Multiple sequence alignment - TraesCS3B01G165400
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G165400 | chr3B | 100.000 | 5921 | 0 | 0 | 1 | 5921 | 163665980 | 163660060 | 0.000000e+00 | 10935 |
1 | TraesCS3B01G165400 | chr3D | 93.651 | 3166 | 133 | 30 | 2804 | 5919 | 112696532 | 112693385 | 0.000000e+00 | 4671 |
2 | TraesCS3B01G165400 | chr3D | 88.058 | 2395 | 153 | 52 | 23 | 2326 | 112699638 | 112697286 | 0.000000e+00 | 2715 |
3 | TraesCS3B01G165400 | chr3D | 84.304 | 395 | 35 | 19 | 2340 | 2730 | 112696902 | 112696531 | 1.570000e-95 | 361 |
4 | TraesCS3B01G165400 | chr3A | 93.356 | 873 | 49 | 6 | 3291 | 4155 | 108378134 | 108377263 | 0.000000e+00 | 1282 |
5 | TraesCS3B01G165400 | chr3A | 91.381 | 905 | 59 | 13 | 4192 | 5095 | 108377179 | 108376293 | 0.000000e+00 | 1221 |
6 | TraesCS3B01G165400 | chr3A | 93.064 | 793 | 38 | 13 | 676 | 1457 | 108381220 | 108380434 | 0.000000e+00 | 1144 |
7 | TraesCS3B01G165400 | chr3A | 84.406 | 917 | 80 | 23 | 1459 | 2326 | 108380399 | 108379497 | 0.000000e+00 | 843 |
8 | TraesCS3B01G165400 | chr3A | 84.666 | 763 | 76 | 18 | 5184 | 5921 | 108375957 | 108375211 | 0.000000e+00 | 723 |
9 | TraesCS3B01G165400 | chr3A | 86.892 | 473 | 35 | 10 | 2774 | 3221 | 108378618 | 108378148 | 6.850000e-139 | 505 |
10 | TraesCS3B01G165400 | chr7D | 87.354 | 427 | 26 | 8 | 2915 | 3340 | 453305509 | 453305908 | 1.160000e-126 | 464 |
11 | TraesCS3B01G165400 | chr7D | 75.862 | 232 | 35 | 15 | 1196 | 1406 | 60079481 | 60079712 | 1.360000e-16 | 99 |
12 | TraesCS3B01G165400 | chr2D | 87.294 | 425 | 26 | 8 | 2915 | 3338 | 442449190 | 442449587 | 1.500000e-125 | 460 |
13 | TraesCS3B01G165400 | chr7B | 78.526 | 475 | 92 | 10 | 3635 | 4107 | 2494275 | 2494741 | 2.680000e-78 | 303 |
14 | TraesCS3B01G165400 | chr7B | 78.105 | 475 | 95 | 9 | 3635 | 4107 | 2512627 | 2513094 | 5.800000e-75 | 292 |
15 | TraesCS3B01G165400 | chr7A | 75.983 | 229 | 37 | 12 | 1196 | 1406 | 64466099 | 64466327 | 1.050000e-17 | 102 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS3B01G165400 | chr3B | 163660060 | 163665980 | 5920 | True | 10935.000000 | 10935 | 100.000000 | 1 | 5921 | 1 | chr3B.!!$R1 | 5920 |
1 | TraesCS3B01G165400 | chr3D | 112693385 | 112699638 | 6253 | True | 2582.333333 | 4671 | 88.671000 | 23 | 5919 | 3 | chr3D.!!$R1 | 5896 |
2 | TraesCS3B01G165400 | chr3A | 108375211 | 108381220 | 6009 | True | 953.000000 | 1282 | 88.960833 | 676 | 5921 | 6 | chr3A.!!$R1 | 5245 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
326 | 336 | 0.106268 | TGGAGCACCAGCCAAGAAAA | 60.106 | 50.000 | 0.00 | 0.0 | 41.77 | 2.29 | F |
348 | 358 | 0.525761 | GCCTACATTTTGCTTCCGCA | 59.474 | 50.000 | 0.00 | 0.0 | 46.24 | 5.69 | F |
409 | 424 | 0.528017 | TGAACTGAGCTGAGTAGGCG | 59.472 | 55.000 | 6.17 | 0.0 | 34.52 | 5.52 | F |
1911 | 2054 | 0.548031 | TATGCCCTGCTTTCTCTGGG | 59.452 | 55.000 | 0.00 | 0.0 | 45.09 | 4.45 | F |
2055 | 2201 | 0.675208 | TTGTCCGCCGCACACATAAT | 60.675 | 50.000 | 0.00 | 0.0 | 0.00 | 1.28 | F |
2854 | 3538 | 0.720027 | CTGATGCTCTGCTCACAACG | 59.280 | 55.000 | 0.00 | 0.0 | 0.00 | 4.10 | F |
3021 | 3728 | 1.550524 | CAAAGTCAGGTCCTCATCGGA | 59.449 | 52.381 | 0.00 | 0.0 | 40.30 | 4.55 | F |
3253 | 3961 | 1.931906 | ATGCAGTACGATGCTGTCAG | 58.068 | 50.000 | 8.39 | 0.0 | 46.63 | 3.51 | F |
4263 | 5033 | 2.159085 | AGATAGGCACTTACCGAGTTGC | 60.159 | 50.000 | 0.00 | 0.0 | 41.75 | 4.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2205 | 2363 | 0.034756 | CCATCACCAAGACACCGACA | 59.965 | 55.000 | 0.00 | 0.0 | 0.00 | 4.35 | R |
2206 | 2364 | 0.673644 | CCCATCACCAAGACACCGAC | 60.674 | 60.000 | 0.00 | 0.0 | 0.00 | 4.79 | R |
2247 | 2411 | 3.449737 | CCGACTAATAGAACACCTTCCCA | 59.550 | 47.826 | 0.00 | 0.0 | 0.00 | 4.37 | R |
3461 | 4170 | 0.839946 | ATGAAGCGATTAGGGCCAGT | 59.160 | 50.000 | 6.18 | 0.0 | 0.00 | 4.00 | R |
3592 | 4301 | 2.297033 | GCTGGAAAACCTGATGCAAAGA | 59.703 | 45.455 | 0.00 | 0.0 | 0.00 | 2.52 | R |
4245 | 5011 | 0.248289 | GGCAACTCGGTAAGTGCCTA | 59.752 | 55.000 | 6.28 | 0.0 | 43.32 | 3.93 | R |
4246 | 5012 | 1.003718 | GGCAACTCGGTAAGTGCCT | 60.004 | 57.895 | 6.28 | 0.0 | 43.32 | 4.75 | R |
4803 | 5590 | 1.048601 | TCCGGAAGCTTGTGAAGAGT | 58.951 | 50.000 | 2.10 | 0.0 | 0.00 | 3.24 | R |
5649 | 6763 | 0.467290 | TGTGGAAGGGCTGACCAAAC | 60.467 | 55.000 | 0.47 | 0.0 | 43.89 | 2.93 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 4.452733 | AGCAACCGGTAGGAGCGC | 62.453 | 66.667 | 8.00 | 0.00 | 43.26 | 5.92 |
18 | 19 | 4.452733 | GCAACCGGTAGGAGCGCT | 62.453 | 66.667 | 11.27 | 11.27 | 41.02 | 5.92 |
19 | 20 | 2.509336 | CAACCGGTAGGAGCGCTG | 60.509 | 66.667 | 18.48 | 0.00 | 41.02 | 5.18 |
20 | 21 | 4.452733 | AACCGGTAGGAGCGCTGC | 62.453 | 66.667 | 22.65 | 22.65 | 41.02 | 5.25 |
23 | 24 | 4.148825 | CGGTAGGAGCGCTGCCTT | 62.149 | 66.667 | 26.33 | 10.85 | 36.96 | 4.35 |
24 | 25 | 2.202946 | GGTAGGAGCGCTGCCTTC | 60.203 | 66.667 | 26.33 | 21.14 | 36.96 | 3.46 |
25 | 26 | 2.726351 | GGTAGGAGCGCTGCCTTCT | 61.726 | 63.158 | 26.33 | 9.63 | 36.96 | 2.85 |
26 | 27 | 1.392710 | GGTAGGAGCGCTGCCTTCTA | 61.393 | 60.000 | 26.33 | 8.49 | 36.96 | 2.10 |
27 | 28 | 0.460311 | GTAGGAGCGCTGCCTTCTAA | 59.540 | 55.000 | 26.33 | 8.45 | 36.96 | 2.10 |
28 | 29 | 1.134788 | GTAGGAGCGCTGCCTTCTAAA | 60.135 | 52.381 | 26.33 | 8.10 | 36.96 | 1.85 |
29 | 30 | 0.391793 | AGGAGCGCTGCCTTCTAAAC | 60.392 | 55.000 | 26.33 | 0.46 | 29.44 | 2.01 |
30 | 31 | 0.673644 | GGAGCGCTGCCTTCTAAACA | 60.674 | 55.000 | 18.48 | 0.00 | 0.00 | 2.83 |
31 | 32 | 1.373570 | GAGCGCTGCCTTCTAAACAT | 58.626 | 50.000 | 18.48 | 0.00 | 0.00 | 2.71 |
32 | 33 | 1.740025 | GAGCGCTGCCTTCTAAACATT | 59.260 | 47.619 | 18.48 | 0.00 | 0.00 | 2.71 |
33 | 34 | 1.740025 | AGCGCTGCCTTCTAAACATTC | 59.260 | 47.619 | 10.39 | 0.00 | 0.00 | 2.67 |
51 | 52 | 8.936070 | AAACATTCCACATGATGTAAATGATG | 57.064 | 30.769 | 26.39 | 16.48 | 36.75 | 3.07 |
54 | 55 | 7.776500 | ACATTCCACATGATGTAAATGATGAGA | 59.224 | 33.333 | 26.39 | 0.00 | 36.75 | 3.27 |
56 | 57 | 6.057533 | TCCACATGATGTAAATGATGAGACC | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
58 | 59 | 5.525012 | CACATGATGTAAATGATGAGACCGT | 59.475 | 40.000 | 0.00 | 0.00 | 0.00 | 4.83 |
73 | 74 | 3.726517 | CGTTGTGGCGCCTCTTGG | 61.727 | 66.667 | 29.70 | 12.90 | 0.00 | 3.61 |
134 | 135 | 1.455822 | TCAATGGGGGTGGAAGAAGT | 58.544 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
139 | 140 | 1.152830 | GGGGTGGAAGAAGTGGCAA | 59.847 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
147 | 148 | 3.181440 | TGGAAGAAGTGGCAAGATTCTGT | 60.181 | 43.478 | 10.53 | 3.49 | 33.67 | 3.41 |
151 | 152 | 3.326006 | AGAAGTGGCAAGATTCTGTCTCA | 59.674 | 43.478 | 9.35 | 0.00 | 35.67 | 3.27 |
164 | 165 | 4.277515 | TCTGTCTCAAATTGACTCCCTG | 57.722 | 45.455 | 0.00 | 0.00 | 35.63 | 4.45 |
167 | 168 | 1.988107 | TCTCAAATTGACTCCCTGCCT | 59.012 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
