Multiple sequence alignment - TraesCS3B01G167600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G167600 chr3B 100.000 2312 0 0 1 2312 168139352 168137041 0.000000e+00 4270.0
1 TraesCS3B01G167600 chr3B 93.182 176 11 1 1876 2051 571752693 571752519 8.200000e-65 257.0
2 TraesCS3B01G167600 chr3B 88.889 99 3 2 354 444 168145965 168145867 5.220000e-22 115.0
3 TraesCS3B01G167600 chr3A 85.205 1656 123 55 74 1656 111105052 111103446 0.000000e+00 1589.0
4 TraesCS3B01G167600 chr3A 87.540 313 20 11 162 457 111106859 111106549 6.120000e-91 344.0
5 TraesCS3B01G167600 chr3A 88.333 180 16 2 1708 1882 111103328 111103149 6.470000e-51 211.0
6 TraesCS3B01G167600 chr3A 84.348 230 12 8 2086 2291 111103087 111102858 1.080000e-48 204.0
7 TraesCS3B01G167600 chr3D 90.596 1074 52 19 625 1656 114881117 114880051 0.000000e+00 1378.0
8 TraesCS3B01G167600 chr3D 94.787 633 18 2 1 633 114882112 114881495 0.000000e+00 972.0
9 TraesCS3B01G167600 chr3D 90.805 174 15 1 729 902 114883426 114883254 4.970000e-57 231.0
10 TraesCS3B01G167600 chr3D 90.667 75 2 1 354 423 114885854 114885780 6.800000e-16 95.3
11 TraesCS3B01G167600 chr1D 88.821 814 58 17 729 1515 445367104 445366297 0.000000e+00 968.0
12 TraesCS3B01G167600 chr1D 88.071 679 52 10 751 1407 446475907 446476578 0.000000e+00 778.0
13 TraesCS3B01G167600 chr1D 87.500 520 56 8 999 1515 388027101 388027614 1.980000e-165 592.0
14 TraesCS3B01G167600 chr1D 85.714 259 29 6 435 686 355827192 355827449 1.360000e-67 267.0
15 TraesCS3B01G167600 chr1D 83.019 212 25 8 1679 1883 445366064 445365857 5.070000e-42 182.0
16 TraesCS3B01G167600 chr1D 80.545 257 28 8 2077 2312 355829043 355829298 6.560000e-41 178.0
17 TraesCS3B01G167600 chr1B 86.942 896 68 20 749 1606 608043027 608042143 0.000000e+00 961.0
18 TraesCS3B01G167600 chr1B 88.847 789 58 14 749 1515 610892995 610893775 0.000000e+00 942.0
19 TraesCS3B01G167600 chr1B 86.776 794 50 25 749 1515 608335898 608335133 0.000000e+00 833.0
20 TraesCS3B01G167600 chr1B 88.686 548 39 13 788 1313 613231580 613232126 0.000000e+00 647.0
21 TraesCS3B01G167600 chr1B 86.220 254 27 5 435 683 610562660 610562910 3.790000e-68 268.0
22 TraesCS3B01G167600 chr1B 90.551 127 12 0 563 689 608051151 608051025 3.950000e-38 169.0
23 TraesCS3B01G167600 chr1B 89.764 127 13 0 563 689 608353372 608353246 1.840000e-36 163.0
24 TraesCS3B01G167600 chr1B 88.189 127 15 0 563 689 607427440 607427314 3.980000e-33 152.0
25 TraesCS3B01G167600 chr1B 80.000 225 19 17 2080 2279 608041969 608041746 2.390000e-30 143.0
26 TraesCS3B01G167600 chr1A 89.034 766 54 15 731 1472 541343537 541344296 0.000000e+00 922.0
27 TraesCS3B01G167600 chr1A 88.529 680 46 18 760 1413 456653438 456654111 0.000000e+00 795.0
28 TraesCS3B01G167600 chr1A 83.902 733 82 25 813 1516 487571107 487571832 0.000000e+00 667.0
29 TraesCS3B01G167600 chr1A 84.064 251 25 4 2077 2312 541459847 541459597 6.430000e-56 228.0
30 TraesCS3B01G167600 chr1A 80.156 257 29 8 2077 2312 456654564 456654819 3.050000e-39 172.0
31 TraesCS3B01G167600 chr1A 78.613 173 20 5 1438 1601 456654109 456654273 5.260000e-17 99.0
32 TraesCS3B01G167600 chr6D 85.185 567 40 21 1 554 47813013 47813548 2.020000e-150 542.0
33 TraesCS3B01G167600 chr6D 96.923 65 2 0 597 661 47814124 47814188 2.430000e-20 110.0
34 TraesCS3B01G167600 chr6D 95.745 47 2 0 566 612 47814059 47814105 2.460000e-10 76.8
35 TraesCS3B01G167600 chr6A 89.109 404 29 6 1 391 67141147 67140746 2.670000e-134 488.0
36 TraesCS3B01G167600 chr6A 88.172 93 11 0 597 689 67140679 67140587 6.750000e-21 111.0
37 TraesCS3B01G167600 chr6A 97.778 45 1 0 568 612 67140744 67140700 6.850000e-11 78.7
38 TraesCS3B01G167600 chr7B 91.237 194 13 4 1855 2046 186866711 186866520 6.340000e-66 261.0
