3.257469 TCCACTGCAGATGAGCTTAAG 57.743 47.619 23.35 0.00 34.99 1.85
2760 4447 2.833943 TCCACTGCAGATGAGCTTAAGA 59.166 45.455 23.35 3.31 34.99 2.10
2762 4449 4.080695 TCCACTGCAGATGAGCTTAAGAAT 60.081 41.667 23.35 0.00 34.99 2.40
2763 4450 5.129320 TCCACTGCAGATGAGCTTAAGAATA 59.871 40.000 23.35 0.00 34.99 1.75
2765 4452 6.047870 CACTGCAGATGAGCTTAAGAATACT 58.952 40.000 23.35 0.00 34.99 2.12
2766 4453 6.538021 CACTGCAGATGAGCTTAAGAATACTT 59.462 38.462 23.35 0.00 36.47 2.24
2767 4454 6.538021 ACTGCAGATGAGCTTAAGAATACTTG 59.462 38.462 23.35 0.00 35.16 3.16
2768 4455 5.295292 TGCAGATGAGCTTAAGAATACTTGC 59.705 40.000 6.67 9.18 35.16 4.01
2770 4457 6.703607 GCAGATGAGCTTAAGAATACTTGCTA 59.296 38.462 6.67 0.00 36.15 3.49
2771 4458 7.095691 GCAGATGAGCTTAAGAATACTTGCTAG 60.096 40.741 6.67 0.00 36.15 3.42
2773 4460 8.700051 AGATGAGCTTAAGAATACTTGCTAGAA 58.300 33.333 6.67 0.00 36.15 2.10
2775 4462 8.879342 TGAGCTTAAGAATACTTGCTAGAATC 57.121 34.615 6.67 0.00 36.15 2.52
2777 4464 9.319143 GAGCTTAAGAATACTTGCTAGAATCAA 57.681 33.333 6.67 0.00 36.15 2.57
2790 4477 7.582667 TGCTAGAATCAAGCATAGTACAGTA 57.417 36.000 0.00 0.00 44.78 2.74
2791 4478 7.426410 TGCTAGAATCAAGCATAGTACAGTAC 58.574 38.462 2.05 2.05 44.78 2.73
2792 4479 7.068226 TGCTAGAATCAAGCATAGTACAGTACA 59.932 37.037 13.37 0.00 44.78 2.90
2799 4486 9.618890 ATCAAGCATAGTACAGTACATTTGATT 57.381 29.630 13.37 8.86 29.96 2.57
2800 4487 8.882736 TCAAGCATAGTACAGTACATTTGATTG 58.117 33.333 21.01 21.01 34.64 2.67
2804 4491 8.331022 GCATAGTACAGTACATTTGATTGAGTG 58.669 37.037 13.37 0.00 0.00 3.51
2811 4498 8.150945 ACAGTACATTTGATTGAGTGTTAGTCT 58.849 33.333 0.00 0.00 0.00 3.24
2816 4503 6.647212 TTTGATTGAGTGTTAGTCTATGCG 57.353 37.500 0.00 0.00 0.00 4.73
2890 4581 1.264749 ACTGCGGGGACAAGCTGATA 61.265 55.000 0.00 0.00 36.63 2.15
2986 4677 2.264794 GAGTCGGACCGCCACATT 59.735 61.111 9.66 0.00 0.00 2.71
4054 5837 0.963856 AGATGTACGACGAGTGGCCA 60.964 55.000 0.00 0.00 0.00 5.36
4153 5936 1.001248 CCTCGTCCCCCAAGACCTA 59.999 63.158 0.00 0.00 32.91 3.08
4232 6015 3.634568 AGGTAAATGAGCTCTCGATCG 57.365 47.619 16.19 9.36 0.00 3.69
4259 6042 2.256461 CCTTCGGCTGCTTGCAAC 59.744 61.111 0.00 0.00 45.15 4.17
4623 6415 0.541392 ATGCAGAACACGGGCTGATA 59.459 50.000 0.00 0.00 34.06 2.15
4624 6416 0.323302 TGCAGAACACGGGCTGATAA 59.677 50.000 0.00 0.00 34.06 1.75
4633 6425 3.381272 ACACGGGCTGATAATGGATTTTG 59.619 43.478 0.00 0.00 0.00 2.44
4643 6435 3.274281 AATGGATTTTGGGGTGGACTT 57.726 42.857 0.00 0.00 0.00 3.01
4646 6438 1.544246 GGATTTTGGGGTGGACTTTCG 59.456 52.381 0.00 0.00 0.00 3.46
4653 6458 1.546998 GGGGTGGACTTTCGTGGATTT 60.547 52.381 0.00 0.00 0.00 2.17
4660 6465 3.139077 GACTTTCGTGGATTTGTGACCT 58.861 45.455 0.00 0.00 0.00 3.85
4662 6467 3.951680 ACTTTCGTGGATTTGTGACCTTT 59.048 39.130 0.00 0.00 0.00 3.11
4694 6499 4.213694 TCTGAATAGTAGAAGTCGATCGGC 59.786 45.833 12.83 12.83 0.00 5.54
4782 6587 3.914426 AGAAGGATTGCCGTGACTTAT 57.086 42.857 0.00 0.00 39.96 1.73
5085 6893 6.586463 CGTGCTACTCTTTCTCTCACAAAATA 59.414 38.462 0.00 0.00 0.00 1.40
5175 6983 6.152661 CCAATATTGTCACACCATAACCTTGT 59.847 38.462 14.25 0.00 0.00 3.16
5291 7099 7.284919 TCAGTACTTGATCTTGACACAGTAA 57.715 36.000 0.00 0.00 0.00 2.24
5331 7139 1.418264 TGACACGAGGTTTGATCCCAA 59.582 47.619 0.00 0.00 0.00 4.12
5358 7166 2.223803 ACAAAACCACCTGTTGACCA 57.776 45.000 0.00 0.00 37.23 4.02
