AutoCloner

Multiple sequence alignment - TraesCS3B01G167700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G167700	chr3B	100.000	2410	0	0	1	2410	168141422	168139013	0.000000e+00	4451
1	TraesCS3B01G167700	chr3B	92.802	514	34	3	427	938	740109527	740109015	0.000000e+00	741
2	TraesCS3B01G167700	chr3B	97.045	440	9	3	4	442	740134384	740133948	0.000000e+00	737
3	TraesCS3B01G167700	chr3B	77.124	306	35	19	1478	1782	168146594	168146323	6.940000e-31	145
4	TraesCS3B01G167700	chr5A	99.152	943	8	0	1	943	580486727	580487669	0.000000e+00	1698
5	TraesCS3B01G167700	chr5B	99.254	938	7	0	1	938	6980660	6979723	0.000000e+00	1694
6	TraesCS3B01G167700	chr4B	98.825	936	11	0	1	936	156062257	156061322	0.000000e+00	1668
7	TraesCS3B01G167700	chr7A	94.866	935	38	4	4	938	635303471	635302547	0.000000e+00	1452
8	TraesCS3B01G167700	chr1A	94.872	936	37	5	4	938	570617924	570616999	0.000000e+00	1452
9	TraesCS3B01G167700	chr1B	96.756	863	27	1	1	863	58018837	58019698	0.000000e+00	1437
10	TraesCS3B01G167700	chr1B	89.041	657	47	18	978	1629	610560742	610561378	0.000000e+00	791
11	TraesCS3B01G167700	chr1B	87.318	686	51	25	966	1629	607429565	607428894	0.000000e+00	752
12	TraesCS3B01G167700	chr1B	87.406	667	51	27	975	1629	608053861	608053216	0.000000e+00	736
13	TraesCS3B01G167700	chr1B	85.640	578	55	24	1066	1629	608355308	608354745	1.240000e-162	582
14	TraesCS3B01G167700	chr3D	90.314	1115	59	21	936	2045	114883168	114882098	0.000000e+00	1415
15	TraesCS3B01G167700	chr3D	97.275	367	9	1	2044	2410	114882139	114881774	2.630000e-174	621
16	TraesCS3B01G167700	chr3D	89.209	139	11	3	1647	1782	114886349	114886212	1.150000e-38	171
17	TraesCS3B01G167700	chr3A	86.990	1153	86	32	936	2045	111106261	111105130	0.000000e+00	1240
18	TraesCS3B01G167700	chr3A	80.311	386	38	12	2044	2410	111105170	111104804	8.550000e-65	257
19	TraesCS3B01G167700	chr6A	89.417	926	50	18	936	1817	67142157	67141236	0.000000e+00	1123
20	TraesCS3B01G167700	chr6A	88.714	381	27	7	2044	2410	67141174	67140796	3.650000e-123	451
21	TraesCS3B01G167700	chr1D	88.462	702	55	19	936	1629	446437040	446437723	0.000000e+00	824
22	TraesCS3B01G167700	chr1D	88.106	681	44	21	966	1629	355825263	355825923	0.000000e+00	774
23	TraesCS3B01G167700	chr1D	96.861	446	12	2	972	1416	446558456	446558900	0.000000e+00	745
24	TraesCS3B01G167700	chr1D	90.909	110	6	3	1523	1629	445385151	445385043	6.940000e-31	145