176 | 177 | 3.005539 | TCCCTGCCTGGAGAGCAC | 61.006 | 66.667 | 0.00 | 0.00 | 38.35 | 4.40 |
210 | 211 | 1.595357 | CACGGTGAAGGGGTAGTCC | 59.405 | 63.158 | 0.74 | 0.00 | 0.00 | 3.85 |
218 | 219 | 3.056035 | GTGAAGGGGTAGTCCTTACACAG | 60.056 | 52.174 | 14.91 | 0.00 | 46.31 | 3.66 |
220 | 221 | 0.540454 | GGGGTAGTCCTTACACAGGC | 59.460 | 60.000 | 0.00 | 0.00 | 43.55 | 4.85 |
316 | 326 | 1.347707 | GGATCCGATTATGGAGCACCA | 59.652 | 52.381 | 4.98 | 4.98 | 46.29 | 4.17 |
324 | 334 | 3.249805 | TGGAGCACCAGCCAAGAA | 58.750 | 55.556 | 0.00 | 0.00 | 41.77 | 2.52 |
325 | 335 | 1.536180 | TGGAGCACCAGCCAAGAAA | 59.464 | 52.632 | 0.00 | 0.00 | 41.77 | 2.52 |
326 | 336 | 0.106268 | TGGAGCACCAGCCAAGAAAA | 60.106 | 50.000 | 0.00 | 0.00 | 41.77 | 2.29 |
341 | 351 | 4.925646 | CCAAGAAAAGAGCCTACATTTTGC | 59.074 | 41.667 | 0.00 | 0.00 | 0.00 | 3.68 |
346 | 356 | 2.359900 | AGAGCCTACATTTTGCTTCCG | 58.640 | 47.619 | 0.00 | 0.00 | 34.99 | 4.30 |
347 | 357 | 0.811281 | AGCCTACATTTTGCTTCCGC | 59.189 | 50.000 | 0.00 | 0.00 | 29.17 | 5.54 |
348 | 358 | 0.525761 | GCCTACATTTTGCTTCCGCA | 59.474 | 50.000 | 0.00 | 0.00 | 46.24 | 5.69 |
380 | 395 | 4.212847 | CCATATCTGTCTCGAATTTGCCAG | 59.787 | 45.833 | 0.00 | 0.00 | 0.00 | 4.85 |
383 | 398 | 0.690192 | TGTCTCGAATTTGCCAGGGA | 59.310 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
396 | 411 | 1.959042 | CCAGGGAATCCGATGAACTG | 58.041 | 55.000 | 4.88 | 0.09 | 38.33 | 3.16 |
400 | 415 | 1.139853 | GGGAATCCGATGAACTGAGCT | 59.860 | 52.381 | 0.00 | 0.00 | 0.00 | 4.09 |
409 | 424 | 0.528017 | TGAACTGAGCTGAGTAGGCG | 59.472 | 55.000 | 6.17 | 0.00 | 34.52 | 5.52 |
429 | 446 | 1.028905 | GAGCTCACATAGTCTCCGCT | 58.971 | 55.000 | 9.40 | 0.00 | 0.00 | 5.52 |
445 | 462 | 1.380380 | GCTGGGGGTCCAAATCCAG | 60.380 | 63.158 | 12.67 | 12.67 | 46.93 | 3.86 |
462 | 479 | 1.760086 | AGGAGATGGAGTCTGGGCG | 60.760 | 63.158 | 0.00 | 0.00 | 37.29 | 6.13 |
471 | 488 | 1.946475 | GAGTCTGGGCGTAGGGTGTC | 61.946 | 65.000 | 0.00 | 0.00 | 0.00 | 3.67 |
543 | 582 | 8.627487 | TTTTGACATGATTGTGTTTAGTGAAC | 57.373 | 30.769 | 0.00 | 0.00 | 35.79 | 3.18 |
545 | 584 | 5.825151 | TGACATGATTGTGTTTAGTGAACCA | 59.175 | 36.000 | 0.00 | 0.00 | 37.45 | 3.67 |
550 | 589 | 7.867305 | TGATTGTGTTTAGTGAACCAACTTA | 57.133 | 32.000 | 0.00 | 0.00 | 37.45 | 2.24 |
552 | 591 | 8.349245 | TGATTGTGTTTAGTGAACCAACTTATG | 58.651 | 33.333 | 0.00 | 0.00 | 37.45 | 1.90 |
568 | 607 | 6.992715 | CCAACTTATGGTTAGATGGTTAGGAG | 59.007 | 42.308 | 0.00 | 0.00 | 44.85 | 3.69 |
571 | 610 | 2.463752 | TGGTTAGATGGTTAGGAGCGT | 58.536 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
574 | 613 | 3.369157 | GGTTAGATGGTTAGGAGCGTGTT | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
576 | 615 | 2.180276 | AGATGGTTAGGAGCGTGTTCT | 58.820 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
577 | 616 | 3.362706 | AGATGGTTAGGAGCGTGTTCTA | 58.637 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
613 | 667 | 8.954950 | TGATTGTGTTCATAATTTTGGTGTTT | 57.045 | 26.923 | 0.00 | 0.00 | 0.00 | 2.83 |
644 | 701 | 4.022849 | AGCTAGGTTGCAATTTTGTGAGTC | 60.023 | 41.667 | 0.59 | 0.00 | 34.99 | 3.36 |
651 | 708 | 2.156891 | GCAATTTTGTGAGTCGAGCGTA | 59.843 | 45.455 | 0.00 | 0.00 | 0.00 | 4.42 |
652 | 709 | 3.722123 | CAATTTTGTGAGTCGAGCGTAC | 58.278 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
658 | 715 | 0.956633 | TGAGTCGAGCGTACAAAGGT | 59.043 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
709 | 766 | 9.140286 | GGAAAGAATATTTACAGCTCCAAAAAC | 57.860 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
712 | 769 | 7.602753 | AGAATATTTACAGCTCCAAAAACACC | 58.397 | 34.615 | 0.00 | 0.00 | 0.00 | 4.16 |
781 | 847 | 7.670605 | ATCATCATGGTTGGATTCTTTGAAT | 57.329 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
783 | 849 | 5.664294 | TCATGGTTGGATTCTTTGAATGG | 57.336 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
844 | 912 | 4.999524 | GCCACATGGATCCCAAAAGGAAG | 62.000 | 52.174 | 9.90 | 0.00 | 41.62 | 3.46 |
1302 | 1374 | 4.980805 | GCGGCCACGTTCCTGTCA | 62.981 | 66.667 | 2.24 | 0.00 | 43.45 | 3.58 |
1368 | 1440 | 2.621115 | GGCCTCCTCCTCCCCATA | 59.379 | 66.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1441 | 1513 | 7.172342 | TGCTTCCTTGCTTAAATTCTACCTAA | 58.828 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
1443 | 1515 | 7.553044 | GCTTCCTTGCTTAAATTCTACCTAAGA | 59.447 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
1445 | 1517 | 7.913789 | TCCTTGCTTAAATTCTACCTAAGACA | 58.086 | 34.615 | 0.00 | 0.00 | 32.51 | 3.41 |
1448 | 1520 | 6.412214 | TGCTTAAATTCTACCTAAGACACCC | 58.588 | 40.000 | 0.00 | 0.00 | 32.51 | 4.61 |
1507 | 1612 | 4.186926 | TCTGAAGGAGAGAATGATTTGCG | 58.813 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
1540 | 1645 | 4.158209 | ACTCCCGAGCTACTCTTTAGAAAC | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 2.78 |
1620 | 1726 | 3.443681 | AGCAAATCCTCCCGTTTATGTTG | 59.556 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
1623 | 1729 | 0.988832 | TCCTCCCGTTTATGTTGGCT | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
1626 | 1732 | 2.618045 | CCTCCCGTTTATGTTGGCTCTT | 60.618 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1640 | 1746 | 3.074412 | TGGCTCTTTTCGGTTCTTGATC | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
1697 | 1805 | 4.321718 | TGGATCAGAGCATAATAAGCTGC | 58.678 | 43.478 | 0.00 | 0.00 | 43.58 | 5.25 |
1715 | 1823 | 1.109323 | GCTGTATGACCCCCATTGGC | 61.109 | 60.000 | 0.00 | 0.00 | 36.71 | 4.52 |
1716 | 1824 | 0.819259 | CTGTATGACCCCCATTGGCG | 60.819 | 60.000 | 0.00 | 0.00 | 36.71 | 5.69 |
1787 | 1914 | 1.153706 | GTTGGCACATGCATGGCTC | 60.154 | 57.895 | 29.41 | 20.67 | 45.16 | 4.70 |
1801 | 1928 | 3.420893 | CATGGCTCAACCCAAAAGTAGA | 58.579 | 45.455 | 0.00 | 0.00 | 38.61 | 2.59 |
1818 | 1958 | 9.720769 | CAAAAGTAGACTATTTGGAGACCTTTA | 57.279 | 33.333 | 1.97 | 0.00 | 31.93 | 1.85 |
1881 | 2024 | 2.280524 | CGCCCACGGACAAACAGA | 60.281 | 61.111 | 0.00 | 0.00 | 34.97 | 3.41 |
1911 | 2054 | 0.548031 | TATGCCCTGCTTTCTCTGGG | 59.452 | 55.000 | 0.00 | 0.00 | 45.09 | 4.45 |
1915 | 2058 | 1.211456 | CCCTGCTTTCTCTGGGATCT | 58.789 | 55.000 | 0.01 | 0.00 | 45.12 | 2.75 |
1923 | 2066 | 1.475403 | TCTCTGGGATCTGTCGGTTC | 58.525 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1928 | 2071 | 3.772572 | TCTGGGATCTGTCGGTTCATTAA | 59.227 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
1932 | 2075 | 4.941873 | GGGATCTGTCGGTTCATTAACTTT | 59.058 | 41.667 | 0.00 | 0.00 | 35.81 | 2.66 |
1960 | 2103 | 5.941948 | AAGTTTCACCAGTATACTTGTGC | 57.058 | 39.130 | 25.21 | 15.17 | 38.90 | 4.57 |
1995 | 2140 | 5.104277 | TGACTTTCCCCACTTTCTGTTCTAA | 60.104 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1996 | 2141 | 5.762279 | ACTTTCCCCACTTTCTGTTCTAAA | 58.238 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