5366 7174 3.055094 ACCACCTGTTGACCATCTATCAC 60.055 47.826 0.00 0.00 0.00 3.06
5469 7277 8.778059 TCCCATTGTAAACTTTAGATACCTCAT 58.222 33.333 0.00 0.00 0.00 2.90
5584 7392 5.961395 ACGTTAAATATTGTAGAGCACCG 57.039 39.130 0.00 0.00 0.00 4.94
5592 7400 0.032952 TGTAGAGCACCGACAACACC 59.967 55.000 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.914644 CCATCTCTCAAAGCCCCAGA 59.085 55.000 0.00 0.00 0.00 3.86
23 24 9.459640 CAAAATATGCATTACCATCTCTCAAAG 57.540 33.333 3.54 0.00 0.00 2.77
24 25 9.187996 TCAAAATATGCATTACCATCTCTCAAA 57.812 29.630 3.54 0.00 0.00 2.69
27 28 9.006839 TCATCAAAATATGCATTACCATCTCTC 57.993 33.333 3.54 0.00 0.00 3.20
163 168 3.970610 CGTGTAGCATTGCAGATATTTGC 59.029 43.478 11.91 11.19 44.33 3.68
164 169 5.160699 ACGTGTAGCATTGCAGATATTTG 57.839 39.130 11.91 0.00 0.00 2.32
165 170 5.815222 TGTACGTGTAGCATTGCAGATATTT 59.185 36.000 11.91 0.00 0.00 1.40
166 171 5.356426 TGTACGTGTAGCATTGCAGATATT 58.644 37.500 11.91 0.00 0.00 1.28
167 172 4.944048 TGTACGTGTAGCATTGCAGATAT 58.056 39.130 11.91 0.00 0.00 1.63
168 173 4.379339 TGTACGTGTAGCATTGCAGATA 57.621 40.909 11.91 0.00 0.00 1.98
169 174 3.245518 TGTACGTGTAGCATTGCAGAT 57.754 42.857 11.91 0.00 0.00 2.90
170 175 2.734276 TGTACGTGTAGCATTGCAGA 57.266 45.000 11.91 0.00 0.00 4.26
171 176 3.479006 GTTTGTACGTGTAGCATTGCAG 58.521 45.455 11.91 0.00 0.00 4.41
172 177 2.096664 CGTTTGTACGTGTAGCATTGCA 60.097 45.455 11.91 0.00 42.72 4.08
173 178 2.492001 CGTTTGTACGTGTAGCATTGC 58.508 47.619 0.00 0.00 42.72 3.56
185 190 7.354257 TGTAAAAGCCTGTAAATCGTTTGTAC 58.646 34.615 0.00 0.00 0.00 2.90
186 191 7.308109 CCTGTAAAAGCCTGTAAATCGTTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
187 192 6.380095 TGTAAAAGCCTGTAAATCGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
188 193 5.856455 CCTGTAAAAGCCTGTAAATCGTTTG 59.144 40.000 0.00 0.00 0.00 2.93
189 194 5.766174 TCCTGTAAAAGCCTGTAAATCGTTT 59.234 36.000 0.00 0.00 0.00 3.60
190 195 5.310451 TCCTGTAAAAGCCTGTAAATCGTT 58.690 37.500 0.00 0.00 0.00 3.85
191 196 4.901868 TCCTGTAAAAGCCTGTAAATCGT 58.098 39.130 0.00 0.00 0.00 3.73
192 197 5.220854 CCATCCTGTAAAAGCCTGTAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
193 198 5.652452 ACCATCCTGTAAAAGCCTGTAAATC 59.348 40.000 0.00 0.00 0.00 2.17
194 199 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
195 200 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
196 201 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
197 202 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
198 203 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
199 204 5.888161 AGATTAACCATCCTGTAAAAGCCTG 59.112 40.000 0.00 0.00 31.20 4.85
200 205 6.079712 AGATTAACCATCCTGTAAAAGCCT 57.920 37.500 0.00 0.00 31.20 4.58
201 206 6.377146 TCAAGATTAACCATCCTGTAAAAGCC 59.623 38.462 0.00 0.00 31.20 4.35
202 207 7.391148 TCAAGATTAACCATCCTGTAAAAGC 57.609 36.000 0.00 0.00 31.20 3.51
203 208 9.793252 CAATCAAGATTAACCATCCTGTAAAAG 57.207 33.333 0.00 0.00 31.20 2.27
204 209 8.748412 CCAATCAAGATTAACCATCCTGTAAAA 58.252 33.333 0.00 0.00 31.20 1.52
205 210 7.893302 ACCAATCAAGATTAACCATCCTGTAAA 59.107 33.333 0.00 0.00 31.20 2.01
206 211 7.410174 ACCAATCAAGATTAACCATCCTGTAA 58.590 34.615 0.00 0.00 31.20 2.41
207 212 6.969043 ACCAATCAAGATTAACCATCCTGTA 58.031 36.000 0.00 0.00 31.20 2.74