25	TraesCS3B01G167700	chr2A	93.122	567	29	4	375	938	654669719	654670278	0.000000e+00	822
26	TraesCS3B01G167700	chr6D	94.007	534	25	3	936	1462	47812313	47812846	0.000000e+00	802
27	TraesCS3B01G167700	chr6D	88.378	370	26	9	2044	2403	47812986	47813348	1.710000e-116	429
28	TraesCS3B01G167700	chrUn	96.614	443	11	3	1	442	280091664	280092103	0.000000e+00	732
29	TraesCS3B01G167700	chrUn	95.964	446	18	0	493	938	389205956	389206401	0.000000e+00	725
30	TraesCS3B01G167700	chrUn	93.648	488	21	4	4	491	473163559	473163082	0.000000e+00	721
31	TraesCS3B01G167700	chr2B	87.183	671	51	23	972	1636	161026441	161027082	0.000000e+00	730

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G167700	chr3B	168139013	168141422	2409	True	4451.000000	4451	100.0000	1	2410	1	chr3B.!!$R1	2409
1	TraesCS3B01G167700	chr3B	740109015	740109527	512	True	741.000000	741	92.8020	427	938	1	chr3B.!!$R3	511
2	TraesCS3B01G167700	chr5A	580486727	580487669	942	False	1698.000000	1698	99.1520	1	943	1	chr5A.!!$F1	942
3	TraesCS3B01G167700	chr5B	6979723	6980660	937	True	1694.000000	1694	99.2540	1	938	1	chr5B.!!$R1	937
4	TraesCS3B01G167700	chr4B	156061322	156062257	935	True	1668.000000	1668	98.8250	1	936	1	chr4B.!!$R1	935
5	TraesCS3B01G167700	chr7A	635302547	635303471	924	True	1452.000000	1452	94.8660	4	938	1	chr7A.!!$R1	934
6	TraesCS3B01G167700	chr1A	570616999	570617924	925	True	1452.000000	1452	94.8720	4	938	1	chr1A.!!$R1	934
7	TraesCS3B01G167700	chr1B	58018837	58019698	861	False	1437.000000	1437	96.7560	1	863	1	chr1B.!!$F1	862
8	TraesCS3B01G167700	chr1B	610560742	610561378	636	False	791.000000	791	89.0410	978	1629	1	chr1B.!!$F2	651
9	TraesCS3B01G167700	chr1B	607428894	607429565	671	True	752.000000	752	87.3180	966	1629	1	chr1B.!!$R1	663
10	TraesCS3B01G167700	chr1B	608053216	608053861	645	True	736.000000	736	87.4060	975	1629	1	chr1B.!!$R2	654
11	TraesCS3B01G167700	chr1B	608354745	608355308	563	True	582.000000	582	85.6400	1066	1629	1	chr1B.!!$R3	563
12	TraesCS3B01G167700	chr3D	114881774	114886349	4575	True	735.666667	1415	92.2660	936	2410	3	chr3D.!!$R1	1474
13	TraesCS3B01G167700	chr3A	111104804	111106261	1457	True	748.500000	1240	83.6505	936	2410	2	chr3A.!!$R1	1474
14	TraesCS3B01G167700	chr6A	67140796	67142157	1361	True	787.000000	1123	89.0655	936	2410	2	chr6A.!!$R1	1474
15	TraesCS3B01G167700	chr1D	446437040	446437723	683	False	824.000000	824	88.4620	936	1629	1	chr1D.!!$F2	693
