Multiple sequence alignment - TraesCS3B01G167300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G167300 chr3B 100.000 6174 0 0 1 6174 167661276 167667449 0.000000e+00 11402.0
1 TraesCS3B01G167300 chr3B 97.308 260 6 1 494 752 452641557 452641298 2.040000e-119 440.0
2 TraesCS3B01G167300 chr3B 96.721 244 7 1 510 752 672026977 672026734 7.450000e-109 405.0
3 TraesCS3B01G167300 chr3B 91.579 95 7 1 5441 5534 421670491 421670585 5.020000e-26 130.0
4 TraesCS3B01G167300 chr3A 91.947 3949 226 38 1502 5396 108883650 108879740 0.000000e+00 5446.0
5 TraesCS3B01G167300 chr3A 88.889 513 31 11 753 1251 108884309 108883809 5.290000e-170 608.0
6 TraesCS3B01G167300 chr3A 83.486 327 46 6 3380 3699 648183426 648183751 1.300000e-76 298.0
7 TraesCS3B01G167300 chr3A 93.333 45 3 0 5408 5452 108879656 108879612 3.990000e-07 67.6
8 TraesCS3B01G167300 chr3D 90.024 2917 173 37 1502 4347 113520134 113517265 0.000000e+00 3666.0
9 TraesCS3B01G167300 chr3D 97.422 892 18 3 4355 5243 113514468 113513579 0.000000e+00 1515.0
10 TraesCS3B01G167300 chr3D 93.429 624 25 9 755 1372 113520806 113520193 0.000000e+00 911.0
11 TraesCS3B01G167300 chr3D 89.297 654 46 11 5534 6165 113513264 113512613 0.000000e+00 798.0
12 TraesCS3B01G167300 chr3D 98.585 212 3 0 5241 5452 113513476 113513265 5.840000e-100 375.0
13 TraesCS3B01G167300 chr3D 87.500 112 7 5 5432 5537 472726670 472726560 8.400000e-24 122.0
14 TraesCS3B01G167300 chr4A 93.158 760 49 3 1 758 680325392 680326150 0.000000e+00 1112.0
15 TraesCS3B01G167300 chr5D 97.095 482 13 1 269 749 175992216 175992697 0.000000e+00 811.0
16 TraesCS3B01G167300 chr5D 97.037 270 8 0 1 270 175991773 175992042 7.300000e-124 455.0
17 TraesCS3B01G167300 chr5D 90.000 100 8 2 5437 5534 338307210 338307309 1.810000e-25 128.0
18 TraesCS3B01G167300 chr1B 96.212 264 8 2 494 756 537191561 537191823 1.230000e-116 431.0
19 TraesCS3B01G167300 chr1B 95.094 265 11 2 494 757 362067290 362067027 3.440000e-112 416.0
20 TraesCS3B01G167300 chr1B 84.400 250 34 4 3326 3571 14940076 14940324 2.220000e-59 241.0
21 TraesCS3B01G167300 chr5B 94.615 260 12 2 494 752 42090259 42090517 9.640000e-108 401.0
22 TraesCS3B01G167300 chr7B 94.841 252 11 2 510 759 109418410 109418661 5.800000e-105 392.0
23 TraesCS3B01G167300 chr4D 89.080 174 17 2 3458 3629 301804826 301804999 1.350000e-51 215.0
24 TraesCS3B01G167300 chr2D 90.654 107 7 3 5437 5540 613469011 613469117 8.350000e-29 139.0
25 TraesCS3B01G167300 chr7D 93.407 91 5 1 5445 5534 561960232 561960142 3.880000e-27 134.0
26 TraesCS3B01G167300 chr6A 80.402 199 19 9 564 759 22438068 22437887 3.880000e-27 134.0
27 TraesCS3B01G167300 chr6A 92.391 92 6 1 5450 5540 418954085 418953994 5.020000e-26 130.0
28 TraesCS3B01G167300 chr6D 92.473 93 6 1 5443 5534 149721757 149721665 1.400000e-26 132.0
29 TraesCS3B01G167300 chr5A 92.473 93 5 2 5451 5542 285846639 285846730 1.400000e-26 132.0
30 TraesCS3B01G167300 chr2A 91.000 100 6 3 5440 5538 71560843 71560746 1.400000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G167300 chr3B 167661276 167667449 6173 False 11402.000000 11402 100.000000 1 6174 1 chr3B.!!$F1 6173
1 TraesCS3B01G167300 chr3A 108879612 108884309 4697 True 2040.533333 5446 91.389667 753 5452 3 chr3A.!!$R1 4699
2 TraesCS3B01G167300 chr3D 113512613 113520806 8193 True 1453.000000 3666 93.751400 755 6165 5 chr3D.!!$R2 5410
3 TraesCS3B01G167300 chr4A 680325392 680326150 758 False 1112.000000 1112 93.158000 1 758 1 chr4A.!!$F1 757
4 TraesCS3B01G167300 chr5D 175991773 175992697 924 False 633.000000 811 97.066000 1 749 2 chr5D.!!$F2 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
980 1171 0.708802 TCTTCTACCCCCTTCGTCCT 59.291 55.000 0.00 0.0 0.00 3.85 F
1668 1864 0.105964 AGCAGTGCTACACCGTGAAA 59.894 50.000 18.11 0.0 36.99 2.69 F
1796 1993 0.171455 AGAGTGATTGGAGCGACGAC 59.829 55.000 0.00 0.0 0.00 4.34 F
2764 2989 0.670546 AACCTTGTCGTGGATCGCAG 60.671 55.000 0.00 0.0 39.67 5.18 F
3886 4122 1.070577 CGCAGTGTCTTGAAAGTTCGG 60.071 52.381 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2368 0.606604 ACCGTTACTCCACATTCGCT 59.393 50.000 0.0 0.0 0.00 4.93 R
3140 3367 1.745087 CGCAGCCCACAGATAAAATGT 59.255 47.619 0.0 0.0 0.00 2.71 R
3638 3866 3.865745 CAGAAATAACAGTACCCGAGCAG 59.134 47.826 0.0 0.0 0.00 4.24 R
4072 4344 1.871408 GCACCTGACATAGATGCTCCG 60.871 57.143 0.0 0.0 33.44 4.63 R
5729 8973 0.324614 TCGTGGTGATGATTGCCTGT 59.675 50.000 0.0 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.956640 AGACTGAATATCAAGAGAAAACAGATT 57.043 29.630 0.00 0.00 0.00 2.40
150 152 3.242867 AGATGCCTGGAAGATATTCGGA 58.757 45.455 0.00 0.00 34.07 4.55
210 212 1.760086 CAGATCTGGACGCTCCCCT 60.760 63.158 15.38 0.00 35.03 4.79
282 459 3.225940 AGAAACAAGCTTTCCTTCAGGG 58.774 45.455 0.00 0.00 35.41 4.45
496 673 1.016653 GGGCGCTGAAGTCAAGAGAC 61.017 60.000 7.64 0.00 45.31 3.36
527 704 4.280789 TCCTACATTGGTATCCTCCTGT 57.719 45.455 0.00 0.00 0.00 4.00
583 760 5.105554 TGAGGTCTCAGACTTCTTATTCTGC 60.106 44.000 17.24 0.00 39.04 4.26
634 811 0.749818 TGGCGCAGTTTGGTCTGAAA 60.750 50.000 10.83 0.00 37.61 2.69
640 817 2.213499 CAGTTTGGTCTGAAAGCGTCT 58.787 47.619 0.00 0.00 37.61 4.18
666 843 2.601240 TTCACCATTTGGGCAGATGA 57.399 45.000 0.96 0.00 42.05 2.92
794 973 1.006086 TCCACGCATAGCAAATGTCG 58.994 50.000 11.42 11.42 0.00 4.35
980 1171 0.708802 TCTTCTACCCCCTTCGTCCT 59.291 55.000 0.00 0.00 0.00 3.85
1221 1413 3.691118 TCGTAGAGCTAGTTTTTCGCCTA 59.309 43.478 0.00 0.00 0.00 3.93
1251 1443 1.450905 GCCGTATTCATCGAAGCGTAC 59.549 52.381 0.00 0.00 0.00 3.67
1252 1444 2.723209 CCGTATTCATCGAAGCGTACA 58.277 47.619 0.00 0.00 0.00 2.90