208 213 5.831103 ACCAATCAAGATTAACCATCCTGT 58.169 37.500 0.00 0.00 31.20 4.00
209 214 5.887598 TGACCAATCAAGATTAACCATCCTG 59.112 40.000 0.00 0.00 31.20 3.86
210 215 6.078456 TGACCAATCAAGATTAACCATCCT 57.922 37.500 0.00 0.00 31.20 3.24
211 216 6.773976 TTGACCAATCAAGATTAACCATCC 57.226 37.500 0.00 0.00 40.01 3.51
224 229 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
225 230 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
226 231 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
227 232 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
228 233 1.622607 CCCCGCTCACCTATTGACCA 61.623 60.000 0.00 0.00 0.00 4.02
229 234 1.146263 CCCCGCTCACCTATTGACC 59.854 63.158 0.00 0.00 0.00 4.02
230 235 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
231 236 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
232 237 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
233 238 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
271 276 3.026694 CCAATCACAAATCTCTTCCCCC 58.973 50.000 0.00 0.00 0.00 5.40
272 277 3.701664 ACCAATCACAAATCTCTTCCCC 58.298 45.455 0.00 0.00 0.00 4.81
273 278 4.524328 ACAACCAATCACAAATCTCTTCCC 59.476 41.667 0.00 0.00 0.00 3.97
274 279 5.712152 ACAACCAATCACAAATCTCTTCC 57.288 39.130 0.00 0.00 0.00 3.46
275 280 8.099364 TCTAACAACCAATCACAAATCTCTTC 57.901 34.615 0.00 0.00 0.00 2.87
276 281 8.517878 CATCTAACAACCAATCACAAATCTCTT 58.482 33.333 0.00 0.00 0.00 2.85
277 282 7.884877 TCATCTAACAACCAATCACAAATCTCT 59.115 33.333 0.00 0.00 0.00 3.10
278 283 8.044060 TCATCTAACAACCAATCACAAATCTC 57.956 34.615 0.00 0.00 0.00 2.75
279 284 8.408043 TTCATCTAACAACCAATCACAAATCT 57.592 30.769 0.00 0.00 0.00 2.40
280 285 9.132521 CTTTCATCTAACAACCAATCACAAATC 57.867 33.333 0.00 0.00 0.00 2.17
281 286 8.090214 CCTTTCATCTAACAACCAATCACAAAT 58.910 33.333 0.00 0.00 0.00 2.32
282 287 7.286546 TCCTTTCATCTAACAACCAATCACAAA 59.713 33.333 0.00 0.00 0.00 2.83
283 288 6.775142 TCCTTTCATCTAACAACCAATCACAA 59.225 34.615 0.00 0.00 0.00 3.33
284 289 6.303054 TCCTTTCATCTAACAACCAATCACA 58.697 36.000 0.00 0.00 0.00 3.58
285 290 6.623767 GCTCCTTTCATCTAACAACCAATCAC 60.624 42.308 0.00 0.00 0.00 3.06
286 291 5.415701 GCTCCTTTCATCTAACAACCAATCA 59.584 40.000 0.00 0.00 0.00 2.57
287 292 5.447818 CGCTCCTTTCATCTAACAACCAATC 60.448 44.000 0.00 0.00 0.00 2.67
288 293 4.396166 CGCTCCTTTCATCTAACAACCAAT 59.604 41.667 0.00 0.00 0.00 3.16
289 294 3.751175 CGCTCCTTTCATCTAACAACCAA 59.249 43.478 0.00 0.00 0.00 3.67
290 295 3.244422 ACGCTCCTTTCATCTAACAACCA 60.244 43.478 0.00 0.00 0.00 3.67
291 296 3.125316 CACGCTCCTTTCATCTAACAACC 59.875 47.826 0.00 0.00 0.00 3.77
292 297 3.746492 ACACGCTCCTTTCATCTAACAAC 59.254 43.478 0.00 0.00 0.00 3.32
293 298 4.002906 ACACGCTCCTTTCATCTAACAA 57.997 40.909 0.00 0.00 0.00 2.83
294 299 3.678056 ACACGCTCCTTTCATCTAACA 57.322 42.857 0.00 0.00 0.00 2.41
295 300 6.476243 TTTTACACGCTCCTTTCATCTAAC 57.524 37.500 0.00 0.00 0.00 2.34
296 301 5.121768 GCTTTTACACGCTCCTTTCATCTAA 59.878 40.000 0.00 0.00 0.00 2.10
297 302 4.630069 GCTTTTACACGCTCCTTTCATCTA 59.370 41.667 0.00 0.00 0.00 1.98
298 303 3.437049 GCTTTTACACGCTCCTTTCATCT 59.563 43.478 0.00 0.00 0.00 2.90
299 304 3.725010 CGCTTTTACACGCTCCTTTCATC 60.725 47.826 0.00 0.00 0.00 2.92
300 305 2.159627 CGCTTTTACACGCTCCTTTCAT 59.840 45.455 0.00 0.00 0.00 2.57
301 306 1.529438 CGCTTTTACACGCTCCTTTCA 59.471 47.619 0.00 0.00 0.00 2.69