16	TraesCS3B01G167700	chr1D	355825263	355825923	660	False	774.000000	774	88.1060	966	1629	1	chr1D.!!$F1	663
17	TraesCS3B01G167700	chr2A	654669719	654670278	559	False	822.000000	822	93.1220	375	938	1	chr2A.!!$F1	563
18	TraesCS3B01G167700	chr6D	47812313	47813348	1035	False	615.500000	802	91.1925	936	2403	2	chr6D.!!$F1	1467
19	TraesCS3B01G167700	chr2B	161026441	161027082	641	False	730.000000	730	87.1830	972	1636	1	chr2B.!!$F1	664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
943	3190	0.768221	ACCAAAGGAGGCCTCACTCA	60.768	55.0	33.29	0.0	39.27	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1771	4098	1.246056	GGTTCAGATGCAGCAAGCCA	61.246	55.0	4.07	0.0	44.83	4.75	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
739	741	3.767630	AAGGAACAGTTGCCGCCGT	62.768	57.895	0.31	0.00	0.00	5.68
871	874	1.216678	TGAACCAAAGGCCTCCAAAGA	59.783	47.619	5.23	0.00	0.00	2.52
943	3190	0.768221	ACCAAAGGAGGCCTCACTCA	60.768	55.000	33.29	0.00	39.27	3.41
1453	3718	2.289565	TGCGTCGTGTCAGATAGATCT	58.710	47.619	0.00	0.00	37.72	2.75
1502	3803	5.337554	CGTCGTGTTAGATCCATGTTAGAA	58.662	41.667	0.00	0.00	0.00	2.10
1516	3817	2.561419	TGTTAGAACCCTGTTCCTCTCG	59.439	50.000	3.47	0.00	0.00	4.04
1546	3847	4.516698	GTGGATGTGTTATGCCTAATCTGG	59.483	45.833	0.00	0.00	0.00	3.86
1592	3903	7.041916	TCAGCAATGGAAATGAAAATGTTTGTC	60.042	33.333	0.00	0.00	0.00	3.18
1642	3953	4.040829	TGCCTGATTCTCCCTGTATGTATG	59.959	45.833	0.00	0.00	0.00	2.39
1643	3954	4.040952	GCCTGATTCTCCCTGTATGTATGT	59.959	45.833	0.00	0.00	0.00	2.29
1829	4164	2.961526	TATGCTCGTCTTCAGTTCCC	57.038	50.000	0.00	0.00	0.00	3.97
1859	4197	2.346803	CAGTTGCATAACAGTAGCGGT	58.653	47.619	0.00	0.00	39.30	5.68
1860	4198	3.517602	CAGTTGCATAACAGTAGCGGTA	58.482	45.455	0.00	0.00	39.30	4.02
1887	4225	2.407090	TGATGTTCAGTCTTCAGTGCG	58.593	47.619	0.00	0.00	0.00	5.34
1895	4233	0.366871	GTCTTCAGTGCGCATACGTG	59.633	55.000	15.91	9.58	42.83	4.49
1910	4248	4.320202	GCATACGTGTTCTGTTGAAACCAT	60.320	41.667	0.00	0.00	33.52	3.55
1923	4272	2.100197	GAAACCATCCCTACTTTGCCC	58.900	52.381	0.00	0.00	0.00	5.36
1931	4280	6.183361	ACCATCCCTACTTTGCCCAATTATAT	60.183	38.462	0.00	0.00	0.00	0.86
1932	4281	7.019153	ACCATCCCTACTTTGCCCAATTATATA	59.981	37.037	0.00	0.00	0.00	0.86
1933	4282	8.061304	CCATCCCTACTTTGCCCAATTATATAT	58.939	37.037	0.00	0.00	0.00	0.86
1957	4312	1.869767	GCAATCCCGCAAGTCTATGAG	59.130	52.381	0.00	0.00	0.00	2.90