1253 1445 3.110358 CCGTATTCATCGAAGCGTACAA 58.890 45.455 0.00 0.00 0.00 2.41
1254 1446 3.061403 CCGTATTCATCGAAGCGTACAAC 60.061 47.826 0.00 0.00 0.00 3.32
1255 1447 3.789756 CGTATTCATCGAAGCGTACAACT 59.210 43.478 0.00 0.00 0.00 3.16
1256 1448 4.086227 CGTATTCATCGAAGCGTACAACTC 60.086 45.833 0.00 0.00 0.00 3.01
1257 1449 2.273370 TCATCGAAGCGTACAACTCC 57.727 50.000 0.00 0.00 0.00 3.85
1258 1450 1.816835 TCATCGAAGCGTACAACTCCT 59.183 47.619 0.00 0.00 0.00 3.69
1259 1451 3.011818 TCATCGAAGCGTACAACTCCTA 58.988 45.455 0.00 0.00 0.00 2.94
1260 1452 2.907910 TCGAAGCGTACAACTCCTAC 57.092 50.000 0.00 0.00 0.00 3.18
1261 1453 1.470098 TCGAAGCGTACAACTCCTACC 59.530 52.381 0.00 0.00 0.00 3.18
1268 1460 3.001736 GCGTACAACTCCTACCTACTACG 59.998 52.174 0.00 0.00 0.00 3.51
1291 1483 1.634702 GTGGCGACAAGTGATCTCTC 58.365 55.000 0.00 0.00 46.06 3.20
1296 1488 2.541794 GCGACAAGTGATCTCTCGCATA 60.542 50.000 19.01 0.00 43.33 3.14
1304 1496 2.689983 TGATCTCTCGCATACTTGAGCA 59.310 45.455 0.00 0.00 32.20 4.26
1312 1504 2.537529 CGCATACTTGAGCAAATCCACG 60.538 50.000 0.00 0.00 0.00 4.94
1331 1523 3.127548 CACGAGCTGCCATTTTATTCAGT 59.872 43.478 0.00 0.00 0.00 3.41
1332 1524 3.127548 ACGAGCTGCCATTTTATTCAGTG 59.872 43.478 0.00 0.00 0.00 3.66
1334 1526 4.666237 GAGCTGCCATTTTATTCAGTGTC 58.334 43.478 0.00 0.00 0.00 3.67
1339 1531 6.194796 TGCCATTTTATTCAGTGTCTTAGC 57.805 37.500 0.00 0.00 0.00 3.09
1342 1534 6.709643 CCATTTTATTCAGTGTCTTAGCTCG 58.290 40.000 0.00 0.00 0.00 5.03
1354 1546 2.168521 TCTTAGCTCGAAATGGTCAGGG 59.831 50.000 0.00 0.00 0.00 4.45
1355 1547 1.568504 TAGCTCGAAATGGTCAGGGT 58.431 50.000 0.00 0.00 0.00 4.34
1367 1563 1.683629 GGTCAGGGTGTTGGTTGTTGA 60.684 52.381 0.00 0.00 0.00 3.18
1372 1568 3.888930 CAGGGTGTTGGTTGTTGAAGTAT 59.111 43.478 0.00 0.00 0.00 2.12
1373 1569 4.023193 CAGGGTGTTGGTTGTTGAAGTATC 60.023 45.833 0.00 0.00 0.00 2.24
1374 1570 3.058501 GGGTGTTGGTTGTTGAAGTATCG 60.059 47.826 0.00 0.00 0.00 2.92
1375 1571 3.562557 GGTGTTGGTTGTTGAAGTATCGT 59.437 43.478 0.00 0.00 0.00 3.73
1376 1572 4.523813 GTGTTGGTTGTTGAAGTATCGTG 58.476 43.478 0.00 0.00 0.00 4.35
1377 1573 4.034742 GTGTTGGTTGTTGAAGTATCGTGT 59.965 41.667 0.00 0.00 0.00 4.49
1378 1574 4.034626 TGTTGGTTGTTGAAGTATCGTGTG 59.965 41.667 0.00 0.00 0.00 3.82
1379 1575 2.546368 TGGTTGTTGAAGTATCGTGTGC 59.454 45.455 0.00 0.00 0.00 4.57
1380 1576 2.546368 GGTTGTTGAAGTATCGTGTGCA 59.454 45.455 0.00 0.00 0.00 4.57
1381 1577 3.363970 GGTTGTTGAAGTATCGTGTGCAG 60.364 47.826 0.00 0.00 0.00 4.41
1382 1578 1.798223 TGTTGAAGTATCGTGTGCAGC 59.202 47.619 0.00 0.00 0.00 5.25
1383 1579 2.069273 GTTGAAGTATCGTGTGCAGCT 58.931 47.619 0.00 0.00 0.00 4.24
1384 1580 2.455674 TGAAGTATCGTGTGCAGCTT 57.544 45.000 0.00 0.00 0.00 3.74
1385 1581 2.337583 TGAAGTATCGTGTGCAGCTTC 58.662 47.619 0.00 0.00 34.61 3.86
1386 1582 2.288763 TGAAGTATCGTGTGCAGCTTCA 60.289 45.455 0.00 0.00 39.63 3.02
1387 1583 2.001812 AGTATCGTGTGCAGCTTCAG 57.998 50.000 0.00 0.00 0.00 3.02
1388 1584 1.002366 GTATCGTGTGCAGCTTCAGG 58.998 55.000 0.00 0.00 0.00 3.86
1389 1585 0.108186 TATCGTGTGCAGCTTCAGGG 60.108 55.000 0.00 0.00 0.00 4.45
1390 1586 1.830587 ATCGTGTGCAGCTTCAGGGA 61.831 55.000 0.00 0.00 0.00 4.20
1391 1587 1.376424 CGTGTGCAGCTTCAGGGAT 60.376 57.895 0.00 0.00 0.00 3.85
1392 1588 0.957395 CGTGTGCAGCTTCAGGGATT 60.957 55.000 0.00 0.00 0.00 3.01
1393 1589 1.251251 GTGTGCAGCTTCAGGGATTT 58.749 50.000 0.00 0.00 0.00 2.17
1394 1590 1.615392 GTGTGCAGCTTCAGGGATTTT 59.385 47.619 0.00 0.00 0.00 1.82
1395 1591 2.819608 GTGTGCAGCTTCAGGGATTTTA 59.180 45.455 0.00 0.00 0.00 1.52
1396 1592 3.084039 TGTGCAGCTTCAGGGATTTTAG 58.916 45.455 0.00 0.00 0.00 1.85
1412 1608 0.670162 TTAGGGCGGTAGTCGTATGC 59.330 55.000 0.00 0.00 41.72 3.14
1413 1609 0.179009 TAGGGCGGTAGTCGTATGCT 60.179 55.000 0.00 0.00 41.72 3.79
1414 1610 0.179009 AGGGCGGTAGTCGTATGCTA 60.179 55.000 0.00 0.00 41.72 3.49
1424 1620 6.401903 CGGTAGTCGTATGCTACTAATACTGG 60.402 46.154 12.98 0.00 38.92 4.00
1427 1623 5.826737 AGTCGTATGCTACTAATACTGGTGT 59.173 40.000 0.00 0.00 0.00 4.16
1441 1637 1.603802 CTGGTGTGCGTTTCAGTTCAT 59.396 47.619 0.00 0.00 0.00 2.57
1443 1639 2.805671 TGGTGTGCGTTTCAGTTCATAG 59.194 45.455 0.00 0.00 0.00 2.23
1445 1641 3.250040 GGTGTGCGTTTCAGTTCATAGTT 59.750 43.478 0.00 0.00 0.00 2.24
1446 1642 4.455124 GTGTGCGTTTCAGTTCATAGTTC 58.545 43.478 0.00 0.00 0.00 3.01
1447 1643 4.025229 GTGTGCGTTTCAGTTCATAGTTCA 60.025 41.667 0.00 0.00 0.00 3.18
1449 1645 5.065346 TGTGCGTTTCAGTTCATAGTTCAAA 59.935 36.000 0.00 0.00 0.00 2.69
1450 1646 5.395486 GTGCGTTTCAGTTCATAGTTCAAAC 59.605 40.000 0.00 0.00 0.00 2.93
1451 1647 5.295787 TGCGTTTCAGTTCATAGTTCAAACT 59.704 36.000 0.46 0.46 42.91 2.66
1452 1648 6.480651 TGCGTTTCAGTTCATAGTTCAAACTA 59.519 34.615 5.15 5.15 44.84 2.24
1453 1649 7.011576 TGCGTTTCAGTTCATAGTTCAAACTAA 59.988 33.333 6.70 0.00 44.03 2.24
1454 1650 8.015658 GCGTTTCAGTTCATAGTTCAAACTAAT 58.984 33.333 6.70 0.00 44.03 1.73
1468 1664 9.772973 AGTTCAAACTAATACATGTCACTACAA 57.227 29.630 0.00 0.00 36.96 2.41
1478 1674 8.997621 ATACATGTCACTACAATTTTAGTCGT 57.002 30.769 0.00 0.00 39.58 4.34
1480 1676 8.997621 ACATGTCACTACAATTTTAGTCGTAT 57.002 30.769 1.17 0.00 39.58 3.06
1516 1712 8.052005 CGTGTAACTACGGTGGAACTGATCTA 62.052 46.154 0.00 0.00 39.82 1.98
1517 1713 9.426010 CGTGTAACTACGGTGGAACTGATCTAA 62.426 44.444 0.00 0.00 39.82 2.10
1549 1745 1.130054 TTCTGCAGGAGACCCAGCTT 61.130 55.000 15.13 0.00 44.40 3.74
1598 1794 1.466950 GGCGTCGTTCCATTCAAATCA 59.533 47.619 0.00 0.00 0.00 2.57
1663 1859 2.616960 TGAAATAGCAGTGCTACACCG 58.383 47.619 26.70 0.00 44.24 4.94
1664 1860 2.028476 TGAAATAGCAGTGCTACACCGT 60.028 45.455 26.70 8.20 44.24 4.83