302 307 1.529865 ACGCTTTTACACGCTCCTTTC 59.470 47.619 0.00 0.00 0.00 2.62
303 308 1.263217 CACGCTTTTACACGCTCCTTT 59.737 47.619 0.00 0.00 0.00 3.11
304 309 0.865769 CACGCTTTTACACGCTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
305 310 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
306 311 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
307 312 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
308 313 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
309 314 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
310 315 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
311 316 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
312 317 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
313 318 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
314 319 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
315 320 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
316 321 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
317 322 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
318 323 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
319 324 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
320 325 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
321 326 7.091443 ACTGCTAGACATACAAAGACTTACAC 58.909 38.462 0.00 0.00 0.00 2.90
322 327 7.228314 ACTGCTAGACATACAAAGACTTACA 57.772 36.000 0.00 0.00 0.00 2.41
323 328 8.535690 AAACTGCTAGACATACAAAGACTTAC 57.464 34.615 0.00 0.00 0.00 2.34
324 329 8.988934 CAAAACTGCTAGACATACAAAGACTTA 58.011 33.333 0.00 0.00 0.00 2.24
325 330 7.041098 CCAAAACTGCTAGACATACAAAGACTT 60.041 37.037 0.00 0.00 0.00 3.01
326 331 6.428159 CCAAAACTGCTAGACATACAAAGACT 59.572 38.462 0.00 0.00 0.00 3.24
327 332 6.603095 CCAAAACTGCTAGACATACAAAGAC 58.397 40.000 0.00 0.00 0.00 3.01
328 333 5.181245 GCCAAAACTGCTAGACATACAAAGA 59.819 40.000 0.00 0.00 0.00 2.52
329 334 5.393962 GCCAAAACTGCTAGACATACAAAG 58.606 41.667 0.00 0.00 0.00 2.77
330 335 4.083537 CGCCAAAACTGCTAGACATACAAA 60.084 41.667 0.00 0.00 0.00 2.83
331 336 3.435327 CGCCAAAACTGCTAGACATACAA 59.565 43.478 0.00 0.00 0.00 2.41
332 337 3.000041 CGCCAAAACTGCTAGACATACA 59.000 45.455 0.00 0.00 0.00 2.29
333 338 3.259064 TCGCCAAAACTGCTAGACATAC 58.741 45.455 0.00 0.00 0.00 2.39
334 339 3.603158 TCGCCAAAACTGCTAGACATA 57.397 42.857 0.00 0.00 0.00 2.29
335 340 2.472695 TCGCCAAAACTGCTAGACAT 57.527 45.000 0.00 0.00 0.00 3.06
336 341 2.248280 TTCGCCAAAACTGCTAGACA 57.752 45.000 0.00 0.00 0.00 3.41
337 342 4.811557 AGATATTCGCCAAAACTGCTAGAC 59.188 41.667 0.00 0.00 0.00 2.59
338 343 4.811024 CAGATATTCGCCAAAACTGCTAGA 59.189 41.667 0.00 0.00 0.00 2.43
339 344 4.572389 ACAGATATTCGCCAAAACTGCTAG 59.428 41.667 0.00 0.00 0.00 3.42
340 345 4.332543 CACAGATATTCGCCAAAACTGCTA 59.667 41.667 0.00 0.00 0.00 3.49
341 346 3.127548 CACAGATATTCGCCAAAACTGCT 59.872 43.478 0.00 0.00 0.00 4.24
342 347 3.429085 CACAGATATTCGCCAAAACTGC 58.571 45.455 0.00 0.00 0.00 4.40
343 348 3.119884 TGCACAGATATTCGCCAAAACTG 60.120 43.478 0.00 0.00 0.00 3.16
344 349 3.081061 TGCACAGATATTCGCCAAAACT 58.919 40.909 0.00 0.00 0.00 2.66
345 350 3.126858 TCTGCACAGATATTCGCCAAAAC 59.873 43.478 0.00 0.00 31.41 2.43
346 351 3.342719 TCTGCACAGATATTCGCCAAAA 58.657 40.909 0.00 0.00 31.41 2.44