1963	4318	1.473965	CCGCAAGTCTATGAGCCATGT	60.474	52.381	0.00	0.00	0.00	3.21
1983	4338	6.149308	CCATGTTCTGAACTGCAAACATACTA	59.851	38.462	20.18	0.00	36.74	1.82
1984	4339	6.539649	TGTTCTGAACTGCAAACATACTAC	57.460	37.500	20.18	0.00	0.00	2.73
1987	4342	7.384115	TGTTCTGAACTGCAAACATACTACTAC	59.616	37.037	20.18	0.00	0.00	2.73
1988	4343	7.228314	TCTGAACTGCAAACATACTACTACT	57.772	36.000	0.00	0.00	0.00	2.57
1989	4344	7.090808	TCTGAACTGCAAACATACTACTACTG	58.909	38.462	0.00	0.00	0.00	2.74
1990	4345	6.988522	TGAACTGCAAACATACTACTACTGA	58.011	36.000	0.00	0.00	0.00	3.41
1993	4348	9.239002	GAACTGCAAACATACTACTACTGATAG	57.761	37.037	0.00	0.00	34.25	2.08
2008	4363	8.647256	ACTACTGATAGTACAAGTTACTTGGT	57.353	34.615	26.09	14.90	40.02	3.67
2009	4364	8.521176	ACTACTGATAGTACAAGTTACTTGGTG	58.479	37.037	26.09	5.57	40.02	4.17
2010	4365	6.164176	ACTGATAGTACAAGTTACTTGGTGC	58.836	40.000	26.09	16.02	44.81	5.01
2011	4366	5.484715	TGATAGTACAAGTTACTTGGTGCC	58.515	41.667	26.09	12.20	44.81	5.01
2012	4367	5.247564	TGATAGTACAAGTTACTTGGTGCCT	59.752	40.000	26.09	17.51	44.81	4.75
2013	4368	4.004196	AGTACAAGTTACTTGGTGCCTC	57.996	45.455	26.09	11.12	44.81	4.70
2014	4369	1.878953	ACAAGTTACTTGGTGCCTCG	58.121	50.000	26.09	2.04	44.81	4.63
2015	4370	1.140252	ACAAGTTACTTGGTGCCTCGT	59.860	47.619	26.09	2.72	44.81	4.18
2016	4371	1.798813	CAAGTTACTTGGTGCCTCGTC	59.201	52.381	16.62	0.00	37.77	4.20
2017	4372	1.339097	AGTTACTTGGTGCCTCGTCT	58.661	50.000	0.00	0.00	0.00	4.18
2018	4373	1.692519	AGTTACTTGGTGCCTCGTCTT	59.307	47.619	0.00	0.00	0.00	3.01
2019	4374	2.895404	AGTTACTTGGTGCCTCGTCTTA	59.105	45.455	0.00	0.00	0.00	2.10
2020	4375	3.322828	AGTTACTTGGTGCCTCGTCTTAA	59.677	43.478	0.00	0.00	0.00	1.85
2021	4376	2.457366	ACTTGGTGCCTCGTCTTAAG	57.543	50.000	0.00	0.00	0.00	1.85
2022	4377	1.968493	ACTTGGTGCCTCGTCTTAAGA	59.032	47.619	0.00	0.00	0.00	2.10
2023	4378	2.567615	ACTTGGTGCCTCGTCTTAAGAT	59.432	45.455	8.75	0.00	0.00	2.40
2024	4379	3.008049	ACTTGGTGCCTCGTCTTAAGATT	59.992	43.478	8.75	0.00	0.00	2.40
2025	4380	3.695830	TGGTGCCTCGTCTTAAGATTT	57.304	42.857	8.75	0.00	0.00	2.17
2026	4381	4.015872	TGGTGCCTCGTCTTAAGATTTT	57.984	40.909	8.75	0.00	0.00	1.82
2027	4382	5.155278	TGGTGCCTCGTCTTAAGATTTTA	57.845	39.130	8.75	0.00	0.00	1.52
2028	4383	4.933400	TGGTGCCTCGTCTTAAGATTTTAC	59.067	41.667	8.75	4.12	0.00	2.01
2029	4384	4.933400	GGTGCCTCGTCTTAAGATTTTACA	59.067	41.667	8.75	2.65	0.00	2.41
