Multiple sequence alignment - TraesCS3B01G167500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G167500 chr3B 100.000 3239 0 0 1 3239 167864776 167861538 0.000000e+00 5982.0
1 TraesCS3B01G167500 chr3D 90.384 2631 130 51 566 3136 112960442 112963009 0.000000e+00 3343.0
2 TraesCS3B01G167500 chr3D 93.814 97 6 0 3143 3239 364727843 364727939 2.600000e-31 147.0
3 TraesCS3B01G167500 chr3D 74.359 351 46 31 96 412 424650011 424649671 3.420000e-20 110.0
4 TraesCS3B01G167500 chr3D 73.107 383 56 32 67 412 56283376 56283748 3.440000e-15 93.5
5 TraesCS3B01G167500 chr3D 83.838 99 15 1 316 413 137725127 137725029 3.440000e-15 93.5
6 TraesCS3B01G167500 chr2B 87.343 2149 155 45 710 2802 137856710 137854623 0.000000e+00 2353.0
7 TraesCS3B01G167500 chr2B 94.554 202 10 1 2836 3037 137854352 137854152 8.730000e-81 311.0
8 TraesCS3B01G167500 chr2B 77.052 536 75 31 1 507 541904194 541903678 6.890000e-67 265.0
9 TraesCS3B01G167500 chr2B 86.500 200 22 4 5 204 131839226 131839420 7.040000e-52 215.0
10 TraesCS3B01G167500 chr2B 91.057 123 8 1 530 652 137856848 137856729 2.590000e-36 163.0
11 TraesCS3B01G167500 chr2B 73.898 295 50 22 204 487 681944490 681944212 3.440000e-15 93.5
12 TraesCS3B01G167500 chr2B 90.196 51 5 0 198 248 798666165 798666215 2.090000e-07 67.6
13 TraesCS3B01G167500 chr2B 72.581 310 45 30 198 483 1663953 1664246 7.500000e-07 65.8
14 TraesCS3B01G167500 chr2D 87.715 2035 171 38 772 2763 85759079 85757081 0.000000e+00 2300.0
15 TraesCS3B01G167500 chr2D 92.553 188 10 2 2759 2943 85756817 85756631 1.920000e-67 267.0
16 TraesCS3B01G167500 chr2D 85.930 199 23 1 5 203 385157700 385157507 1.180000e-49 207.0
17 TraesCS3B01G167500 chr2D 74.940 415 60 24 94 474 591304872 591304468 2.010000e-32 150.0
18 TraesCS3B01G167500 chr2D 93.976 83 2 1 541 623 85766047 85765968 4.390000e-24 122.0
19 TraesCS3B01G167500 chr2D 88.889 90 9 1 736 825 85759175 85759087 3.420000e-20 110.0
20 TraesCS3B01G167500 chr2A 86.913 2002 170 37 770 2719 86271886 86269925 0.000000e+00 2161.0
21 TraesCS3B01G167500 chr2A 89.256 242 22 1 2839 3076 86266948 86266707 1.890000e-77 300.0
22 TraesCS3B01G167500 chr2A 88.889 144 10 2 2708 2845 86267303 86267160 4.300000e-39 172.0
23 TraesCS3B01G167500 chr2A 90.426 94 6 1 530 623 86273124 86273034 1.580000e-23 121.0
24 TraesCS3B01G167500 chr2A 89.362 94 7 1 530 623 86272148 86272058 7.340000e-22 115.0
25 TraesCS3B01G167500 chr2A 89.362 94 7 1 530 623 86274082 86273992 7.340000e-22 115.0
26 TraesCS3B01G167500 chr2A 88.889 90 9 1 736 825 86273027 86272939 3.420000e-20 110.0
27 TraesCS3B01G167500 chr2A 88.889 90 9 1 736 825 86273984 86273896 3.420000e-20 110.0
28 TraesCS3B01G167500 chr2A 86.667 90 11 1 736 825 86272050 86271962 7.400000e-17 99.0
29 TraesCS3B01G167500 chr3A 83.564 2099 171 84 592 2607 108729305 108731312 0.000000e+00 1805.0
30 TraesCS3B01G167500 chr3A 91.489 94 1 5 2863 2950 108731973 108732065 4.390000e-24 122.0
31 TraesCS3B01G167500 chr3A 91.667 48 4 0 1312 1359 526508760 526508807 2.090000e-07 67.6
32 TraesCS3B01G167500 chr1B 79.630 378 62 12 95 463 389226022 389226393 1.150000e-64 257.0
33 TraesCS3B01G167500 chr5D 77.240 558 46 25 1 507 370308007 370308534 5.360000e-63 252.0
34 TraesCS3B01G167500 chr5D 78.589 411 59 16 1 400 564918488 564918096 8.980000e-61 244.0
35 TraesCS3B01G167500 chr5D 90.816 98 6 2 3143 3238 294406127 294406223 9.430000e-26 128.0
36 TraesCS3B01G167500 chr5D 93.878 49 3 0 385 433 175770894 175770846 1.250000e-09 75.0
37 TraesCS3B01G167500 chr1D 77.400 500 61 26 5 468 480795257 480794774 1.930000e-62 250.0
38 TraesCS3B01G167500 chr1D 84.848 99 12 2 316 411 232879674 232879576 2.660000e-16 97.1
39 TraesCS3B01G167500 chr7A 77.626 438 50 24 112 507 69312184 69311753 4.210000e-54 222.0
40 TraesCS3B01G167500 chr7A 81.604 212 30 8 1 204 646593580 646593790 2.000000e-37 167.0
41 TraesCS3B01G167500 chr7A 83.516 91 14 1 313 402 121150761 121150851 2.070000e-12 84.2
42 TraesCS3B01G167500 chr4D 76.923 455 59 16 95 507 401352359 401352809 1.960000e-52 217.0
43 TraesCS3B01G167500 chr7B 74.858 529 97 26 1 507 295508908 295508394 1.180000e-49 207.0
44 TraesCS3B01G167500 chr7B 83.824 204 26 4 1 204 609181685 609181489 1.530000e-43 187.0
45 TraesCS3B01G167500 chr7B 75.490 204 41 9 204 402 658472429 658472230 1.240000e-14 91.6
46 TraesCS3B01G167500 chr7B 81.818 88 14 2 3152 3239 683363407 683363492 4.480000e-09 73.1
47 TraesCS3B01G167500 chr5A 84.804 204 26 4 1 204 328839009 328838811 1.970000e-47 200.0
48 TraesCS3B01G167500 chr5A 94.444 36 1 1 1 36 73804535 73804501 2.000000e-03 54.7
49 TraesCS3B01G167500 chr5B 93.814 97 5 1 3143 3239 294740855 294740760 9.370000e-31 145.0
50 TraesCS3B01G167500 chr5B 90.385 52 5 0 203 254 665716015 665715964 5.800000e-08 69.4
51 TraesCS3B01G167500 chr7D 76.245 261 42 17 213 464 433877686 433877437 1.580000e-23 121.0
52 TraesCS3B01G167500 chr6D 92.683 41 3 0 203 243 409482774 409482814 3.490000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G167500 chr3B 167861538 167864776 3238 True 5982.000000 5982 100.000000 1 3239 1 chr3B.!!$R1 3238
1 TraesCS3B01G167500 chr3D 112960442 112963009 2567 False 3343.000000 3343 90.384000 566 3136 1 chr3D.!!$F2 2570
2 TraesCS3B01G167500 chr2B 137854152 137856848 2696 True 942.333333 2353 90.984667 530 3037 3 chr2B.!!$R3 2507
3 TraesCS3B01G167500 chr2B 541903678 541904194 516 True 265.000000 265 77.052000 1 507 1 chr2B.!!$R1 506
4 TraesCS3B01G167500 chr2D 85756631 85759175 2544 True 892.333333 2300 89.719000 736 2943 3 chr2D.!!$R4 2207
5 TraesCS3B01G167500 chr2A 86266707 86274082 7375 True 367.000000 2161 88.739222 530 3076 9 chr2A.!!$R1 2546
6 TraesCS3B01G167500 chr3A 108729305 108732065 2760 False 963.500000 1805 87.526500 592 2950 2 chr3A.!!$F2 2358
7 TraesCS3B01G167500 chr5D 370308007 370308534 527 False 252.000000 252 77.240000 1 507 1 chr5D.!!$F2 506
8 TraesCS3B01G167500 chr7B 295508394 295508908 514 True 207.000000 207 74.858000 1 507 1 chr7B.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 351 0.040425 GCATTTTATAGGCGTGCCGG 60.04 55.0 5.02 0.0 41.95 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 4477 0.319986 GGGCCGGATCTCGAATTCTC 60.32 60.0 5.05 0.0 42.43 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.917329 GATGATCCTCGTCGGTGATAA 57.083 47.619 0.00 0.00 0.00 1.75
22 23 3.827625 GATGATCCTCGTCGGTGATAAG 58.172 50.000 0.00 0.00 0.00 1.73
23 24 1.337071 TGATCCTCGTCGGTGATAAGC 59.663 52.381 0.00 0.00 0.00 3.09
24 25 0.674534 ATCCTCGTCGGTGATAAGCC 59.325 55.000 0.00 0.00 0.00 4.35
31 32 4.929707 GGTGATAAGCCGCGGGGG 62.930 72.222 29.38 6.75 39.58 5.40
45 46 2.044620 GGGGGAGGGAGGTTCCAT 59.955 66.667 0.00 0.00 38.64 3.41
46 47 2.079288 GGGGGAGGGAGGTTCCATC 61.079 68.421 1.29 1.29 45.96 3.51
47 48 1.004891 GGGGAGGGAGGTTCCATCT 59.995 63.158 9.34 0.00 45.95 2.90
48 49 1.057275 GGGGAGGGAGGTTCCATCTC 61.057 65.000 9.34 5.49 46.59 2.75
49 50 1.057275 GGGAGGGAGGTTCCATCTCC 61.057 65.000 9.34 9.89 45.95 3.71
52 53 2.506472 GGAGGTTCCATCTCCCGC 59.494 66.667 0.00 0.00 43.71 6.13
53 54 2.107141 GAGGTTCCATCTCCCGCG 59.893 66.667 0.00 0.00 0.00 6.46
54 55 2.683933 AGGTTCCATCTCCCGCGT 60.684 61.111 4.92 0.00 0.00 6.01
55 56 2.202892 GGTTCCATCTCCCGCGTC 60.203 66.667 4.92 0.00 0.00 5.19
56 57 2.582498 GTTCCATCTCCCGCGTCG 60.582 66.667 4.92 0.00 0.00 5.12
57 58 3.066190 TTCCATCTCCCGCGTCGT 61.066 61.111 4.92 0.00 0.00 4.34
58 59 3.060020 TTCCATCTCCCGCGTCGTC 62.060 63.158 4.92 0.00 0.00 4.20
59 60 3.822192 CCATCTCCCGCGTCGTCA 61.822 66.667 4.92 0.00 0.00 4.35
60 61 2.579787 CATCTCCCGCGTCGTCAC 60.580 66.667 4.92 0.00 0.00 3.67
61 62 3.823330 ATCTCCCGCGTCGTCACC 61.823 66.667 4.92 0.00 0.00 4.02