347 352 2.984562 TCTGCACAGATATTCGCCAAA 58.015 42.857 0.00 0.00 31.41 3.28
348 353 2.689553 TCTGCACAGATATTCGCCAA 57.310 45.000 0.00 0.00 31.41 4.52
349 354 2.916702 ATCTGCACAGATATTCGCCA 57.083 45.000 11.40 0.00 45.69 5.69
468 473 7.741027 AGTAGATGCAACCAAATATCATCTG 57.259 36.000 11.87 0.00 42.46 2.90
504 509 2.653726 TGACACTGGACAGCAACAATT 58.346 42.857 0.00 0.00 0.00 2.32
540 545 0.039764 GGGGGAAGCTGCTAAACCTT 59.960 55.000 0.90 0.00 0.00 3.50
660 692 1.448893 GGTTATGCGAAGTCGGCCA 60.449 57.895 2.24 0.00 40.23 5.36
675 707 2.282040 GCTGCTGCTGTGAGGGTT 60.282 61.111 8.53 0.00 36.03 4.11
689 721 1.553706 AAATCTCCAGGCCTTTGCTG 58.446 50.000 0.00 0.00 37.74 4.41
690 722 1.897802 CAAAATCTCCAGGCCTTTGCT 59.102 47.619 0.00 0.00 37.74 3.91
691 723 1.066645 CCAAAATCTCCAGGCCTTTGC 60.067 52.381 0.00 0.00 0.00 3.68
732 764 1.523938 CCTAGGCTGCTAAACCCGC 60.524 63.158 0.00 0.00 0.00 6.13
734 766 1.523938 CGCCTAGGCTGCTAAACCC 60.524 63.158 30.55 0.00 39.32 4.11
738 770 1.748403 CATCCGCCTAGGCTGCTAA 59.252 57.895 30.55 9.79 40.77 3.09
739 771 2.210013 CCATCCGCCTAGGCTGCTA 61.210 63.158 30.55 13.72 40.77 3.49
740 772 3.554342 CCATCCGCCTAGGCTGCT 61.554 66.667 30.55 14.11 40.77 4.24
742 774 2.136878 ACTCCATCCGCCTAGGCTG 61.137 63.158 30.55 24.64 40.77 4.85
743 775 2.136878 CACTCCATCCGCCTAGGCT 61.137 63.158 30.55 10.41 40.77 4.58
744 776 2.423446 CACTCCATCCGCCTAGGC 59.577 66.667 24.75 24.75 40.77 3.93
745 777 1.457643 TCCACTCCATCCGCCTAGG 60.458 63.158 3.67 3.67 42.97 3.02
746 778 0.757188 ACTCCACTCCATCCGCCTAG 60.757 60.000 0.00 0.00 0.00 3.02
747 779 0.554305 TACTCCACTCCATCCGCCTA 59.446 55.000 0.00 0.00 0.00 3.93
748 780 1.043673 GTACTCCACTCCATCCGCCT 61.044 60.000 0.00 0.00 0.00 5.52
749 781 1.442148 GTACTCCACTCCATCCGCC 59.558 63.158 0.00 0.00 0.00 6.13
751 783 1.734137 CCGTACTCCACTCCATCCG 59.266 63.158 0.00 0.00 0.00 4.18
752 784 0.686769 ACCCGTACTCCACTCCATCC 60.687 60.000 0.00 0.00 0.00 3.51
753 785 1.680207 GTACCCGTACTCCACTCCATC 59.320 57.143 0.00 0.00 33.45 3.51
754 786 1.772836 GTACCCGTACTCCACTCCAT 58.227 55.000 0.00 0.00 33.45 3.41
755 787 0.677731 CGTACCCGTACTCCACTCCA 60.678 60.000 3.66 0.00 34.04 3.86
757 789 1.997928 GCCGTACCCGTACTCCACTC 61.998 65.000 3.66 0.00 34.04 3.51
758 790 2.048603 GCCGTACCCGTACTCCACT 61.049 63.158 3.66 0.00 34.04 4.00
759 791 2.491621 GCCGTACCCGTACTCCAC 59.508 66.667 3.66 0.00 34.04 4.02
760 792 2.755469 GGCCGTACCCGTACTCCA 60.755 66.667 3.66 0.00 34.04 3.86
874 907 3.070576 GGGTCATTGGGTGGCTGC 61.071 66.667 0.00 0.00 31.47 5.25
912 2485 0.387239 CACTGGGTTTTAAGCAGCGC 60.387 55.000 0.00 0.00 0.00 5.92
963 2536 2.586079 CGCCACGTATCAGCAGGG 60.586 66.667 0.00 0.00 0.00 4.45
1280 2862 5.623824 GCAGGAGAATGAATGAATTGCTTGT 60.624 40.000 0.00 0.00 0.00 3.16
1312 2917 1.944676 GTTGGCGTCGGATAGAGCG 60.945 63.158 0.00 0.00 0.00 5.03
1313 2918 1.591863 GGTTGGCGTCGGATAGAGC 60.592 63.158 0.00 0.00 0.00 4.09
1314 2919 0.389391 ATGGTTGGCGTCGGATAGAG 59.611 55.000 0.00 0.00 0.00 2.43
1315 2920 0.828022 AATGGTTGGCGTCGGATAGA 59.172 50.000 0.00 0.00 0.00 1.98
1317 2922 1.658994 GAAATGGTTGGCGTCGGATA 58.341 50.000 0.00 0.00 0.00 2.59
1318 2923 1.366111 CGAAATGGTTGGCGTCGGAT 61.366 55.000 0.00 0.00 0.00 4.18
1319 2924 2.030401 CGAAATGGTTGGCGTCGGA 61.030 57.895 0.00 0.00 0.00 4.55
1320 2925 1.847890 AACGAAATGGTTGGCGTCGG 61.848 55.000 0.00 0.00 35.74 4.79