2030	4385	5.063564	GGTGCCTCGTCTTAAGATTTTACAG	59.936	44.000	8.75	0.00	0.00	2.74
2031	4386	5.063564	GTGCCTCGTCTTAAGATTTTACAGG	59.936	44.000	8.75	8.74	0.00	4.00
2032	4387	5.176592	GCCTCGTCTTAAGATTTTACAGGT	58.823	41.667	8.75	0.00	0.00	4.00
2033	4388	5.642491	GCCTCGTCTTAAGATTTTACAGGTT	59.358	40.000	8.75	0.00	0.00	3.50
2034	4389	6.183360	GCCTCGTCTTAAGATTTTACAGGTTC	60.183	42.308	8.75	0.00	0.00	3.62
2035	4390	6.872020	CCTCGTCTTAAGATTTTACAGGTTCA	59.128	38.462	8.75	0.00	0.00	3.18
2036	4391	7.063544	CCTCGTCTTAAGATTTTACAGGTTCAG	59.936	40.741	8.75	0.00	0.00	3.02
2037	4392	7.663827	TCGTCTTAAGATTTTACAGGTTCAGA	58.336	34.615	8.75	0.00	0.00	3.27
2038	4393	8.145767	TCGTCTTAAGATTTTACAGGTTCAGAA	58.854	33.333	8.75	0.00	0.00	3.02
2039	4394	8.770828	CGTCTTAAGATTTTACAGGTTCAGAAA	58.229	33.333	8.75	0.00	0.00	2.52
2042	4397	9.899226	CTTAAGATTTTACAGGTTCAGAAAAGG	57.101	33.333	0.00	0.00	0.00	3.11
2076	4431	6.861065	TGTCTTCAGATTTTACAGGTTCAC	57.139	37.500	0.00	0.00	0.00	3.18
2080	4435	7.644157	GTCTTCAGATTTTACAGGTTCACAAAC	59.356	37.037	0.00	0.00	34.46	2.93
2096	4451	4.711949	ACGGCTGCAGGCTTCCAG	62.712	66.667	34.13	21.98	41.46	3.86
2118	4473	1.742831	TCGTGCCTGGAACATTATTGC	59.257	47.619	5.49	0.00	38.20	3.56
2193	4571	0.550914	TTCCTGGTTCTGCCACTGTT	59.449	50.000	0.00	0.00	43.61	3.16
2342	4728	6.256757	AGCTTCGATCTTGTAGCTTAAATGAC	59.743	38.462	1.19	0.00	39.23	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
81	82	2.762887	TCAGCTCTCACTAGTCCCATTG	59.237	50.000	0.00	0.00	0.00	2.82
943	3190	1.831290	GCTTGGGGGTTGGGAAGATTT	60.831	52.381	0.00	0.00	0.00	2.17
1146	3402	0.535335	TGGTACTTGCGGATCTCACC	59.465	55.000	0.00	0.00	0.00	4.02
1453	3718	4.415881	TTCTGAAACACAGCCTAACAGA	57.584	40.909	0.00	0.00	45.38	3.41
1502	3803	1.152312	ACCACGAGAGGAACAGGGT	60.152	57.895	0.00	0.00	0.00	4.34
1516	3817	2.091541	CATAACACATCCACCCACCAC	58.908	52.381	0.00	0.00	0.00	4.16
1592	3903	1.935873	CGCACATGTATGAGAACAGGG	59.064	52.381	0.00	0.00	35.53	4.45
1642	3953	3.190118	CACATTCAAGAGGAAAGGCTCAC	59.810	47.826	0.00	0.00	39.39	3.51
1643	3954	3.415212	CACATTCAAGAGGAAAGGCTCA	58.585	45.455	0.00	0.00	39.39	4.26
1676	3987	7.199541	AGAAATTTGATGATCTAATCCAGCG	57.800	36.000	2.76	0.00	0.00	5.18
1678	3989	7.866393	GGCAAGAAATTTGATGATCTAATCCAG	59.134	37.037	2.76	0.00	0.00	3.86
1735	4060	8.296799	TGCAAAAATTGACAGTTGAATGATAC	57.703	30.769	0.00	0.00	0.00	2.24
1771	4098	1.246056	GGTTCAGATGCAGCAAGCCA	61.246	55.000	4.07	0.00	44.83	4.75