1668 1864 0.105964 AGCAGTGCTACACCGTGAAA 59.894 50.000 18.11 0.00 36.99 2.69
1796 1993 0.171455 AGAGTGATTGGAGCGACGAC 59.829 55.000 0.00 0.00 0.00 4.34
1811 2008 1.788886 GACGACGAGGTTGTGTTAACC 59.211 52.381 0.00 0.62 40.58 2.85
1874 2071 2.927856 TTCAAGGCGGCAGAGGGA 60.928 61.111 13.08 0.00 0.00 4.20
1980 2192 7.884816 TCACAAGTGTAGCTAATTCAAGTAC 57.115 36.000 0.00 0.00 0.00 2.73
2150 2363 8.801882 TTTTCCAGGAATAATACACACTTAGG 57.198 34.615 1.58 0.00 0.00 2.69
2152 2365 7.120923 TCCAGGAATAATACACACTTAGGTC 57.879 40.000 0.00 0.00 0.00 3.85
2154 2367 7.402071 TCCAGGAATAATACACACTTAGGTCTT 59.598 37.037 0.00 0.00 0.00 3.01
2155 2368 8.701895 CCAGGAATAATACACACTTAGGTCTTA 58.298 37.037 0.00 0.00 0.00 2.10
2156 2369 9.751542 CAGGAATAATACACACTTAGGTCTTAG 57.248 37.037 0.00 0.00 0.00 2.18
2162 2375 4.495422 ACACACTTAGGTCTTAGCGAATG 58.505 43.478 0.00 0.00 0.00 2.67
2171 2384 3.864003 GGTCTTAGCGAATGTGGAGTAAC 59.136 47.826 0.00 0.00 0.00 2.50
2178 2391 3.619929 GCGAATGTGGAGTAACGGTAATT 59.380 43.478 0.00 0.00 0.00 1.40
2270 2488 4.582656 TCATGGTTAACTGAACACAAAGGG 59.417 41.667 5.42 0.00 40.09 3.95
2272 2490 5.113446 TGGTTAACTGAACACAAAGGGTA 57.887 39.130 5.42 0.00 40.09 3.69
2429 2654 2.388310 TGTTTGTCGACTGGTGTTCA 57.612 45.000 17.92 3.91 0.00 3.18
2669 2894 2.290367 TGCAAGAAGACATGTTGGTTCG 59.710 45.455 0.00 0.00 33.06 3.95
2735 2960 4.634012 TGCAGTAGTTGGGTTACTTGAT 57.366 40.909 0.00 0.00 0.00 2.57
2764 2989 0.670546 AACCTTGTCGTGGATCGCAG 60.671 55.000 0.00 0.00 39.67 5.18
2772 2997 2.535984 GTCGTGGATCGCAGTCATAAAG 59.464 50.000 0.00 0.00 39.67 1.85
2839 3064 6.204852 TCTCAAATTATATGATGGGGTGCT 57.795 37.500 0.00 0.00 0.00 4.40
3003 3228 3.326588 TGCCTTGAAGCTAGGTCAGTTTA 59.673 43.478 2.99 0.00 35.13 2.01
3070 3295 5.728351 TTTCGAGTTGGTGTTCTTAACAG 57.272 39.130 0.00 0.00 43.10 3.16
3071 3296 4.395959 TCGAGTTGGTGTTCTTAACAGT 57.604 40.909 0.00 0.00 43.10 3.55
3072 3297 4.761975 TCGAGTTGGTGTTCTTAACAGTT 58.238 39.130 0.00 0.00 43.10 3.16
3073 3298 5.904941 TCGAGTTGGTGTTCTTAACAGTTA 58.095 37.500 0.00 0.00 43.10 2.24
3074 3299 6.339730 TCGAGTTGGTGTTCTTAACAGTTAA 58.660 36.000 5.61 5.61 43.10 2.01
3110 3335 9.710900 CAAAATCTTTCTTAATTGCCTAAAGGT 57.289 29.630 0.00 0.00 37.57 3.50
3124 3351 5.061179 GCCTAAAGGTTTGTCAGAGTACAA 58.939 41.667 0.00 0.00 35.85 2.41
3140 3367 5.487488 AGAGTACAACCCAAGGATCATACAA 59.513 40.000 0.00 0.00 0.00 2.41
3207 3435 7.752239 TCTTAGTGCGTACTTACACAACTAATC 59.248 37.037 12.53 0.00 39.30 1.75
3212 3440 5.636543 GCGTACTTACACAACTAATCTTGGT 59.363 40.000 0.00 0.00 0.00 3.67
3234 3462 4.619437 TTTTGAACTCACGTTGGTAACC 57.381 40.909 0.00 0.00 32.39 2.85
3309 3537 9.886132 TTATACTTTGAAGATGTCTAAGTTCCC 57.114 33.333 8.15 0.00 46.15 3.97
3385 3613 9.770097 ATCACACATTACAAGGAACAGATATAG 57.230 33.333 0.00 0.00 0.00 1.31
3436 3664 5.920840 TCACTGTCTCAACTTTACTGATTCG 59.079 40.000 0.00 0.00 0.00 3.34
3638 3866 1.424493 CTGTTGCCGCTCTTCCGATC 61.424 60.000 0.00 0.00 0.00 3.69
3663 3893 2.568062 TCGGGTACTGTTATTTCTGCCA 59.432 45.455 0.00 0.00 35.30 4.92
3699 3929 5.875224 TCTCAAAGTTGTAATCCCACATCA 58.125 37.500 0.00 0.00 0.00 3.07
3837 4073 5.698741 TCTTCTGGAGCTTTTCATGGATA 57.301 39.130 0.00 0.00 0.00 2.59
3877 4113 1.571460 GGTTCAGCGCAGTGTCTTG 59.429 57.895 11.47 0.00 0.00 3.02
3884 4120 1.599542 AGCGCAGTGTCTTGAAAGTTC 59.400 47.619 11.47 0.00 0.00 3.01
3886 4122 1.070577 CGCAGTGTCTTGAAAGTTCGG 60.071 52.381 0.00 0.00 0.00 4.30
3931 4168 3.960755 CAGTCAGGGTAGATGGTGTATCA 59.039 47.826 0.00 0.00 38.31 2.15
3932 4169 4.590647 CAGTCAGGGTAGATGGTGTATCAT 59.409 45.833 0.00 0.00 38.31 2.45
3940 4177 7.514127 AGGGTAGATGGTGTATCATAACTGAAT 59.486 37.037 0.00 0.00 38.31 2.57
3949 4196 9.003658 GGTGTATCATAACTGAATTTCCATAGG 57.996 37.037 0.00 0.00 34.37 2.57
3966 4213 1.302907 AGGATGATGCAAAGGGGTCT 58.697 50.000 0.00 0.00 0.00 3.85
4004 4275 9.038803 TCAAATTCATCTTCATGATCTTCTACG 57.961 33.333 0.00 0.00 38.89 3.51
4020 4291 9.742552 GATCTTCTACGTTTTGTTGAATCTAAC 57.257 33.333 0.00 0.00 40.64 2.34
4021 4292 8.651391 TCTTCTACGTTTTGTTGAATCTAACA 57.349 30.769 0.00 0.00 40.64 2.41
4066 4338 1.268899 ACAATTGTTGCAGAGCTGAGC 59.731 47.619 4.92 0.00 0.00 4.26
4072 4344 0.588252 TTGCAGAGCTGAGCGTTTTC 59.412 50.000 0.00 0.00 0.00 2.29
4249 4521 2.085320 AGCGTCTTCTTTCTCGAGCTA 58.915 47.619 7.81 0.00 31.38 3.32
4350 4622 9.492973 GTTGACACCCTTTAGTTACTGTTATAA 57.507 33.333 0.00 0.00 0.00 0.98
4351 4623 9.715121 TTGACACCCTTTAGTTACTGTTATAAG 57.285 33.333 0.00 0.00 0.00 1.73
4352 4624 7.820872 TGACACCCTTTAGTTACTGTTATAAGC 59.179 37.037 0.00 0.00 0.00 3.09
4353 4625 7.914859 ACACCCTTTAGTTACTGTTATAAGCT 58.085 34.615 0.00 0.00 0.00 3.74
4541 7603 1.450025 TTGCTCTGATTCTGCAGCAG 58.550 50.000 17.10 17.10 42.66 4.24
4592 7654 1.457346 CTTTGTGGCCCAGAGTCATC 58.543 55.000 0.00 0.00 0.00 2.92
4620 7682 6.108687 CCTATGTGCTAGTTCATTGAGTGAA 58.891 40.000 7.00 0.00 44.36 3.18
4842 7906 9.107177 AGCTTCAGTTATCAATCATTTCTACAG 57.893 33.333 0.00 0.00 0.00 2.74
4943 8009 4.458989 TGTCTTTGTCTAATGGTGCCATTC 59.541 41.667 18.59 6.90 44.50 2.67
5176 8242 3.325870 TGGTCTTGTCTCAGCGTAAATG 58.674 45.455 0.00 0.00 0.00 2.32
5177 8243 3.244078 TGGTCTTGTCTCAGCGTAAATGT 60.244 43.478 0.00 0.00 0.00 2.71
5312 8483 6.314784 ACTACAGATTTACAGAATTTTGCGC 58.685 36.000 0.00 0.00 0.00 6.09
5336 8507 3.323979 TGGAGTTTCTAGGACACCTCAAC 59.676 47.826 12.29 0.00 34.61 3.18
5388 8559 1.483827 TGTATCCTCTGGCTTGCAGAG 59.516 52.381 10.55 10.55 44.19 3.35
5452 8695 8.014322 TGACGTGTTGTTCATCTATCTTTTAC 57.986 34.615 0.00 0.00 0.00 2.01
5453 8696 7.870954 TGACGTGTTGTTCATCTATCTTTTACT 59.129 33.333 0.00 0.00 0.00 2.24