63 64 4.477975 CTCCCGCGTCGTCACCTC 62.478 72.222 4.92 0.00 0.00 3.85
69 70 3.367743 CGTCGTCACCTCCGGGAA 61.368 66.667 0.00 0.00 36.25 3.97
70 71 2.572284 GTCGTCACCTCCGGGAAG 59.428 66.667 0.00 0.00 36.25 3.46
71 72 2.116772 TCGTCACCTCCGGGAAGT 59.883 61.111 0.00 0.00 36.25 3.01
72 73 1.532316 TCGTCACCTCCGGGAAGTT 60.532 57.895 0.00 0.00 36.25 2.66
73 74 1.080025 CGTCACCTCCGGGAAGTTC 60.080 63.158 0.00 0.00 36.25 3.01
74 75 1.812686 CGTCACCTCCGGGAAGTTCA 61.813 60.000 0.00 0.00 36.25 3.18
75 76 0.613777 GTCACCTCCGGGAAGTTCAT 59.386 55.000 0.00 0.00 36.25 2.57
76 77 0.613260 TCACCTCCGGGAAGTTCATG 59.387 55.000 0.00 0.00 36.25 3.07
77 78 0.324943 CACCTCCGGGAAGTTCATGT 59.675 55.000 0.00 0.00 36.25 3.21
78 79 0.613777 ACCTCCGGGAAGTTCATGTC 59.386 55.000 0.00 0.00 36.25 3.06
79 80 0.107654 CCTCCGGGAAGTTCATGTCC 60.108 60.000 0.00 0.00 33.58 4.02
84 85 2.854522 GGAAGTTCATGTCCCACCG 58.145 57.895 5.01 0.00 0.00 4.94
85 86 0.676782 GGAAGTTCATGTCCCACCGG 60.677 60.000 0.00 0.00 0.00 5.28
86 87 0.676782 GAAGTTCATGTCCCACCGGG 60.677 60.000 6.32 0.00 46.11 5.73
147 148 3.744719 CTCGTGGGCGGTCTCGAA 61.745 66.667 0.00 0.00 39.00 3.71
148 149 3.685214 CTCGTGGGCGGTCTCGAAG 62.685 68.421 0.00 0.00 39.00 3.79
149 150 4.796231 CGTGGGCGGTCTCGAAGG 62.796 72.222 0.00 0.00 39.00 3.46
150 151 3.692406 GTGGGCGGTCTCGAAGGT 61.692 66.667 0.00 0.00 39.00 3.50
151 152 3.691342 TGGGCGGTCTCGAAGGTG 61.691 66.667 0.00 0.00 39.00 4.00
155 156 3.744719 CGGTCTCGAAGGTGCCGA 61.745 66.667 6.87 0.00 44.57 5.54
159 160 4.821589 CTCGAAGGTGCCGAGGCC 62.822 72.222 12.05 0.00 46.85 5.19
162 163 4.821589 GAAGGTGCCGAGGCCGAG 62.822 72.222 12.05 0.00 41.09 4.63
183 184 2.740826 CACGTCGCCGGACCAAAT 60.741 61.111 5.05 0.00 40.17 2.32
184 185 2.433664 ACGTCGCCGGACCAAATC 60.434 61.111 5.05 0.00 40.17 2.17
185 186 2.125673 CGTCGCCGGACCAAATCT 60.126 61.111 5.05 0.00 40.17 2.40
186 187 2.165301 CGTCGCCGGACCAAATCTC 61.165 63.158 5.05 0.00 40.17 2.75
187 188 1.218316 GTCGCCGGACCAAATCTCT 59.782 57.895 5.05 0.00 37.19 3.10
188 189 1.084370 GTCGCCGGACCAAATCTCTG 61.084 60.000 5.05 0.00 37.19 3.35
189 190 2.464459 CGCCGGACCAAATCTCTGC 61.464 63.158 5.05 0.00 0.00 4.26
190 191 2.464459 GCCGGACCAAATCTCTGCG 61.464 63.158 5.05 0.00 0.00 5.18
191 192 1.815421 CCGGACCAAATCTCTGCGG 60.815 63.158 0.00 0.00 0.00 5.69
192 193 1.218047 CGGACCAAATCTCTGCGGA 59.782 57.895 0.00 0.00 0.00 5.54
193 194 0.807667 CGGACCAAATCTCTGCGGAG 60.808 60.000 16.98 16.98 40.73 4.63
200 201 4.135153 TCTCTGCGGAGAAGGCGC 62.135 66.667 23.14 0.00 44.62 6.53
257 258 4.778415 CGGTGGTGACGAGGCGAG 62.778 72.222 0.00 0.00 0.00 5.03
258 259 3.371063 GGTGGTGACGAGGCGAGA 61.371 66.667 0.00 0.00 0.00 4.04
259 260 2.649034 GTGGTGACGAGGCGAGAA 59.351 61.111 0.00 0.00 0.00 2.87
260 261 1.006571 GTGGTGACGAGGCGAGAAA 60.007 57.895 0.00 0.00 0.00 2.52
261 262 0.599204 GTGGTGACGAGGCGAGAAAA 60.599 55.000 0.00 0.00 0.00 2.29
262 263 0.599204 TGGTGACGAGGCGAGAAAAC 60.599 55.000 0.00 0.00 0.00 2.43
263 264 1.615107 GGTGACGAGGCGAGAAAACG 61.615 60.000 0.00 0.00 0.00 3.60
264 265 1.372499 TGACGAGGCGAGAAAACGG 60.372 57.895 0.00 0.00 0.00 4.44
270 271 4.261888 GCGAGAAAACGGCAGAGA 57.738 55.556 0.00 0.00 0.00 3.10
271 272 2.074124 GCGAGAAAACGGCAGAGAG 58.926 57.895 0.00 0.00 0.00 3.20
272 273 0.388649 GCGAGAAAACGGCAGAGAGA 60.389 55.000 0.00 0.00 0.00 3.10
273 274 1.623359 CGAGAAAACGGCAGAGAGAG 58.377 55.000 0.00 0.00 0.00 3.20
274 275 1.068194 CGAGAAAACGGCAGAGAGAGT 60.068 52.381 0.00 0.00 0.00 3.24
275 276 2.333014 GAGAAAACGGCAGAGAGAGTG 58.667 52.381 0.00 0.00 0.00 3.51
276 277 1.964223 AGAAAACGGCAGAGAGAGTGA 59.036 47.619 0.00 0.00 0.00 3.41
277 278 2.365617 AGAAAACGGCAGAGAGAGTGAA 59.634 45.455 0.00 0.00 0.00 3.18
278 279 2.910688 AAACGGCAGAGAGAGTGAAA 57.089 45.000 0.00 0.00 0.00 2.69
279 280 2.447244 AACGGCAGAGAGAGTGAAAG 57.553 50.000 0.00 0.00 0.00 2.62
280 281 0.605589 ACGGCAGAGAGAGTGAAAGG 59.394 55.000 0.00 0.00 0.00 3.11
281 282 0.891373 CGGCAGAGAGAGTGAAAGGA 59.109 55.000 0.00 0.00 0.00 3.36
282 283 1.135141 CGGCAGAGAGAGTGAAAGGAG 60.135 57.143 0.00 0.00 0.00 3.69
283 284 2.175202 GGCAGAGAGAGTGAAAGGAGA 58.825 52.381 0.00 0.00 0.00 3.71
284 285 2.166254 GGCAGAGAGAGTGAAAGGAGAG 59.834 54.545 0.00 0.00 0.00 3.20
285 286 3.088532 GCAGAGAGAGTGAAAGGAGAGA 58.911 50.000 0.00 0.00 0.00 3.10
286 287 3.129287 GCAGAGAGAGTGAAAGGAGAGAG 59.871 52.174 0.00 0.00 0.00 3.20
287 288 3.129287 CAGAGAGAGTGAAAGGAGAGAGC 59.871 52.174 0.00 0.00 0.00 4.09
288 289 2.091541 AGAGAGTGAAAGGAGAGAGCG 58.908 52.381 0.00 0.00 0.00 5.03
289 290 1.134175 GAGAGTGAAAGGAGAGAGCGG 59.866 57.143 0.00 0.00 0.00 5.52
290 291 0.459411 GAGTGAAAGGAGAGAGCGGC 60.459 60.000 0.00 0.00 0.00 6.53
291 292 1.188219 AGTGAAAGGAGAGAGCGGCA 61.188 55.000 1.45 0.00 0.00 5.69
292 293 1.016653 GTGAAAGGAGAGAGCGGCAC 61.017 60.000 1.45 0.00 0.00 5.01
293 294 1.293498 GAAAGGAGAGAGCGGCACA 59.707 57.895 1.45 0.00 0.00 4.57
294 295 0.739112 GAAAGGAGAGAGCGGCACAG 60.739 60.000 1.45 0.00 0.00 3.66
295 296 2.177594 AAAGGAGAGAGCGGCACAGG 62.178 60.000 1.45 0.00 0.00 4.00
296 297 4.154347 GGAGAGAGCGGCACAGGG 62.154 72.222 1.45 0.00 0.00 4.45
297 298 4.828925 GAGAGAGCGGCACAGGGC 62.829 72.222 1.45 0.00 43.74 5.19
308 309 2.665000 ACAGGGCGTGTGATGAGG 59.335 61.111 12.67 0.00 38.28 3.86
309 310 2.217038 ACAGGGCGTGTGATGAGGT 61.217 57.895 12.67 0.00 38.28 3.85
310 311 1.742880 CAGGGCGTGTGATGAGGTG 60.743 63.158 0.00 0.00 0.00 4.00
311 312 2.436646 GGGCGTGTGATGAGGTGG 60.437 66.667 0.00 0.00 0.00 4.61
312 313 2.662596 GGCGTGTGATGAGGTGGA 59.337 61.111 0.00 0.00 0.00 4.02
313 314 1.448540 GGCGTGTGATGAGGTGGAG 60.449 63.158 0.00 0.00 0.00 3.86
314 315 1.293498 GCGTGTGATGAGGTGGAGT 59.707 57.895 0.00 0.00 0.00 3.85
315 316 1.016130 GCGTGTGATGAGGTGGAGTG 61.016 60.000 0.00 0.00 0.00 3.51
316 317 1.016130 CGTGTGATGAGGTGGAGTGC 61.016 60.000 0.00 0.00 0.00 4.40
317 318 1.016130 GTGTGATGAGGTGGAGTGCG 61.016 60.000 0.00 0.00 0.00 5.34
318 319 1.184970 TGTGATGAGGTGGAGTGCGA 61.185 55.000 0.00 0.00 0.00 5.10
319 320 0.176680 GTGATGAGGTGGAGTGCGAT 59.823 55.000 0.00 0.00 0.00 4.58
320 321 0.176449 TGATGAGGTGGAGTGCGATG 59.824 55.000 0.00 0.00 0.00 3.84
321 322 0.531532 GATGAGGTGGAGTGCGATGG 60.532 60.000 0.00 0.00 0.00 3.51
322 323 1.976132 ATGAGGTGGAGTGCGATGGG 61.976 60.000 0.00 0.00 0.00 4.00
323 324 2.284625 AGGTGGAGTGCGATGGGA 60.285 61.111 0.00 0.00 0.00 4.37
324 325 2.187946 GGTGGAGTGCGATGGGAG 59.812 66.667 0.00 0.00 0.00 4.30
325 326 2.187946 GTGGAGTGCGATGGGAGG 59.812 66.667 0.00 0.00 0.00 4.30
326 327 3.083349 TGGAGTGCGATGGGAGGG 61.083 66.667 0.00 0.00 0.00 4.30
327 328 4.554036 GGAGTGCGATGGGAGGGC 62.554 72.222 0.00 0.00 0.00 5.19
328 329 3.785859 GAGTGCGATGGGAGGGCA 61.786 66.667 0.00 0.00 0.00 5.36
331 332 4.100084 TGCGATGGGAGGGCACTG 62.100 66.667 0.00 0.00 0.00 3.66
333 334 4.100084 CGATGGGAGGGCACTGCA 62.100 66.667 10.58 0.00 36.68 4.41
334 335 2.599597 GATGGGAGGGCACTGCAT 59.400 61.111 10.58 0.41 36.68 3.96
335 336 1.076485 GATGGGAGGGCACTGCATT 60.076 57.895 10.58 0.00 36.68 3.56
336 337 0.685458 GATGGGAGGGCACTGCATTT 60.685 55.000 10.58 0.00 36.68 2.32
337 338 0.252375 ATGGGAGGGCACTGCATTTT 60.252 50.000 10.58 0.00 36.68 1.82
338 339 0.407528 TGGGAGGGCACTGCATTTTA 59.592 50.000 10.58 0.00 36.68 1.52
339 340 1.006998 TGGGAGGGCACTGCATTTTAT 59.993 47.619 10.58 0.00 36.68 1.40
340 341 2.243478 TGGGAGGGCACTGCATTTTATA 59.757 45.455 10.58 0.00 36.68 0.98
341 342 2.887152 GGGAGGGCACTGCATTTTATAG 59.113 50.000 10.58 0.00 36.68 1.31
342 343 2.887152 GGAGGGCACTGCATTTTATAGG 59.113 50.000 1.00 0.00 34.81 2.57
343 344 2.294512 GAGGGCACTGCATTTTATAGGC 59.705 50.000 0.00 0.00 0.00 3.93