39 TraesCS3B01G167600 chr7B 93.642 173 9 2 1879 2051 240869745 240869575 8.200000e-65 257.0
40 TraesCS3B01G167600 chr4A 94.152 171 8 2 1876 2046 102867671 102867503 2.280000e-65 259.0
41 TraesCS3B01G167600 chr4A 91.444 187 12 4 1878 2062 40248627 40248811 1.060000e-63 254.0
42 TraesCS3B01G167600 chr5D 93.182 176 9 3 1878 2053 231475435 231475607 2.950000e-64 255.0
43 TraesCS3B01G167600 chr4D 92.697 178 11 2 1878 2055 93338208 93338033 2.950000e-64 255.0
44 TraesCS3B01G167600 chr2B 90.909 187 16 1 1872 2058 154143941 154144126 1.370000e-62 250.0
45 TraesCS3B01G167600 chr5B 89.286 196 17 3 1851 2046 479312759 479312950 2.300000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G167600 chr3B 168137041 168139352 2311 True 4270.000000 4270 100.000000 1 2312 1 chr3B.!!$R1 2311
1 TraesCS3B01G167600 chr3A 111102858 111106859 4001 True 587.000000 1589 86.356500 74 2291 4 chr3A.!!$R1 2217
2 TraesCS3B01G167600 chr3D 114880051 114885854 5803 True 669.075000 1378 91.713750 1 1656 4 chr3D.!!$R1 1655
3 TraesCS3B01G167600 chr1D 446475907 446476578 671 False 778.000000 778 88.071000 751 1407 1 chr1D.!!$F2 656
4 TraesCS3B01G167600 chr1D 388027101 388027614 513 False 592.000000 592 87.500000 999 1515 1 chr1D.!!$F1 516
5 TraesCS3B01G167600 chr1D 445365857 445367104 1247 True 575.000000 968 85.920000 729 1883 2 chr1D.!!$R1 1154
6 TraesCS3B01G167600 chr1D 355827192 355829298 2106 False 222.500000 267 83.129500 435 2312 2 chr1D.!!$F3 1877
7 TraesCS3B01G167600 chr1B 610892995 610893775 780 False 942.000000 942 88.847000 749 1515 1 chr1B.!!$F2 766
8 TraesCS3B01G167600 chr1B 608335133 608335898 765 True 833.000000 833 86.776000 749 1515 1 chr1B.!!$R3 766
9 TraesCS3B01G167600 chr1B 613231580 613232126 546 False 647.000000 647 88.686000 788 1313 1 chr1B.!!$F3 525
10 TraesCS3B01G167600 chr1B 608041746 608043027 1281 True 552.000000 961 83.471000 749 2279 2 chr1B.!!$R5 1530
11 TraesCS3B01G167600 chr1A 541343537 541344296 759 False 922.000000 922 89.034000 731 1472 1 chr1A.!!$F2 741
12 TraesCS3B01G167600 chr1A 487571107 487571832 725 False 667.000000 667 83.902000 813 1516 1 chr1A.!!$F1 703
13 TraesCS3B01G167600 chr1A 456653438 456654819 1381 False 355.333333 795 82.432667 760 2312 3 chr1A.!!$F3 1552
14 TraesCS3B01G167600 chr6D 47813013 47814188 1175 False 242.933333 542 92.617667 1 661 3 chr6D.!!$F1 660
15 TraesCS3B01G167600 chr6A 67140587 67141147 560 True 225.900000 488 91.686333 1 689 3 chr6A.!!$R1 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
428 4498 0.03563 ATCAGTGCTGGAAGTGCTCC 60.036 55.0 0.0 0.0 45.64 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 6939 0.238289 CAACTCGTTGCCGCTTCAAT 59.762 50.0 0.0 0.0 33.45 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.115556 GGTTCACAAACGGCTGCA 58.884 55.556 0.50 0.00 36.16 4.41
18 19 1.008538 GGTTCACAAACGGCTGCAG 60.009 57.895 10.11 10.11 36.16 4.41
19 20 1.008538 GTTCACAAACGGCTGCAGG 60.009 57.895 17.12 1.57 0.00 4.85
20 21 2.844451 TTCACAAACGGCTGCAGGC 61.844 57.895 29.31 29.31 40.90 4.85
21 22 3.289834 CACAAACGGCTGCAGGCT 61.290 61.111 34.13 20.25 41.46 4.58
24 25 2.985847 AAACGGCTGCAGGCTTCC 60.986 61.111 34.13 17.30 41.46 3.46
25 26 3.790416 AAACGGCTGCAGGCTTCCA 62.790 57.895 34.13 0.00 41.46 3.53
28 29 2.274760 GGCTGCAGGCTTCCAGAT 59.725 61.111 31.40 0.00 41.46 2.90
29 30 1.823041 GGCTGCAGGCTTCCAGATC 60.823 63.158 31.40 2.45 41.46 2.75
32 33 1.078918 TGCAGGCTTCCAGATCGTG 60.079 57.895 0.00 0.00 0.00 4.35
33 34 2.467826 GCAGGCTTCCAGATCGTGC 61.468 63.158 0.00 0.00 35.06 5.34
34 35 1.817099 CAGGCTTCCAGATCGTGCC 60.817 63.158 8.64 8.64 43.52 5.01
35 36 2.586792 GGCTTCCAGATCGTGCCT 59.413 61.111 9.19 0.00 40.36 4.75