1829	4164	4.820897	TGTTATGCAACTGGTCAGTAGAG	58.179	43.478	3.87	0.00	41.58	2.43
1859	4197	9.154847	CACTGAAGACTGAACATCAAACATATA	57.845	33.333	0.00	0.00	0.00	0.86
1860	4198	7.361542	GCACTGAAGACTGAACATCAAACATAT	60.362	37.037	0.00	0.00	0.00	1.78
1887	4225	3.002862	TGGTTTCAACAGAACACGTATGC	59.997	43.478	0.00	0.00	0.00	3.14
1895	4233	4.652822	AGTAGGGATGGTTTCAACAGAAC	58.347	43.478	0.00	0.00	0.00	3.01
1910	4248	9.346515	AGTATATATAATTGGGCAAAGTAGGGA	57.653	33.333	0.00	0.00	0.00	4.20
1923	4272	7.552458	TGCGGGATTGCAGTATATATAATTG	57.448	36.000	0.00	0.00	40.62	2.32
1957	4312	2.223782	TGTTTGCAGTTCAGAACATGGC	60.224	45.455	15.85	15.00	0.00	4.40
1963	4318	7.598869	CAGTAGTAGTATGTTTGCAGTTCAGAA	59.401	37.037	0.00	0.00	0.00	3.02
1983	4338	8.521176	CACCAAGTAACTTGTACTATCAGTAGT	58.479	37.037	0.00	0.00	39.58	2.73
1984	4339	7.488471	GCACCAAGTAACTTGTACTATCAGTAG	59.512	40.741	0.00	0.00	39.58	2.57
1987	4342	5.581085	GGCACCAAGTAACTTGTACTATCAG	59.419	44.000	0.00	0.00	39.58	2.90
1988	4343	5.247564	AGGCACCAAGTAACTTGTACTATCA	59.752	40.000	0.00	0.00	39.58	2.15
1989	4344	5.731591	AGGCACCAAGTAACTTGTACTATC	58.268	41.667	0.00	0.00	39.58	2.08
1990	4345	5.623824	CGAGGCACCAAGTAACTTGTACTAT	60.624	44.000	0.00	0.00	39.58	2.12
1993	4348	2.735134	CGAGGCACCAAGTAACTTGTAC	59.265	50.000	0.00	0.00	39.58	2.90
2003	4358	2.743636	TCTTAAGACGAGGCACCAAG	57.256	50.000	0.00	0.00	0.00	3.61
2004	4359	3.695830	AATCTTAAGACGAGGCACCAA	57.304	42.857	7.48	0.00	0.00	3.67
2005	4360	3.695830	AAATCTTAAGACGAGGCACCA	57.304	42.857	7.48	0.00	0.00	4.17
2006	4361	4.933400	TGTAAAATCTTAAGACGAGGCACC	59.067	41.667	7.48	0.00	0.00	5.01
2007	4362	5.063564	CCTGTAAAATCTTAAGACGAGGCAC	59.936	44.000	7.48	2.50	0.00	5.01
2008	4363	5.175859	CCTGTAAAATCTTAAGACGAGGCA	58.824	41.667	7.48	4.26	0.00	4.75
2009	4364	5.176592	ACCTGTAAAATCTTAAGACGAGGC	58.823	41.667	7.48	0.00	0.00	4.70
2010	4365	6.872020	TGAACCTGTAAAATCTTAAGACGAGG	59.128	38.462	7.48	9.05	0.00	4.63
2011	4366	7.813148	TCTGAACCTGTAAAATCTTAAGACGAG	59.187	37.037	7.48	0.00	0.00	4.18
2012	4367	7.663827	TCTGAACCTGTAAAATCTTAAGACGA	58.336	34.615	7.48	0.00	0.00	4.20
2013	4368	7.884816	TCTGAACCTGTAAAATCTTAAGACG	57.115	36.000	7.48	0.00	0.00	4.18
2016	4371	9.899226	CCTTTTCTGAACCTGTAAAATCTTAAG	57.101	33.333	0.00	0.00	0.00	1.85
2017	4372	8.357402	GCCTTTTCTGAACCTGTAAAATCTTAA	58.643	33.333	0.00	0.00	0.00	1.85
2018	4373	7.724061	AGCCTTTTCTGAACCTGTAAAATCTTA	59.276	33.333	0.00	0.00	0.00	2.10