5454 8697 8.240883 ACGTGTTGTTCATCTATCTTTTACTC 57.759 34.615 0.00 0.00 0.00 2.59
5455 8698 7.331193 ACGTGTTGTTCATCTATCTTTTACTCC 59.669 37.037 0.00 0.00 0.00 3.85
5456 8699 7.201530 CGTGTTGTTCATCTATCTTTTACTCCC 60.202 40.741 0.00 0.00 0.00 4.30
5457 8700 7.824779 GTGTTGTTCATCTATCTTTTACTCCCT 59.175 37.037 0.00 0.00 0.00 4.20
5458 8701 8.041323 TGTTGTTCATCTATCTTTTACTCCCTC 58.959 37.037 0.00 0.00 0.00 4.30
5459 8702 7.979786 TGTTCATCTATCTTTTACTCCCTCT 57.020 36.000 0.00 0.00 0.00 3.69
5460 8703 7.786030 TGTTCATCTATCTTTTACTCCCTCTG 58.214 38.462 0.00 0.00 0.00 3.35
5461 8704 7.400339 TGTTCATCTATCTTTTACTCCCTCTGT 59.600 37.037 0.00 0.00 0.00 3.41
5462 8705 7.589958 TCATCTATCTTTTACTCCCTCTGTC 57.410 40.000 0.00 0.00 0.00 3.51
5463 8706 6.551601 TCATCTATCTTTTACTCCCTCTGTCC 59.448 42.308 0.00 0.00 0.00 4.02
5464 8707 5.209659 TCTATCTTTTACTCCCTCTGTCCC 58.790 45.833 0.00 0.00 0.00 4.46
5465 8708 3.269592 TCTTTTACTCCCTCTGTCCCA 57.730 47.619 0.00 0.00 0.00 4.37
5466 8709 3.593942 TCTTTTACTCCCTCTGTCCCAA 58.406 45.455 0.00 0.00 0.00 4.12
5467 8710 3.977999 TCTTTTACTCCCTCTGTCCCAAA 59.022 43.478 0.00 0.00 0.00 3.28
5468 8711 4.414182 TCTTTTACTCCCTCTGTCCCAAAA 59.586 41.667 0.00 0.00 0.00 2.44
5469 8712 5.074515 TCTTTTACTCCCTCTGTCCCAAAAT 59.925 40.000 0.00 0.00 0.00 1.82
5470 8713 6.273730 TCTTTTACTCCCTCTGTCCCAAAATA 59.726 38.462 0.00 0.00 0.00 1.40
5471 8714 6.652205 TTTACTCCCTCTGTCCCAAAATAT 57.348 37.500 0.00 0.00 0.00 1.28
5472 8715 7.758820 TTTACTCCCTCTGTCCCAAAATATA 57.241 36.000 0.00 0.00 0.00 0.86
5473 8716 7.758820 TTACTCCCTCTGTCCCAAAATATAA 57.241 36.000 0.00 0.00 0.00 0.98
5474 8717 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
5475 8718 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
5476 8719 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
5477 8720 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
5478 8721 6.216662 TCCCTCTGTCCCAAAATATAAGAACA 59.783 38.462 0.00 0.00 0.00 3.18
5479 8722 7.062957 CCCTCTGTCCCAAAATATAAGAACAT 58.937 38.462 0.00 0.00 0.00 2.71
5480 8723 7.561356 CCCTCTGTCCCAAAATATAAGAACATT 59.439 37.037 0.00 0.00 0.00 2.71
5481 8724 8.971073 CCTCTGTCCCAAAATATAAGAACATTT 58.029 33.333 0.00 0.00 0.00 2.32
5498 8741 8.232913 AGAACATTTTAACATTACACCAGTGT 57.767 30.769 8.71 8.71 46.87 3.55
5499 8742 8.349983 AGAACATTTTAACATTACACCAGTGTC 58.650 33.333 6.72 0.00 43.74 3.67
5500 8743 7.575414 ACATTTTAACATTACACCAGTGTCA 57.425 32.000 6.72 0.00 43.74 3.58
5501 8744 8.001881 ACATTTTAACATTACACCAGTGTCAA 57.998 30.769 6.72 1.55 43.74 3.18
5502 8745 8.470805 ACATTTTAACATTACACCAGTGTCAAA 58.529 29.630 6.72 0.00 43.74 2.69
5503 8746 9.307121 CATTTTAACATTACACCAGTGTCAAAA 57.693 29.630 6.72 6.38 43.74 2.44
5504 8747 9.877178 ATTTTAACATTACACCAGTGTCAAAAA 57.123 25.926 6.72 6.97 43.74 1.94
5505 8748 8.690680 TTTAACATTACACCAGTGTCAAAAAC 57.309 30.769 6.72 0.00 43.74 2.43
5506 8749 4.915704 ACATTACACCAGTGTCAAAAACG 58.084 39.130 6.72 0.00 43.74 3.60
5507 8750 4.396790 ACATTACACCAGTGTCAAAAACGT 59.603 37.500 6.72 0.00 43.74 3.99
5508 8751 5.106078 ACATTACACCAGTGTCAAAAACGTT 60.106 36.000 6.72 0.00 43.74 3.99
5509 8752 3.481112 ACACCAGTGTCAAAAACGTTC 57.519 42.857 0.00 0.00 40.24 3.95
5510 8753 3.078837 ACACCAGTGTCAAAAACGTTCT 58.921 40.909 0.00 0.00 40.24 3.01
5511 8754 3.504520 ACACCAGTGTCAAAAACGTTCTT 59.495 39.130 0.00 0.00 40.24 2.52
5512 8755 4.696402 ACACCAGTGTCAAAAACGTTCTTA 59.304 37.500 0.00 0.00 40.24 2.10
5513 8756 5.355910 ACACCAGTGTCAAAAACGTTCTTAT 59.644 36.000 0.00 0.00 40.24 1.73
5514 8757 6.539464 ACACCAGTGTCAAAAACGTTCTTATA 59.461 34.615 0.00 0.00 40.24 0.98
5515 8758 7.227910 ACACCAGTGTCAAAAACGTTCTTATAT 59.772 33.333 0.00 0.00 40.24 0.86
5516 8759 8.073768 CACCAGTGTCAAAAACGTTCTTATATT 58.926 33.333 0.00 0.00 0.00 1.28
5517 8760 9.275398 ACCAGTGTCAAAAACGTTCTTATATTA 57.725 29.630 0.00 0.00 0.00 0.98
5521 8764 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
5522 8765 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
5525 8768 9.677567 CAAAAACGTTCTTATATTATGGGATGG 57.322 33.333 0.00 0.00 0.00 3.51
5526 8769 9.635404 AAAAACGTTCTTATATTATGGGATGGA 57.365 29.630 0.00 0.00 0.00 3.41
5527 8770 8.848474 AAACGTTCTTATATTATGGGATGGAG 57.152 34.615 0.00 0.00 0.00 3.86
5528 8771 6.947464 ACGTTCTTATATTATGGGATGGAGG 58.053 40.000 0.00 0.00 0.00 4.30
5529 8772 6.070194 ACGTTCTTATATTATGGGATGGAGGG 60.070 42.308 0.00 0.00 0.00 4.30
5530 8773 6.156256 CGTTCTTATATTATGGGATGGAGGGA 59.844 42.308 0.00 0.00 0.00 4.20
5531 8774 7.569240 GTTCTTATATTATGGGATGGAGGGAG 58.431 42.308 0.00 0.00 0.00 4.30
5532 8775 6.826727 TCTTATATTATGGGATGGAGGGAGT 58.173 40.000 0.00 0.00 0.00 3.85
5554 8797 0.606604 TACAACTCCACCTCCGAAGC 59.393 55.000 0.00 0.00 0.00 3.86
5612 8855 2.364972 AAGCCAGCCTGTACAAGTTT 57.635 45.000 0.00 0.00 0.00 2.66
5616 8859 2.095059 GCCAGCCTGTACAAGTTTCATG 60.095 50.000 0.00 0.00 0.00 3.07
5645 8888 4.280436 TGGAAAGAAAGAAGGCGATACA 57.720 40.909 0.00 0.00 0.00 2.29
5659 8902 1.390803 CGATACAAACGCAACGGCTAA 59.609 47.619 0.00 0.00 38.10 3.09
5729 8973 1.884579 AGAACCAGAAACGAGCTACGA 59.115 47.619 11.64 0.00 45.77 3.43
5760 9004 2.333926 TCACCACGAATTTAGCACTCG 58.666 47.619 0.00 0.00 38.53 4.18
5763 9007 2.288579 ACCACGAATTTAGCACTCGTCA 60.289 45.455 0.00 0.00 43.55 4.35
5793 9037 3.806521 CAGACTGAGAAGTGTGGAAACTG 59.193 47.826 0.00 0.00 30.54 3.16
5822 9066 3.873910 TGGATTTGTCGAAAGGAGATCC 58.126 45.455 0.00 0.00 33.52 3.36
5844 9088 1.876799 ACGCCGAGATGATGTAGAGAG 59.123 52.381 0.00 0.00 0.00 3.20
5850 9115 4.395854 CCGAGATGATGTAGAGAGGATCAG 59.604 50.000 0.00 0.00 37.82 2.90
5871 9136 2.986311 GGCACGTTGAAGACACAGA 58.014 52.632 0.00 0.00 0.00 3.41