36 37 1.817099 GGCTTCCAGATCGTGCCTG 60.817 63.158 9.19 0.00 40.36 4.85
43 44 1.742761 CAGATCGTGCCTGGAACATT 58.257 50.000 5.49 0.00 38.20 2.71
44 45 2.905075 CAGATCGTGCCTGGAACATTA 58.095 47.619 5.49 0.00 38.20 1.90
45 46 3.470709 CAGATCGTGCCTGGAACATTAT 58.529 45.455 5.49 0.00 38.20 1.28
46 47 3.879295 CAGATCGTGCCTGGAACATTATT 59.121 43.478 5.49 0.00 38.20 1.40
47 48 3.879295 AGATCGTGCCTGGAACATTATTG 59.121 43.478 5.49 0.00 38.20 1.90
50 51 2.164219 CGTGCCTGGAACATTATTGCTT 59.836 45.455 5.49 0.00 38.20 3.91
51 52 3.514645 GTGCCTGGAACATTATTGCTTG 58.485 45.455 0.00 0.00 38.20 4.01
52 53 2.094078 TGCCTGGAACATTATTGCTTGC 60.094 45.455 0.00 0.00 38.20 4.01
53 54 2.094078 GCCTGGAACATTATTGCTTGCA 60.094 45.455 0.00 0.00 38.20 4.08
55 56 4.365723 CCTGGAACATTATTGCTTGCATC 58.634 43.478 0.00 0.00 38.20 3.91
56 57 4.142116 CCTGGAACATTATTGCTTGCATCA 60.142 41.667 0.00 0.00 38.20 3.07
58 59 4.114794 GGAACATTATTGCTTGCATCACC 58.885 43.478 0.00 0.00 0.00 4.02
61 62 3.119029 ACATTATTGCTTGCATCACCCAC 60.119 43.478 0.00 0.00 0.00 4.61
63 64 1.340088 ATTGCTTGCATCACCCACAA 58.660 45.000 0.00 0.00 0.00 3.33
64 65 1.340088 TTGCTTGCATCACCCACAAT 58.660 45.000 0.00 0.00 0.00 2.71
66 67 1.273048 TGCTTGCATCACCCACAATTC 59.727 47.619 0.00 0.00 0.00 2.17
67 68 1.404583 GCTTGCATCACCCACAATTCC 60.405 52.381 0.00 0.00 0.00 3.01
68 69 2.173519 CTTGCATCACCCACAATTCCT 58.826 47.619 0.00 0.00 0.00 3.36
72 73 3.509575 TGCATCACCCACAATTCCTAAAC 59.490 43.478 0.00 0.00 0.00 2.01
73 74 3.509575 GCATCACCCACAATTCCTAAACA 59.490 43.478 0.00 0.00 0.00 2.83
76 77 3.566322 TCACCCACAATTCCTAAACAACG 59.434 43.478 0.00 0.00 0.00 4.10
77 78 2.295070 ACCCACAATTCCTAAACAACGC 59.705 45.455 0.00 0.00 0.00 4.84
123 4171 0.550914 TTCCTGGTTCTGCCACTGTT 59.449 50.000 0.00 0.00 43.61 3.16
272 4328 6.256757 AGCTTCGATCTTGTAGCTTAAATGAC 59.743 38.462 1.19 0.00 39.23 3.06
428 4498 0.035630 ATCAGTGCTGGAAGTGCTCC 60.036 55.000 0.00 0.00 45.64 4.70
623 5231 3.058224 CCAAAACAGTTCGGATGAAGGAC 60.058 47.826 0.00 0.00 33.98 3.85
671 5665 4.212214 GCTACAGCAATGGAGCAAGTATAC 59.788 45.833 7.58 0.00 41.59 1.47
758 6100 1.374505 CGCCCACAGCCCAAAAATG 60.375 57.895 0.00 0.00 38.78 2.32
800 6142 4.738998 CCAGCCCGCCAATCCACA 62.739 66.667 0.00 0.00 0.00 4.17
807 6149 2.040544 CGCCAATCCACAGGTCCAC 61.041 63.158 0.00 0.00 0.00 4.02
814 6156 1.071471 CCACAGGTCCACGCTTTCT 59.929 57.895 0.00 0.00 0.00 2.52
852 6194 1.531748 GCATTTCTCCCCCGGATCA 59.468 57.895 0.73 0.00 0.00 2.92
870 6212 2.102357 CCATCTCGACCGTCCACG 59.898 66.667 0.00 0.00 39.44 4.94
876 6218 4.129737 CGACCGTCCACGCCATCT 62.130 66.667 0.00 0.00 38.18 2.90
984 6339 2.606587 CCACCACCCTTCCTCCCAG 61.607 68.421 0.00 0.00 0.00 4.45
988 6346 2.125225 ACCCTTCCTCCCAGTCCC 59.875 66.667 0.00 0.00 0.00 4.46
989 6347 2.124996 CCCTTCCTCCCAGTCCCA 59.875 66.667 0.00 0.00 0.00 4.37
990 6348 1.308216 CCCTTCCTCCCAGTCCCAT 60.308 63.158 0.00 0.00 0.00 4.00
994 6352 0.178846 TTCCTCCCAGTCCCATTCCA 60.179 55.000 0.00 0.00 0.00 3.53
1427 6830 0.992802 GCTCGAACTGAATCGTGGAC 59.007 55.000 7.30 0.00 43.19 4.02
1462 6866 4.024977 GCATGTGTTGTTGGAAATGAAACC 60.025 41.667 0.00 0.00 0.00 3.27
1472 6885 4.792068 TGGAAATGAAACCTGTCTCTGTT 58.208 39.130 0.00 0.00 0.00 3.16
1473 6886 4.580167 TGGAAATGAAACCTGTCTCTGTTG 59.420 41.667 0.00 0.00 0.00 3.33
1506 6919 2.688507 TCTGATTTTGTCTCGCTGGTC 58.311 47.619 0.00 0.00 0.00 4.02
1517 6939 0.607217 TCGCTGGTCGGTCTCTGTTA 60.607 55.000 0.00 0.00 39.05 2.41
1522 6953 3.616560 GCTGGTCGGTCTCTGTTATTGAA 60.617 47.826 0.00 0.00 0.00 2.69
1530 6961 2.742053 TCTCTGTTATTGAAGCGGCAAC 59.258 45.455 1.45 0.00 0.00 4.17
1596 7031 7.120285 TCGTAGTACTACTTGTTTGCAGTCTAT 59.880 37.037 26.36 0.00 34.04 1.98