1321 2926 0.452122 GAACGAAATGGTTGGCGTCG 60.452 55.000 0.00 0.00 35.74 5.12
1322 2927 0.109919 GGAACGAAATGGTTGGCGTC 60.110 55.000 0.00 0.00 35.74 5.19
1323 2928 0.820074 TGGAACGAAATGGTTGGCGT 60.820 50.000 0.00 0.00 38.81 5.68
1324 2929 0.386731 GTGGAACGAAATGGTTGGCG 60.387 55.000 0.00 0.00 0.00 5.69
1325 2930 3.489813 GTGGAACGAAATGGTTGGC 57.510 52.632 0.00 0.00 0.00 4.52
1337 2942 7.491372 TGATTGATCAACTAAGATACGTGGAAC 59.509 37.037 11.07 0.00 33.08 3.62
1338 2943 7.552459 TGATTGATCAACTAAGATACGTGGAA 58.448 34.615 11.07 0.00 33.08 3.53
1339 2944 7.107639 TGATTGATCAACTAAGATACGTGGA 57.892 36.000 11.07 0.00 33.08 4.02
1340 2945 7.953158 ATGATTGATCAACTAAGATACGTGG 57.047 36.000 11.07 0.00 40.69 4.94
1364 2969 4.211164 CGCGCCAACAATAATCTCTTCATA 59.789 41.667 0.00 0.00 0.00 2.15
1367 2972 2.286418 CCGCGCCAACAATAATCTCTTC 60.286 50.000 0.00 0.00 0.00 2.87
1374 2979 2.193865 CTGCACCGCGCCAACAATAA 62.194 55.000 0.00 0.00 41.33 1.40
1409 3025 3.066814 GTACTCGGCGGACACCCT 61.067 66.667 7.21 0.00 0.00 4.34
1642 3258 1.096416 GGAAGGTCTCGTCGATGTCT 58.904 55.000 4.21 0.00 0.00 3.41
1798 3414 3.243168 CCGATCGATTGGTTTAGGACGTA 60.243 47.826 21.95 0.00 0.00 3.57
1799 3415 2.480759 CCGATCGATTGGTTTAGGACGT 60.481 50.000 21.95 0.00 0.00 4.34
1800 3416 2.124903 CCGATCGATTGGTTTAGGACG 58.875 52.381 21.95 6.21 0.00 4.79
1801 3417 1.865340 GCCGATCGATTGGTTTAGGAC 59.135 52.381 28.67 9.97 33.62 3.85
1802 3418 1.483004 TGCCGATCGATTGGTTTAGGA 59.517 47.619 28.67 4.91 33.62 2.94
1803 3419 1.597663 GTGCCGATCGATTGGTTTAGG 59.402 52.381 28.67 11.70 33.62 2.69
1804 3420 2.550978 AGTGCCGATCGATTGGTTTAG 58.449 47.619 28.67 7.41 33.62 1.85
1805 3421 2.684001 AGTGCCGATCGATTGGTTTA 57.316 45.000 28.67 15.27 33.62 2.01
1806 3422 2.093658 AGTAGTGCCGATCGATTGGTTT 60.094 45.455 28.67 18.01 33.62 3.27
1808 3424 1.112113 AGTAGTGCCGATCGATTGGT 58.888 50.000 28.67 14.61 33.62 3.67
1809 3425 3.050619 GTTAGTAGTGCCGATCGATTGG 58.949 50.000 25.26 25.26 0.00 3.16
1810 3426 3.966154 AGTTAGTAGTGCCGATCGATTG 58.034 45.455 18.66 5.59 0.00 2.67
1815 3431 4.106197 CAGTGAAGTTAGTAGTGCCGATC 58.894 47.826 0.00 0.00 0.00 3.69
1820 3436 2.028020 AGGGCAGTGAAGTTAGTAGTGC 60.028 50.000 0.00 0.00 39.44 4.40
1826 3442 3.511934 ACTAGTCAGGGCAGTGAAGTTAG 59.488 47.826 0.00 0.00 0.00 2.34
1827 3443 3.258372 CACTAGTCAGGGCAGTGAAGTTA 59.742 47.826 0.00 0.00 41.80 2.24
1831 3447 1.895798 CTCACTAGTCAGGGCAGTGAA 59.104 52.381 0.00 0.00 45.85 3.18
1832 3448 1.203063 ACTCACTAGTCAGGGCAGTGA 60.203 52.381 0.00 3.84 44.78 3.41
1833 3449 1.067283 CACTCACTAGTCAGGGCAGTG 60.067 57.143 0.00 0.00 40.83 3.66
1835 3451 0.108424 GCACTCACTAGTCAGGGCAG 60.108 60.000 17.06 0.00 31.97 4.85
1838 3454 1.203523 GTCAGCACTCACTAGTCAGGG 59.796 57.143 0.00 0.00 31.97 4.45
1839 3455 1.135546 CGTCAGCACTCACTAGTCAGG 60.136 57.143 0.00 0.00 31.97 3.86
1840 3456 1.537638 ACGTCAGCACTCACTAGTCAG 59.462 52.381 0.00 0.00 31.97 3.51
1841 3457 1.266989 CACGTCAGCACTCACTAGTCA 59.733 52.381 0.00 0.00 31.97 3.41
1842 3458 1.267261 ACACGTCAGCACTCACTAGTC 59.733 52.381 0.00 0.00 31.97 2.59
1843 3459 1.001268 CACACGTCAGCACTCACTAGT 60.001 52.381 0.00 0.00 35.91 2.57
1844 3460 1.001268 ACACACGTCAGCACTCACTAG 60.001 52.381 0.00 0.00 0.00 2.57
1845 3461 1.029681 ACACACGTCAGCACTCACTA 58.970 50.000 0.00 0.00 0.00 2.74
1867 3483 0.660488 GTGACACAACGCCATGAACA 59.340 50.000 0.00 0.00 0.00 3.18