5875 9140 2.219674 GCACGTTGAAGACACAGAAGAG 59.780 50.000 0.00 0.00 0.00 2.85
5881 9146 2.287849 TGAAGACACAGAAGAGTCGCAG 60.288 50.000 0.00 0.00 39.87 5.18
5896 9161 1.019673 CGCAGACATCATCAAAGGGG 58.980 55.000 0.00 0.00 0.00 4.79
5900 9165 3.875369 GCAGACATCATCAAAGGGGTTCT 60.875 47.826 0.00 0.00 0.00 3.01
5903 9168 1.672881 CATCATCAAAGGGGTTCTCGC 59.327 52.381 0.00 0.00 0.00 5.03
5915 9180 4.815108 TCTCGCCGCCTAGCCTCA 62.815 66.667 0.00 0.00 0.00 3.86
5925 9190 3.583806 CGCCTAGCCTCATGATAAAGAG 58.416 50.000 0.00 0.00 0.00 2.85
5932 9197 1.417890 CTCATGATAAAGAGGGGCCGT 59.582 52.381 0.00 0.00 0.00 5.68
5937 9202 2.317973 GATAAAGAGGGGCCGTAGACT 58.682 52.381 0.00 0.00 0.00 3.24
5941 9206 1.982938 GAGGGGCCGTAGACTGTGT 60.983 63.158 0.00 0.00 0.00 3.72
5951 9216 2.417719 GTAGACTGTGTTGAAGGGCAG 58.582 52.381 0.00 0.00 35.31 4.85
5956 9221 1.750778 CTGTGTTGAAGGGCAGTGTTT 59.249 47.619 0.00 0.00 0.00 2.83
5958 9223 1.748493 GTGTTGAAGGGCAGTGTTTCA 59.252 47.619 0.00 0.00 0.00 2.69
5959 9224 1.748493 TGTTGAAGGGCAGTGTTTCAC 59.252 47.619 6.42 0.00 31.11 3.18
5984 9249 1.362224 TAGCCTTGCACCTCCTCTTT 58.638 50.000 0.00 0.00 0.00 2.52
5990 9255 1.676967 GCACCTCCTCTTTGGCCAG 60.677 63.158 5.11 0.00 35.26 4.85
6020 9285 5.477510 GCCACGATCATGAATAGAGAGAAT 58.522 41.667 0.00 0.00 0.00 2.40
6025 9290 7.654923 CACGATCATGAATAGAGAGAATTGGAA 59.345 37.037 0.00 0.00 0.00 3.53
6026 9291 7.655328 ACGATCATGAATAGAGAGAATTGGAAC 59.345 37.037 0.00 0.00 0.00 3.62
6037 9302 3.535561 AGAATTGGAACACTATGCGAGG 58.464 45.455 0.00 0.00 39.29 4.63
6047 9312 4.134563 ACACTATGCGAGGAAACAAAACT 58.865 39.130 0.00 0.00 0.00 2.66
6053 9318 4.170256 TGCGAGGAAACAAAACTTCAAAC 58.830 39.130 0.00 0.00 0.00 2.93
6064 9329 5.710099 ACAAAACTTCAAACAGAGAGAACCA 59.290 36.000 0.00 0.00 0.00 3.67
6091 9356 4.693566 CACTATGCGAGGAAACAAAACCTA 59.306 41.667 0.00 0.00 36.57 3.08
6095 9360 5.523438 TGCGAGGAAACAAAACCTAAAAT 57.477 34.783 0.00 0.00 36.57 1.82
6110 9375 4.202212 ACCTAAAATGTTGTTGAAGGGCAC 60.202 41.667 0.00 0.00 0.00 5.01
6126 9391 0.868406 GCACCGAACTCCAACTTGAG 59.132 55.000 0.00 0.00 38.37 3.02
6145 9410 2.606519 TCTGAACCCGGACCCCTG 60.607 66.667 0.73 0.00 0.00 4.45
6157 9422 2.359975 CCCCTGGCACCGAGTTTC 60.360 66.667 0.00 0.00 0.00 2.78
6165 9430 1.966451 CACCGAGTTTCAGGGGTGC 60.966 63.158 0.00 0.00 42.95 5.01
6166 9431 2.147387 ACCGAGTTTCAGGGGTGCT 61.147 57.895 0.00 0.00 0.00 4.40
6167 9432 0.834687 ACCGAGTTTCAGGGGTGCTA 60.835 55.000 0.00 0.00 0.00 3.49
6168 9433 0.541863 CCGAGTTTCAGGGGTGCTAT 59.458 55.000 0.00 0.00 0.00 2.97
6169 9434 1.656652 CGAGTTTCAGGGGTGCTATG 58.343 55.000 0.00 0.00 0.00 2.23
6170 9435 1.207089 CGAGTTTCAGGGGTGCTATGA 59.793 52.381 0.00 0.00 0.00 2.15
6171 9436 2.158900 CGAGTTTCAGGGGTGCTATGAT 60.159 50.000 0.00 0.00 0.00 2.45
6172 9437 3.209410 GAGTTTCAGGGGTGCTATGATG 58.791 50.000 0.00 0.00 0.00 3.07
6173 9438 2.578021 AGTTTCAGGGGTGCTATGATGT 59.422 45.455 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.880278 GGCAACGAGTGTCAAGCTCA 60.880 55.000 0.00 0.00 33.45 4.26
150 152 4.649692 CTCTTGCATTCACATAGGGCTAT 58.350 43.478 0.00 0.00 0.00 2.97
210 212 2.290260 CCACATGCACCTGTTTCTCCTA 60.290 50.000 0.00 0.00 0.00 2.94
215 217 1.001378 GTGACCACATGCACCTGTTTC 60.001 52.381 0.00 0.00 0.00 2.78
298 475 3.746889 CGCGCAATGAAGCCCCAA 61.747 61.111 8.75 0.00 0.00 4.12
527 704 2.496070 AGCATAAACTACGAGCCTCACA 59.504 45.455 0.00 0.00 0.00 3.58
634 811 4.049393 GTGAAAGGCACAGACGCT 57.951 55.556 0.00 0.00 46.91 5.07
666 843 0.892358 CAGCAACACAGTCAGGGCAT 60.892 55.000 0.00 0.00 0.00 4.40
986 1177 2.472909 GCCATGGCTGGTACTTCGC 61.473 63.158 29.98 0.00 45.10 4.70
1221 1413 2.319136 TGAATACGGCGGCAATAACT 57.681 45.000 13.24 0.00 0.00 2.24
1251 1443 1.332997 CCGCGTAGTAGGTAGGAGTTG 59.667 57.143 4.92 0.00 0.00 3.16
1252 1444 1.673168 CCGCGTAGTAGGTAGGAGTT 58.327 55.000 4.92 0.00 0.00 3.01
1253 1445 0.179034 CCCGCGTAGTAGGTAGGAGT 60.179 60.000 4.92 0.00 0.00 3.85
1254 1446 0.179034 ACCCGCGTAGTAGGTAGGAG 60.179 60.000 4.92 0.00 33.43 3.69
1255 1447 0.464373 CACCCGCGTAGTAGGTAGGA 60.464 60.000 4.92 0.00 33.43 2.94
1256 1448 1.450531 CCACCCGCGTAGTAGGTAGG 61.451 65.000 4.92 5.57 33.43 3.18
1257 1449 2.028130 CCACCCGCGTAGTAGGTAG 58.972 63.158 4.92 0.00 33.43 3.18
1258 1450 2.120909 GCCACCCGCGTAGTAGGTA 61.121 63.158 4.92 0.00 33.43 3.08
1259 1451 3.455469 GCCACCCGCGTAGTAGGT 61.455 66.667 4.92 0.79 35.48 3.08
1268 1460 4.980805 TCACTTGTCGCCACCCGC 62.981 66.667 0.00 0.00 36.73 6.13
1281 1473 3.243367 GCTCAAGTATGCGAGAGATCACT 60.243 47.826 9.11 0.00 0.00 3.41
1291 1483 2.537529 CGTGGATTTGCTCAAGTATGCG 60.538 50.000 0.00 0.00 0.00 4.73
1296 1488 1.160137 GCTCGTGGATTTGCTCAAGT 58.840 50.000 0.00 0.00 0.00 3.16
1304 1496 1.549203 AAATGGCAGCTCGTGGATTT 58.451 45.000 0.00 0.00 0.00 2.17
1312 1504 4.397417 AGACACTGAATAAAATGGCAGCTC 59.603 41.667 0.00 0.00 31.74 4.09
1331 1523 3.368427 CCTGACCATTTCGAGCTAAGACA 60.368 47.826 0.00 0.00 0.00 3.41
1332 1524 3.190874 CCTGACCATTTCGAGCTAAGAC 58.809 50.000 0.00 0.00 0.00 3.01
1334 1526 2.093447 ACCCTGACCATTTCGAGCTAAG 60.093 50.000 0.00 0.00 0.00 2.18
1339 1531 1.806542 CAACACCCTGACCATTTCGAG 59.193 52.381 0.00 0.00 0.00 4.04
1342 1534 1.995376 ACCAACACCCTGACCATTTC 58.005 50.000 0.00 0.00 0.00 2.17
1354 1546 4.034742 ACACGATACTTCAACAACCAACAC 59.965 41.667 0.00 0.00 0.00 3.32
1355 1547 4.034626 CACACGATACTTCAACAACCAACA 59.965 41.667 0.00 0.00 0.00 3.33
1367 1563 2.341257 CTGAAGCTGCACACGATACTT 58.659 47.619 1.02 0.00 0.00 2.24
1372 1568 1.830587 ATCCCTGAAGCTGCACACGA 61.831 55.000 1.02 0.00 0.00 4.35
1373 1569 0.957395 AATCCCTGAAGCTGCACACG 60.957 55.000 1.02 0.00 0.00 4.49
1374 1570 1.251251 AAATCCCTGAAGCTGCACAC 58.749 50.000 1.02 0.00 0.00 3.82