1609 7054 6.528537 TTGCAGTCTATTTTGTAATGCCAT 57.471 33.333 0.00 0.00 0.00 4.40
1682 7176 7.669722 ACCATTGATGTTACTTCTGTGGTAATT 59.330 33.333 18.52 0.00 35.81 1.40
1692 7186 4.235079 TCTGTGGTAATTGAGATTGGGG 57.765 45.455 0.00 0.00 0.00 4.96
1734 7250 3.405831 TGAGTTCTGGATTGAGTTGCTG 58.594 45.455 0.00 0.00 0.00 4.41
1741 7257 1.815003 GGATTGAGTTGCTGTCCTTGG 59.185 52.381 0.00 0.00 0.00 3.61
1760 7276 1.226323 CGAGAGTTCTGGGCGTACG 60.226 63.158 11.84 11.84 0.00 3.67
1817 7337 4.834496 AGTGACCAATTCATGATGTGGTTT 59.166 37.500 24.35 14.43 44.42 3.27
1842 7368 9.529325 TTGTGCTAACTGCTAGTATAAGTTATG 57.471 33.333 5.61 0.00 43.37 1.90
1883 7410 9.118236 GTGCTTTATTTCTGTTGATTTGTACTC 57.882 33.333 0.00 0.00 0.00 2.59
1884 7411 8.296713 TGCTTTATTTCTGTTGATTTGTACTCC 58.703 33.333 0.00 0.00 0.00 3.85
1885 7412 7.755373 GCTTTATTTCTGTTGATTTGTACTCCC 59.245 37.037 0.00 0.00 0.00 4.30
1887 7414 8.561738 TTATTTCTGTTGATTTGTACTCCCTC 57.438 34.615 0.00 0.00 0.00 4.30
1888 7415 5.825593 TTCTGTTGATTTGTACTCCCTCT 57.174 39.130 0.00 0.00 0.00 3.69
1889 7416 5.152623 TCTGTTGATTTGTACTCCCTCTG 57.847 43.478 0.00 0.00 0.00 3.35
1890 7417 4.593206 TCTGTTGATTTGTACTCCCTCTGT 59.407 41.667 0.00 0.00 0.00 3.41
1891 7418 5.071788 TCTGTTGATTTGTACTCCCTCTGTT 59.928 40.000 0.00 0.00 0.00 3.16
1892 7419 5.305585 TGTTGATTTGTACTCCCTCTGTTC 58.694 41.667 0.00 0.00 0.00 3.18
1893 7420 4.553330 TGATTTGTACTCCCTCTGTTCC 57.447 45.455 0.00 0.00 0.00 3.62
1894 7421 4.168101 TGATTTGTACTCCCTCTGTTCCT 58.832 43.478 0.00 0.00 0.00 3.36
1895 7422 5.338632 TGATTTGTACTCCCTCTGTTCCTA 58.661 41.667 0.00 0.00 0.00 2.94
1896 7423 5.783360 TGATTTGTACTCCCTCTGTTCCTAA 59.217 40.000 0.00 0.00 0.00 2.69
1897 7424 6.271391 TGATTTGTACTCCCTCTGTTCCTAAA 59.729 38.462 0.00 0.00 0.00 1.85
1898 7425 6.697641 TTTGTACTCCCTCTGTTCCTAAAT 57.302 37.500 0.00 0.00 0.00 1.40
1899 7426 7.801893 TTTGTACTCCCTCTGTTCCTAAATA 57.198 36.000 0.00 0.00 0.00 1.40
1900 7427 7.989947 TTGTACTCCCTCTGTTCCTAAATAT 57.010 36.000 0.00 0.00 0.00 1.28
1901 7428 7.989947 TGTACTCCCTCTGTTCCTAAATATT 57.010 36.000 0.00 0.00 0.00 1.28
1902 7429 8.388656 TGTACTCCCTCTGTTCCTAAATATTT 57.611 34.615 5.89 5.89 0.00 1.40
1903 7430 8.265055 TGTACTCCCTCTGTTCCTAAATATTTG 58.735 37.037 11.05 1.40 0.00 2.32
1904 7431 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
1905 7432 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
1906 7433 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
1907 7434 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
1908 7435 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
1909 7436 8.678199 CCCTCTGTTCCTAAATATTTGTCTTTC 58.322 37.037 11.05 0.00 0.00 2.62
1910 7437 9.454859 CCTCTGTTCCTAAATATTTGTCTTTCT 57.545 33.333 11.05 0.00 0.00 2.52
1928 7455 7.750229 TCTTTCTAGACATTGCAAATGAACT 57.250 32.000 1.71 9.87 0.00 3.01
1929 7456 8.846943 TCTTTCTAGACATTGCAAATGAACTA 57.153 30.769 1.71 10.38 0.00 2.24
1930 7457 8.721478 TCTTTCTAGACATTGCAAATGAACTAC 58.279 33.333 1.71 0.00 0.00 2.73
1931 7458 8.621532 TTTCTAGACATTGCAAATGAACTACT 57.378 30.769 1.71 0.00 0.00 2.57
1932 7459 9.719355 TTTCTAGACATTGCAAATGAACTACTA 57.281 29.630 1.71 0.00 0.00 1.82
1933 7460 8.703604 TCTAGACATTGCAAATGAACTACTAC 57.296 34.615 1.71 0.00 0.00 2.73
1934 7461 8.311109 TCTAGACATTGCAAATGAACTACTACA 58.689 33.333 1.71 0.00 0.00 2.74
1935 7462 7.928307 AGACATTGCAAATGAACTACTACAT 57.072 32.000 1.71 0.00 0.00 2.29
1937 7464 9.618890 AGACATTGCAAATGAACTACTACATAT 57.381 29.630 1.71 0.00 0.00 1.78
1938 7465 9.655769 GACATTGCAAATGAACTACTACATATG 57.344 33.333 1.71 0.00 0.00 1.78
1939 7466 8.623903 ACATTGCAAATGAACTACTACATATGG 58.376 33.333 1.71 0.00 0.00 2.74