344 345 1.001378 GGGCACTGCATTTTATAGGCG 60.001 52.381 2.82 0.00 0.00 5.52
345 346 1.676006 GGCACTGCATTTTATAGGCGT 59.324 47.619 2.82 0.00 0.00 5.68
346 347 2.541588 GGCACTGCATTTTATAGGCGTG 60.542 50.000 2.82 0.00 36.16 5.34
347 348 2.719798 CACTGCATTTTATAGGCGTGC 58.280 47.619 0.00 0.00 36.39 5.34
348 349 1.676006 ACTGCATTTTATAGGCGTGCC 59.324 47.619 1.67 1.67 35.03 5.01
349 350 0.660488 TGCATTTTATAGGCGTGCCG 59.340 50.000 5.02 0.00 41.95 5.69
350 351 0.040425 GCATTTTATAGGCGTGCCGG 60.040 55.000 5.02 0.00 41.95 6.13
351 352 1.588674 CATTTTATAGGCGTGCCGGA 58.411 50.000 5.05 0.00 41.95 5.14
352 353 1.263217 CATTTTATAGGCGTGCCGGAC 59.737 52.381 5.05 0.00 41.95 4.79
369 370 3.485110 CGCTGCACGCCAAATCTA 58.515 55.556 0.00 0.00 34.21 1.98
370 371 1.349627 CGCTGCACGCCAAATCTAG 59.650 57.895 0.00 0.00 34.21 2.43
371 372 1.063166 GCTGCACGCCAAATCTAGC 59.937 57.895 0.00 0.00 0.00 3.42
372 373 1.647545 GCTGCACGCCAAATCTAGCA 61.648 55.000 0.00 0.00 0.00 3.49
373 374 0.097674 CTGCACGCCAAATCTAGCAC 59.902 55.000 0.00 0.00 0.00 4.40
374 375 1.060937 GCACGCCAAATCTAGCACG 59.939 57.895 0.00 0.00 0.00 5.34
375 376 1.060937 CACGCCAAATCTAGCACGC 59.939 57.895 0.00 0.00 0.00 5.34
376 377 2.321060 CGCCAAATCTAGCACGCG 59.679 61.111 3.53 3.53 0.00 6.01
377 378 2.023320 GCCAAATCTAGCACGCGC 59.977 61.111 5.73 0.00 38.99 6.86
378 379 2.709475 CCAAATCTAGCACGCGCC 59.291 61.111 5.73 0.00 39.83 6.53
379 380 2.709475 CAAATCTAGCACGCGCCC 59.291 61.111 5.73 0.00 39.83 6.13
380 381 2.890474 AAATCTAGCACGCGCCCG 60.890 61.111 5.73 0.00 39.83 6.13
381 382 4.891727 AATCTAGCACGCGCCCGG 62.892 66.667 5.73 0.00 39.83 5.73
392 393 4.419939 CGCCCGGCTGCTTTTTCC 62.420 66.667 8.05 0.00 0.00 3.13
393 394 4.069232 GCCCGGCTGCTTTTTCCC 62.069 66.667 0.71 0.00 0.00 3.97
394 395 3.747976 CCCGGCTGCTTTTTCCCG 61.748 66.667 0.00 0.00 40.39 5.14
395 396 4.419939 CCGGCTGCTTTTTCCCGC 62.420 66.667 0.00 0.00 39.42 6.13
396 397 4.759096 CGGCTGCTTTTTCCCGCG 62.759 66.667 0.00 0.00 33.77 6.46
413 414 4.096558 GCGCGCAATCGTTTCCCA 62.097 61.111 29.10 0.00 38.14 4.37
414 415 2.791256 CGCGCAATCGTTTCCCAT 59.209 55.556 8.75 0.00 38.14 4.00
415 416 1.583451 CGCGCAATCGTTTCCCATG 60.583 57.895 8.75 0.00 38.14 3.66
416 417 1.873572 GCGCAATCGTTTCCCATGC 60.874 57.895 0.30 0.00 38.14 4.06
417 418 4.382728 GCAATCGTTTCCCATGCG 57.617 55.556 0.00 0.00 0.00 4.73
418 419 1.873572 GCAATCGTTTCCCATGCGC 60.874 57.895 0.00 0.00 0.00 6.09
419 420 1.226660 CAATCGTTTCCCATGCGCC 60.227 57.895 4.18 0.00 0.00 6.53
420 421 1.378514 AATCGTTTCCCATGCGCCT 60.379 52.632 4.18 0.00 0.00 5.52
421 422 1.656818 AATCGTTTCCCATGCGCCTG 61.657 55.000 4.18 5.00 0.00 4.85
422 423 2.535485 ATCGTTTCCCATGCGCCTGA 62.535 55.000 14.72 0.00 0.00 3.86
423 424 2.753966 CGTTTCCCATGCGCCTGAG 61.754 63.158 14.72 0.17 0.00 3.35
424 425 1.675641 GTTTCCCATGCGCCTGAGT 60.676 57.895 14.72 0.00 0.00 3.41
425 426 1.074775 TTTCCCATGCGCCTGAGTT 59.925 52.632 14.72 0.00 0.00 3.01
426 427 0.539438 TTTCCCATGCGCCTGAGTTT 60.539 50.000 14.72 0.00 0.00 2.66
427 428 0.539438 TTCCCATGCGCCTGAGTTTT 60.539 50.000 14.72 0.00 0.00 2.43
428 429 0.539438 TCCCATGCGCCTGAGTTTTT 60.539 50.000 14.72 0.00 0.00 1.94
429 430 0.109132 CCCATGCGCCTGAGTTTTTC 60.109 55.000 14.72 0.00 0.00 2.29
430 431 0.454957 CCATGCGCCTGAGTTTTTCG 60.455 55.000 14.72 0.00 0.00 3.46
431 432 1.067199 CATGCGCCTGAGTTTTTCGC 61.067 55.000 6.88 0.00 45.23 4.70
432 433 2.126850 GCGCCTGAGTTTTTCGCC 60.127 61.111 0.00 0.00 39.91 5.54
433 434 2.617274 GCGCCTGAGTTTTTCGCCT 61.617 57.895 0.00 0.00 39.91 5.52
434 435 1.497722 CGCCTGAGTTTTTCGCCTC 59.502 57.895 0.00 0.00 0.00 4.70
435 436 1.876664 GCCTGAGTTTTTCGCCTCC 59.123 57.895 0.00 0.00 0.00 4.30
436 437 1.912371 GCCTGAGTTTTTCGCCTCCG 61.912 60.000 0.00 0.00 0.00 4.63
437 438 1.497722 CTGAGTTTTTCGCCTCCGC 59.502 57.895 0.00 0.00 0.00 5.54
438 439 0.951040 CTGAGTTTTTCGCCTCCGCT 60.951 55.000 0.00 0.00 0.00 5.52
439 440 1.227999 TGAGTTTTTCGCCTCCGCTG 61.228 55.000 0.00 0.00 0.00 5.18
440 441 0.949105 GAGTTTTTCGCCTCCGCTGA 60.949 55.000 0.00 0.00 0.00 4.26
441 442 0.534203 AGTTTTTCGCCTCCGCTGAA 60.534 50.000 0.00 0.00 0.00 3.02
442 443 0.110192 GTTTTTCGCCTCCGCTGAAG 60.110 55.000 0.00 0.00 32.09 3.02
443 444 1.852067 TTTTTCGCCTCCGCTGAAGC 61.852 55.000 0.00 0.00 32.09 3.86
453 454 3.099574 GCTGAAGCGCGCAAAACC 61.100 61.111 35.10 16.71 0.00 3.27
454 455 2.331098 CTGAAGCGCGCAAAACCA 59.669 55.556 35.10 20.24 0.00 3.67
455 456 2.010817 CTGAAGCGCGCAAAACCAC 61.011 57.895 35.10 15.36 0.00 4.16
456 457 2.729491 GAAGCGCGCAAAACCACC 60.729 61.111 35.10 8.50 0.00 4.61
457 458 4.279043 AAGCGCGCAAAACCACCC 62.279 61.111 35.10 0.00 0.00 4.61
464 465 4.639171 CAAAACCACCCCGCGCAC 62.639 66.667 8.75 0.00 0.00 5.34
471 472 4.992511 ACCCCGCGCACGCTAAAA 62.993 61.111 13.70 0.00 39.32 1.52
472 473 3.505184 CCCCGCGCACGCTAAAAT 61.505 61.111 13.70 0.00 39.32 1.82
473 474 2.022762 CCCGCGCACGCTAAAATC 59.977 61.111 13.70 0.00 39.32 2.17
474 475 2.349648 CCGCGCACGCTAAAATCG 60.350 61.111 13.70 0.00 39.32 3.34
475 476 3.005794 CGCGCACGCTAAAATCGC 61.006 61.111 13.70 0.00 42.05 4.58
476 477 2.097538 GCGCACGCTAAAATCGCA 59.902 55.556 7.96 0.00 44.50 5.10
477 478 1.297598 GCGCACGCTAAAATCGCAT 60.298 52.632 7.96 0.00 44.50 4.73
478 479 0.861450 GCGCACGCTAAAATCGCATT 60.861 50.000 7.96 0.00 44.50 3.56
479 480 1.534028 CGCACGCTAAAATCGCATTT 58.466 45.000 0.00 0.00 0.00 2.32
480 481 1.910819 CGCACGCTAAAATCGCATTTT 59.089 42.857 10.36 10.36 44.13 1.82
481 482 3.095016 CGCACGCTAAAATCGCATTTTA 58.905 40.909 11.20 11.20 42.13 1.52
482 483 3.062772 CGCACGCTAAAATCGCATTTTAC 60.063 43.478 8.88 6.79 42.13 2.01
483 484 3.849145 GCACGCTAAAATCGCATTTTACA 59.151 39.130 8.88 0.00 42.13 2.41
484 485 4.258860 GCACGCTAAAATCGCATTTTACAC 60.259 41.667 8.88 5.49 42.13 2.90
485 486 4.029625 CACGCTAAAATCGCATTTTACACG 60.030 41.667 18.08 18.08 42.13 4.49
486 487 3.062772 CGCTAAAATCGCATTTTACACGC 60.063 43.478 8.88 9.81 42.13 5.34
487 488 4.095610 GCTAAAATCGCATTTTACACGCT 58.904 39.130 8.88 0.00 42.13 5.07
488 489 4.202358 GCTAAAATCGCATTTTACACGCTC 59.798 41.667 8.88 0.00 42.13 5.03
489 490 4.419522 AAAATCGCATTTTACACGCTCT 57.580 36.364 5.42 0.00 40.44 4.09
490 491 3.658351 AATCGCATTTTACACGCTCTC 57.342 42.857 0.00 0.00 0.00 3.20
491 492 0.989164 TCGCATTTTACACGCTCTCG 59.011 50.000 0.00 0.00 42.43 4.04
492 493 7.307847 AAAATCGCATTTTACACGCTCTCGT 62.308 40.000 5.42 0.00 44.09 4.18
493 494 8.681866 AAAATCGCATTTTACACGCTCTCGTT 62.682 38.462 5.42 0.00 42.32 3.85
516 517 6.486253 TTTTTGCAGTCACTATGCTCTTAG 57.514 37.500 0.00 0.00 44.17 2.18
517 518 5.405935 TTTGCAGTCACTATGCTCTTAGA 57.594 39.130 0.00 0.00 44.17 2.10
518 519 4.377839 TGCAGTCACTATGCTCTTAGAC 57.622 45.455 0.00 0.00 44.17 2.59
519 520 4.019858 TGCAGTCACTATGCTCTTAGACT 58.980 43.478 0.00 0.00 44.17 3.24
520 521 4.464244 TGCAGTCACTATGCTCTTAGACTT 59.536 41.667 0.00 0.00 44.17 3.01
521 522 5.040635 GCAGTCACTATGCTCTTAGACTTC 58.959 45.833 0.00 0.00 40.59 3.01
522 523 5.393569 GCAGTCACTATGCTCTTAGACTTCA 60.394 44.000 0.00 0.00 40.59 3.02
523 524 6.682611 GCAGTCACTATGCTCTTAGACTTCAT 60.683 42.308 0.00 0.00 40.59 2.57
524 525 7.264221 CAGTCACTATGCTCTTAGACTTCATT 58.736 38.462 0.00 0.00 34.39 2.57
525 526 8.409371 CAGTCACTATGCTCTTAGACTTCATTA 58.591 37.037 0.00 0.00 34.39 1.90
526 527 8.410141 AGTCACTATGCTCTTAGACTTCATTAC 58.590 37.037 0.00 0.00 32.88 1.89
527 528 8.410141 GTCACTATGCTCTTAGACTTCATTACT 58.590 37.037 0.00 0.00 0.00 2.24
528 529 8.625651 TCACTATGCTCTTAGACTTCATTACTC 58.374 37.037 0.00 0.00 0.00 2.59
534 535 9.190317 TGCTCTTAGACTTCATTACTCTGAATA 57.810 33.333 0.00 0.00 34.76 1.75
538 539 9.755804 CTTAGACTTCATTACTCTGAATATGCA 57.244 33.333 0.00 0.00 34.76 3.96