2019	4374	6.551227	AGCCTTTTCTGAACCTGTAAAATCTT	59.449	34.615	0.00	0.00	0.00	2.40
2020	4375	6.071320	AGCCTTTTCTGAACCTGTAAAATCT	58.929	36.000	0.00	0.00	0.00	2.40
2021	4376	6.332735	AGCCTTTTCTGAACCTGTAAAATC	57.667	37.500	0.00	0.00	0.00	2.17
2022	4377	6.462909	CCAAGCCTTTTCTGAACCTGTAAAAT	60.463	38.462	0.00	0.00	0.00	1.82
2023	4378	5.163457	CCAAGCCTTTTCTGAACCTGTAAAA	60.163	40.000	0.00	0.00	0.00	1.52
2024	4379	4.340950	CCAAGCCTTTTCTGAACCTGTAAA	59.659	41.667	0.00	0.00	0.00	2.01
2025	4380	3.888930	CCAAGCCTTTTCTGAACCTGTAA	59.111	43.478	0.00	0.00	0.00	2.41
2026	4381	3.117663	ACCAAGCCTTTTCTGAACCTGTA	60.118	43.478	0.00	0.00	0.00	2.74
2027	4382	2.310538	CCAAGCCTTTTCTGAACCTGT	58.689	47.619	0.00	0.00	0.00	4.00
2028	4383	2.035066	CACCAAGCCTTTTCTGAACCTG	59.965	50.000	0.00	0.00	0.00	4.00
2029	4384	2.310538	CACCAAGCCTTTTCTGAACCT	58.689	47.619	0.00	0.00	0.00	3.50
2030	4385	2.031870	ACACCAAGCCTTTTCTGAACC	58.968	47.619	0.00	0.00	0.00	3.62
2031	4386	2.952310	AGACACCAAGCCTTTTCTGAAC	59.048	45.455	0.00	0.00	0.00	3.18
2032	4387	3.297134	AGACACCAAGCCTTTTCTGAA	57.703	42.857	0.00	0.00	0.00	3.02
2033	4388	2.951642	CAAGACACCAAGCCTTTTCTGA	59.048	45.455	0.00	0.00	0.00	3.27
2034	4389	2.689983	ACAAGACACCAAGCCTTTTCTG	59.310	45.455	0.00	0.00	0.00	3.02
2035	4390	2.952310	GACAAGACACCAAGCCTTTTCT	59.048	45.455	0.00	0.00	0.00	2.52
2036	4391	2.952310	AGACAAGACACCAAGCCTTTTC	59.048	45.455	0.00	0.00	0.00	2.29
2037	4392	3.018423	AGACAAGACACCAAGCCTTTT	57.982	42.857	0.00	0.00	0.00	2.27
2038	4393	2.736670	AGACAAGACACCAAGCCTTT	57.263	45.000	0.00	0.00	0.00	3.11
2039	4394	2.092429	TGAAGACAAGACACCAAGCCTT	60.092	45.455	0.00	0.00	0.00	4.35
2040	4395	1.490490	TGAAGACAAGACACCAAGCCT	59.510	47.619	0.00	0.00	0.00	4.58
2041	4396	1.876156	CTGAAGACAAGACACCAAGCC	59.124	52.381	0.00	0.00	0.00	4.35
2042	4397	2.838736	TCTGAAGACAAGACACCAAGC	58.161	47.619	0.00	0.00	0.00	4.01
2076	4431	2.256461	GAAGCCTGCAGCCGTTTG	59.744	61.111	8.66	0.00	45.47	2.93
2080	4435	3.694058	ATCTGGAAGCCTGCAGCCG	62.694	63.158	8.66	0.00	45.47	5.52
2096	4451	3.548818	GCAATAATGTTCCAGGCACGATC	60.549	47.826	0.00	0.00	0.00	3.69
2118	4473	2.173519	AGGAATTGTGGGTGATGCAAG	58.826	47.619	0.00	0.00	0.00	4.01
2193	4571	1.338105	CCGATCCACTCTGCAGTTTCA	60.338	52.381	14.67	0.00	0.00	2.69
2342	4728	5.416083	TGATTTCATACTTGGACACGGTAG	58.584	41.667	0.00	0.00	0.00	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.