1940 7467 8.839343 CATTGCAAATGAACTACTACATATGGA 58.161 33.333 1.71 0.00 0.00 3.41
1941 7468 8.978874 TTGCAAATGAACTACTACATATGGAT 57.021 30.769 7.80 0.00 0.00 3.41
1942 7469 8.382030 TGCAAATGAACTACTACATATGGATG 57.618 34.615 7.80 0.00 39.16 3.51
1944 7471 9.489084 GCAAATGAACTACTACATATGGATGTA 57.511 33.333 7.80 6.18 44.77 2.29
1983 7510 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
1984 7511 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
1985 7512 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1986 7513 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
1987 7514 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
1988 7515 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
1989 7516 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
1990 7517 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
1991 7518 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
1992 7519 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
1993 7520 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
1994 7521 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
1995 7522 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
1996 7523 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
1997 7524 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
1998 7525 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
1999 7526 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
2000 7527 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
2001 7528 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
2002 7529 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
2003 7530 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
2004 7531 6.584185 TGCTCTGTATGTAGTCACTTGTTA 57.416 37.500 0.00 0.00 0.00 2.41
2005 7532 6.988522 TGCTCTGTATGTAGTCACTTGTTAA 58.011 36.000 0.00 0.00 0.00 2.01
2006 7533 7.438564 TGCTCTGTATGTAGTCACTTGTTAAA 58.561 34.615 0.00 0.00 0.00 1.52
2007 7534 7.929245 TGCTCTGTATGTAGTCACTTGTTAAAA 59.071 33.333 0.00 0.00 0.00 1.52
2008 7535 8.936864 GCTCTGTATGTAGTCACTTGTTAAAAT 58.063 33.333 0.00 0.00 0.00 1.82
2036 7563 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2037 7564 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2038 7565 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2039 7566 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2040 7567 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2041 7568 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2042 7569 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2045 7572 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
2050 7577 3.924922 AGGAACGGAGGGAGTATTACAT 58.075 45.455 0.00 0.00 0.00 2.29
2073 7600 9.435688 ACATTAACCTTTTAATTGCTTGAATCC 57.564 29.630 0.00 0.00 36.00 3.01
2074 7601 9.434420 CATTAACCTTTTAATTGCTTGAATCCA 57.566 29.630 0.00 0.00 36.00 3.41
2078 7617 7.854337 ACCTTTTAATTGCTTGAATCCATGAT 58.146 30.769 0.00 0.00 0.00 2.45
2116 7661 1.207089 CGATACCCTCTTGGCAGTGAA 59.793 52.381 0.00 0.00 37.83 3.18
2119 7666 0.179018 ACCCTCTTGGCAGTGAACAC 60.179 55.000 0.00 0.00 37.83 3.32
2162 7727 7.037438 GGTGCAATGATGTATTTGATCTGTTT 58.963 34.615 0.00 0.00 0.00 2.83
2225 7807 3.601435 TCTAGTCTGTCCTGAGAAGACG 58.399 50.000 0.00 0.00 44.07 4.18
2228 7810 1.880675 GTCTGTCCTGAGAAGACGTGA 59.119 52.381 0.00 0.00 37.04 4.35
2296 7880 3.780294 TGCCAGGTTAGATTGATACTGGT 59.220 43.478 9.90 0.00 45.48 4.00
2299 7883 6.101150 TGCCAGGTTAGATTGATACTGGTATT 59.899 38.462 9.90 0.00 45.48 1.89
2305 7889 7.171678 GGTTAGATTGATACTGGTATTCACAGC 59.828 40.741 0.00 0.00 39.55 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.519302 AAGCCTGCAGCCGTTTGT 60.519 55.556 8.66 0.00 45.47 2.83