657 1616 3.181461 GCTAGCTGTCTCTCTCTCTCTCT 60.181 52.174 7.70 0.00 0.00 3.10
658 1617 3.550437 AGCTGTCTCTCTCTCTCTCTC 57.450 52.381 0.00 0.00 0.00 3.20
659 1618 3.110705 AGCTGTCTCTCTCTCTCTCTCT 58.889 50.000 0.00 0.00 0.00 3.10
660 1619 3.133721 AGCTGTCTCTCTCTCTCTCTCTC 59.866 52.174 0.00 0.00 0.00 3.20
661 1620 3.133721 GCTGTCTCTCTCTCTCTCTCTCT 59.866 52.174 0.00 0.00 0.00 3.10
662 1621 4.739137 GCTGTCTCTCTCTCTCTCTCTCTC 60.739 54.167 0.00 0.00 0.00 3.20
663 1622 4.614475 TGTCTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
731 2652 1.271934 CTCTCTGCGCATAGGCATAGT 59.728 52.381 21.09 0.00 42.99 2.12
946 3019 1.142965 GCAAAGGTTTGGGCGTTGT 59.857 52.632 4.67 0.00 38.57 3.32
1428 3566 1.425267 CGACCACAACAGCGTCAACA 61.425 55.000 0.00 0.00 0.00 3.33
1430 3568 1.131504 GACCACAACAGCGTCAACAAA 59.868 47.619 0.00 0.00 0.00 2.83
1553 3720 2.095212 GCGGGTCAAGAGGTGATTTTTC 60.095 50.000 0.00 0.00 38.90 2.29
1736 3929 2.093500 TCACTCCAGGTCCATCGAATTG 60.093 50.000 0.00 0.00 0.00 2.32
1737 3930 1.909302 ACTCCAGGTCCATCGAATTGT 59.091 47.619 0.00 0.00 0.00 2.71
1738 3931 2.305927 ACTCCAGGTCCATCGAATTGTT 59.694 45.455 0.00 0.00 0.00 2.83
1739 3932 2.939103 CTCCAGGTCCATCGAATTGTTC 59.061 50.000 0.00 0.00 0.00 3.18
1740 3933 2.304470 TCCAGGTCCATCGAATTGTTCA 59.696 45.455 0.00 0.00 0.00 3.18
1741 3934 2.420022 CCAGGTCCATCGAATTGTTCAC 59.580 50.000 0.00 0.00 0.00 3.18
1742 3935 3.073678 CAGGTCCATCGAATTGTTCACA 58.926 45.455 0.00 0.00 0.00 3.58
1743 3936 3.691118 CAGGTCCATCGAATTGTTCACAT 59.309 43.478 0.00 0.00 0.00 3.21
1744 3937 4.156556 CAGGTCCATCGAATTGTTCACATT 59.843 41.667 0.00 0.00 0.00 2.71
1776 3969 2.879103 TCCTCGCCTCCAAAGAAAAT 57.121 45.000 0.00 0.00 0.00 1.82
1784 3977 3.190535 GCCTCCAAAGAAAATAGCGTGAA 59.809 43.478 0.00 0.00 0.00 3.18
1825 4030 1.006102 CCGAGCAGACGAAGGTGTT 60.006 57.895 0.00 0.00 35.09 3.32
1826 4031 0.242825 CCGAGCAGACGAAGGTGTTA 59.757 55.000 0.00 0.00 35.09 2.41
1886 4091 2.270205 CTGCTGACGCTGGGGAAT 59.730 61.111 0.00 0.00 36.97 3.01
1974 4180 1.202770 GCCACCCCTCGCAATTACTAT 60.203 52.381 0.00 0.00 0.00 2.12
1975 4181 2.767505 CCACCCCTCGCAATTACTATC 58.232 52.381 0.00 0.00 0.00 2.08
1978 4187 2.633481 ACCCCTCGCAATTACTATCTCC 59.367 50.000 0.00 0.00 0.00 3.71
2031 4249 3.810310 TCAAAACAATCCACCGCTTTT 57.190 38.095 0.00 0.00 0.00 2.27
2057 4275 0.456312 GACTAACTCTCCGTGCGTGG 60.456 60.000 0.00 0.00 0.00 4.94
2059 4277 0.456221 CTAACTCTCCGTGCGTGGAT 59.544 55.000 0.00 0.00 37.41 3.41
2094 4318 1.117994 CAGCTCATCAGGAGGCACTA 58.882 55.000 0.00 0.00 44.22 2.74
2110 4334 5.524535 AGGCACTAAAGAAGGAGATAGAGT 58.475 41.667 0.00 0.00 36.02 3.24
2147 4374 2.125188 GCAGCAGAGCCTCAGGAC 60.125 66.667 0.00 0.00 0.00 3.85
2149 4376 2.121385 AGCAGAGCCTCAGGACCA 59.879 61.111 0.00 0.00 0.00 4.02
2161 4388 3.012722 GGACCATGGAACCCCCGA 61.013 66.667 21.47 0.00 37.93 5.14
2244 4480 2.184322 GCGCCCTCGTGATTGAGA 59.816 61.111 0.00 0.00 38.28 3.27
2245 4481 1.447838 GCGCCCTCGTGATTGAGAA 60.448 57.895 0.00 0.00 38.28 2.87
2246 4482 0.811616 GCGCCCTCGTGATTGAGAAT 60.812 55.000 0.00 0.00 38.28 2.40
2247 4483 1.656652 CGCCCTCGTGATTGAGAATT 58.343 50.000 0.00 0.00 38.28 2.17
2263 4503 1.111116 AATTCGAGATCCGGCCCGTA 61.111 55.000 0.85 0.00 39.14 4.02
2365 4626 1.271871 TGCATTCTTCGGGGTGTGATT 60.272 47.619 0.00 0.00 0.00 2.57
2379 4653 5.694910 GGGGTGTGATTATGTATGTAACTCG 59.305 44.000 0.00 0.00 0.00 4.18
2414 4688 2.029380 GGTGGGTGGTTGCTTATTTGTC 60.029 50.000 0.00 0.00 0.00 3.18
2424 4698 5.229423 GTTGCTTATTTGTCCATTCTTGCA 58.771 37.500 0.00 0.00 0.00 4.08
2511 4785 2.642154 TTTTGGGCGAAGGTTGTAGA 57.358 45.000 0.00 0.00 0.00 2.59
2575 4852 2.660572 TGCTTGGCTGGTTTTCTTGTA 58.339 42.857 0.00 0.00 0.00 2.41
2637 4919 5.457140 TGTTCGTGCATTACCAGATTTTTC 58.543 37.500 0.00 0.00 0.00 2.29
2659 4943 0.179043 TTGCAGCCGTGACCAAACTA 60.179 50.000 0.00 0.00 0.00 2.24
2713 7722 4.641989 CCTGCCTGCTTTACATTGATAAGT 59.358 41.667 0.00 0.00 0.00 2.24
2827 8475 4.094294 GGATATTAAAACGCAGTGACAGCA 59.906 41.667 0.00 0.00 45.00 4.41
2953 8829 0.842905 TGCAAGTTACCCTGCCCCTA 60.843 55.000 4.86 0.00 0.00 3.53
2992 8874 3.900446 GGCGTACATAGCCGGTATT 57.100 52.632 1.90 0.00 45.58 1.89
3029 8911 1.582502 GTCGGTTCTTGCTTATCGTCG 59.417 52.381 0.00 0.00 0.00 5.12
3081 8978 3.933861 AATCCCTCACCACCAGATTAC 57.066 47.619 0.00 0.00 0.00 1.89
3097 8994 5.277825 CAGATTACTGGATTGAGACTCGTC 58.722 45.833 0.00 0.00 40.14 4.20
3136 9035 3.181474 GCGAGATGGCTAGGTTTTCTACT 60.181 47.826 0.00 0.00 0.00 2.57
3137 9036 4.680975 GCGAGATGGCTAGGTTTTCTACTT 60.681 45.833 0.00 0.00 0.00 2.24
3138 9037 4.806247 CGAGATGGCTAGGTTTTCTACTTG 59.194 45.833 0.00 0.00 0.00 3.16
3139 9038 5.104259 AGATGGCTAGGTTTTCTACTTGG 57.896 43.478 0.00 0.00 0.00 3.61
3140 9039 4.536489 AGATGGCTAGGTTTTCTACTTGGT 59.464 41.667 0.00 0.00 0.00 3.67
3141 9040 4.281898 TGGCTAGGTTTTCTACTTGGTC 57.718 45.455 0.00 0.00 0.00 4.02
3142 9041 3.649023 TGGCTAGGTTTTCTACTTGGTCA 59.351 43.478 0.00 0.00 0.00 4.02
3143 9042 4.254492 GGCTAGGTTTTCTACTTGGTCAG 58.746 47.826 0.00 0.00 0.00 3.51
3144 9043 4.262938 GGCTAGGTTTTCTACTTGGTCAGT 60.263 45.833 0.00 0.00 39.87 3.41
3145 9044 5.046807 GGCTAGGTTTTCTACTTGGTCAGTA 60.047 44.000 0.00 0.00 36.88 2.74
3146 9045 6.351966 GGCTAGGTTTTCTACTTGGTCAGTAT 60.352 42.308 0.00 0.00 37.36 2.12
3147 9046 7.147776 GGCTAGGTTTTCTACTTGGTCAGTATA 60.148 40.741 0.00 0.00 37.36 1.47
3148 9047 8.422566 GCTAGGTTTTCTACTTGGTCAGTATAT 58.577 37.037 0.00 0.00 37.36 0.86
3149 9048 9.751542 CTAGGTTTTCTACTTGGTCAGTATATG 57.248 37.037 0.00 0.00 37.36 1.78
3150 9049 8.147244 AGGTTTTCTACTTGGTCAGTATATGT 57.853 34.615 0.00 0.00 37.36 2.29
3151 9050 8.041323 AGGTTTTCTACTTGGTCAGTATATGTG 58.959 37.037 0.00 0.00 37.36 3.21
3152 9051 7.822822 GGTTTTCTACTTGGTCAGTATATGTGT 59.177 37.037 0.00 0.00 37.36 3.72
3153 9052 9.216117 GTTTTCTACTTGGTCAGTATATGTGTT 57.784 33.333 0.00 0.00 37.36 3.32
3154 9053 8.771920 TTTCTACTTGGTCAGTATATGTGTTG 57.228 34.615 0.00 0.00 37.36 3.33
3155 9054 7.476540 TCTACTTGGTCAGTATATGTGTTGT 57.523 36.000 0.00 0.00 37.36 3.32
3156 9055 7.320399 TCTACTTGGTCAGTATATGTGTTGTG 58.680 38.462 0.00 0.00 37.36 3.33
3157 9056 5.865085 ACTTGGTCAGTATATGTGTTGTGT 58.135 37.500 0.00 0.00 31.97 3.72
3158 9057 6.999950 ACTTGGTCAGTATATGTGTTGTGTA 58.000 36.000 0.00 0.00 31.97 2.90
3159 9058 7.620880 ACTTGGTCAGTATATGTGTTGTGTAT 58.379 34.615 0.00 0.00 31.97 2.29
3160 9059 8.755028 ACTTGGTCAGTATATGTGTTGTGTATA 58.245 33.333 0.00 0.00 31.97 1.47
3161 9060 9.764363 CTTGGTCAGTATATGTGTTGTGTATAT 57.236 33.333 0.00 0.00 0.00 0.86
3163 9062 9.541143 TGGTCAGTATATGTGTTGTGTATATTG 57.459 33.333 0.00 0.00 0.00 1.90
3164 9063 9.542462 GGTCAGTATATGTGTTGTGTATATTGT 57.458 33.333 0.00 0.00 0.00 2.71
3172 9071 7.384439 TGTGTTGTGTATATTGTGTATTGGG 57.616 36.000 0.00 0.00 0.00 4.12
3173 9072 6.127869 TGTGTTGTGTATATTGTGTATTGGGC 60.128 38.462 0.00 0.00 0.00 5.36
3174 9073 5.358442 TGTTGTGTATATTGTGTATTGGGCC 59.642 40.000 0.00 0.00 0.00 5.80
3175 9074 4.465886 TGTGTATATTGTGTATTGGGCCC 58.534 43.478 17.59 17.59 0.00 5.80
3176 9075 4.079730 TGTGTATATTGTGTATTGGGCCCA 60.080 41.667 24.45 24.45 0.00 5.36
3177 9076 4.277423 GTGTATATTGTGTATTGGGCCCAC 59.723 45.833 28.70 14.93 0.00 4.61
3178 9077 2.445682 TATTGTGTATTGGGCCCACC 57.554 50.000 28.70 16.48 40.81 4.61
3179 9078 0.709992 ATTGTGTATTGGGCCCACCT 59.290 50.000 28.70 18.23 41.11 4.00
3180 9079 0.485099 TTGTGTATTGGGCCCACCTT 59.515 50.000 28.70 15.50 41.11 3.50
3181 9080 0.039035 TGTGTATTGGGCCCACCTTC 59.961 55.000 28.70 15.92 41.11 3.46
3182 9081 0.331616 GTGTATTGGGCCCACCTTCT 59.668 55.000 28.70 9.67 41.11 2.85
3183 9082 1.562475 GTGTATTGGGCCCACCTTCTA 59.438 52.381 28.70 9.60 41.11 2.10