2042 | 2188 | 6.616947 | TGCATAATTTACCTTTCTTTGTCCG | 58.383 | 36.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2044 | 2190 | 4.514781 | AATTTACCTTTCTTTGTCCGCC | 57.485 | 40.909 | 0.00 | 0.00 | 0.00 | 6.13 |
2046 | 2192 | 0.952010 | TACCTTTCTTTGTCCGCCGC | 60.952 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
2047 | 2193 | 2.258013 | CCTTTCTTTGTCCGCCGCA | 61.258 | 57.895 | 0.00 | 0.00 | 0.00 | 5.69 |
2055 | 2201 | 0.675208 | TTGTCCGCCGCACACATAAT | 60.675 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2095 | 2242 | 5.578727 | TCGAGCTGCTTTTCTCTCTAATTTC | 59.421 | 40.000 | 2.53 | 0.00 | 0.00 | 2.17 |
2137 | 2284 | 9.498307 | CTTTGATCGGTATTTTTGTATGGTAAC | 57.502 | 33.333 | 0.00 | 0.00 | 0.00 | 2.50 |
2184 | 2331 | 7.077605 | GCTTTTGAAATATTGTGGGAAAAAGC | 58.922 | 34.615 | 17.27 | 17.27 | 46.05 | 3.51 |
2185 | 2332 | 6.777526 | TTTGAAATATTGTGGGAAAAAGCG | 57.222 | 33.333 | 0.00 | 0.00 | 0.00 | 4.68 |
2186 | 2333 | 4.241681 | TGAAATATTGTGGGAAAAAGCGC | 58.758 | 39.130 | 0.00 | 0.00 | 0.00 | 5.92 |
2188 | 2335 | 1.621992 | TATTGTGGGAAAAAGCGCCA | 58.378 | 45.000 | 2.29 | 0.00 | 0.00 | 5.69 |
2205 | 2363 | 2.545526 | CGCCATAGTTCGCTGATCAATT | 59.454 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
2206 | 2364 | 3.605461 | CGCCATAGTTCGCTGATCAATTG | 60.605 | 47.826 | 0.00 | 0.00 | 0.00 | 2.32 |
2247 | 2411 | 7.302948 | TGGGTAGGTATCATCACTAGTGTATT | 58.697 | 38.462 | 21.99 | 6.36 | 0.00 | 1.89 |
2248 | 2412 | 7.232737 | TGGGTAGGTATCATCACTAGTGTATTG | 59.767 | 40.741 | 21.99 | 17.00 | 0.00 | 1.90 |
2250 | 2414 | 6.672266 | AGGTATCATCACTAGTGTATTGGG | 57.328 | 41.667 | 21.99 | 7.19 | 0.00 | 4.12 |
2277 | 2441 | 6.435277 | AGGTGTTCTATTAGTCGGTCAGTTAA | 59.565 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
2282 | 2446 | 7.876936 | TCTATTAGTCGGTCAGTTAATCAGT | 57.123 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2284 | 2448 | 8.188799 | TCTATTAGTCGGTCAGTTAATCAGTTG | 58.811 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2285 | 2449 | 3.926616 | AGTCGGTCAGTTAATCAGTTGG | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
2319 | 2483 | 9.689976 | CAGTTAATTGTTTTGTGATATTGTGGA | 57.310 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
2326 | 2490 | 6.072948 | TGTTTTGTGATATTGTGGAACGGTAG | 60.073 | 38.462 | 0.00 | 0.00 | 42.39 | 3.18 |
2327 | 2491 | 4.811969 | TGTGATATTGTGGAACGGTAGT | 57.188 | 40.909 | 0.00 | 0.00 | 42.39 | 2.73 |
2328 | 2492 | 5.918426 | TGTGATATTGTGGAACGGTAGTA | 57.082 | 39.130 | 0.00 | 0.00 | 42.39 | 1.82 |
2330 | 2494 | 5.419788 | TGTGATATTGTGGAACGGTAGTACT | 59.580 | 40.000 | 0.00 | 0.00 | 42.39 | 2.73 |
2331 | 2495 | 6.602803 | TGTGATATTGTGGAACGGTAGTACTA | 59.397 | 38.462 | 0.00 | 0.00 | 42.39 | 1.82 |
2332 | 2496 | 6.914757 | GTGATATTGTGGAACGGTAGTACTAC | 59.085 | 42.308 | 22.53 | 22.53 | 42.39 | 2.73 |
2333 | 2497 | 6.602803 | TGATATTGTGGAACGGTAGTACTACA | 59.397 | 38.462 | 29.38 | 10.58 | 42.39 | 2.74 |
2334 | 2498 | 5.927281 | ATTGTGGAACGGTAGTACTACAT | 57.073 | 39.130 | 29.38 | 16.96 | 42.39 | 2.29 |
2335 | 2499 | 4.970662 | TGTGGAACGGTAGTACTACATC | 57.029 | 45.455 | 29.38 | 22.88 | 42.39 | 3.06 |
2338 | 2502 | 6.121590 | TGTGGAACGGTAGTACTACATCATA | 58.878 | 40.000 | 29.38 | 16.22 | 42.39 | 2.15 |
2389 | 2923 | 4.574674 | TGCATGTATCAGAAAGGACCTT | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
2408 | 2942 | 8.118600 | AGGACCTTATTTCTCCAAAGATCAAAT | 58.881 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
2421 | 2955 | 4.591321 | AGATCAAATGCAAGGTTCCCTA | 57.409 | 40.909 | 0.00 | 0.00 | 31.13 | 3.53 |
2422 | 2956 | 5.134725 | AGATCAAATGCAAGGTTCCCTAT | 57.865 | 39.130 | 0.00 | 0.00 | 31.13 | 2.57 |
2435 | 2969 | 8.914011 | GCAAGGTTCCCTATTGAAATAAGTTAT | 58.086 | 33.333 | 0.00 | 0.00 | 31.13 | 1.89 |
2507 | 3159 | 9.088512 | CATTAGTAAAGGCTAGTACAAAGACAG | 57.911 | 37.037 | 10.03 | 0.00 | 0.00 | 3.51 |
2573 | 3230 | 2.298729 | ACATAACACGGCTGCCAATTTT | 59.701 | 40.909 | 20.29 | 7.94 | 0.00 | 1.82 |
2584 | 3241 | 5.687285 | CGGCTGCCAATTTTCTACATTATTC | 59.313 | 40.000 | 20.29 | 0.00 | 0.00 | 1.75 |
2588 | 3245 | 7.646922 | GCTGCCAATTTTCTACATTATTCTCAG | 59.353 | 37.037 | 0.00 | 0.00 | 0.00 | 3.35 |
2591 | 3248 | 8.677300 | GCCAATTTTCTACATTATTCTCAGTGA | 58.323 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2636 | 3293 | 9.778993 | AATTGATCACTTCTAAATTCAACATCG | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 3.84 |
2638 | 3295 | 7.963981 | TGATCACTTCTAAATTCAACATCGTC | 58.036 | 34.615 | 0.00 | 0.00 | 0.00 | 4.20 |
2641 | 3298 | 8.322906 | TCACTTCTAAATTCAACATCGTCAAT | 57.677 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
2680 | 3364 | 4.974645 | AAATGGTGTACTTCTCCTGTGA | 57.025 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
2700 | 3384 | 5.698089 | TGTGATCACTTCAAAGACTAGCTTG | 59.302 | 40.000 | 25.55 | 0.00 | 36.80 | 4.01 |
2709 | 3393 | 5.710984 | TCAAAGACTAGCTTGCTACAGTAC | 58.289 | 41.667 | 0.00 | 0.00 | 36.80 | 2.73 |
2710 | 3394 | 5.477291 | TCAAAGACTAGCTTGCTACAGTACT | 59.523 | 40.000 | 0.00 | 0.00 | 36.80 | 2.73 |
2712 | 3396 | 5.317733 | AGACTAGCTTGCTACAGTACTTG | 57.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2716 | 3400 | 5.696724 | ACTAGCTTGCTACAGTACTTGTTTG | 59.303 | 40.000 | 0.00 | 0.00 | 41.29 | 2.93 |
2717 | 3401 | 3.251004 | AGCTTGCTACAGTACTTGTTTGC | 59.749 | 43.478 | 0.00 | 4.78 | 41.29 | 3.68 |
2718 | 3402 | 3.003275 | GCTTGCTACAGTACTTGTTTGCA | 59.997 | 43.478 | 14.90 | 14.90 | 42.28 | 4.08 |
2719 | 3403 | 4.527564 | CTTGCTACAGTACTTGTTTGCAC | 58.472 | 43.478 | 16.79 | 0.00 | 43.04 | 4.57 |
2720 | 3404 | 3.536570 | TGCTACAGTACTTGTTTGCACA | 58.463 | 40.909 | 14.90 | 0.00 | 40.54 | 4.57 |
2721 | 3405 | 4.133820 | TGCTACAGTACTTGTTTGCACAT | 58.866 | 39.130 | 14.90 | 0.00 | 40.54 | 3.21 |
2722 | 3406 | 4.578516 | TGCTACAGTACTTGTTTGCACATT | 59.421 | 37.500 | 14.90 | 0.00 | 40.54 | 2.71 |
2723 | 3407 | 5.147162 | GCTACAGTACTTGTTTGCACATTC | 58.853 | 41.667 | 0.00 | 0.00 | 41.29 | 2.67 |
2724 | 3408 | 5.049405 | GCTACAGTACTTGTTTGCACATTCT | 60.049 | 40.000 | 0.00 | 0.00 | 41.29 | 2.40 |
2725 | 3409 | 5.835113 | ACAGTACTTGTTTGCACATTCTT | 57.165 | 34.783 | 0.00 | 0.00 | 36.31 | 2.52 |
2726 | 3410 | 6.935741 | ACAGTACTTGTTTGCACATTCTTA | 57.064 | 33.333 | 0.00 | 0.00 | 36.31 | 2.10 |
2731 | 3415 | 5.591099 | ACTTGTTTGCACATTCTTACTTGG | 58.409 | 37.500 | 0.00 | 0.00 | 31.06 | 3.61 |
2738 | 3422 | 6.325919 | TGCACATTCTTACTTGGGTTTTAG | 57.674 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
2749 | 3433 | 8.634335 | TTACTTGGGTTTTAGGTGGTATAAAC | 57.366 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2750 | 3434 | 6.612741 | ACTTGGGTTTTAGGTGGTATAAACA | 58.387 | 36.000 | 0.00 | 0.00 | 33.33 | 2.83 |
2751 | 3435 | 7.243091 | ACTTGGGTTTTAGGTGGTATAAACAT | 58.757 | 34.615 | 0.00 | 0.00 | 33.33 | 2.71 |
2752 | 3436 | 7.731235 | ACTTGGGTTTTAGGTGGTATAAACATT | 59.269 | 33.333 | 0.00 | 0.00 | 33.33 | 2.71 |
2753 | 3437 | 8.493787 | TTGGGTTTTAGGTGGTATAAACATTT | 57.506 | 30.769 | 0.00 | 0.00 | 33.33 | 2.32 |