6 7 2.256461 GAAGCCTGCAGCCGTTTG 59.744 61.111 8.66 0.00 45.47 2.93
11 12 1.823041 GATCTGGAAGCCTGCAGCC 60.823 63.158 8.66 4.48 45.47 4.85
12 13 2.178890 CGATCTGGAAGCCTGCAGC 61.179 63.158 8.66 3.91 40.66 5.25
13 14 1.088340 CACGATCTGGAAGCCTGCAG 61.088 60.000 6.78 6.78 42.15 4.41
14 15 1.078918 CACGATCTGGAAGCCTGCA 60.079 57.895 0.00 0.00 0.00 4.41
16 17 1.817099 GGCACGATCTGGAAGCCTG 60.817 63.158 0.00 0.00 42.01 4.85
17 18 2.586792 GGCACGATCTGGAAGCCT 59.413 61.111 0.00 0.00 42.01 4.58
18 19 1.817099 CAGGCACGATCTGGAAGCC 60.817 63.158 0.00 0.00 45.54 4.35
19 20 3.805267 CAGGCACGATCTGGAAGC 58.195 61.111 0.00 0.00 0.00 3.86
24 25 1.742761 AATGTTCCAGGCACGATCTG 58.257 50.000 0.00 0.00 0.00 2.90
25 26 3.845781 ATAATGTTCCAGGCACGATCT 57.154 42.857 0.00 0.00 0.00 2.75
28 29 1.742831 GCAATAATGTTCCAGGCACGA 59.257 47.619 0.00 0.00 0.00 4.35
29 30 1.745087 AGCAATAATGTTCCAGGCACG 59.255 47.619 0.00 0.00 0.00 5.34
32 33 2.094078 TGCAAGCAATAATGTTCCAGGC 60.094 45.455 0.00 0.00 0.00 4.85
33 34 3.872511 TGCAAGCAATAATGTTCCAGG 57.127 42.857 0.00 0.00 0.00 4.45
34 35 4.802039 GTGATGCAAGCAATAATGTTCCAG 59.198 41.667 0.00 0.00 28.10 3.86
35 36 4.381825 GGTGATGCAAGCAATAATGTTCCA 60.382 41.667 0.00 0.00 28.10 3.53
36 37 4.114794 GGTGATGCAAGCAATAATGTTCC 58.885 43.478 0.00 0.00 28.10 3.62
40 41 3.119065 TGTGGGTGATGCAAGCAATAATG 60.119 43.478 0.00 0.00 28.10 1.90
43 44 2.212812 TGTGGGTGATGCAAGCAATA 57.787 45.000 0.00 0.00 28.10 1.90
44 45 1.340088 TTGTGGGTGATGCAAGCAAT 58.660 45.000 0.00 0.00 28.10 3.56
45 46 1.340088 ATTGTGGGTGATGCAAGCAA 58.660 45.000 0.00 0.00 28.10 3.91
46 47 1.273048 GAATTGTGGGTGATGCAAGCA 59.727 47.619 0.00 0.00 0.00 3.91
47 48 1.404583 GGAATTGTGGGTGATGCAAGC 60.405 52.381 0.00 0.00 0.00 4.01
50 51 3.448093 TTAGGAATTGTGGGTGATGCA 57.552 42.857 0.00 0.00 0.00 3.96
51 52 3.509575 TGTTTAGGAATTGTGGGTGATGC 59.490 43.478 0.00 0.00 0.00 3.91
52 53 5.469479 GTTGTTTAGGAATTGTGGGTGATG 58.531 41.667 0.00 0.00 0.00 3.07
53 54 4.217550 CGTTGTTTAGGAATTGTGGGTGAT 59.782 41.667 0.00 0.00 0.00 3.06
55 56 3.855524 GCGTTGTTTAGGAATTGTGGGTG 60.856 47.826 0.00 0.00 0.00 4.61
56 57 2.295070 GCGTTGTTTAGGAATTGTGGGT 59.705 45.455 0.00 0.00 0.00 4.51
58 59 3.305110 GTGCGTTGTTTAGGAATTGTGG 58.695 45.455 0.00 0.00 0.00 4.17
61 62 3.252215 TCTGGTGCGTTGTTTAGGAATTG 59.748 43.478 0.00 0.00 0.00 2.32
63 64 3.134574 TCTGGTGCGTTGTTTAGGAAT 57.865 42.857 0.00 0.00 0.00 3.01
64 65 2.614983 GTTCTGGTGCGTTGTTTAGGAA 59.385 45.455 0.00 0.00 0.00 3.36
66 67 1.944024 TGTTCTGGTGCGTTGTTTAGG 59.056 47.619 0.00 0.00 0.00 2.69
67 68 3.896648 ATGTTCTGGTGCGTTGTTTAG 57.103 42.857 0.00 0.00 0.00 1.85
68 69 4.640789 AAATGTTCTGGTGCGTTGTTTA 57.359 36.364 0.00 0.00 0.00 2.01
72 73 2.808244 ACAAAATGTTCTGGTGCGTTG 58.192 42.857 0.00 0.00 0.00 4.10
73 74 4.518970 AGATACAAAATGTTCTGGTGCGTT 59.481 37.500 0.00 0.00 0.00 4.84
76 77 5.627499 TGAGATACAAAATGTTCTGGTGC 57.373 39.130 0.00 0.00 0.00 5.01
77 78 6.032094 GCATGAGATACAAAATGTTCTGGTG 58.968 40.000 0.00 0.00 0.00 4.17
123 4171 1.338105 CCGATCCACTCTGCAGTTTCA 60.338 52.381 14.67 0.00 0.00 2.69
272 4328 5.416083 TGATTTCATACTTGGACACGGTAG 58.584 41.667 0.00 0.00 0.00 3.18
428 4498 4.569943 TGGTGCTAGAAGCTTAACTGAAG 58.430 43.478 0.00 0.00 42.97 3.02
535 4605 8.035394 GTGACTGGTATACTCATTTTTCAGAGA 58.965 37.037 2.25 0.00 35.83 3.10
623 5231 7.094890 GCATGTCCTCCAATGACAGATTATTAG 60.095 40.741 0.00 0.00 45.20 1.73
708 5848 4.623595 GTGTCGTCTTCTTGAGATTCTTCC 59.376 45.833 0.00 0.00 36.61 3.46
814 6156 2.186644 CGGATCGGTGACATGGCA 59.813 61.111 0.00 0.00 0.00 4.92
838 6180 1.004230 ATGGTGATCCGGGGGAGAA 59.996 57.895 0.00 0.00 34.05 2.87
852 6194 2.697761 CGTGGACGGTCGAGATGGT 61.698 63.158 1.43 0.00 35.37 3.55