3184 9083 2.025699 GTGTATTGGGCCCACCTTCTAA 60.026 50.000 28.70 8.65 41.11 2.10
3185 9084 2.856231 TGTATTGGGCCCACCTTCTAAT 59.144 45.455 28.70 16.56 41.11 1.73
3186 9085 3.270960 TGTATTGGGCCCACCTTCTAATT 59.729 43.478 28.70 3.29 41.11 1.40
3187 9086 2.230130 TTGGGCCCACCTTCTAATTG 57.770 50.000 28.70 0.00 41.11 2.32
3188 9087 1.080638 TGGGCCCACCTTCTAATTGT 58.919 50.000 24.45 0.00 41.11 2.71
3189 9088 1.005450 TGGGCCCACCTTCTAATTGTC 59.995 52.381 24.45 0.00 41.11 3.18
3190 9089 1.685180 GGGCCCACCTTCTAATTGTCC 60.685 57.143 19.95 0.00 35.85 4.02
3191 9090 1.285078 GGCCCACCTTCTAATTGTCCT 59.715 52.381 0.00 0.00 0.00 3.85
3192 9091 2.291605 GGCCCACCTTCTAATTGTCCTT 60.292 50.000 0.00 0.00 0.00 3.36
3193 9092 2.755103 GCCCACCTTCTAATTGTCCTTG 59.245 50.000 0.00 0.00 0.00 3.61
3194 9093 3.814316 GCCCACCTTCTAATTGTCCTTGT 60.814 47.826 0.00 0.00 0.00 3.16
3195 9094 4.566907 GCCCACCTTCTAATTGTCCTTGTA 60.567 45.833 0.00 0.00 0.00 2.41
3196 9095 5.755849 CCCACCTTCTAATTGTCCTTGTAT 58.244 41.667 0.00 0.00 0.00 2.29
3197 9096 6.634039 GCCCACCTTCTAATTGTCCTTGTATA 60.634 42.308 0.00 0.00 0.00 1.47
3198 9097 6.992715 CCCACCTTCTAATTGTCCTTGTATAG 59.007 42.308 0.00 0.00 0.00 1.31
3199 9098 7.365652 CCCACCTTCTAATTGTCCTTGTATAGT 60.366 40.741 0.00 0.00 0.00 2.12
3200 9099 8.047310 CCACCTTCTAATTGTCCTTGTATAGTT 58.953 37.037 0.00 0.00 0.00 2.24
3201 9100 8.883731 CACCTTCTAATTGTCCTTGTATAGTTG 58.116 37.037 0.00 0.00 0.00 3.16
3202 9101 8.822805 ACCTTCTAATTGTCCTTGTATAGTTGA 58.177 33.333 0.00 0.00 0.00 3.18
3203 9102 9.319143 CCTTCTAATTGTCCTTGTATAGTTGAG 57.681 37.037 0.00 0.00 0.00 3.02
3204 9103 9.319143 CTTCTAATTGTCCTTGTATAGTTGAGG 57.681 37.037 0.00 0.00 0.00 3.86
3205 9104 8.375493 TCTAATTGTCCTTGTATAGTTGAGGT 57.625 34.615 0.00 0.00 0.00 3.85
3206 9105 8.475639 TCTAATTGTCCTTGTATAGTTGAGGTC 58.524 37.037 0.00 0.00 0.00 3.85
3207 9106 4.713824 TGTCCTTGTATAGTTGAGGTCG 57.286 45.455 0.00 0.00 0.00 4.79
3208 9107 3.119245 TGTCCTTGTATAGTTGAGGTCGC 60.119 47.826 0.00 0.00 0.00 5.19
3209 9108 2.098607 TCCTTGTATAGTTGAGGTCGCG 59.901 50.000 0.00 0.00 0.00 5.87
3210 9109 2.460918 CTTGTATAGTTGAGGTCGCGG 58.539 52.381 6.13 0.00 0.00 6.46
3211 9110 1.466856 TGTATAGTTGAGGTCGCGGT 58.533 50.000 6.13 0.00 0.00 5.68
3212 9111 1.402968 TGTATAGTTGAGGTCGCGGTC 59.597 52.381 6.13 1.16 0.00 4.79
3213 9112 1.027357 TATAGTTGAGGTCGCGGTCC 58.973 55.000 6.13 9.87 0.00 4.46
3214 9113 0.968901 ATAGTTGAGGTCGCGGTCCA 60.969 55.000 19.66 5.82 0.00 4.02
3215 9114 0.968901 TAGTTGAGGTCGCGGTCCAT 60.969 55.000 19.66 7.99 0.00 3.41
3216 9115 1.810030 GTTGAGGTCGCGGTCCATC 60.810 63.158 19.66 14.67 0.00 3.51
3217 9116 3.350909 TTGAGGTCGCGGTCCATCG 62.351 63.158 19.66 0.00 0.00 3.84
3218 9117 3.823330 GAGGTCGCGGTCCATCGT 61.823 66.667 19.66 3.01 0.00 3.73
3219 9118 3.352338 GAGGTCGCGGTCCATCGTT 62.352 63.158 19.66 2.69 0.00 3.85
3220 9119 3.186047 GGTCGCGGTCCATCGTTG 61.186 66.667 6.13 0.00 0.00 4.10
3221 9120 2.431942 GTCGCGGTCCATCGTTGT 60.432 61.111 6.13 0.00 0.00 3.32
3222 9121 1.153978 GTCGCGGTCCATCGTTGTA 60.154 57.895 6.13 0.00 0.00 2.41
3223 9122 1.153978 TCGCGGTCCATCGTTGTAC 60.154 57.895 6.13 0.00 0.00 2.90
3224 9123 1.444724 CGCGGTCCATCGTTGTACA 60.445 57.895 0.00 0.00 0.00 2.90
3225 9124 0.804544 CGCGGTCCATCGTTGTACAT 60.805 55.000 0.00 0.00 0.00 2.29
3226 9125 0.928229 GCGGTCCATCGTTGTACATC 59.072 55.000 0.00 0.00 0.00 3.06
3227 9126 1.737696 GCGGTCCATCGTTGTACATCA 60.738 52.381 0.00 0.00 0.00 3.07
3228 9127 2.821546 CGGTCCATCGTTGTACATCAT 58.178 47.619 0.00 0.00 0.00 2.45
3229 9128 3.797524 GCGGTCCATCGTTGTACATCATA 60.798 47.826 0.00 0.00 0.00 2.15
3230 9129 4.556233 CGGTCCATCGTTGTACATCATAT 58.444 43.478 0.00 0.00 0.00 1.78
3231 9130 5.705902 CGGTCCATCGTTGTACATCATATA 58.294 41.667 0.00 0.00 0.00 0.86
3232 9131 6.330278 CGGTCCATCGTTGTACATCATATAT 58.670 40.000 0.00 0.00 0.00 0.86
3233 9132 7.477494 CGGTCCATCGTTGTACATCATATATA 58.523 38.462 0.00 0.00 0.00 0.86
3234 9133 7.431376 CGGTCCATCGTTGTACATCATATATAC 59.569 40.741 0.00 0.00 0.00 1.47
3235 9134 7.431376 GGTCCATCGTTGTACATCATATATACG 59.569 40.741 0.00 0.80 0.00 3.06
3236 9135 7.966753 GTCCATCGTTGTACATCATATATACGT 59.033 37.037 11.04 0.00 0.00 3.57
3237 9136 7.966204 TCCATCGTTGTACATCATATATACGTG 59.034 37.037 11.04 9.01 0.00 4.49
3238 9137 7.253651 CCATCGTTGTACATCATATATACGTGC 60.254 40.741 11.04 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.929707 CCCCCGCGGCTTATCACC 62.930 72.222 22.85 0.00 0.00 4.02
28 29 2.044620 ATGGAACCTCCCTCCCCC 59.955 66.667 0.00 0.00 35.03 5.40
29 30 1.004891 AGATGGAACCTCCCTCCCC 59.995 63.158 0.00 0.00 35.03 4.81
30 31 1.057275 GGAGATGGAACCTCCCTCCC 61.057 65.000 6.70 0.48 43.37 4.30
31 32 2.534038 GGAGATGGAACCTCCCTCC 58.466 63.158 0.00 0.00 43.37 4.30
36 37 2.107141 CGCGGGAGATGGAACCTC 59.893 66.667 0.00 0.00 0.00 3.85
37 38 2.683933 ACGCGGGAGATGGAACCT 60.684 61.111 12.47 0.00 0.00 3.50
38 39 2.202892 GACGCGGGAGATGGAACC 60.203 66.667 12.47 0.00 0.00 3.62
39 40 2.582498 CGACGCGGGAGATGGAAC 60.582 66.667 12.47 0.00 0.00 3.62
40 41 3.060020 GACGACGCGGGAGATGGAA 62.060 63.158 12.47 0.00 0.00 3.53
41 42 3.515286 GACGACGCGGGAGATGGA 61.515 66.667 12.47 0.00 0.00 3.41
42 43 3.822192 TGACGACGCGGGAGATGG 61.822 66.667 12.47 0.00 0.00 3.51
43 44 2.579787 GTGACGACGCGGGAGATG 60.580 66.667 12.47 0.00 0.00 2.90
44 45 3.823330 GGTGACGACGCGGGAGAT 61.823 66.667 12.47 0.00 0.00 2.75
46 47 4.477975 GAGGTGACGACGCGGGAG 62.478 72.222 12.47 3.25 0.00 4.30
61 62 0.107654 GGGACATGAACTTCCCGGAG 60.108 60.000 0.73 0.00 42.35 4.63
62 63 1.988015 GGGACATGAACTTCCCGGA 59.012 57.895 0.73 0.00 42.35 5.14
63 64 4.637771 GGGACATGAACTTCCCGG 57.362 61.111 0.00 0.00 42.35 5.73
66 67 0.676782 CCGGTGGGACATGAACTTCC 60.677 60.000 0.00 0.00 44.52 3.46
67 68 2.854522 CCGGTGGGACATGAACTTC 58.145 57.895 0.00 0.00 44.52 3.01
68 69 1.131303 TCCCGGTGGGACATGAACTT 61.131 55.000 0.00 0.00 46.17 2.66
69 70 1.537889 TCCCGGTGGGACATGAACT 60.538 57.895 0.00 0.00 46.17 3.01
70 71 3.074281 TCCCGGTGGGACATGAAC 58.926 61.111 0.00 0.00 46.17 3.18
130 131 3.685214 CTTCGAGACCGCCCACGAG 62.685 68.421 0.00 0.00 43.93 4.18
131 132 3.744719 CTTCGAGACCGCCCACGA 61.745 66.667 0.00 0.00 43.93 4.35
132 133 4.796231 CCTTCGAGACCGCCCACG 62.796 72.222 0.00 0.00 39.67 4.94
133 134 3.692406 ACCTTCGAGACCGCCCAC 61.692 66.667 0.00 0.00 35.37 4.61
134 135 3.691342 CACCTTCGAGACCGCCCA 61.691 66.667 0.00 0.00 35.37 5.36
138 139 3.744719 TCGGCACCTTCGAGACCG 61.745 66.667 7.17 7.17 45.15 4.79
145 146 4.821589 CTCGGCCTCGGCACCTTC 62.822 72.222 10.51 0.00 44.11 3.46
169 170 1.084370 CAGAGATTTGGTCCGGCGAC 61.084 60.000 9.30 4.52 38.38 5.19
170 171 1.218047 CAGAGATTTGGTCCGGCGA 59.782 57.895 9.30 0.00 0.00 5.54
171 172 2.464459 GCAGAGATTTGGTCCGGCG 61.464 63.158 0.00 0.00 0.00 6.46
172 173 2.464459 CGCAGAGATTTGGTCCGGC 61.464 63.158 0.00 0.00 0.00 6.13
173 174 1.815421 CCGCAGAGATTTGGTCCGG 60.815 63.158 0.00 0.00 0.00 5.14
174 175 0.807667 CTCCGCAGAGATTTGGTCCG 60.808 60.000 0.00 0.00 43.39 4.79
175 176 0.537188 TCTCCGCAGAGATTTGGTCC 59.463 55.000 0.00 0.00 44.42 4.46
240 241 4.778415 CTCGCCTCGTCACCACCG 62.778 72.222 0.00 0.00 0.00 4.94
241 242 2.430382 TTTCTCGCCTCGTCACCACC 62.430 60.000 0.00 0.00 0.00 4.61
242 243 0.599204 TTTTCTCGCCTCGTCACCAC 60.599 55.000 0.00 0.00 0.00 4.16
243 244 0.599204 GTTTTCTCGCCTCGTCACCA 60.599 55.000 0.00 0.00 0.00 4.17
244 245 1.615107 CGTTTTCTCGCCTCGTCACC 61.615 60.000 0.00 0.00 0.00 4.02
245 246 1.615107 CCGTTTTCTCGCCTCGTCAC 61.615 60.000 0.00 0.00 0.00 3.67
246 247 1.372499 CCGTTTTCTCGCCTCGTCA 60.372 57.895 0.00 0.00 0.00 4.35
247 248 2.727684 GCCGTTTTCTCGCCTCGTC 61.728 63.158 0.00 0.00 0.00 4.20