2754 | 3438 | 7.897864 | TGGGTTTTAGGTGGTATAAACATTTG | 58.102 | 34.615 | 0.00 | 0.00 | 33.33 | 2.32 |
2755 | 3439 | 7.509659 | TGGGTTTTAGGTGGTATAAACATTTGT | 59.490 | 33.333 | 0.00 | 0.00 | 33.33 | 2.83 |
2756 | 3440 | 9.022884 | GGGTTTTAGGTGGTATAAACATTTGTA | 57.977 | 33.333 | 0.00 | 0.00 | 33.33 | 2.41 |
2788 | 3472 | 8.729805 | TTTTTGCACATTCTTACTTGGATTTT | 57.270 | 26.923 | 0.00 | 0.00 | 0.00 | 1.82 |
2789 | 3473 | 9.823647 | TTTTTGCACATTCTTACTTGGATTTTA | 57.176 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
2790 | 3474 | 9.474920 | TTTTGCACATTCTTACTTGGATTTTAG | 57.525 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
2791 | 3475 | 7.156876 | TGCACATTCTTACTTGGATTTTAGG | 57.843 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2792 | 3476 | 6.719370 | TGCACATTCTTACTTGGATTTTAGGT | 59.281 | 34.615 | 0.00 | 0.00 | 0.00 | 3.08 |
2793 | 3477 | 7.029563 | GCACATTCTTACTTGGATTTTAGGTG | 58.970 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
2794 | 3478 | 7.538575 | CACATTCTTACTTGGATTTTAGGTGG | 58.461 | 38.462 | 0.00 | 0.00 | 0.00 | 4.61 |
2795 | 3479 | 7.176690 | CACATTCTTACTTGGATTTTAGGTGGT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 4.16 |
2796 | 3480 | 8.387813 | ACATTCTTACTTGGATTTTAGGTGGTA | 58.612 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
2797 | 3481 | 9.408648 | CATTCTTACTTGGATTTTAGGTGGTAT | 57.591 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
2798 | 3482 | 8.801882 | TTCTTACTTGGATTTTAGGTGGTATG | 57.198 | 34.615 | 0.00 | 0.00 | 0.00 | 2.39 |
2799 | 3483 | 8.153221 | TCTTACTTGGATTTTAGGTGGTATGA | 57.847 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
2804 | 3488 | 7.673926 | ACTTGGATTTTAGGTGGTATGAACATT | 59.326 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
2814 | 3498 | 7.826690 | AGGTGGTATGAACATTTTTATGTGAC | 58.173 | 34.615 | 0.00 | 0.00 | 34.56 | 3.67 |
2815 | 3499 | 7.450014 | AGGTGGTATGAACATTTTTATGTGACA | 59.550 | 33.333 | 0.00 | 0.00 | 34.56 | 3.58 |
2854 | 3538 | 0.720027 | CTGATGCTCTGCTCACAACG | 59.280 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
2885 | 3569 | 6.412214 | TGATGGTCCATATGCTAGAATCATG | 58.588 | 40.000 | 3.72 | 0.00 | 0.00 | 3.07 |
2910 | 3617 | 9.618890 | TGAAGCTATTTAATTTCTATGCAGACT | 57.381 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
2912 | 3619 | 7.869800 | AGCTATTTAATTTCTATGCAGACTGC | 58.130 | 34.615 | 20.86 | 20.86 | 45.29 | 4.40 |
2924 | 3631 | 2.097160 | GACTGCGCTTGATGCACG | 59.903 | 61.111 | 9.73 | 0.00 | 43.06 | 5.34 |
3021 | 3728 | 1.550524 | CAAAGTCAGGTCCTCATCGGA | 59.449 | 52.381 | 0.00 | 0.00 | 40.30 | 4.55 |
3111 | 3818 | 3.244181 | GCAAGTGTGATGTTGGGGAAAAT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3166 | 3873 | 2.977405 | CAGCTTGACTGGTAAGTTGC | 57.023 | 50.000 | 0.00 | 0.00 | 43.19 | 4.17 |
3170 | 3877 | 2.851195 | CTTGACTGGTAAGTTGCCACT | 58.149 | 47.619 | 8.83 | 0.00 | 36.52 | 4.00 |
3183 | 3890 | 5.932619 | AGTTGCCACTCTGTATGTATGTA | 57.067 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
3224 | 3932 | 7.388776 | TCTGAAGATTTCTGATACTTGGTTGTG | 59.611 | 37.037 | 0.00 | 0.00 | 33.45 | 3.33 |
3240 | 3948 | 6.398234 | TGGTTGTGTTGTAAATTATGCAGT | 57.602 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
3242 | 3950 | 7.364200 | TGGTTGTGTTGTAAATTATGCAGTAC | 58.636 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
3243 | 3951 | 6.521821 | GGTTGTGTTGTAAATTATGCAGTACG | 59.478 | 38.462 | 0.00 | 0.00 | 0.00 | 3.67 |
3247 | 3955 | 6.410914 | GTGTTGTAAATTATGCAGTACGATGC | 59.589 | 38.462 | 0.27 | 0.27 | 46.68 | 3.91 |
3253 | 3961 | 1.931906 | ATGCAGTACGATGCTGTCAG | 58.068 | 50.000 | 8.39 | 0.00 | 46.63 | 3.51 |
3267 | 3976 | 6.401047 | CGATGCTGTCAGTTTTATCTCGAAAA | 60.401 | 38.462 | 0.93 | 0.00 | 0.00 | 2.29 |
3272 | 3981 | 8.656849 | GCTGTCAGTTTTATCTCGAAAAGAATA | 58.343 | 33.333 | 0.93 | 0.00 | 37.61 | 1.75 |
3279 | 3988 | 9.052080 | GTTTTATCTCGAAAAGAATACAACAGC | 57.948 | 33.333 | 0.00 | 0.00 | 37.61 | 4.40 |
3280 | 3989 | 8.547967 | TTTATCTCGAAAAGAATACAACAGCT | 57.452 | 30.769 | 0.00 | 0.00 | 37.61 | 4.24 |
3281 | 3990 | 6.654793 | ATCTCGAAAAGAATACAACAGCTC | 57.345 | 37.500 | 0.00 | 0.00 | 37.61 | 4.09 |
3359 | 4068 | 4.549458 | GCATTACAACTGATGTGCAAACT | 58.451 | 39.130 | 0.34 | 0.00 | 43.77 | 2.66 |
3365 | 4074 | 4.452455 | ACAACTGATGTGCAAACTAGCTAC | 59.548 | 41.667 | 0.00 | 0.00 | 41.93 | 3.58 |
3496 | 4205 | 3.614616 | GCTTCATTCTCACTTGTACTCGG | 59.385 | 47.826 | 0.00 | 0.00 | 0.00 | 4.63 |
3568 | 4277 | 5.815740 | GCTGCAAATGATGAAAAGATTGGAT | 59.184 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3642 | 4354 | 2.961741 | TCAGAAGAGGAAGCTCGCATAT | 59.038 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
4139 | 4855 | 9.117183 | GTTTATTTACTTCCGATCCCTGTAAAT | 57.883 | 33.333 | 17.13 | 17.13 | 42.60 | 1.40 |
4243 | 5009 | 4.710528 | GTGTAACTTGGACACGAAAGAG | 57.289 | 45.455 | 0.00 | 0.00 | 38.01 | 2.85 |
4244 | 5010 | 4.365723 | GTGTAACTTGGACACGAAAGAGA | 58.634 | 43.478 | 0.00 | 0.00 | 38.01 | 3.10 |
4245 | 5011 | 4.989168 | GTGTAACTTGGACACGAAAGAGAT | 59.011 | 41.667 | 0.00 | 0.00 | 38.01 | 2.75 |
4246 | 5012 | 6.154445 | GTGTAACTTGGACACGAAAGAGATA | 58.846 | 40.000 | 0.00 | 0.00 | 38.01 | 1.98 |
4263 | 5033 | 2.159085 | AGATAGGCACTTACCGAGTTGC | 60.159 | 50.000 | 0.00 | 0.00 | 41.75 | 4.17 |
4420 | 5190 | 2.964978 | GCATTTGCAGACCCGCTT | 59.035 | 55.556 | 0.00 | 0.00 | 41.59 | 4.68 |
4607 | 5392 | 5.608676 | GTGAAACTCCTTAGCTTGTAACC | 57.391 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
4608 | 5393 | 4.151867 | GTGAAACTCCTTAGCTTGTAACCG | 59.848 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
4609 | 5394 | 4.202284 | TGAAACTCCTTAGCTTGTAACCGT | 60.202 | 41.667 | 0.00 | 0.00 | 0.00 | 4.83 |
4610 | 5395 | 3.589495 | ACTCCTTAGCTTGTAACCGTC | 57.411 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
4611 | 5396 | 2.233186 | ACTCCTTAGCTTGTAACCGTCC | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4612 | 5397 | 2.232941 | CTCCTTAGCTTGTAACCGTCCA | 59.767 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4613 | 5398 | 2.835764 | TCCTTAGCTTGTAACCGTCCAT | 59.164 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
4650 | 5437 | 5.485620 | ACTAAGAACATCCTTCGGTAAACC | 58.514 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
4683 | 5470 | 2.202960 | TTGCAGGTATACGGCGGC | 60.203 | 61.111 | 13.24 | 0.00 | 43.71 | 6.53 |
4803 | 5590 | 1.478105 | CTCGTCTGTGTCATCATGGGA | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 4.37 |
4923 | 5710 | 1.227674 | CTTCGGCTGGTCATAGGCC | 60.228 | 63.158 | 0.00 | 0.00 | 39.88 | 5.19 |
4927 | 5714 | 1.538666 | GGCTGGTCATAGGCCCATT | 59.461 | 57.895 | 0.00 | 0.00 | 39.96 | 3.16 |
4959 | 5746 | 2.349817 | GGACACACGCTTGAGTTTGATG | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4965 | 5752 | 1.532437 | CGCTTGAGTTTGATGCTGTCA | 59.468 | 47.619 | 0.00 | 0.00 | 34.25 | 3.58 |