1375 1571 1.999648 AAAATCCCTGAAGCTGCACA 58.000 45.000 1.02 0.62 0.00 4.57
1376 1572 2.424956 CCTAAAATCCCTGAAGCTGCAC 59.575 50.000 1.02 0.00 0.00 4.57
1377 1573 2.621407 CCCTAAAATCCCTGAAGCTGCA 60.621 50.000 1.02 0.00 0.00 4.41
1378 1574 2.027385 CCCTAAAATCCCTGAAGCTGC 58.973 52.381 0.00 0.00 0.00 5.25
1379 1575 2.027385 GCCCTAAAATCCCTGAAGCTG 58.973 52.381 0.00 0.00 0.00 4.24
1380 1576 1.408822 CGCCCTAAAATCCCTGAAGCT 60.409 52.381 0.00 0.00 0.00 3.74
1381 1577 1.025041 CGCCCTAAAATCCCTGAAGC 58.975 55.000 0.00 0.00 0.00 3.86
1382 1578 1.064685 ACCGCCCTAAAATCCCTGAAG 60.065 52.381 0.00 0.00 0.00 3.02
1383 1579 0.996583 ACCGCCCTAAAATCCCTGAA 59.003 50.000 0.00 0.00 0.00 3.02
1384 1580 1.766496 CTACCGCCCTAAAATCCCTGA 59.234 52.381 0.00 0.00 0.00 3.86
1385 1581 1.489230 ACTACCGCCCTAAAATCCCTG 59.511 52.381 0.00 0.00 0.00 4.45
1386 1582 1.767088 GACTACCGCCCTAAAATCCCT 59.233 52.381 0.00 0.00 0.00 4.20
1387 1583 1.539712 CGACTACCGCCCTAAAATCCC 60.540 57.143 0.00 0.00 0.00 3.85
1388 1584 1.137675 ACGACTACCGCCCTAAAATCC 59.862 52.381 0.00 0.00 43.32 3.01
1389 1585 2.591571 ACGACTACCGCCCTAAAATC 57.408 50.000 0.00 0.00 43.32 2.17
1390 1586 3.801293 GCATACGACTACCGCCCTAAAAT 60.801 47.826 0.00 0.00 43.32 1.82
1391 1587 2.481795 GCATACGACTACCGCCCTAAAA 60.482 50.000 0.00 0.00 43.32 1.52
1392 1588 1.067516 GCATACGACTACCGCCCTAAA 59.932 52.381 0.00 0.00 43.32 1.85
1393 1589 0.670162 GCATACGACTACCGCCCTAA 59.330 55.000 0.00 0.00 43.32 2.69
1394 1590 0.179009 AGCATACGACTACCGCCCTA 60.179 55.000 0.00 0.00 43.32 3.53
1395 1591 0.179009 TAGCATACGACTACCGCCCT 60.179 55.000 0.00 0.00 43.32 5.19
1396 1592 0.039708 GTAGCATACGACTACCGCCC 60.040 60.000 0.00 0.00 43.32 6.13
1412 1608 5.165676 TGAAACGCACACCAGTATTAGTAG 58.834 41.667 0.00 0.00 0.00 2.57
1413 1609 5.136816 TGAAACGCACACCAGTATTAGTA 57.863 39.130 0.00 0.00 0.00 1.82
1414 1610 3.994392 CTGAAACGCACACCAGTATTAGT 59.006 43.478 0.00 0.00 0.00 2.24
1424 1620 4.025229 TGAACTATGAACTGAAACGCACAC 60.025 41.667 0.00 0.00 0.00 3.82
1427 1623 5.295787 AGTTTGAACTATGAACTGAAACGCA 59.704 36.000 0.00 0.00 37.52 5.24
1452 1648 9.431887 ACGACTAAAATTGTAGTGACATGTATT 57.568 29.630 13.21 0.00 34.40 1.89
1453 1649 8.997621 ACGACTAAAATTGTAGTGACATGTAT 57.002 30.769 13.21 0.00 34.40 2.29
1478 1674 9.976511 ACCGTAGTTACACGTATTAGTAGTATA 57.023 33.333 0.00 0.00 40.31 1.47
1479 1675 8.765219 CACCGTAGTTACACGTATTAGTAGTAT 58.235 37.037 0.00 0.00 40.31 2.12
1480 1676 7.223971 CCACCGTAGTTACACGTATTAGTAGTA 59.776 40.741 0.00 0.00 40.31 1.82
1481 1677 6.037172 CCACCGTAGTTACACGTATTAGTAGT 59.963 42.308 0.00 0.00 40.31 2.73
1482 1678 6.257849 TCCACCGTAGTTACACGTATTAGTAG 59.742 42.308 0.00 0.00 40.31 2.57
1483 1679 6.110033 TCCACCGTAGTTACACGTATTAGTA 58.890 40.000 0.00 0.00 40.31 1.82
1484 1680 4.941263 TCCACCGTAGTTACACGTATTAGT 59.059 41.667 0.00 0.00 40.31 2.24
1485 1681 5.484173 TCCACCGTAGTTACACGTATTAG 57.516 43.478 0.00 0.00 40.31 1.73
1486 1682 5.414454 AGTTCCACCGTAGTTACACGTATTA 59.586 40.000 0.00 0.00 40.31 0.98
1487 1683 4.218417 AGTTCCACCGTAGTTACACGTATT 59.782 41.667 0.00 0.00 40.31 1.89
1488 1684 3.758554 AGTTCCACCGTAGTTACACGTAT 59.241 43.478 0.00 0.00 40.31 3.06
1489 1685 3.058293 CAGTTCCACCGTAGTTACACGTA 60.058 47.826 0.00 0.00 40.31 3.57
1490 1686 1.956477 AGTTCCACCGTAGTTACACGT 59.044 47.619 6.59 0.00 40.31 4.49
1491 1687 2.030893 TCAGTTCCACCGTAGTTACACG 60.031 50.000 1.54 1.54 41.59 4.49
1492 1688 3.648339 TCAGTTCCACCGTAGTTACAC 57.352 47.619 0.00 0.00 0.00 2.90
1493 1689 4.084287 AGATCAGTTCCACCGTAGTTACA 58.916 43.478 0.00 0.00 0.00 2.41
1494 1690 4.715527 AGATCAGTTCCACCGTAGTTAC 57.284 45.455 0.00 0.00 0.00 2.50
1495 1691 5.948162 AGTTAGATCAGTTCCACCGTAGTTA 59.052 40.000 0.00 0.00 0.00 2.24
1496 1692 4.771054 AGTTAGATCAGTTCCACCGTAGTT 59.229 41.667 0.00 0.00 0.00 2.24
1497 1693 4.158025 CAGTTAGATCAGTTCCACCGTAGT 59.842 45.833 0.00 0.00 0.00 2.73
1498 1694 4.673441 CAGTTAGATCAGTTCCACCGTAG 58.327 47.826 0.00 0.00 0.00 3.51
1499 1695 3.119245 GCAGTTAGATCAGTTCCACCGTA 60.119 47.826 0.00 0.00 0.00 4.02
1500 1696 2.353803 GCAGTTAGATCAGTTCCACCGT 60.354 50.000 0.00 0.00 0.00 4.83
1516 1712 3.370953 CCTGCAGAAGGGTAATAGCAGTT 60.371 47.826 17.39 0.00 45.80 3.16
1517 1713 2.171448 CCTGCAGAAGGGTAATAGCAGT 59.829 50.000 17.39 0.00 45.80 4.40
1583 1779 3.913548 TGTGGTGATTTGAATGGAACG 57.086 42.857 0.00 0.00 0.00 3.95
1625 1821 8.844690 GCTATTTCAATTTGAAGAAGAGAAACG 58.155 33.333 19.21 0.00 37.70 3.60
1796 1993 4.295051 CAATTTGGGTTAACACAACCTCG 58.705 43.478 22.70 8.23 39.27 4.63
1811 2008 3.865684 GCAACTCAACATCCCCAATTTGG 60.866 47.826 8.56 8.56 37.25 3.28
1874 2071 1.140852 TGGGCAGCAATAGTTATCGCT 59.859 47.619 0.00 0.00 34.29 4.93
1980 2192 6.437477 TGGTATATGACTTATGGCTGTAGAGG 59.563 42.308 0.00 0.00 0.00 3.69
2150 2363 3.546670 CGTTACTCCACATTCGCTAAGAC 59.453 47.826 0.00 0.00 0.00 3.01
2152 2365 2.858344 CCGTTACTCCACATTCGCTAAG 59.142 50.000 0.00 0.00 0.00 2.18
2154 2367 1.820519 ACCGTTACTCCACATTCGCTA 59.179 47.619 0.00 0.00 0.00 4.26
2155 2368 0.606604 ACCGTTACTCCACATTCGCT 59.393 50.000 0.00 0.00 0.00 4.93
2156 2369 2.282701 TACCGTTACTCCACATTCGC 57.717 50.000 0.00 0.00 0.00 4.70
2162 2375 8.546244 GCTCTTAATAAATTACCGTTACTCCAC 58.454 37.037 0.00 0.00 0.00 4.02
2178 2391 9.494271 GAAGGTCATCACATATGCTCTTAATAA 57.506 33.333 1.58 0.00 0.00 1.40
2250 2468 3.970842 ACCCTTTGTGTTCAGTTAACCA 58.029 40.909 0.88 0.00 37.27 3.67
2254 2472 3.387374 TCGGTACCCTTTGTGTTCAGTTA 59.613 43.478 6.25 0.00 0.00 2.24
2270 2488 6.700520 CCTATCTGTTCTTATTGGTTCGGTAC 59.299 42.308 0.00 0.00 0.00 3.34
2272 2490 5.671493 CCTATCTGTTCTTATTGGTTCGGT 58.329 41.667 0.00 0.00 0.00 4.69