248 249 2.737376 GCCGTTTTCTCGCCTCGT 60.737 61.111 0.00 0.00 0.00 4.18
249 250 2.730672 CTGCCGTTTTCTCGCCTCG 61.731 63.158 0.00 0.00 0.00 4.63
250 251 1.355066 CTCTGCCGTTTTCTCGCCTC 61.355 60.000 0.00 0.00 0.00 4.70
251 252 1.374758 CTCTGCCGTTTTCTCGCCT 60.375 57.895 0.00 0.00 0.00 5.52
252 253 1.355066 CTCTCTGCCGTTTTCTCGCC 61.355 60.000 0.00 0.00 0.00 5.54
253 254 0.388649 TCTCTCTGCCGTTTTCTCGC 60.389 55.000 0.00 0.00 0.00 5.03
254 255 1.068194 ACTCTCTCTGCCGTTTTCTCG 60.068 52.381 0.00 0.00 0.00 4.04
255 256 2.029828 TCACTCTCTCTGCCGTTTTCTC 60.030 50.000 0.00 0.00 0.00 2.87
256 257 1.964223 TCACTCTCTCTGCCGTTTTCT 59.036 47.619 0.00 0.00 0.00 2.52
257 258 2.440539 TCACTCTCTCTGCCGTTTTC 57.559 50.000 0.00 0.00 0.00 2.29
258 259 2.910688 TTCACTCTCTCTGCCGTTTT 57.089 45.000 0.00 0.00 0.00 2.43
259 260 2.548920 CCTTTCACTCTCTCTGCCGTTT 60.549 50.000 0.00 0.00 0.00 3.60
260 261 1.001406 CCTTTCACTCTCTCTGCCGTT 59.999 52.381 0.00 0.00 0.00 4.44
261 262 0.605589 CCTTTCACTCTCTCTGCCGT 59.394 55.000 0.00 0.00 0.00 5.68
262 263 0.891373 TCCTTTCACTCTCTCTGCCG 59.109 55.000 0.00 0.00 0.00 5.69
263 264 2.166254 CTCTCCTTTCACTCTCTCTGCC 59.834 54.545 0.00 0.00 0.00 4.85
264 265 3.088532 TCTCTCCTTTCACTCTCTCTGC 58.911 50.000 0.00 0.00 0.00 4.26
265 266 3.129287 GCTCTCTCCTTTCACTCTCTCTG 59.871 52.174 0.00 0.00 0.00 3.35
266 267 3.356290 GCTCTCTCCTTTCACTCTCTCT 58.644 50.000 0.00 0.00 0.00 3.10
267 268 2.097466 CGCTCTCTCCTTTCACTCTCTC 59.903 54.545 0.00 0.00 0.00 3.20
268 269 2.091541 CGCTCTCTCCTTTCACTCTCT 58.908 52.381 0.00 0.00 0.00 3.10
269 270 1.134175 CCGCTCTCTCCTTTCACTCTC 59.866 57.143 0.00 0.00 0.00 3.20
270 271 1.181786 CCGCTCTCTCCTTTCACTCT 58.818 55.000 0.00 0.00 0.00 3.24
271 272 0.459411 GCCGCTCTCTCCTTTCACTC 60.459 60.000 0.00 0.00 0.00 3.51
272 273 1.188219 TGCCGCTCTCTCCTTTCACT 61.188 55.000 0.00 0.00 0.00 3.41
273 274 1.016653 GTGCCGCTCTCTCCTTTCAC 61.017 60.000 0.00 0.00 0.00 3.18
274 275 1.293498 GTGCCGCTCTCTCCTTTCA 59.707 57.895 0.00 0.00 0.00 2.69
275 276 0.739112 CTGTGCCGCTCTCTCCTTTC 60.739 60.000 0.00 0.00 0.00 2.62
276 277 1.294780 CTGTGCCGCTCTCTCCTTT 59.705 57.895 0.00 0.00 0.00 3.11
277 278 2.654079 CCTGTGCCGCTCTCTCCTT 61.654 63.158 0.00 0.00 0.00 3.36
278 279 3.073735 CCTGTGCCGCTCTCTCCT 61.074 66.667 0.00 0.00 0.00 3.69
279 280 4.154347 CCCTGTGCCGCTCTCTCC 62.154 72.222 0.00 0.00 0.00 3.71
280 281 4.828925 GCCCTGTGCCGCTCTCTC 62.829 72.222 0.00 0.00 0.00 3.20
291 292 2.217038 ACCTCATCACACGCCCTGT 61.217 57.895 0.00 0.00 0.00 4.00
292 293 1.742880 CACCTCATCACACGCCCTG 60.743 63.158 0.00 0.00 0.00 4.45
293 294 2.665000 CACCTCATCACACGCCCT 59.335 61.111 0.00 0.00 0.00 5.19
294 295 2.436646 CCACCTCATCACACGCCC 60.437 66.667 0.00 0.00 0.00 6.13
295 296 1.448540 CTCCACCTCATCACACGCC 60.449 63.158 0.00 0.00 0.00 5.68
296 297 1.016130 CACTCCACCTCATCACACGC 61.016 60.000 0.00 0.00 0.00 5.34
297 298 1.016130 GCACTCCACCTCATCACACG 61.016 60.000 0.00 0.00 0.00 4.49
298 299 1.016130 CGCACTCCACCTCATCACAC 61.016 60.000 0.00 0.00 0.00 3.82
299 300 1.184970 TCGCACTCCACCTCATCACA 61.185 55.000 0.00 0.00 0.00 3.58
300 301 0.176680 ATCGCACTCCACCTCATCAC 59.823 55.000 0.00 0.00 0.00 3.06
301 302 0.176449 CATCGCACTCCACCTCATCA 59.824 55.000 0.00 0.00 0.00 3.07
302 303 0.531532 CCATCGCACTCCACCTCATC 60.532 60.000 0.00 0.00 0.00 2.92
303 304 1.524002 CCATCGCACTCCACCTCAT 59.476 57.895 0.00 0.00 0.00 2.90
304 305 2.659063 CCCATCGCACTCCACCTCA 61.659 63.158 0.00 0.00 0.00 3.86
305 306 2.187946 CCCATCGCACTCCACCTC 59.812 66.667 0.00 0.00 0.00 3.85
306 307 2.284625 TCCCATCGCACTCCACCT 60.285 61.111 0.00 0.00 0.00 4.00
307 308 2.187946 CTCCCATCGCACTCCACC 59.812 66.667 0.00 0.00 0.00 4.61
308 309 2.187946 CCTCCCATCGCACTCCAC 59.812 66.667 0.00 0.00 0.00 4.02
309 310 3.083349 CCCTCCCATCGCACTCCA 61.083 66.667 0.00 0.00 0.00 3.86
310 311 4.554036 GCCCTCCCATCGCACTCC 62.554 72.222 0.00 0.00 0.00 3.85
311 312 3.785859 TGCCCTCCCATCGCACTC 61.786 66.667 0.00 0.00 0.00 3.51
314 315 4.100084 CAGTGCCCTCCCATCGCA 62.100 66.667 0.00 0.00 0.00 5.10
316 317 2.898920 AATGCAGTGCCCTCCCATCG 62.899 60.000 13.72 0.00 0.00 3.84
317 318 0.685458 AAATGCAGTGCCCTCCCATC 60.685 55.000 13.72 0.00 0.00 3.51
318 319 0.252375 AAAATGCAGTGCCCTCCCAT 60.252 50.000 13.72 0.00 0.00 4.00
319 320 0.407528 TAAAATGCAGTGCCCTCCCA 59.592 50.000 13.72 0.00 0.00 4.37
320 321 1.780503 ATAAAATGCAGTGCCCTCCC 58.219 50.000 13.72 0.00 0.00 4.30
321 322 2.887152 CCTATAAAATGCAGTGCCCTCC 59.113 50.000 13.72 0.00 0.00 4.30
322 323 2.294512 GCCTATAAAATGCAGTGCCCTC 59.705 50.000 13.72 0.00 0.00 4.30
323 324 2.310538 GCCTATAAAATGCAGTGCCCT 58.689 47.619 13.72 0.00 0.00 5.19
324 325 1.001378 CGCCTATAAAATGCAGTGCCC 60.001 52.381 13.72 0.00 0.00 5.36
325 326 1.676006 ACGCCTATAAAATGCAGTGCC 59.324 47.619 13.72 0.00 0.00 5.01
326 327 2.719798 CACGCCTATAAAATGCAGTGC 58.280 47.619 8.58 8.58 0.00 4.40
327 328 2.541588 GGCACGCCTATAAAATGCAGTG 60.542 50.000 0.00 0.00 38.05 3.66
328 329 1.676006 GGCACGCCTATAAAATGCAGT 59.324 47.619 0.00 0.00 38.05 4.40
329 330 2.405892 GGCACGCCTATAAAATGCAG 57.594 50.000 0.00 0.00 38.05 4.41
354 355 0.097674 GTGCTAGATTTGGCGTGCAG 59.902 55.000 0.00 0.00 32.70 4.41
355 356 1.634757 CGTGCTAGATTTGGCGTGCA 61.635 55.000 0.00 0.00 32.70 4.57
356 357 1.060937 CGTGCTAGATTTGGCGTGC 59.939 57.895 0.00 0.00 32.70 5.34
357 358 1.060937 GCGTGCTAGATTTGGCGTG 59.939 57.895 0.00 0.00 32.70 5.34
358 359 2.452813 CGCGTGCTAGATTTGGCGT 61.453 57.895 0.00 0.00 38.90 5.68
359 360 2.321060 CGCGTGCTAGATTTGGCG 59.679 61.111 0.00 0.00 37.56 5.69
360 361 2.023320 GCGCGTGCTAGATTTGGC 59.977 61.111 15.02 0.00 38.39 4.52
361 362 2.709475 GGCGCGTGCTAGATTTGG 59.291 61.111 21.89 0.00 42.25 3.28
362 363 2.709475 GGGCGCGTGCTAGATTTG 59.291 61.111 21.89 0.00 42.25 2.32
363 364 2.890474 CGGGCGCGTGCTAGATTT 60.890 61.111 21.89 0.00 42.25 2.17
364 365 4.891727 CCGGGCGCGTGCTAGATT 62.892 66.667 21.89 0.00 42.25 2.40
375 376 4.419939 GGAAAAAGCAGCCGGGCG 62.420 66.667 14.39 9.89 39.27 6.13
376 377 4.069232 GGGAAAAAGCAGCCGGGC 62.069 66.667 12.11 12.11 0.00 6.13
377 378 3.747976 CGGGAAAAAGCAGCCGGG 61.748 66.667 2.18 0.00 0.00 5.73
378 379 4.419939 GCGGGAAAAAGCAGCCGG 62.420 66.667 0.00 0.00 0.00 6.13
379 380 4.759096 CGCGGGAAAAAGCAGCCG 62.759 66.667 0.00 0.00 0.00 5.52
396 397 3.395470 ATGGGAAACGATTGCGCGC 62.395 57.895 27.26 27.26 42.48 6.86
397 398 1.583451 CATGGGAAACGATTGCGCG 60.583 57.895 0.00 0.00 42.48 6.86
398 399 1.873572 GCATGGGAAACGATTGCGC 60.874 57.895 0.00 0.00 42.48 6.09
399 400 1.583451 CGCATGGGAAACGATTGCG 60.583 57.895 3.11 1.01 44.79 4.85
400 401 1.873572 GCGCATGGGAAACGATTGC 60.874 57.895 14.90 0.00 0.00 3.56
401 402 1.226660 GGCGCATGGGAAACGATTG 60.227 57.895 14.90 0.00 0.00 2.67
402 403 1.378514 AGGCGCATGGGAAACGATT 60.379 52.632 14.90 0.00 0.00 3.34
403 404 2.114670 CAGGCGCATGGGAAACGAT 61.115 57.895 15.54 0.00 0.00 3.73
404 405 2.745884 CAGGCGCATGGGAAACGA 60.746 61.111 15.54 0.00 0.00 3.85
405 406 2.745884 TCAGGCGCATGGGAAACG 60.746 61.111 23.25 0.00 0.00 3.60
406 407 1.244019 AACTCAGGCGCATGGGAAAC 61.244 55.000 31.04 0.00 0.00 2.78
407 408 0.539438 AAACTCAGGCGCATGGGAAA 60.539 50.000 31.04 4.73 0.00 3.13
408 409 0.539438 AAAACTCAGGCGCATGGGAA 60.539 50.000 31.04 5.16 0.00 3.97
409 410 0.539438 AAAAACTCAGGCGCATGGGA 60.539 50.000 31.04 6.03 0.00 4.37
410 411 0.109132 GAAAAACTCAGGCGCATGGG 60.109 55.000 22.25 22.25 0.00 4.00
411 412 0.454957 CGAAAAACTCAGGCGCATGG 60.455 55.000 23.25 15.11 0.00 3.66
412 413 1.067199 GCGAAAAACTCAGGCGCATG 61.067 55.000 17.42 17.42 46.19 4.06
413 414 1.210155 GCGAAAAACTCAGGCGCAT 59.790 52.632 10.83 0.00 46.19 4.73
414 415 2.637025 GCGAAAAACTCAGGCGCA 59.363 55.556 10.83 0.00 46.19 6.09