5110 | 5898 | 4.228317 | GTGTGTTCTCTTCTCTTCGGTAC | 58.772 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
5115 | 5903 | 4.564782 | TCTCTTCTCTTCGGTACTGGTA | 57.435 | 45.455 | 0.85 | 0.00 | 0.00 | 3.25 |
5121 | 5909 | 9.233649 | CTCTTCTCTTCGGTACTGGTATATTAT | 57.766 | 37.037 | 0.85 | 0.00 | 0.00 | 1.28 |
5168 | 5956 | 5.447573 | GCTACATGCTAGAAATAAGCTTGC | 58.552 | 41.667 | 9.86 | 2.12 | 44.62 | 4.01 |
5178 | 5969 | 6.124088 | AGAAATAAGCTTGCGATTAACCTG | 57.876 | 37.500 | 9.86 | 0.00 | 0.00 | 4.00 |
5199 | 6270 | 6.151817 | ACCTGTTTTATCTGGATTTTGCTCTC | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
5200 | 6271 | 6.151648 | CCTGTTTTATCTGGATTTTGCTCTCA | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
5203 | 6274 | 6.748333 | TTTATCTGGATTTTGCTCTCAGTG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.66 |
5249 | 6329 | 2.016318 | AGGTTGTCATGTGTGTGTGTG | 58.984 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
5250 | 6330 | 1.742831 | GGTTGTCATGTGTGTGTGTGT | 59.257 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
5251 | 6331 | 2.477694 | GGTTGTCATGTGTGTGTGTGTG | 60.478 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5252 | 6332 | 2.106477 | TGTCATGTGTGTGTGTGTGT | 57.894 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
5253 | 6333 | 1.736681 | TGTCATGTGTGTGTGTGTGTG | 59.263 | 47.619 | 0.00 | 0.00 | 0.00 | 3.82 |
5254 | 6334 | 0.731994 | TCATGTGTGTGTGTGTGTGC | 59.268 | 50.000 | 0.00 | 0.00 | 0.00 | 4.57 |
5255 | 6335 | 0.589479 | CATGTGTGTGTGTGTGTGCG | 60.589 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
5256 | 6336 | 0.742635 | ATGTGTGTGTGTGTGTGCGA | 60.743 | 50.000 | 0.00 | 0.00 | 0.00 | 5.10 |
5278 | 6358 | 5.056894 | AGAGAGAGAAAATTGCATTGTGC | 57.943 | 39.130 | 0.00 | 0.00 | 45.29 | 4.57 |
5281 | 6361 | 3.921677 | AGAGAAAATTGCATTGTGCCAG | 58.078 | 40.909 | 0.00 | 0.00 | 44.23 | 4.85 |
5398 | 6481 | 5.491070 | TCATCTACCCATCTCACACTTTTG | 58.509 | 41.667 | 0.00 | 0.00 | 0.00 | 2.44 |
5558 | 6670 | 3.820467 | TGGCAGTGAAAAACATGTCCTAG | 59.180 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
5588 | 6701 | 6.111382 | ACATCTCTTGATACATCTGGTGTTG | 58.889 | 40.000 | 0.00 | 0.00 | 42.29 | 3.33 |
5649 | 6763 | 5.047802 | ACAACTTCCTAATGTTCATTGCAGG | 60.048 | 40.000 | 8.11 | 7.84 | 0.00 | 4.85 |
5667 | 6781 | 1.179174 | GGTTTGGTCAGCCCTTCCAC | 61.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
5777 | 6891 | 1.745653 | GAAGTTGTAGAATGGCAGGGC | 59.254 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
5859 | 6974 | 2.159234 | GTCAGAGCAAGCTCACACATTC | 59.841 | 50.000 | 22.68 | 3.90 | 44.99 | 2.67 |
5875 | 6990 | 4.256920 | CACATTCTACAGGGTTCAGAAGG | 58.743 | 47.826 | 0.00 | 0.00 | 36.45 | 3.46 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.452733 | GCGCTCCTACCGGTTGCT | 62.453 | 66.667 | 15.04 | 0.00 | 0.00 | 3.91 |
1 | 2 | 4.452733 | AGCGCTCCTACCGGTTGC | 62.453 | 66.667 | 15.04 | 11.89 | 31.77 | 4.17 |
7 | 8 | 1.392710 | TAGAAGGCAGCGCTCCTACC | 61.393 | 60.000 | 23.11 | 15.70 | 32.65 | 3.18 |
8 | 9 | 0.460311 | TTAGAAGGCAGCGCTCCTAC | 59.540 | 55.000 | 23.11 | 8.58 | 32.65 | 3.18 |
10 | 11 | 0.391793 | GTTTAGAAGGCAGCGCTCCT | 60.392 | 55.000 | 18.96 | 18.96 | 34.90 | 3.69 |
11 | 12 | 0.673644 | TGTTTAGAAGGCAGCGCTCC | 60.674 | 55.000 | 7.13 | 12.68 | 0.00 | 4.70 |
12 | 13 | 1.373570 | ATGTTTAGAAGGCAGCGCTC | 58.626 | 50.000 | 7.13 | 2.01 | 0.00 | 5.03 |
13 | 14 | 1.740025 | GAATGTTTAGAAGGCAGCGCT | 59.260 | 47.619 | 2.64 | 2.64 | 0.00 | 5.92 |
14 | 15 | 1.202188 | GGAATGTTTAGAAGGCAGCGC | 60.202 | 52.381 | 0.00 | 0.00 | 0.00 | 5.92 |
15 | 16 | 2.083774 | TGGAATGTTTAGAAGGCAGCG | 58.916 | 47.619 | 0.00 | 0.00 | 0.00 | 5.18 |
16 | 17 | 2.819608 | TGTGGAATGTTTAGAAGGCAGC | 59.180 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
17 | 18 | 4.701651 | TCATGTGGAATGTTTAGAAGGCAG | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
18 | 19 | 4.661222 | TCATGTGGAATGTTTAGAAGGCA | 58.339 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
19 | 20 | 5.126061 | ACATCATGTGGAATGTTTAGAAGGC | 59.874 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
20 | 21 | 6.764308 | ACATCATGTGGAATGTTTAGAAGG | 57.236 | 37.500 | 0.00 | 0.00 | 0.00 | 3.46 |
23 | 24 | 9.460019 | TCATTTACATCATGTGGAATGTTTAGA | 57.540 | 29.630 | 19.86 | 6.07 | 36.96 | 2.10 |
26 | 27 | 8.751242 | TCATCATTTACATCATGTGGAATGTTT | 58.249 | 29.630 | 19.86 | 11.46 | 36.96 | 2.83 |
27 | 28 | 8.296211 | TCATCATTTACATCATGTGGAATGTT | 57.704 | 30.769 | 19.86 | 13.38 | 36.96 | 2.71 |
28 | 29 | 7.776500 | TCTCATCATTTACATCATGTGGAATGT | 59.224 | 33.333 | 19.86 | 11.70 | 36.96 | 2.71 |
29 | 30 | 8.074370 | GTCTCATCATTTACATCATGTGGAATG | 58.926 | 37.037 | 16.78 | 16.78 | 36.97 | 2.67 |
30 | 31 | 7.230108 | GGTCTCATCATTTACATCATGTGGAAT | 59.770 | 37.037 | 0.00 | 0.00 | 28.59 | 3.01 |
31 | 32 | 6.543465 | GGTCTCATCATTTACATCATGTGGAA | 59.457 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
32 | 33 | 6.057533 | GGTCTCATCATTTACATCATGTGGA | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
33 | 34 | 5.049886 | CGGTCTCATCATTTACATCATGTGG | 60.050 | 44.000 | 0.00 | 0.00 | 0.00 | 4.17 |
51 | 52 | 4.681978 | AGGCGCCACAACGGTCTC | 62.682 | 66.667 | 31.54 | 0.00 | 36.97 | 3.36 |
54 | 55 | 4.250305 | AAGAGGCGCCACAACGGT | 62.250 | 61.111 | 31.54 | 5.22 | 36.97 | 4.83 |
56 | 57 | 3.726517 | CCAAGAGGCGCCACAACG | 61.727 | 66.667 | 31.54 | 14.39 | 0.00 | 4.10 |
58 | 59 | 2.594303 | CACCAAGAGGCGCCACAA | 60.594 | 61.111 | 31.54 | 0.00 | 39.06 | 3.33 |
73 | 74 | 0.607489 | AGGCACTCCAGCAATGACAC | 60.607 | 55.000 | 0.00 | 0.00 | 35.83 | 3.67 |
107 | 108 | 0.332632 | CACCCCCATTGATGTCTGGT | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
112 | 113 | 1.381867 | TCTTCCACCCCCATTGATGT | 58.618 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
134 | 135 | 5.048504 | GTCAATTTGAGACAGAATCTTGCCA | 60.049 | 40.000 | 0.00 | 0.00 | 38.00 | 4.92 |
139 | 140 | 5.250313 | AGGGAGTCAATTTGAGACAGAATCT | 59.750 | 40.000 | 0.00 | 0.00 | 41.91 | 2.40 |
147 | 148 | 1.988107 | AGGCAGGGAGTCAATTTGAGA | 59.012 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
151 | 152 | 1.075601 | TCCAGGCAGGGAGTCAATTT | 58.924 | 50.000 | 0.00 | 0.00 | 38.24 | 1.82 |
164 | 165 | 2.124403 | CCATGGTGCTCTCCAGGC | 60.124 | 66.667 | 2.57 | 0.00 | 41.05 | 4.85 |
167 | 168 | 1.288188 | TCATTCCATGGTGCTCTCCA | 58.712 | 50.000 | 12.58 | 0.00 | 42.01 | 3.86 |
176 | 177 | 0.308684 | CGTGCCGATTCATTCCATGG | 59.691 | 55.000 | 4.97 | 4.97 | 0.00 | 3.66 |
191 | 192 | 1.079336 | GACTACCCCTTCACCGTGC | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
193 | 194 | 0.178912 | AAGGACTACCCCTTCACCGT | 60.179 | 55.000 | 0.00 | 0.00 | 42.62 | 4.83 |
194 | 195 | 1.479730 | GTAAGGACTACCCCTTCACCG | 59.520 | 57.143 | 0.00 | 0.00 | 44.88 | 4.94 |
210 | 211 | 1.375523 | GGTCACCCGCCTGTGTAAG | 60.376 | 63.158 | 0.71 | 0.00 | 37.51 | 2.34 |