870 6212 3.113745 CCGTTGGATGCAGATGGC 58.886 61.111 0.00 0.00 45.13 4.40
876 6218 4.657408 TGCCTGCCGTTGGATGCA 62.657 61.111 0.00 0.00 35.86 3.96
940 6284 3.372730 TGCTGTGATTTGCGGGGC 61.373 61.111 0.00 0.00 0.00 5.80
974 6329 0.548510 GGAATGGGACTGGGAGGAAG 59.451 60.000 0.00 0.00 0.00 3.46
984 6339 0.323725 ACATGGCTGTGGAATGGGAC 60.324 55.000 0.00 0.00 33.22 4.46
988 6346 1.378882 CCGGACATGGCTGTGGAATG 61.379 60.000 6.64 0.00 35.14 2.67
989 6347 1.077501 CCGGACATGGCTGTGGAAT 60.078 57.895 6.64 0.00 35.14 3.01
990 6348 2.350895 CCGGACATGGCTGTGGAA 59.649 61.111 6.64 0.00 35.14 3.53
1427 6830 4.545610 ACAACACATGCGAATAACTTTGG 58.454 39.130 0.00 0.00 0.00 3.28
1462 6866 3.245797 CACGGTATCACAACAGAGACAG 58.754 50.000 0.00 0.00 31.57 3.51
1472 6885 5.529430 ACAAAATCAGAAACACGGTATCACA 59.471 36.000 0.00 0.00 0.00 3.58
1473 6886 5.997385 ACAAAATCAGAAACACGGTATCAC 58.003 37.500 0.00 0.00 0.00 3.06
1506 6919 1.927174 CCGCTTCAATAACAGAGACCG 59.073 52.381 0.00 0.00 0.00 4.79
1517 6939 0.238289 CAACTCGTTGCCGCTTCAAT 59.762 50.000 0.00 0.00 33.45 2.57
1522 6953 0.238289 CAAATCAACTCGTTGCCGCT 59.762 50.000 4.95 0.00 40.24 5.52
1530 6961 6.559810 TGGTAAATTATGGCAAATCAACTCG 58.440 36.000 0.00 0.00 0.00 4.18
1596 7031 6.488344 TGTTCAGTCACTATGGCATTACAAAA 59.512 34.615 4.78 0.00 0.00 2.44
1609 7054 4.814234 GGACACACAATTGTTCAGTCACTA 59.186 41.667 24.58 0.00 31.66 2.74
1682 7176 2.265367 TGCAGACTAACCCCAATCTCA 58.735 47.619 0.00 0.00 0.00 3.27
1692 7186 7.978982 ACTCAATGTATGAAATGCAGACTAAC 58.021 34.615 0.00 0.00 43.77 2.34
1734 7250 0.390472 CCAGAACTCTCGCCAAGGAC 60.390 60.000 0.00 0.00 0.00 3.85
1741 7257 1.516603 GTACGCCCAGAACTCTCGC 60.517 63.158 0.00 0.00 0.00 5.03
1760 7276 8.078596 AGTTTCACATTACAAGAGAGCAAATTC 58.921 33.333 0.00 0.00 0.00 2.17
1842 7368 8.652810 AAATAAAGCACAAATTATGATCCTGC 57.347 30.769 0.00 0.00 0.00 4.85
1883 7410 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
1884 7411 9.454859 AGAAAGACAAATATTTAGGAACAGAGG 57.545 33.333 0.00 0.00 0.00 3.69
1904 7431 7.750229 AGTTCATTTGCAATGTCTAGAAAGA 57.250 32.000 0.00 0.00 0.00 2.52
1905 7432 8.725148 AGTAGTTCATTTGCAATGTCTAGAAAG 58.275 33.333 0.00 0.00 0.00 2.62
1906 7433 8.621532 AGTAGTTCATTTGCAATGTCTAGAAA 57.378 30.769 0.00 0.00 0.00 2.52
1907 7434 9.151471 GTAGTAGTTCATTTGCAATGTCTAGAA 57.849 33.333 0.00 0.00 0.00 2.10
1908 7435 8.311109 TGTAGTAGTTCATTTGCAATGTCTAGA 58.689 33.333 0.00 0.00 0.00 2.43
1909 7436 8.479313 TGTAGTAGTTCATTTGCAATGTCTAG 57.521 34.615 0.00 0.00 0.00 2.43
1911 7438 7.928307 ATGTAGTAGTTCATTTGCAATGTCT 57.072 32.000 0.00 7.12 0.00 3.41
1912 7439 9.655769 CATATGTAGTAGTTCATTTGCAATGTC 57.344 33.333 0.00 0.50 0.00 3.06
1913 7440 8.623903 CCATATGTAGTAGTTCATTTGCAATGT 58.376 33.333 0.00 0.00 0.00 2.71
1914 7441 8.839343 TCCATATGTAGTAGTTCATTTGCAATG 58.161 33.333 0.00 1.04 0.00 2.82
1915 7442 8.978874 TCCATATGTAGTAGTTCATTTGCAAT 57.021 30.769 0.00 0.00 0.00 3.56
1916 7443 8.839343 CATCCATATGTAGTAGTTCATTTGCAA 58.161 33.333 0.00 0.00 0.00 4.08
1917 7444 7.992608 ACATCCATATGTAGTAGTTCATTTGCA 59.007 33.333 1.24 0.00 44.66 4.08
1918 7445 8.383318 ACATCCATATGTAGTAGTTCATTTGC 57.617 34.615 1.24 0.00 44.66 3.68
1963 7490 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
1964 7491 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
1965 7492 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
1966 7493 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
1967 7494 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
1968 7495 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
1969 7496 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
1970 7497 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