415 416 2.126850 GGCGAAAAACTCAGGCGC 60.127 61.111 0.00 0.00 46.20 6.53
416 417 1.497722 GAGGCGAAAAACTCAGGCG 59.502 57.895 0.00 0.00 33.95 5.52
417 418 1.876664 GGAGGCGAAAAACTCAGGC 59.123 57.895 0.00 0.00 35.45 4.85
418 419 1.912371 GCGGAGGCGAAAAACTCAGG 61.912 60.000 0.00 0.00 35.45 3.86
419 420 0.951040 AGCGGAGGCGAAAAACTCAG 60.951 55.000 0.00 0.00 46.35 3.35
420 421 1.070786 AGCGGAGGCGAAAAACTCA 59.929 52.632 0.00 0.00 46.35 3.41
421 422 0.949105 TCAGCGGAGGCGAAAAACTC 60.949 55.000 0.00 0.00 46.35 3.01
422 423 0.534203 TTCAGCGGAGGCGAAAAACT 60.534 50.000 0.00 0.00 46.35 2.66
423 424 0.110192 CTTCAGCGGAGGCGAAAAAC 60.110 55.000 0.00 0.00 46.35 2.43
424 425 1.852067 GCTTCAGCGGAGGCGAAAAA 61.852 55.000 5.03 0.00 46.35 1.94
425 426 2.325082 GCTTCAGCGGAGGCGAAAA 61.325 57.895 5.03 0.00 46.35 2.29
426 427 2.742372 GCTTCAGCGGAGGCGAAA 60.742 61.111 5.03 0.00 46.35 3.46
436 437 3.099574 GGTTTTGCGCGCTTCAGC 61.100 61.111 33.29 20.13 37.78 4.26
437 438 2.010817 GTGGTTTTGCGCGCTTCAG 61.011 57.895 33.29 0.00 0.00 3.02
438 439 2.025441 GTGGTTTTGCGCGCTTCA 59.975 55.556 33.29 18.77 0.00 3.02
439 440 2.729491 GGTGGTTTTGCGCGCTTC 60.729 61.111 33.29 18.21 0.00 3.86
440 441 4.279043 GGGTGGTTTTGCGCGCTT 62.279 61.111 33.29 0.00 0.00 4.68
447 448 4.639171 GTGCGCGGGGTGGTTTTG 62.639 66.667 8.83 0.00 0.00 2.44
459 460 6.532293 GTAAAATGCGATTTTAGCGTGCGC 62.532 45.833 8.67 8.67 43.21 6.09
460 461 1.534028 AAATGCGATTTTAGCGTGCG 58.466 45.000 0.00 0.00 37.44 5.34
461 462 3.849145 TGTAAAATGCGATTTTAGCGTGC 59.151 39.130 11.76 0.00 43.21 5.34
462 463 4.029625 CGTGTAAAATGCGATTTTAGCGTG 60.030 41.667 11.76 3.40 43.21 5.34
463 464 4.085884 CGTGTAAAATGCGATTTTAGCGT 58.914 39.130 11.76 0.00 43.21 5.07
464 465 3.062772 GCGTGTAAAATGCGATTTTAGCG 60.063 43.478 19.32 19.32 43.21 4.26
465 466 4.095610 AGCGTGTAAAATGCGATTTTAGC 58.904 39.130 11.76 11.69 46.14 3.09
466 467 5.560148 AGAGCGTGTAAAATGCGATTTTAG 58.440 37.500 11.76 5.30 46.14 1.85
467 468 5.539582 AGAGCGTGTAAAATGCGATTTTA 57.460 34.783 8.88 8.88 46.14 1.52
468 469 4.403453 GAGAGCGTGTAAAATGCGATTTT 58.597 39.130 10.36 10.36 46.14 1.82
469 470 3.483574 CGAGAGCGTGTAAAATGCGATTT 60.484 43.478 0.00 0.00 46.14 2.17
470 471 2.029244 CGAGAGCGTGTAAAATGCGATT 59.971 45.455 0.00 0.00 46.14 3.34
471 472 1.588404 CGAGAGCGTGTAAAATGCGAT 59.412 47.619 0.00 0.00 46.14 4.58
472 473 0.989164 CGAGAGCGTGTAAAATGCGA 59.011 50.000 0.00 0.00 46.14 5.10
473 474 3.474823 CGAGAGCGTGTAAAATGCG 57.525 52.632 0.00 0.00 46.14 4.73
493 494 6.147821 GTCTAAGAGCATAGTGACTGCAAAAA 59.852 38.462 0.00 0.00 42.15 1.94
494 495 5.639506 GTCTAAGAGCATAGTGACTGCAAAA 59.360 40.000 0.00 0.00 42.15 2.44
495 496 5.047021 AGTCTAAGAGCATAGTGACTGCAAA 60.047 40.000 0.00 0.00 42.15 3.68
496 497 4.464244 AGTCTAAGAGCATAGTGACTGCAA 59.536 41.667 0.00 0.00 42.15 4.08
497 498 4.019858 AGTCTAAGAGCATAGTGACTGCA 58.980 43.478 0.00 0.00 42.15 4.41
498 499 4.647424 AGTCTAAGAGCATAGTGACTGC 57.353 45.455 0.00 0.00 39.97 4.40
499 500 6.201226 TGAAGTCTAAGAGCATAGTGACTG 57.799 41.667 0.00 0.00 35.34 3.51
500 501 7.416964 AATGAAGTCTAAGAGCATAGTGACT 57.583 36.000 0.00 0.00 36.49 3.41
501 502 8.410141 AGTAATGAAGTCTAAGAGCATAGTGAC 58.590 37.037 0.00 0.00 0.00 3.67
502 503 8.526667 AGTAATGAAGTCTAAGAGCATAGTGA 57.473 34.615 0.00 0.00 0.00 3.41
503 504 8.629158 AGAGTAATGAAGTCTAAGAGCATAGTG 58.371 37.037 0.00 0.00 36.03 2.74
504 505 8.629158 CAGAGTAATGAAGTCTAAGAGCATAGT 58.371 37.037 0.00 0.00 35.57 2.12
505 506 8.845227 TCAGAGTAATGAAGTCTAAGAGCATAG 58.155 37.037 0.00 0.00 35.57 2.23
506 507 8.753497 TCAGAGTAATGAAGTCTAAGAGCATA 57.247 34.615 0.00 0.00 35.57 3.14
507 508 7.652524 TCAGAGTAATGAAGTCTAAGAGCAT 57.347 36.000 0.00 0.00 35.57 3.79
508 509 7.468141 TTCAGAGTAATGAAGTCTAAGAGCA 57.532 36.000 0.00 0.00 35.57 4.26
511 512 9.973450 GCATATTCAGAGTAATGAAGTCTAAGA 57.027 33.333 0.00 0.00 42.20 2.10
512 513 9.755804 TGCATATTCAGAGTAATGAAGTCTAAG 57.244 33.333 0.00 0.00 42.20 2.18
513 514 9.755804 CTGCATATTCAGAGTAATGAAGTCTAA 57.244 33.333 0.00 0.00 42.20 2.10
514 515 9.136323 TCTGCATATTCAGAGTAATGAAGTCTA 57.864 33.333 0.48 0.00 42.20 2.59
515 516 8.016301 TCTGCATATTCAGAGTAATGAAGTCT 57.984 34.615 0.48 0.00 42.20 3.24
527 528 0.250038 GCGCCCTCTGCATATTCAGA 60.250 55.000 4.94 4.94 41.33 3.27
528 529 1.563435 CGCGCCCTCTGCATATTCAG 61.563 60.000 0.00 0.00 41.33 3.02
570 571 3.503839 TGGGTTCTTTGGGGCGGT 61.504 61.111 0.00 0.00 0.00 5.68
657 1616 2.443632 ACATGACGAGGGGATAGAGAGA 59.556 50.000 0.00 0.00 0.00 3.10
658 1617 2.556189 CACATGACGAGGGGATAGAGAG 59.444 54.545 0.00 0.00 0.00 3.20
659 1618 2.174854 TCACATGACGAGGGGATAGAGA 59.825 50.000 0.00 0.00 0.00 3.10
660 1619 2.294791 GTCACATGACGAGGGGATAGAG 59.705 54.545 0.00 0.00 35.12 2.43
661 1620 2.307768 GTCACATGACGAGGGGATAGA 58.692 52.381 0.00 0.00 35.12 1.98
662 1621 1.341531 GGTCACATGACGAGGGGATAG 59.658 57.143 0.00 0.00 45.65 2.08
663 1622 1.063190 AGGTCACATGACGAGGGGATA 60.063 52.381 0.00 0.00 45.65 2.59
689 1672 8.078060 AGAGAGAAATAGGAAGGAAGAAAGAG 57.922 38.462 0.00 0.00 0.00 2.85
693 1676 6.127196 GCAGAGAGAGAAATAGGAAGGAAGAA 60.127 42.308 0.00 0.00 0.00 2.52
697 1680 3.634448 CGCAGAGAGAGAAATAGGAAGGA 59.366 47.826 0.00 0.00 0.00 3.36
731 2652 3.567164 AGAGAGGAACGACTTGAAACGTA 59.433 43.478 0.00 0.00 41.87 3.57
966 3051 1.029947 GCCCGAATCAATCAACCGGT 61.030 55.000 0.00 0.00 38.61 5.28
1301 3400 3.276091 CGGTCAAACTGGTGCGCA 61.276 61.111 5.66 5.66 0.00 6.09
1428 3566 2.234143 GCCCTTGTCTTGCTTCTCTTT 58.766 47.619 0.00 0.00 0.00 2.52
1430 3568 0.321122 CGCCCTTGTCTTGCTTCTCT 60.321 55.000 0.00 0.00 0.00 3.10
1562 3731 4.084066 TGTGCATTGTCGTAATTCTGTGAC 60.084 41.667 0.00 0.00 0.00 3.67
1565 3739 4.314961 TCTGTGCATTGTCGTAATTCTGT 58.685 39.130 0.00 0.00 0.00 3.41
1622 3804 3.872511 TGCAATGATCCTGCGATTTTT 57.127 38.095 11.14 0.00 42.97 1.94
1717 3901 1.909302 ACAATTCGATGGACCTGGAGT 59.091 47.619 0.00 0.00 0.00 3.85
1736 3929 4.853743 GGAAATCAAGCTCGAAATGTGAAC 59.146 41.667 0.00 0.00 0.00 3.18
1737 3930 4.761739 AGGAAATCAAGCTCGAAATGTGAA 59.238 37.500 0.00 0.00 0.00 3.18
1738 3931 4.326826 AGGAAATCAAGCTCGAAATGTGA 58.673 39.130 0.00 0.00 0.00 3.58
1739 3932 4.656041 GAGGAAATCAAGCTCGAAATGTG 58.344 43.478 0.00 0.00 0.00 3.21
1740 3933 3.372206 CGAGGAAATCAAGCTCGAAATGT 59.628 43.478 0.00 0.00 39.56 2.71
1741 3934 3.786818 GCGAGGAAATCAAGCTCGAAATG 60.787 47.826 0.00 0.00 39.56 2.32
1742 3935 2.352960 GCGAGGAAATCAAGCTCGAAAT 59.647 45.455 0.00 0.00 39.56 2.17
1743 3936 1.732259 GCGAGGAAATCAAGCTCGAAA 59.268 47.619 0.00 0.00 39.56 3.46
1744 3937 1.359848 GCGAGGAAATCAAGCTCGAA 58.640 50.000 0.00 0.00 39.56 3.71
1776 3969 5.647658 AGATTCCATGTCAAAATTCACGCTA 59.352 36.000 0.00 0.00 0.00 4.26
1784 3977 4.159135 GGAGCACAGATTCCATGTCAAAAT 59.841 41.667 0.00 0.00 33.55 1.82
1818 4023 1.613255 CGGGGACAATGCTAACACCTT 60.613 52.381 0.00 0.00 0.00 3.50
1886 4091 2.265739 CGCTGCTTGAGGTGGCTA 59.734 61.111 0.00 0.00 0.00 3.93
1974 4180 2.370519 TGGTCGGTGAGAAATTTGGAGA 59.629 45.455 0.00 0.00 0.00 3.71
1975 4181 2.484264 GTGGTCGGTGAGAAATTTGGAG 59.516 50.000 0.00 0.00 0.00 3.86
1978 4187 2.504367 AGGTGGTCGGTGAGAAATTTG 58.496 47.619 0.00 0.00 0.00 2.32
2031 4249 3.390135 CACGGAGAGTTAGTCAGCAAAA 58.610 45.455 0.00 0.00 0.00 2.44
2049 4267 0.371301 CACAGATTCATCCACGCACG 59.629 55.000 0.00 0.00 0.00 5.34
2057 4275 1.326852 CTGAGCACGCACAGATTCATC 59.673 52.381 10.51 0.00 36.90 2.92
2059 4277 1.293963 GCTGAGCACGCACAGATTCA 61.294 55.000 18.83 0.00 36.90 2.57
2094 4318 4.357325 TCAGCCACTCTATCTCCTTCTTT 58.643 43.478 0.00 0.00 0.00 2.52
2110 4334 0.835971 TGGTAGACTTGCCTCAGCCA 60.836 55.000 0.00 0.00 38.69 4.75
2147 4374 2.272146 CTGTCGGGGGTTCCATGG 59.728 66.667 4.97 4.97 34.36 3.66