1868 3484 0.944386 AGTGACACAACGCCATGAAC 59.056 50.000 8.59 0.00 0.00 3.18
1882 3500 1.517257 CGTCCGGATGCTGAGTGAC 60.517 63.158 11.52 0.00 0.00 3.67
1930 3552 3.004839 TCTCCTGTTTCTCGTTGTCTGAG 59.995 47.826 0.00 0.00 34.72 3.35
1933 3555 3.366476 CGATCTCCTGTTTCTCGTTGTCT 60.366 47.826 0.00 0.00 0.00 3.41
1936 3558 2.917971 GTCGATCTCCTGTTTCTCGTTG 59.082 50.000 0.00 0.00 0.00 4.10
1945 3567 2.473760 CGCCTCGTCGATCTCCTGT 61.474 63.158 0.00 0.00 0.00 4.00
1963 3585 0.758123 CCAGGATCTCCCTCTGAAGC 59.242 60.000 0.00 0.00 45.60 3.86
1966 3588 1.456518 CGCCAGGATCTCCCTCTGA 60.457 63.158 0.00 0.00 45.60 3.27
2155 3777 2.461695 GAGGAGAACTGGATGAGTGGA 58.538 52.381 0.00 0.00 34.02 4.02
2158 3780 2.465813 CAGGAGGAGAACTGGATGAGT 58.534 52.381 0.00 0.00 35.94 3.41
2327 3949 0.670546 CAGAACCGGCATCGACTTGT 60.671 55.000 0.00 0.00 39.00 3.16
2375 4018 0.668096 CACAAGCAAATGCATGGCGT 60.668 50.000 14.27 11.06 43.30 5.68
2480 4127 2.352421 GGCATGCGTACCGATGTAGTAT 60.352 50.000 12.44 0.00 0.00 2.12
2512 4164 3.976339 AGTCTGTGACTGTGAGCAC 57.024 52.632 0.00 0.00 41.76 4.40
2522 4174 4.350368 TGTTTGCTAATCCAGTCTGTGA 57.650 40.909 0.00 0.00 0.00 3.58
2524 4176 5.316167 TGAATGTTTGCTAATCCAGTCTGT 58.684 37.500 0.00 0.00 0.00 3.41
2525 4177 5.885230 TGAATGTTTGCTAATCCAGTCTG 57.115 39.130 0.00 0.00 0.00 3.51
2526 4178 5.359009 CCATGAATGTTTGCTAATCCAGTCT 59.641 40.000 0.00 0.00 0.00 3.24
2527 4179 5.450965 CCCATGAATGTTTGCTAATCCAGTC 60.451 44.000 0.00 0.00 0.00 3.51
2528 4180 4.403432 CCCATGAATGTTTGCTAATCCAGT 59.597 41.667 0.00 0.00 0.00 4.00
2529 4181 4.738541 GCCCATGAATGTTTGCTAATCCAG 60.739 45.833 0.00 0.00 0.00 3.86
2530 4182 3.132646 GCCCATGAATGTTTGCTAATCCA 59.867 43.478 0.00 0.00 0.00 3.41
2531 4183 3.385755 AGCCCATGAATGTTTGCTAATCC 59.614 43.478 0.00 0.00 0.00 3.01
2550 4234 2.716217 ACTCTGCAGAATAAACCAGCC 58.284 47.619 18.85 0.00 0.00 4.85
2552 4236 5.241506 TCCAAAACTCTGCAGAATAAACCAG 59.758 40.000 18.85 5.82 0.00 4.00
2553 4237 5.136828 TCCAAAACTCTGCAGAATAAACCA 58.863 37.500 18.85 0.00 0.00 3.67
2554 4238 5.705609 TCCAAAACTCTGCAGAATAAACC 57.294 39.130 18.85 0.00 0.00 3.27
2555 4239 5.631096 GCTTCCAAAACTCTGCAGAATAAAC 59.369 40.000 18.85 0.00 0.00 2.01
2556 4240 5.301551 TGCTTCCAAAACTCTGCAGAATAAA 59.698 36.000 18.85 4.78 0.00 1.40
2557 4241 4.826733 TGCTTCCAAAACTCTGCAGAATAA 59.173 37.500 18.85 0.00 0.00 1.40
2558 4242 4.397420 TGCTTCCAAAACTCTGCAGAATA 58.603 39.130 18.85 0.00 0.00 1.75
2559 4243 3.225104 TGCTTCCAAAACTCTGCAGAAT 58.775 40.909 18.85 4.38 0.00 2.40
2560 4244 2.653726 TGCTTCCAAAACTCTGCAGAA 58.346 42.857 18.85 0.00 0.00 3.02
2561 4245 2.346766 TGCTTCCAAAACTCTGCAGA 57.653 45.000 17.19 17.19 0.00 4.26
2735 4419 2.366533 AGCTCATCTGCAGTGGAAATG 58.633 47.619 14.67 9.74 34.99 2.32
2736 4420 2.803030 AGCTCATCTGCAGTGGAAAT 57.197 45.000 14.67 0.00 34.99 2.17
2748 4435 8.879342 TTCTAGCAAGTATTCTTAAGCTCATC 57.121 34.615 0.00 0.00 35.51 2.92
2754 4441 9.102757 TGCTTGATTCTAGCAAGTATTCTTAAG 57.897 33.333 18.41 0.00 45.05 1.85
2767 4454 7.426410 TGTACTGTACTATGCTTGATTCTAGC 58.574 38.462 17.98 12.40 39.10 3.42
2768 4455 9.973450 AATGTACTGTACTATGCTTGATTCTAG 57.027 33.333 17.98 0.00 0.00 2.43
2770 4457 9.102757 CAAATGTACTGTACTATGCTTGATTCT 57.897 33.333 17.98 0.00 0.00 2.40
2771 4458 9.098355 TCAAATGTACTGTACTATGCTTGATTC 57.902 33.333 17.98 0.00 0.00 2.52