303 | 313 | 1.565759 | TCTTGGCTGGTGCTCCATAAT | 59.434 | 47.619 | 8.18 | 0.00 | 43.43 | 1.28 |
316 | 326 | 3.728385 | ATGTAGGCTCTTTTCTTGGCT | 57.272 | 42.857 | 0.00 | 0.00 | 39.84 | 4.75 |
324 | 334 | 3.191371 | CGGAAGCAAAATGTAGGCTCTTT | 59.809 | 43.478 | 0.00 | 0.00 | 36.76 | 2.52 |
325 | 335 | 2.749621 | CGGAAGCAAAATGTAGGCTCTT | 59.250 | 45.455 | 0.00 | 0.00 | 36.76 | 2.85 |
326 | 336 | 2.359900 | CGGAAGCAAAATGTAGGCTCT | 58.640 | 47.619 | 0.00 | 0.00 | 36.76 | 4.09 |
341 | 351 | 3.499737 | GGTGCGTCCATGCGGAAG | 61.500 | 66.667 | 0.00 | 0.00 | 45.20 | 3.46 |
352 | 362 | 1.389555 | TCGAGACAGATATGGTGCGT | 58.610 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
365 | 375 | 1.821216 | TTCCCTGGCAAATTCGAGAC | 58.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
380 | 395 | 1.139853 | AGCTCAGTTCATCGGATTCCC | 59.860 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
383 | 398 | 2.499289 | ACTCAGCTCAGTTCATCGGATT | 59.501 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
396 | 411 | 2.124693 | AGCTCCGCCTACTCAGCTC | 61.125 | 63.158 | 0.00 | 0.00 | 37.72 | 4.09 |
400 | 415 | 0.684479 | ATGTGAGCTCCGCCTACTCA | 60.684 | 55.000 | 12.15 | 0.00 | 38.09 | 3.41 |
409 | 424 | 0.031449 | GCGGAGACTATGTGAGCTCC | 59.969 | 60.000 | 12.15 | 3.09 | 41.47 | 4.70 |
415 | 430 | 1.443407 | CCCCAGCGGAGACTATGTG | 59.557 | 63.158 | 0.00 | 0.00 | 0.00 | 3.21 |
416 | 431 | 1.762460 | CCCCCAGCGGAGACTATGT | 60.762 | 63.158 | 0.00 | 0.00 | 0.00 | 2.29 |
418 | 433 | 1.457831 | GACCCCCAGCGGAGACTAT | 60.458 | 63.158 | 0.00 | 0.00 | 0.00 | 2.12 |
419 | 434 | 2.043248 | GACCCCCAGCGGAGACTA | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 2.59 |
423 | 438 | 2.893682 | GATTTGGACCCCCAGCGGAG | 62.894 | 65.000 | 0.00 | 0.00 | 44.60 | 4.63 |
429 | 446 | 1.151474 | TCCTGGATTTGGACCCCCA | 60.151 | 57.895 | 0.00 | 0.00 | 41.64 | 4.96 |
445 | 462 | 0.755698 | TACGCCCAGACTCCATCTCC | 60.756 | 60.000 | 0.00 | 0.00 | 34.41 | 3.71 |
458 | 475 | 1.736365 | GCTCTAGACACCCTACGCCC | 61.736 | 65.000 | 0.00 | 0.00 | 0.00 | 6.13 |
462 | 479 | 5.637006 | CATAGATGCTCTAGACACCCTAC | 57.363 | 47.826 | 0.00 | 0.00 | 31.67 | 3.18 |
487 | 504 | 6.335471 | TGATTCATGAACACAAGAGCAAAT | 57.665 | 33.333 | 11.07 | 0.00 | 0.00 | 2.32 |
545 | 584 | 6.592870 | GCTCCTAACCATCTAACCATAAGTT | 58.407 | 40.000 | 0.00 | 0.00 | 42.83 | 2.66 |
550 | 589 | 3.039011 | ACGCTCCTAACCATCTAACCAT | 58.961 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
552 | 591 | 2.167900 | ACACGCTCCTAACCATCTAACC | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
556 | 595 | 2.180276 | AGAACACGCTCCTAACCATCT | 58.820 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
557 | 596 | 2.674796 | AGAACACGCTCCTAACCATC | 57.325 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
602 | 656 | 4.842574 | AGCTGGTTTTGAAACACCAAAAT | 58.157 | 34.783 | 8.68 | 1.63 | 44.63 | 1.82 |
644 | 701 | 4.229096 | TGTTACTTACCTTTGTACGCTCG | 58.771 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
651 | 708 | 7.095355 | CGTTGAGCTATTGTTACTTACCTTTGT | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
652 | 709 | 7.234384 | CGTTGAGCTATTGTTACTTACCTTTG | 58.766 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
658 | 715 | 3.861113 | CGCCGTTGAGCTATTGTTACTTA | 59.139 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
810 | 876 | 1.140852 | CCATGTGGCGGGAATAGAAGA | 59.859 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
892 | 960 | 6.483307 | TGCGATCCGAGAGATATTTCAAAATT | 59.517 | 34.615 | 0.00 | 0.00 | 34.42 | 1.82 |
893 | 961 | 5.991606 | TGCGATCCGAGAGATATTTCAAAAT | 59.008 | 36.000 | 0.00 | 0.00 | 34.42 | 1.82 |
1150 | 1219 | 1.671901 | GAGGAGGAGTTGAGGCGGAG | 61.672 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1269 | 1341 | 1.089920 | CCGCCTTGAACATGAGGAAG | 58.910 | 55.000 | 0.00 | 0.00 | 34.91 | 3.46 |
1441 | 1513 | 2.430367 | GCCTTGAACGGGGTGTCT | 59.570 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
1443 | 1515 | 4.280019 | GGGCCTTGAACGGGGTGT | 62.280 | 66.667 | 0.84 | 0.00 | 0.00 | 4.16 |
1445 | 1517 | 2.591193 | TTTTGGGCCTTGAACGGGGT | 62.591 | 55.000 | 4.53 | 0.00 | 0.00 | 4.95 |
1507 | 1612 | 1.916697 | GCTCGGGAGTTGCTTCAAGC | 61.917 | 60.000 | 1.04 | 1.04 | 42.82 | 4.01 |
1540 | 1645 | 9.630098 | TTACTCTTTGGTACGATACTACTTTTG | 57.370 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1553 | 1658 | 6.856426 | GTCAACAAGCATTTACTCTTTGGTAC | 59.144 | 38.462 | 0.00 | 0.00 | 0.00 | 3.34 |
1586 | 1692 | 5.712446 | GGGAGGATTTGCTTTTTACTCTTCT | 59.288 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1603 | 1709 | 1.564348 | AGCCAACATAAACGGGAGGAT | 59.436 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
1620 | 1726 | 3.126000 | CAGATCAAGAACCGAAAAGAGCC | 59.874 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
1623 | 1729 | 5.820423 | TGAAACAGATCAAGAACCGAAAAGA | 59.180 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1626 | 1732 | 5.364778 | TCTGAAACAGATCAAGAACCGAAA | 58.635 | 37.500 | 0.00 | 0.00 | 35.39 | 3.46 |
1640 | 1746 | 2.500910 | AGAGGGCTCAGATCTGAAACAG | 59.499 | 50.000 | 25.09 | 14.92 | 39.39 | 3.16 |
1655 | 1761 | 2.686915 | CAATCAGATCAAACCAGAGGGC | 59.313 | 50.000 | 0.00 | 0.00 | 37.90 | 5.19 |
1697 | 1805 | 0.819259 | CGCCAATGGGGGTCATACAG | 60.819 | 60.000 | 8.64 | 0.00 | 41.99 | 2.74 |
1698 | 1806 | 1.225983 | CGCCAATGGGGGTCATACA | 59.774 | 57.895 | 8.64 | 0.00 | 41.99 | 2.29 |
1699 | 1807 | 4.157607 | CGCCAATGGGGGTCATAC | 57.842 | 61.111 | 8.64 | 0.00 | 41.99 | 2.39 |
1715 | 1823 | 3.365265 | GCACAAGCCCAAGGTCCG | 61.365 | 66.667 | 0.00 | 0.00 | 33.58 | 4.79 |
1716 | 1824 | 2.203480 | TGCACAAGCCCAAGGTCC | 60.203 | 61.111 | 0.00 | 0.00 | 41.13 | 4.46 |
1787 | 1914 | 6.940298 | TCTCCAAATAGTCTACTTTTGGGTTG | 59.060 | 38.462 | 22.49 | 16.98 | 46.06 | 3.77 |
1840 | 1983 | 0.854218 | TGGTTGGTTGGGGCTTAAGA | 59.146 | 50.000 | 6.67 | 0.00 | 0.00 | 2.10 |
1952 | 2095 | 0.764890 | AAGGCCAGTGAGCACAAGTA | 59.235 | 50.000 | 5.01 | 0.00 | 0.00 | 2.24 |
1953 | 2096 | 0.820891 | CAAGGCCAGTGAGCACAAGT | 60.821 | 55.000 | 5.01 | 0.00 | 0.00 | 3.16 |
1954 | 2097 | 0.535780 | TCAAGGCCAGTGAGCACAAG | 60.536 | 55.000 | 5.01 | 0.00 | 0.00 | 3.16 |
1955 | 2098 | 0.819259 | GTCAAGGCCAGTGAGCACAA | 60.819 | 55.000 | 5.01 | 0.00 | 0.00 | 3.33 |
1960 | 2103 | 1.528129 | GGAAAGTCAAGGCCAGTGAG | 58.472 | 55.000 | 5.01 | 0.00 | 0.00 | 3.51 |
2042 | 2188 | 1.269206 | CCAATCCATTATGTGTGCGGC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 6.53 |
2044 | 2190 | 2.682352 | TCACCAATCCATTATGTGTGCG | 59.318 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
2046 | 2192 | 4.500205 | GCCATCACCAATCCATTATGTGTG | 60.500 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
2047 | 2193 | 3.638160 | GCCATCACCAATCCATTATGTGT | 59.362 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