1971 7498 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
1972 7499 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
1973 7500 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
1974 7501 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
1975 7502 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
1976 7503 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
1977 7504 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
1978 7505 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
1979 7506 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
1980 7507 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
1981 7508 5.468540 AACAAGTGACTACATACAGAGCA 57.531 39.130 0.00 0.00 0.00 4.26
1982 7509 7.884816 TTTAACAAGTGACTACATACAGAGC 57.115 36.000 0.00 0.00 0.00 4.09
2010 7537 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2011 7538 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2012 7539 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2013 7540 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2014 7541 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2015 7542 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2016 7543 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2017 7544 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2018 7545 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2019 7546 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2020 7547 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2021 7548 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2022 7549 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2023 7550 7.731688 TGTAATACTCCCTCCGTTCCTAAATAT 59.268 37.037 0.00 0.00 0.00 1.28
2024 7551 7.068702 TGTAATACTCCCTCCGTTCCTAAATA 58.931 38.462 0.00 0.00 0.00 1.40
2025 7552 5.901276 TGTAATACTCCCTCCGTTCCTAAAT 59.099 40.000 0.00 0.00 0.00 1.40
2026 7553 5.271598 TGTAATACTCCCTCCGTTCCTAAA 58.728 41.667 0.00 0.00 0.00 1.85
2027 7554 4.870636 TGTAATACTCCCTCCGTTCCTAA 58.129 43.478 0.00 0.00 0.00 2.69
2028 7555 4.524802 TGTAATACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
2029 7556 3.393426 TGTAATACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
2030 7557 4.684484 AATGTAATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
2031 7558 5.987953 GGTTAATGTAATACTCCCTCCGTTC 59.012 44.000 0.00 0.00 0.00 3.95
2032 7559 5.664457 AGGTTAATGTAATACTCCCTCCGTT 59.336 40.000 0.00 0.00 0.00 4.44
2033 7560 5.214293 AGGTTAATGTAATACTCCCTCCGT 58.786 41.667 0.00 0.00 0.00 4.69
2034 7561 5.803237 AGGTTAATGTAATACTCCCTCCG 57.197 43.478 0.00 0.00 0.00 4.63
2035 7562 9.910267 TTAAAAGGTTAATGTAATACTCCCTCC 57.090 33.333 0.00 0.00 0.00 4.30
2050 7577 9.434420 CATGGATTCAAGCAATTAAAAGGTTAA 57.566 29.630 0.00 0.00 33.76 2.01
2066 7593 6.448207 TGTATTCGCAAATCATGGATTCAA 57.552 33.333 0.00 0.00 30.29 2.69
2072 7599 6.955407 CGTGTATATGTATTCGCAAATCATGG 59.045 38.462 0.00 0.00 0.00 3.66
2073 7600 7.728895 TCGTGTATATGTATTCGCAAATCATG 58.271 34.615 0.00 0.00 0.00 3.07
2074 7601 7.883229 TCGTGTATATGTATTCGCAAATCAT 57.117 32.000 0.00 0.00 0.00 2.45
2075 7602 7.883229 ATCGTGTATATGTATTCGCAAATCA 57.117 32.000 0.00 0.00 0.00 2.57
2078 7617 6.587226 GGGTATCGTGTATATGTATTCGCAAA 59.413 38.462 0.00 0.00 0.00 3.68
2116 7661 3.244700 CCTCAACTGAAGGATGAAGGTGT 60.245 47.826 0.00 0.00 30.45 4.16
2119 7666 3.341823 CACCTCAACTGAAGGATGAAGG 58.658 50.000 0.00 0.00 0.00 3.46
2225 7807 5.393461 GGAATGGTGGTTGAATTCTGATCAC 60.393 44.000 13.92 13.92 32.15 3.06
2228 7810 4.463891 GTGGAATGGTGGTTGAATTCTGAT 59.536 41.667 7.05 0.00 32.15 2.90
2275 7858 4.423625 ACCAGTATCAATCTAACCTGGC 57.576 45.455 0.00 0.00 34.37 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.