2773 4460 9.618890 AATCAAATGTACTGTACTATGCTTGAT 57.381 29.630 17.98 17.71 0.00 2.57
2775 4462 8.882736 TCAATCAAATGTACTGTACTATGCTTG 58.117 33.333 17.98 17.99 0.00 4.01
2777 4464 8.260818 ACTCAATCAAATGTACTGTACTATGCT 58.739 33.333 17.98 4.63 0.00 3.79
2780 4467 9.944376 AACACTCAATCAAATGTACTGTACTAT 57.056 29.630 17.98 7.98 0.00 2.12
2782 4469 9.424319 CTAACACTCAATCAAATGTACTGTACT 57.576 33.333 17.98 2.36 0.00 2.73
2783 4470 9.204570 ACTAACACTCAATCAAATGTACTGTAC 57.795 33.333 10.98 10.98 0.00 2.90
2786 4473 8.539770 AGACTAACACTCAATCAAATGTACTG 57.460 34.615 0.00 0.00 0.00 2.74
2790 4477 7.201556 CGCATAGACTAACACTCAATCAAATGT 60.202 37.037 0.00 0.00 0.00 2.71
2791 4478 7.121911 CGCATAGACTAACACTCAATCAAATG 58.878 38.462 0.00 0.00 0.00 2.32
2792 4479 6.818644 ACGCATAGACTAACACTCAATCAAAT 59.181 34.615 0.00 0.00 0.00 2.32
2799 4486 3.086282 TCCACGCATAGACTAACACTCA 58.914 45.455 0.00 0.00 0.00 3.41
2800 4487 3.777465 TCCACGCATAGACTAACACTC 57.223 47.619 0.00 0.00 0.00 3.51
2804 4491 5.560148 CAACAAATCCACGCATAGACTAAC 58.440 41.667 0.00 0.00 0.00 2.34
2807 4494 2.420022 GCAACAAATCCACGCATAGACT 59.580 45.455 0.00 0.00 0.00 3.24
2811 4498 2.158559 ACTGCAACAAATCCACGCATA 58.841 42.857 0.00 0.00 31.10 3.14
2816 4503 3.068024 TCCAAGAACTGCAACAAATCCAC 59.932 43.478 0.00 0.00 0.00 4.02
3154 4845 1.456705 GGGGAGCTCGGAGATGACT 60.457 63.158 9.69 0.00 33.89 3.41
3247 4938 4.578898 TTGACGCCGCACTCACGT 62.579 61.111 0.00 0.00 43.83 4.49
4054 5837 0.806102 CGATGGTGACGCGGAAGAAT 60.806 55.000 12.47 0.00 0.00 2.40
4259 6042 3.714391 TCTCATCTCATCGTCTGCAATG 58.286 45.455 0.00 0.00 0.00 2.82
4326 6109 2.741486 TTCGTGCCCAGCAACCTACC 62.741 60.000 0.00 0.00 41.47 3.18
4623 6415 3.274281 AAGTCCACCCCAAAATCCATT 57.726 42.857 0.00 0.00 0.00 3.16
4624 6416 3.173151 GAAAGTCCACCCCAAAATCCAT 58.827 45.455 0.00 0.00 0.00 3.41
4643 6435 4.993029 AAAAAGGTCACAAATCCACGAA 57.007 36.364 0.00 0.00 0.00 3.85
4670 6475 5.277876 GCCGATCGACTTCTACTATTCAGAA 60.278 44.000 18.66 0.00 0.00 3.02
4686 6491 1.724623 CTTTTCACTTTCGCCGATCGA 59.275 47.619 18.66 0.00 46.88 3.59
4687 6492 1.459592 ACTTTTCACTTTCGCCGATCG 59.540 47.619 8.51 8.51 40.15 3.69
4694 6499 8.614994 AACAAATCTTACACTTTTCACTTTCG 57.385 30.769 0.00 0.00 0.00 3.46
4702 6507 7.012989 ACGCTTCCTAACAAATCTTACACTTTT 59.987 33.333 0.00 0.00 0.00 2.27
4782 6587 6.681729 ATCCTAGCGATATTCCAAACCTTA 57.318 37.500 0.00 0.00 0.00 2.69
4840 6647 6.548321 TCTTCTTCTGTTCTAGTCTTCCTCT 58.452 40.000 0.00 0.00 0.00 3.69
5085 6893 7.272037 ACGAAACACATAGAGGTTGATTTTT 57.728 32.000 0.00 0.00 0.00 1.94
5107 6915 0.438445 CTGTGTTCCATGCACGTACG 59.562 55.000 15.01 15.01 39.53 3.67
5175 6983 3.055094 GGGAATCAAGACTCCACAAGCTA 60.055 47.826 0.00 0.00 32.95 3.32
5291 7099 2.435372 TGGAGTGCAAGGAAACAAGT 57.565 45.000 0.00 0.00 0.00 3.16
5331 7139 6.976636 CAACAGGTGGTTTTGTTGTATTTT 57.023 33.333 8.71 0.00 45.58 1.82
5358 7166 2.877154 AGGGTGTCCTGGTGATAGAT 57.123 50.000 0.00 0.00 42.98 1.98
5469 7277 7.394016 TCATTGGACTGCACTAAAGAGAATTA 58.606 34.615 0.00 0.00 0.00 1.40
5481 7289 3.403038 AGTACAGTTCATTGGACTGCAC 58.597 45.455 22.54 19.92 46.53 4.57
5584 7392 4.082949 GCAACAAACTATAGGGGTGTTGTC 60.083 45.833 27.94 21.51 46.81 3.18
5592 7400 4.271049 CGAGTGATGCAACAAACTATAGGG 59.729 45.833 4.43 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.