2149 4376 2.656069 CGTCTGTCGGGGGTTCCAT 61.656 63.158 0.00 0.00 35.71 3.41
2240 4476 0.389391 GGCCGGATCTCGAATTCTCA 59.611 55.000 5.05 0.00 42.43 3.27
2241 4477 0.319986 GGGCCGGATCTCGAATTCTC 60.320 60.000 5.05 0.00 42.43 2.87
2242 4478 1.749033 GGGCCGGATCTCGAATTCT 59.251 57.895 5.05 0.00 42.43 2.40
2243 4479 1.664965 CGGGCCGGATCTCGAATTC 60.665 63.158 20.56 0.00 42.43 2.17
2244 4480 1.111116 TACGGGCCGGATCTCGAATT 61.111 55.000 31.78 7.28 42.43 2.17
2245 4481 1.524863 CTACGGGCCGGATCTCGAAT 61.525 60.000 31.78 8.11 42.43 3.34
2246 4482 2.124193 TACGGGCCGGATCTCGAA 60.124 61.111 31.78 1.58 42.43 3.71
2247 4483 2.593725 CTACGGGCCGGATCTCGA 60.594 66.667 31.78 4.96 42.43 4.04
2263 4503 1.073923 CACTTGGTTGTCCTAAGGCCT 59.926 52.381 0.00 0.00 34.23 5.19
2365 4626 8.780846 AATGAACAAACCGAGTTACATACATA 57.219 30.769 0.00 0.00 0.00 2.29
2379 4653 0.601057 CCCACCGGAATGAACAAACC 59.399 55.000 9.46 0.00 0.00 3.27
2414 4688 2.943690 CAGACAGAGGATGCAAGAATGG 59.056 50.000 0.00 0.00 0.00 3.16
2424 4698 1.006998 AGGAGCAGACAGACAGAGGAT 59.993 52.381 0.00 0.00 0.00 3.24
2511 4785 8.960591 CAACCAATCTGAGTTACAAATCCTTAT 58.039 33.333 0.00 0.00 0.00 1.73
2575 4852 6.938030 ACATTGCATTTGATTGACCAGAAATT 59.062 30.769 4.32 0.00 0.00 1.82
2637 4919 1.165907 TTTGGTCACGGCTGCAAGAG 61.166 55.000 0.50 0.00 34.07 2.85
2713 7722 6.342111 TGCATGTGACACCGTAATAAATCTA 58.658 36.000 2.45 0.00 0.00 1.98
2827 8475 2.461637 CCTTCCCCTCCCCCTCTT 59.538 66.667 0.00 0.00 0.00 2.85
2858 8724 0.186630 TGCATGCCTATCCCTTGCAT 59.813 50.000 16.68 0.00 46.09 3.96
2953 8829 3.902112 CCCAACCCTGGCAGTGGT 61.902 66.667 18.41 18.41 41.99 4.16
2992 8874 2.672651 CCATGCCAACACAGCCGA 60.673 61.111 0.00 0.00 0.00 5.54
3081 8978 3.601443 AAAGGACGAGTCTCAATCCAG 57.399 47.619 18.22 0.00 33.33 3.86
3113 9012 1.834263 AGAAAACCTAGCCATCTCGCT 59.166 47.619 0.00 0.00 43.09 4.93
3115 9014 4.657436 AGTAGAAAACCTAGCCATCTCG 57.343 45.455 0.00 0.00 0.00 4.04
3137 9036 9.541143 CAATATACACAACACATATACTGACCA 57.459 33.333 0.00 0.00 0.00 4.02
3138 9037 9.542462 ACAATATACACAACACATATACTGACC 57.458 33.333 0.00 0.00 0.00 4.02
3146 9045 9.114952 CCCAATACACAATATACACAACACATA 57.885 33.333 0.00 0.00 0.00 2.29
3147 9046 7.416213 GCCCAATACACAATATACACAACACAT 60.416 37.037 0.00 0.00 0.00 3.21
3148 9047 6.127869 GCCCAATACACAATATACACAACACA 60.128 38.462 0.00 0.00 0.00 3.72
3149 9048 6.262601 GCCCAATACACAATATACACAACAC 58.737 40.000 0.00 0.00 0.00 3.32
3150 9049 5.358442 GGCCCAATACACAATATACACAACA 59.642 40.000 0.00 0.00 0.00 3.33
3151 9050 5.221165 GGGCCCAATACACAATATACACAAC 60.221 44.000 19.95 0.00 0.00 3.32
3152 9051 4.890581 GGGCCCAATACACAATATACACAA 59.109 41.667 19.95 0.00 0.00 3.33
3153 9052 4.079730 TGGGCCCAATACACAATATACACA 60.080 41.667 26.33 0.00 0.00 3.72
3154 9053 4.277423 GTGGGCCCAATACACAATATACAC 59.723 45.833 30.64 3.67 35.30 2.90
3155 9054 4.465886 GTGGGCCCAATACACAATATACA 58.534 43.478 30.64 0.00 35.30 2.29
3156 9055 3.824443 GGTGGGCCCAATACACAATATAC 59.176 47.826 30.64 9.09 36.87 1.47
3157 9056 3.724738 AGGTGGGCCCAATACACAATATA 59.275 43.478 30.64 0.00 36.87 0.86
3158 9057 2.517980 AGGTGGGCCCAATACACAATAT 59.482 45.455 30.64 0.00 36.87 1.28
3159 9058 1.926665 AGGTGGGCCCAATACACAATA 59.073 47.619 30.64 0.00 36.87 1.90
3160 9059 0.709992 AGGTGGGCCCAATACACAAT 59.290 50.000 30.64 2.99 36.87 2.71
3161 9060 0.485099 AAGGTGGGCCCAATACACAA 59.515 50.000 30.64 0.00 36.87 3.33
3162 9061 0.039035 GAAGGTGGGCCCAATACACA 59.961 55.000 30.64 0.00 36.87 3.72
3163 9062 0.331616 AGAAGGTGGGCCCAATACAC 59.668 55.000 30.64 14.31 34.66 2.90
3164 9063 1.974028 TAGAAGGTGGGCCCAATACA 58.026 50.000 30.64 7.04 34.66 2.29
3165 9064 3.595190 ATTAGAAGGTGGGCCCAATAC 57.405 47.619 30.64 20.31 34.66 1.89
3166 9065 3.270960 ACAATTAGAAGGTGGGCCCAATA 59.729 43.478 30.64 11.90 34.66 1.90
3167 9066 2.044353 ACAATTAGAAGGTGGGCCCAAT 59.956 45.455 30.64 16.65 34.66 3.16
3168 9067 1.431243 ACAATTAGAAGGTGGGCCCAA 59.569 47.619 30.64 9.89 34.66 4.12
3169 9068 1.005450 GACAATTAGAAGGTGGGCCCA 59.995 52.381 24.45 24.45 34.66 5.36
3170 9069 1.685180 GGACAATTAGAAGGTGGGCCC 60.685 57.143 17.59 17.59 34.57 5.80
3171 9070 1.285078 AGGACAATTAGAAGGTGGGCC 59.715 52.381 0.00 0.00 0.00 5.80
3172 9071 2.755103 CAAGGACAATTAGAAGGTGGGC 59.245 50.000 0.00 0.00 0.00 5.36
3173 9072 4.034285 ACAAGGACAATTAGAAGGTGGG 57.966 45.455 0.00 0.00 0.00 4.61
3174 9073 7.565680 ACTATACAAGGACAATTAGAAGGTGG 58.434 38.462 0.00 0.00 0.00 4.61
3175 9074 8.883731 CAACTATACAAGGACAATTAGAAGGTG 58.116 37.037 0.00 0.00 0.00 4.00
3176 9075 8.822805 TCAACTATACAAGGACAATTAGAAGGT 58.177 33.333 0.00 0.00 0.00 3.50
3177 9076 9.319143 CTCAACTATACAAGGACAATTAGAAGG 57.681 37.037 0.00 0.00 0.00 3.46
3178 9077 9.319143 CCTCAACTATACAAGGACAATTAGAAG 57.681 37.037 0.00 0.00 0.00 2.85
3179 9078 8.822805 ACCTCAACTATACAAGGACAATTAGAA 58.177 33.333 0.00 0.00 32.99 2.10
3180 9079 8.375493 ACCTCAACTATACAAGGACAATTAGA 57.625 34.615 0.00 0.00 32.99 2.10
3181 9080 7.435488 CGACCTCAACTATACAAGGACAATTAG 59.565 40.741 0.00 0.00 32.99 1.73
3182 9081 7.262772 CGACCTCAACTATACAAGGACAATTA 58.737 38.462 0.00 0.00 32.99 1.40
3183 9082 6.106673 CGACCTCAACTATACAAGGACAATT 58.893 40.000 0.00 0.00 32.99 2.32
3184 9083 5.661458 CGACCTCAACTATACAAGGACAAT 58.339 41.667 0.00 0.00 32.99 2.71
3185 9084 4.619863 GCGACCTCAACTATACAAGGACAA 60.620 45.833 0.00 0.00 32.99 3.18
3186 9085 3.119245 GCGACCTCAACTATACAAGGACA 60.119 47.826 0.00 0.00 32.99 4.02
3187 9086 3.445857 GCGACCTCAACTATACAAGGAC 58.554 50.000 0.00 0.00 32.99 3.85
3188 9087 2.098607 CGCGACCTCAACTATACAAGGA 59.901 50.000 0.00 0.00 32.99 3.36
3189 9088 2.460918 CGCGACCTCAACTATACAAGG 58.539 52.381 0.00 0.00 34.94 3.61
3190 9089 2.159282 ACCGCGACCTCAACTATACAAG 60.159 50.000 8.23 0.00 0.00 3.16
3191 9090 1.820519 ACCGCGACCTCAACTATACAA 59.179 47.619 8.23 0.00 0.00 2.41
3192 9091 1.402968 GACCGCGACCTCAACTATACA 59.597 52.381 8.23 0.00 0.00 2.29
3193 9092 1.268948 GGACCGCGACCTCAACTATAC 60.269 57.143 8.23 0.00 0.00 1.47
3194 9093 1.027357 GGACCGCGACCTCAACTATA 58.973 55.000 8.23 0.00 0.00 1.31
3195 9094 0.968901 TGGACCGCGACCTCAACTAT 60.969 55.000 8.23 0.00 0.00 2.12
3196 9095 0.968901 ATGGACCGCGACCTCAACTA 60.969 55.000 8.23 0.00 0.00 2.24
3197 9096 2.227089 GATGGACCGCGACCTCAACT 62.227 60.000 8.23 0.00 0.00 3.16
3198 9097 1.810030 GATGGACCGCGACCTCAAC 60.810 63.158 8.23 0.00 0.00 3.18
3199 9098 2.577059 GATGGACCGCGACCTCAA 59.423 61.111 8.23 0.00 0.00 3.02
3200 9099 3.822192 CGATGGACCGCGACCTCA 61.822 66.667 8.23 0.03 0.00 3.86
3201 9100 3.352338 AACGATGGACCGCGACCTC 62.352 63.158 8.23 9.23 0.00 3.85
3202 9101 3.379445 AACGATGGACCGCGACCT 61.379 61.111 8.23 0.85 0.00 3.85
3203 9102 2.546645 TACAACGATGGACCGCGACC 62.547 60.000 8.23 11.83 0.00 4.79
3204 9103 1.153978 TACAACGATGGACCGCGAC 60.154 57.895 8.23 0.17 0.00 5.19
3205 9104 1.153978 GTACAACGATGGACCGCGA 60.154 57.895 8.23 0.00 33.98 5.87
3206 9105 0.804544 ATGTACAACGATGGACCGCG 60.805 55.000 5.49 0.00 39.90 6.46
3207 9106 0.928229 GATGTACAACGATGGACCGC 59.072 55.000 5.49 0.00 39.90 5.68
3208 9107 2.287393 TGATGTACAACGATGGACCG 57.713 50.000 5.49 0.00 39.90 4.79
3209 9108 7.431376 CGTATATATGATGTACAACGATGGACC 59.569 40.741 5.49 0.00 39.90 4.46
3210 9109 7.966753 ACGTATATATGATGTACAACGATGGAC 59.033 37.037 16.74 0.14 41.13 4.02
3211 9110 7.966204 CACGTATATATGATGTACAACGATGGA 59.034 37.037 16.74 0.00 33.65 3.41
3212 9111 7.253651 GCACGTATATATGATGTACAACGATGG 60.254 40.741 16.74 8.49 33.65 3.51
3213 9112 7.600907 GCACGTATATATGATGTACAACGATG 58.399 38.462 16.74 12.28 33.65 3.84
3214 9113 7.736031 GCACGTATATATGATGTACAACGAT 57.264 36.000 16.74 7.33 33.65 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.