2429 2654 3.123273 AGGTAGCCTAACAATCCACCAT 58.877 45.455 0.00 0.00 28.47 3.55
2735 2960 5.309638 TCCACGACAAGGTTTGAAATATCA 58.690 37.500 0.00 0.00 0.00 2.15
2764 2989 8.008513 TCTTATCCACTGAGGTACTTTATGAC 57.991 38.462 0.00 0.00 41.55 3.06
2772 2997 6.884836 ACCAAAAATCTTATCCACTGAGGTAC 59.115 38.462 0.00 0.00 39.02 3.34
2832 3057 3.681593 TGTAACATGTAAAGAGCACCCC 58.318 45.455 0.00 0.00 0.00 4.95
3011 3236 7.559486 TCACAAGATAGCATAACTGATCAAGT 58.441 34.615 0.00 0.00 42.60 3.16
3110 3335 3.456644 TCCTTGGGTTGTACTCTGACAAA 59.543 43.478 0.00 0.00 40.88 2.83
3124 3351 8.061304 AGATAAAATGTTGTATGATCCTTGGGT 58.939 33.333 0.00 0.00 0.00 4.51
3140 3367 1.745087 CGCAGCCCACAGATAAAATGT 59.255 47.619 0.00 0.00 0.00 2.71
3267 3495 7.615365 TCAAAGTATAATCAGGAAAGCACCATT 59.385 33.333 0.00 0.00 0.00 3.16
3304 3532 3.933861 ACCAAGATATGAGGTGGGAAC 57.066 47.619 0.00 0.00 35.32 3.62
3309 3537 6.015095 TGCTCAGTATACCAAGATATGAGGTG 60.015 42.308 14.39 0.00 36.87 4.00
3401 3629 6.010850 AGTTGAGACAGTGAACCTGAGTATA 58.989 40.000 0.00 0.00 44.49 1.47
3413 3641 5.920840 TCGAATCAGTAAAGTTGAGACAGTG 59.079 40.000 0.00 0.00 0.00 3.66
3638 3866 3.865745 CAGAAATAACAGTACCCGAGCAG 59.134 47.826 0.00 0.00 0.00 4.24
3707 3937 7.902087 AGGAAAAGCTAGTATGCTATAAGGAG 58.098 38.462 0.00 0.00 43.24 3.69
3837 4073 4.100498 CCCTTTTCAGCAAATGGAGCATAT 59.900 41.667 3.71 0.00 38.55 1.78
3909 4146 3.960755 TGATACACCATCTACCCTGACTG 59.039 47.826 0.00 0.00 34.46 3.51
3931 4168 7.946219 TGCATCATCCTATGGAAATTCAGTTAT 59.054 33.333 0.00 0.00 34.34 1.89
3932 4169 7.289310 TGCATCATCCTATGGAAATTCAGTTA 58.711 34.615 0.00 0.00 34.34 2.24
3940 4177 4.217510 CCCTTTGCATCATCCTATGGAAA 58.782 43.478 3.95 3.95 42.59 3.13
3949 4196 2.450476 ACAAGACCCCTTTGCATCATC 58.550 47.619 0.00 0.00 0.00 2.92
3966 4213 8.256605 TGAAGATGAATTTGAAAAGGTCAACAA 58.743 29.630 0.00 0.00 46.09 2.83
3980 4245 8.954950 ACGTAGAAGATCATGAAGATGAATTT 57.045 30.769 0.00 0.00 42.02 1.82
4004 4275 8.340230 CAAGACCTTGTTAGATTCAACAAAAC 57.660 34.615 12.34 8.55 45.21 2.43
4020 4291 6.808008 ATAGTTGATTCACACAAGACCTTG 57.192 37.500 8.11 8.11 45.58 3.61
4021 4292 7.440523 GAATAGTTGATTCACACAAGACCTT 57.559 36.000 0.00 0.00 43.16 3.50
4066 4338 3.186909 TGACATAGATGCTCCGAAAACG 58.813 45.455 0.00 0.00 0.00 3.60
4072 4344 1.871408 GCACCTGACATAGATGCTCCG 60.871 57.143 0.00 0.00 33.44 4.63
4249 4521 7.802117 ACTATACCTGCAATATTACCACAAGT 58.198 34.615 0.00 0.00 0.00 3.16
4368 7429 6.110543 TCATAATTCAACTCATGCAGTTCG 57.889 37.500 7.35 5.12 44.14 3.95
4457 7519 8.797438 TGTAAAGCATATTCACACAATTAACCA 58.203 29.630 0.00 0.00 0.00 3.67
4458 7520 9.072294 GTGTAAAGCATATTCACACAATTAACC 57.928 33.333 0.00 0.00 39.39 2.85
4541 7603 7.793036 AGGATAACATGAACTAGAGGGTTTAC 58.207 38.462 0.00 0.00 0.00 2.01
4592 7654 2.988010 TGAACTAGCACATAGGGCTG 57.012 50.000 3.62 0.00 42.62 4.85
4620 7682 4.593206 TGTTCAGTACTTCTCATCCCACTT 59.407 41.667 0.00 0.00 0.00 3.16
4621 7683 4.160329 TGTTCAGTACTTCTCATCCCACT 58.840 43.478 0.00 0.00 0.00 4.00
4625 7687 4.508662 CCCTTGTTCAGTACTTCTCATCC 58.491 47.826 0.00 0.00 0.00 3.51
4842 7906 1.086696 AACATATGGACACAGTGCGC 58.913 50.000 7.80 0.00 0.00 6.09
4986 8052 4.327680 AGTCATGCTTAAAGGAACCTGAC 58.672 43.478 0.00 0.00 33.64 3.51
5176 8242 9.717942 ATGAAAGAATGATAACCTATGCTCTAC 57.282 33.333 0.00 0.00 0.00 2.59
5312 8483 1.893801 AGGTGTCCTAGAAACTCCACG 59.106 52.381 14.74 0.00 33.66 4.94
5336 8507 0.391661 ACCATACTGCACGGCTTCAG 60.392 55.000 0.00 0.00 36.45 3.02
5388 8559 7.342318 TCAGTATACAAAAACGCTACAGTTC 57.658 36.000 5.50 0.00 32.43 3.01
5452 8695 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
5453 8696 6.216662 TGTTCTTATATTTTGGGACAGAGGGA 59.783 38.462 0.00 0.00 42.39 4.20
5454 8697 6.423182 TGTTCTTATATTTTGGGACAGAGGG 58.577 40.000 0.00 0.00 42.39 4.30
5455 8698 8.525290 AATGTTCTTATATTTTGGGACAGAGG 57.475 34.615 0.00 0.00 42.39 3.69
5472 8715 8.691797 ACACTGGTGTAATGTTAAAATGTTCTT 58.308 29.630 4.42 0.00 42.90 2.52
5473 8716 8.232913 ACACTGGTGTAATGTTAAAATGTTCT 57.767 30.769 4.42 0.00 42.90 3.01
5474 8717 8.132362 TGACACTGGTGTAATGTTAAAATGTTC 58.868 33.333 6.35 0.00 45.05 3.18
5475 8718 8.001881 TGACACTGGTGTAATGTTAAAATGTT 57.998 30.769 6.35 0.00 45.05 2.71
5476 8719 7.575414 TGACACTGGTGTAATGTTAAAATGT 57.425 32.000 6.35 0.00 45.05 2.71
5477 8720 8.864069 TTTGACACTGGTGTAATGTTAAAATG 57.136 30.769 6.35 0.00 45.05 2.32
5478 8721 9.877178 TTTTTGACACTGGTGTAATGTTAAAAT 57.123 25.926 6.35 0.00 45.05 1.82
5479 8722 9.141400 GTTTTTGACACTGGTGTAATGTTAAAA 57.859 29.630 6.35 3.13 45.05 1.52
5480 8723 7.485277 CGTTTTTGACACTGGTGTAATGTTAAA 59.515 33.333 6.35 0.00 45.05 1.52
5481 8724 6.967767 CGTTTTTGACACTGGTGTAATGTTAA 59.032 34.615 6.35 0.00 45.05 2.01
5482 8725 6.093771 ACGTTTTTGACACTGGTGTAATGTTA 59.906 34.615 6.35 0.00 45.05 2.41
5483 8726 5.106078 ACGTTTTTGACACTGGTGTAATGTT 60.106 36.000 6.35 0.00 45.05 2.71
5484 8727 4.396790 ACGTTTTTGACACTGGTGTAATGT 59.603 37.500 6.35 6.31 45.05 2.71
5485 8728 4.915704 ACGTTTTTGACACTGGTGTAATG 58.084 39.130 6.35 5.75 45.05 1.90
5486 8729 5.355910 AGAACGTTTTTGACACTGGTGTAAT 59.644 36.000 0.46 0.00 45.05 1.89
5487 8730 4.696402 AGAACGTTTTTGACACTGGTGTAA 59.304 37.500 0.46 0.00 45.05 2.41
5488 8731 4.255301 AGAACGTTTTTGACACTGGTGTA 58.745 39.130 0.46 0.00 45.05 2.90
5490 8733 3.757745 AGAACGTTTTTGACACTGGTG 57.242 42.857 0.46 0.00 0.00 4.17
5491 8734 7.739498 ATATAAGAACGTTTTTGACACTGGT 57.261 32.000 13.87 0.00 0.00 4.00
5495 8738 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
5496 8739 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
5499 8742 9.677567 CCATCCCATAATATAAGAACGTTTTTG 57.322 33.333 13.87 0.00 0.00 2.44