2055 | 2201 | 0.617935 | TCGAAGCCATCACCAATCCA | 59.382 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2095 | 2242 | 0.750249 | AAAGGCAAGAAAACCCCACG | 59.250 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
2137 | 2284 | 7.375106 | AGCTATTCTCAAAGAATCACTGTTG | 57.625 | 36.000 | 5.50 | 0.00 | 40.75 | 3.33 |
2184 | 2331 | 1.570813 | TTGATCAGCGAACTATGGCG | 58.429 | 50.000 | 0.00 | 0.00 | 35.13 | 5.69 |
2185 | 2332 | 3.313526 | ACAATTGATCAGCGAACTATGGC | 59.686 | 43.478 | 13.59 | 0.00 | 0.00 | 4.40 |
2186 | 2333 | 4.318333 | CGACAATTGATCAGCGAACTATGG | 60.318 | 45.833 | 13.59 | 0.00 | 0.00 | 2.74 |
2188 | 2335 | 3.804325 | CCGACAATTGATCAGCGAACTAT | 59.196 | 43.478 | 13.59 | 0.00 | 0.00 | 2.12 |
2205 | 2363 | 0.034756 | CCATCACCAAGACACCGACA | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2206 | 2364 | 0.673644 | CCCATCACCAAGACACCGAC | 60.674 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2247 | 2411 | 3.449737 | CCGACTAATAGAACACCTTCCCA | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 4.37 |
2248 | 2412 | 3.450096 | ACCGACTAATAGAACACCTTCCC | 59.550 | 47.826 | 0.00 | 0.00 | 0.00 | 3.97 |
2250 | 2414 | 5.105837 | ACTGACCGACTAATAGAACACCTTC | 60.106 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2277 | 2441 | 7.394359 | ACAATTAACTGTAAGATGCCAACTGAT | 59.606 | 33.333 | 0.00 | 0.00 | 37.43 | 2.90 |
2282 | 2446 | 8.200792 | ACAAAACAATTAACTGTAAGATGCCAA | 58.799 | 29.630 | 0.00 | 0.00 | 37.43 | 4.52 |
2284 | 2448 | 7.865385 | TCACAAAACAATTAACTGTAAGATGCC | 59.135 | 33.333 | 0.00 | 0.00 | 37.43 | 4.40 |
2285 | 2449 | 8.795786 | TCACAAAACAATTAACTGTAAGATGC | 57.204 | 30.769 | 0.00 | 0.00 | 37.43 | 3.91 |
2319 | 2483 | 7.592885 | AACCATATGATGTAGTACTACCGTT | 57.407 | 36.000 | 26.41 | 13.70 | 35.26 | 4.44 |
2326 | 2490 | 6.973843 | TGTCGGTAACCATATGATGTAGTAC | 58.026 | 40.000 | 3.65 | 0.00 | 0.00 | 2.73 |
2327 | 2491 | 7.585579 | TTGTCGGTAACCATATGATGTAGTA | 57.414 | 36.000 | 3.65 | 0.00 | 0.00 | 1.82 |
2328 | 2492 | 6.474140 | TTGTCGGTAACCATATGATGTAGT | 57.526 | 37.500 | 3.65 | 0.00 | 0.00 | 2.73 |
2330 | 2494 | 8.422566 | TGTTATTGTCGGTAACCATATGATGTA | 58.577 | 33.333 | 3.65 | 0.00 | 32.40 | 2.29 |
2331 | 2495 | 7.225931 | GTGTTATTGTCGGTAACCATATGATGT | 59.774 | 37.037 | 3.65 | 0.00 | 32.40 | 3.06 |
2332 | 2496 | 7.225734 | TGTGTTATTGTCGGTAACCATATGATG | 59.774 | 37.037 | 3.65 | 0.00 | 32.40 | 3.07 |
2333 | 2497 | 7.276658 | TGTGTTATTGTCGGTAACCATATGAT | 58.723 | 34.615 | 3.65 | 0.00 | 32.40 | 2.45 |
2334 | 2498 | 6.641474 | TGTGTTATTGTCGGTAACCATATGA | 58.359 | 36.000 | 3.65 | 0.00 | 32.40 | 2.15 |
2335 | 2499 | 6.912203 | TGTGTTATTGTCGGTAACCATATG | 57.088 | 37.500 | 0.00 | 0.00 | 32.40 | 1.78 |
2338 | 2502 | 5.941058 | TCAATGTGTTATTGTCGGTAACCAT | 59.059 | 36.000 | 0.00 | 0.00 | 32.40 | 3.55 |
2389 | 2923 | 7.178983 | ACCTTGCATTTGATCTTTGGAGAAATA | 59.821 | 33.333 | 0.00 | 0.00 | 35.07 | 1.40 |
2573 | 3230 | 9.082313 | TGCATATCTCACTGAGAATAATGTAGA | 57.918 | 33.333 | 12.83 | 4.28 | 42.27 | 2.59 |
2611 | 3268 | 8.950210 | ACGATGTTGAATTTAGAAGTGATCAAT | 58.050 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
2680 | 3364 | 4.904241 | AGCAAGCTAGTCTTTGAAGTGAT | 58.096 | 39.130 | 0.00 | 0.00 | 31.27 | 3.06 |
2700 | 3384 | 4.749245 | ATGTGCAAACAAGTACTGTAGC | 57.251 | 40.909 | 0.00 | 6.10 | 37.23 | 3.58 |
2709 | 3393 | 4.984161 | CCCAAGTAAGAATGTGCAAACAAG | 59.016 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2710 | 3394 | 4.404073 | ACCCAAGTAAGAATGTGCAAACAA | 59.596 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2712 | 3396 | 4.584327 | ACCCAAGTAAGAATGTGCAAAC | 57.416 | 40.909 | 0.00 | 0.00 | 0.00 | 2.93 |
2716 | 3400 | 5.243060 | ACCTAAAACCCAAGTAAGAATGTGC | 59.757 | 40.000 | 0.00 | 0.00 | 0.00 | 4.57 |
2717 | 3401 | 6.294508 | CCACCTAAAACCCAAGTAAGAATGTG | 60.295 | 42.308 | 0.00 | 0.00 | 0.00 | 3.21 |
2718 | 3402 | 5.773176 | CCACCTAAAACCCAAGTAAGAATGT | 59.227 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2719 | 3403 | 5.773176 | ACCACCTAAAACCCAAGTAAGAATG | 59.227 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2720 | 3404 | 5.960704 | ACCACCTAAAACCCAAGTAAGAAT | 58.039 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
2721 | 3405 | 5.391577 | ACCACCTAAAACCCAAGTAAGAA | 57.608 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2722 | 3406 | 6.707273 | ATACCACCTAAAACCCAAGTAAGA | 57.293 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2723 | 3407 | 8.733458 | GTTTATACCACCTAAAACCCAAGTAAG | 58.267 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
2724 | 3408 | 8.223330 | TGTTTATACCACCTAAAACCCAAGTAA | 58.777 | 33.333 | 0.00 | 0.00 | 32.18 | 2.24 |
2725 | 3409 | 7.753630 | TGTTTATACCACCTAAAACCCAAGTA | 58.246 | 34.615 | 0.00 | 0.00 | 32.18 | 2.24 |
2726 | 3410 | 6.612741 | TGTTTATACCACCTAAAACCCAAGT | 58.387 | 36.000 | 0.00 | 0.00 | 32.18 | 3.16 |
2763 | 3447 | 8.729805 | AAAATCCAAGTAAGAATGTGCAAAAA | 57.270 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
2764 | 3448 | 9.474920 | CTAAAATCCAAGTAAGAATGTGCAAAA | 57.525 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
2765 | 3449 | 8.087750 | CCTAAAATCCAAGTAAGAATGTGCAAA | 58.912 | 33.333 | 0.00 | 0.00 | 0.00 | 3.68 |
2766 | 3450 | 7.232534 | ACCTAAAATCCAAGTAAGAATGTGCAA | 59.767 | 33.333 | 0.00 | 0.00 | 0.00 | 4.08 |
2787 | 3471 | 9.521841 | TCACATAAAAATGTTCATACCACCTAA | 57.478 | 29.630 | 0.00 | 0.00 | 31.37 | 2.69 |
2788 | 3472 | 8.952278 | GTCACATAAAAATGTTCATACCACCTA | 58.048 | 33.333 | 0.00 | 0.00 | 31.37 | 3.08 |
2789 | 3473 | 7.450014 | TGTCACATAAAAATGTTCATACCACCT | 59.550 | 33.333 | 0.00 | 0.00 | 31.37 | 4.00 |
2790 | 3474 | 7.598278 | TGTCACATAAAAATGTTCATACCACC | 58.402 | 34.615 | 0.00 | 0.00 | 31.37 | 4.61 |
2791 | 3475 | 8.511321 | TCTGTCACATAAAAATGTTCATACCAC | 58.489 | 33.333 | 0.00 | 0.00 | 31.37 | 4.16 |
2792 | 3476 | 8.628630 | TCTGTCACATAAAAATGTTCATACCA | 57.371 | 30.769 | 0.00 | 0.00 | 31.37 | 3.25 |
2793 | 3477 | 9.906660 | TTTCTGTCACATAAAAATGTTCATACC | 57.093 | 29.630 | 0.00 | 0.00 | 31.37 | 2.73 |
2796 | 3480 | 9.985730 | ATGTTTCTGTCACATAAAAATGTTCAT | 57.014 | 25.926 | 0.00 | 0.00 | 32.88 | 2.57 |
2797 | 3481 | 9.462174 | GATGTTTCTGTCACATAAAAATGTTCA | 57.538 | 29.630 | 0.00 | 0.00 | 34.89 | 3.18 |
2798 | 3482 | 9.683069 | AGATGTTTCTGTCACATAAAAATGTTC | 57.317 | 29.630 | 0.00 | 0.00 | 34.89 | 3.18 |
2854 | 3538 | 5.171339 | AGCATATGGACCATCATAACTCC | 57.829 | 43.478 | 11.17 | 0.00 | 33.86 | 3.85 |
2885 | 3569 | 9.875675 | CAGTCTGCATAGAAATTAAATAGCTTC | 57.124 | 33.333 | 0.00 | 0.00 | 34.01 | 3.86 |
2924 | 3631 | 5.063944 | ACAGATCAGAATTATGTGTGAACGC | 59.936 | 40.000 | 0.00 | 0.00 | 30.37 | 4.84 |
3111 | 3818 | 5.048782 | GTCAGTTGAATCAATAGCAACACCA | 60.049 | 40.000 | 0.00 | 0.00 | 43.15 | 4.17 |
3166 | 3873 | 9.031360 | GTAACAACATACATACATACAGAGTGG | 57.969 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
3170 | 3877 | 8.254508 | TGCAGTAACAACATACATACATACAGA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3183 | 3890 | 4.960938 | TCTTCAGACTGCAGTAACAACAT | 58.039 | 39.130 | 21.73 | 0.00 | 0.00 | 2.71 |