5500 8743 9.635404 TCCATCCCATAATATAAGAACGTTTTT 57.365 29.630 9.22 9.22 0.00 1.94
5501 8744 9.284968 CTCCATCCCATAATATAAGAACGTTTT 57.715 33.333 0.46 0.00 0.00 2.43
5502 8745 7.883311 CCTCCATCCCATAATATAAGAACGTTT 59.117 37.037 0.46 0.00 0.00 3.60
5503 8746 7.394816 CCTCCATCCCATAATATAAGAACGTT 58.605 38.462 0.00 0.00 0.00 3.99
5504 8747 6.070194 CCCTCCATCCCATAATATAAGAACGT 60.070 42.308 0.00 0.00 0.00 3.99
5505 8748 6.156256 TCCCTCCATCCCATAATATAAGAACG 59.844 42.308 0.00 0.00 0.00 3.95
5506 8749 7.182930 ACTCCCTCCATCCCATAATATAAGAAC 59.817 40.741 0.00 0.00 0.00 3.01
5507 8750 7.263901 ACTCCCTCCATCCCATAATATAAGAA 58.736 38.462 0.00 0.00 0.00 2.52
5508 8751 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
5509 8752 8.624019 TTACTCCCTCCATCCCATAATATAAG 57.376 38.462 0.00 0.00 0.00 1.73
5511 8754 9.670442 GTATTACTCCCTCCATCCCATAATATA 57.330 37.037 0.00 0.00 0.00 0.86
5512 8755 8.135586 TGTATTACTCCCTCCATCCCATAATAT 58.864 37.037 0.00 0.00 0.00 1.28
5513 8756 7.492552 TGTATTACTCCCTCCATCCCATAATA 58.507 38.462 0.00 0.00 0.00 0.98
5514 8757 6.339220 TGTATTACTCCCTCCATCCCATAAT 58.661 40.000 0.00 0.00 0.00 1.28
5515 8758 5.733000 TGTATTACTCCCTCCATCCCATAA 58.267 41.667 0.00 0.00 0.00 1.90
5516 8759 5.363124 TGTATTACTCCCTCCATCCCATA 57.637 43.478 0.00 0.00 0.00 2.74
5517 8760 4.228237 TGTATTACTCCCTCCATCCCAT 57.772 45.455 0.00 0.00 0.00 4.00
5518 8761 3.714798 GTTGTATTACTCCCTCCATCCCA 59.285 47.826 0.00 0.00 0.00 4.37
5519 8762 3.974642 AGTTGTATTACTCCCTCCATCCC 59.025 47.826 0.00 0.00 0.00 3.85
5520 8763 5.216614 GAGTTGTATTACTCCCTCCATCC 57.783 47.826 0.00 0.00 38.88 3.51
5529 8772 3.698040 TCGGAGGTGGAGTTGTATTACTC 59.302 47.826 0.00 0.00 43.05 2.59
5530 8773 3.705051 TCGGAGGTGGAGTTGTATTACT 58.295 45.455 0.00 0.00 0.00 2.24
5531 8774 4.430908 CTTCGGAGGTGGAGTTGTATTAC 58.569 47.826 0.00 0.00 0.00 1.89
5532 8775 3.118884 GCTTCGGAGGTGGAGTTGTATTA 60.119 47.826 0.00 0.00 0.00 0.98
5554 8797 5.921976 TGCTTCAAAACAGAAGTGCAATATG 59.078 36.000 5.70 0.00 45.28 1.78
5612 8855 7.927629 CCTTCTTTCTTTCCAAAATGAACATGA 59.072 33.333 0.00 0.00 30.68 3.07
5616 8859 5.175673 CGCCTTCTTTCTTTCCAAAATGAAC 59.824 40.000 0.00 0.00 30.68 3.18
5645 8888 2.356695 ACTTTCTTTAGCCGTTGCGTTT 59.643 40.909 0.00 0.00 44.33 3.60
5659 8902 1.878102 CGTGCCAGGTGCTACTTTCTT 60.878 52.381 0.00 0.00 42.00 2.52
5681 8924 4.390264 ACTTCTTCCCTGTAACTTCTTGC 58.610 43.478 0.00 0.00 0.00 4.01
5729 8973 0.324614 TCGTGGTGATGATTGCCTGT 59.675 50.000 0.00 0.00 0.00 4.00
5760 9004 2.163509 TCTCAGTCTGCCTAGTGTGAC 58.836 52.381 0.00 0.00 0.00 3.67
5763 9007 2.560542 CACTTCTCAGTCTGCCTAGTGT 59.439 50.000 14.73 3.10 0.00 3.55
5793 9037 7.065803 TCTCCTTTCGACAAATCCAACAATATC 59.934 37.037 0.00 0.00 0.00 1.63
5822 9066 0.586802 TCTACATCATCTCGGCGTCG 59.413 55.000 1.15 1.15 37.82 5.12
5844 9088 0.669318 TTCAACGTGCCGACTGATCC 60.669 55.000 0.00 0.00 0.00 3.36
5850 9115 1.149361 TGTGTCTTCAACGTGCCGAC 61.149 55.000 0.00 0.00 0.00 4.79
5858 9123 2.473235 GCGACTCTTCTGTGTCTTCAAC 59.527 50.000 0.00 0.00 35.31 3.18
5868 9133 2.643933 TGATGTCTGCGACTCTTCTG 57.356 50.000 9.49 0.00 33.15 3.02
5871 9136 3.599730 TTGATGATGTCTGCGACTCTT 57.400 42.857 9.49 4.33 33.15 2.85
5875 9140 1.667724 CCCTTTGATGATGTCTGCGAC 59.332 52.381 0.00 2.32 0.00 5.19
5881 9146 2.939103 CGAGAACCCCTTTGATGATGTC 59.061 50.000 0.00 0.00 0.00 3.06
5896 9161 3.776659 GAGGCTAGGCGGCGAGAAC 62.777 68.421 23.03 13.78 44.22 3.01
5900 9165 3.916544 CATGAGGCTAGGCGGCGA 61.917 66.667 12.98 0.00 44.22 5.54
5903 9168 2.300152 TCTTTATCATGAGGCTAGGCGG 59.700 50.000 11.10 2.46 0.00 6.13
5915 9180 2.633481 GTCTACGGCCCCTCTTTATCAT 59.367 50.000 0.00 0.00 0.00 2.45
5925 9190 1.375523 CAACACAGTCTACGGCCCC 60.376 63.158 0.00 0.00 0.00 5.80
5932 9197 2.047061 ACTGCCCTTCAACACAGTCTA 58.953 47.619 0.00 0.00 39.04 2.59
5937 9202 1.748493 GAAACACTGCCCTTCAACACA 59.252 47.619 0.00 0.00 0.00 3.72
5941 9206 2.435372 AGTGAAACACTGCCCTTCAA 57.565 45.000 3.54 0.00 43.63 2.69
5951 9216 3.126000 GCAAGGCTATCTCAGTGAAACAC 59.874 47.826 0.00 0.00 41.43 3.32
5956 9221 1.208052 GGTGCAAGGCTATCTCAGTGA 59.792 52.381 0.00 0.00 0.00 3.41
5958 9223 1.484240 GAGGTGCAAGGCTATCTCAGT 59.516 52.381 0.00 0.00 0.00 3.41
5959 9224 1.202627 GGAGGTGCAAGGCTATCTCAG 60.203 57.143 0.00 0.00 0.00 3.35
5990 9255 2.104331 ATGATCGTGGCCGTCGTC 59.896 61.111 17.32 14.35 35.01 4.20
6003 9268 8.492782 AGTGTTCCAATTCTCTCTATTCATGAT 58.507 33.333 0.00 0.00 0.00 2.45
6020 9285 3.071479 GTTTCCTCGCATAGTGTTCCAA 58.929 45.455 0.00 0.00 0.00 3.53
6025 9290 4.134563 AGTTTTGTTTCCTCGCATAGTGT 58.865 39.130 0.00 0.00 0.00 3.55
6026 9291 4.749245 AGTTTTGTTTCCTCGCATAGTG 57.251 40.909 0.00 0.00 0.00 2.74
6037 9302 7.273598 GGTTCTCTCTGTTTGAAGTTTTGTTTC 59.726 37.037 0.00 0.00 0.00 2.78
6047 9312 3.134623 TGCTCTGGTTCTCTCTGTTTGAA 59.865 43.478 0.00 0.00 0.00 2.69
6053 9318 3.737663 GCATAGTGCTCTGGTTCTCTCTG 60.738 52.174 0.00 0.00 40.96 3.35
6064 9329 1.550524 TGTTTCCTCGCATAGTGCTCT 59.449 47.619 0.10 0.00 42.25 4.09
6076 9341 8.387354 CAACAACATTTTAGGTTTTGTTTCCTC 58.613 33.333 0.00 0.00 38.11 3.71
6091 9356 2.482839 CGGTGCCCTTCAACAACATTTT 60.483 45.455 0.00 0.00 31.06 1.82
6095 9360 0.394488 TTCGGTGCCCTTCAACAACA 60.394 50.000 0.00 0.00 31.06 3.33
6110 9375 1.344763 AGACCTCAAGTTGGAGTTCGG 59.655 52.381 2.34 0.00 32.20 4.30
6111 9376 2.035961 TCAGACCTCAAGTTGGAGTTCG 59.964 50.000 2.34 0.00 32.20 3.95
6138 9403 3.192103 AAACTCGGTGCCAGGGGTC 62.192 63.158 0.00 0.00 0.00 4.46
6145 9410 2.359975 CCCCTGAAACTCGGTGCC 60.360 66.667 0.00 0.00 0.00 5.01
6152 9417 2.578021 ACATCATAGCACCCCTGAAACT 59.422 45.455 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.