3224 | 3932 | 6.628856 | CAGCATCGTACTGCATAATTTACAAC | 59.371 | 38.462 | 9.50 | 0.00 | 44.77 | 3.32 |
3240 | 3948 | 5.034797 | CGAGATAAAACTGACAGCATCGTA | 58.965 | 41.667 | 1.25 | 0.00 | 0.00 | 3.43 |
3242 | 3950 | 4.105486 | TCGAGATAAAACTGACAGCATCG | 58.895 | 43.478 | 1.25 | 2.75 | 0.00 | 3.84 |
3243 | 3951 | 6.408858 | TTTCGAGATAAAACTGACAGCATC | 57.591 | 37.500 | 1.25 | 1.00 | 0.00 | 3.91 |
3247 | 3955 | 9.959775 | GTATTCTTTTCGAGATAAAACTGACAG | 57.040 | 33.333 | 0.00 | 0.00 | 33.49 | 3.51 |
3253 | 3961 | 9.052080 | GCTGTTGTATTCTTTTCGAGATAAAAC | 57.948 | 33.333 | 0.00 | 0.00 | 33.49 | 2.43 |
3267 | 3976 | 8.798859 | ATTCAATAACTGAGCTGTTGTATTCT | 57.201 | 30.769 | 0.00 | 0.00 | 34.81 | 2.40 |
3302 | 4011 | 3.002656 | CAGGGTGCGATCATATCAAACAC | 59.997 | 47.826 | 0.00 | 0.00 | 0.00 | 3.32 |
3365 | 4074 | 2.023741 | GCCATGATTCGTGCTGCG | 59.976 | 61.111 | 0.00 | 0.00 | 43.01 | 5.18 |
3461 | 4170 | 0.839946 | ATGAAGCGATTAGGGCCAGT | 59.160 | 50.000 | 6.18 | 0.00 | 0.00 | 4.00 |
3473 | 4182 | 3.301906 | CGAGTACAAGTGAGAATGAAGCG | 59.698 | 47.826 | 0.00 | 0.00 | 0.00 | 4.68 |
3518 | 4227 | 9.667107 | CCTCCTACAAATGAAACTGTCTAAATA | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3522 | 4231 | 5.248477 | AGCCTCCTACAAATGAAACTGTCTA | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
3583 | 4292 | 8.635765 | AAAACCTGATGCAAAGAGTAGAATTA | 57.364 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
3584 | 4293 | 7.309438 | GGAAAACCTGATGCAAAGAGTAGAATT | 60.309 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
3585 | 4294 | 6.151817 | GGAAAACCTGATGCAAAGAGTAGAAT | 59.848 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
3586 | 4295 | 5.473504 | GGAAAACCTGATGCAAAGAGTAGAA | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3587 | 4296 | 5.003804 | GGAAAACCTGATGCAAAGAGTAGA | 58.996 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
3588 | 4297 | 4.761739 | TGGAAAACCTGATGCAAAGAGTAG | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3590 | 4299 | 3.565307 | TGGAAAACCTGATGCAAAGAGT | 58.435 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
3592 | 4301 | 2.297033 | GCTGGAAAACCTGATGCAAAGA | 59.703 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
3593 | 4302 | 2.611224 | GGCTGGAAAACCTGATGCAAAG | 60.611 | 50.000 | 0.00 | 0.00 | 0.00 | 2.77 |
3642 | 4354 | 3.276021 | CACATGCTTGTGCTTTGCA | 57.724 | 47.368 | 18.52 | 0.00 | 46.20 | 4.08 |
3777 | 4490 | 7.416817 | TGAATGCTGTGTTATTTGAATATCGG | 58.583 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
4139 | 4855 | 5.265191 | AGAGGTGTGCTCTGTCTATTTCTA | 58.735 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
4186 | 4904 | 6.831868 | ACTTGTTTTATGTGTTTCCCTAGTGT | 59.168 | 34.615 | 0.00 | 0.00 | 0.00 | 3.55 |
4236 | 5002 | 3.066342 | TCGGTAAGTGCCTATCTCTTTCG | 59.934 | 47.826 | 0.00 | 0.00 | 31.62 | 3.46 |
4243 | 5009 | 2.202566 | GCAACTCGGTAAGTGCCTATC | 58.797 | 52.381 | 0.00 | 0.00 | 38.58 | 2.08 |
4244 | 5010 | 1.134491 | GGCAACTCGGTAAGTGCCTAT | 60.134 | 52.381 | 6.28 | 0.00 | 43.32 | 2.57 |
4245 | 5011 | 0.248289 | GGCAACTCGGTAAGTGCCTA | 59.752 | 55.000 | 6.28 | 0.00 | 43.32 | 3.93 |
4246 | 5012 | 1.003718 | GGCAACTCGGTAAGTGCCT | 60.004 | 57.895 | 6.28 | 0.00 | 43.32 | 4.75 |
4263 | 5033 | 4.440880 | CCTAGTTCTCTGCAGAATTCAGG | 58.559 | 47.826 | 18.85 | 15.60 | 40.88 | 3.86 |
4387 | 5157 | 1.992233 | ATGCGGCACAAATGGTAGCG | 61.992 | 55.000 | 4.03 | 0.00 | 0.00 | 4.26 |
4420 | 5190 | 2.346766 | AGTTGTGGACAGCATCAACA | 57.653 | 45.000 | 9.04 | 0.00 | 39.71 | 3.33 |
4606 | 5391 | 2.158740 | TCCAGAGTAGAGAGATGGACGG | 60.159 | 54.545 | 0.00 | 0.00 | 35.16 | 4.79 |
4607 | 5392 | 3.201353 | TCCAGAGTAGAGAGATGGACG | 57.799 | 52.381 | 0.00 | 0.00 | 35.16 | 4.79 |
4609 | 5394 | 5.668080 | TCTTAGTCCAGAGTAGAGAGATGGA | 59.332 | 44.000 | 0.00 | 0.00 | 37.71 | 3.41 |
4610 | 5395 | 5.935945 | TCTTAGTCCAGAGTAGAGAGATGG | 58.064 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
4611 | 5396 | 6.826231 | TGTTCTTAGTCCAGAGTAGAGAGATG | 59.174 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
4612 | 5397 | 6.964464 | TGTTCTTAGTCCAGAGTAGAGAGAT | 58.036 | 40.000 | 0.00 | 0.00 | 0.00 | 2.75 |
4613 | 5398 | 6.375830 | TGTTCTTAGTCCAGAGTAGAGAGA | 57.624 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
4683 | 5470 | 1.939934 | AGTGTGTTGTTCATGGTCACG | 59.060 | 47.619 | 0.00 | 0.00 | 32.55 | 4.35 |
4803 | 5590 | 1.048601 | TCCGGAAGCTTGTGAAGAGT | 58.951 | 50.000 | 2.10 | 0.00 | 0.00 | 3.24 |
4854 | 5641 | 1.751924 | GTCAGAGGGTACAGCAGGTAG | 59.248 | 57.143 | 0.00 | 0.00 | 31.13 | 3.18 |
4923 | 5710 | 4.499183 | GTGTGTCCAGACTAGAAGAATGG | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
4927 | 5714 | 1.540267 | GCGTGTGTCCAGACTAGAAGA | 59.460 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
5086 | 5874 | 3.053455 | CCGAAGAGAAGAGAACACACAC | 58.947 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
5110 | 5898 | 8.638873 | TCCTCCGCATTATGTATAATATACCAG | 58.361 | 37.037 | 7.85 | 0.00 | 32.05 | 4.00 |
5115 | 5903 | 8.304596 | CGGTATCCTCCGCATTATGTATAATAT | 58.695 | 37.037 | 0.00 | 0.00 | 43.96 | 1.28 |
5121 | 5909 | 3.861276 | CGGTATCCTCCGCATTATGTA | 57.139 | 47.619 | 0.00 | 0.00 | 43.96 | 2.29 |
5168 | 5956 | 9.289303 | CAAAATCCAGATAAAACAGGTTAATCG | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 3.34 |
5178 | 5969 | 7.025963 | CACTGAGAGCAAAATCCAGATAAAAC | 58.974 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
5199 | 6270 | 3.624861 | GCCACTCCATAATCTTCACACTG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
5200 | 6271 | 3.264193 | TGCCACTCCATAATCTTCACACT | 59.736 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
5203 | 6274 | 5.841957 | AAATGCCACTCCATAATCTTCAC | 57.158 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
5249 | 6329 | 3.424170 | GCAATTTTCTCTCTCTCGCACAC | 60.424 | 47.826 | 0.00 | 0.00 | 0.00 | 3.82 |
5250 | 6330 | 2.738846 | GCAATTTTCTCTCTCTCGCACA | 59.261 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
5251 | 6331 | 2.738846 | TGCAATTTTCTCTCTCTCGCAC | 59.261 | 45.455 | 0.00 | 0.00 | 0.00 | 5.34 |
5252 | 6332 | 3.044235 | TGCAATTTTCTCTCTCTCGCA | 57.956 | 42.857 | 0.00 | 0.00 | 0.00 | 5.10 |
5253 | 6333 | 4.142730 | ACAATGCAATTTTCTCTCTCTCGC | 60.143 | 41.667 | 0.00 | 0.00 | 31.22 | 5.03 |
5254 | 6334 | 5.322310 | CACAATGCAATTTTCTCTCTCTCG | 58.678 | 41.667 | 0.00 | 0.00 | 31.22 | 4.04 |
5255 | 6335 | 5.094134 | GCACAATGCAATTTTCTCTCTCTC | 58.906 | 41.667 | 0.00 | 0.00 | 44.26 | 3.20 |
5256 | 6336 | 5.056894 | GCACAATGCAATTTTCTCTCTCT | 57.943 | 39.130 | 0.00 | 0.00 | 44.26 | 3.10 |
5278 | 6358 | 1.736126 | CTGTGCACATCTAGCAACTGG | 59.264 | 52.381 | 22.00 | 0.00 | 44.64 | 4.00 |
5281 | 6361 | 2.005451 | CTCCTGTGCACATCTAGCAAC | 58.995 | 52.381 | 22.00 | 0.00 | 44.64 | 4.17 |
5398 | 6481 | 6.017440 | TGCCAAATGTAGTAGAAACTCAACAC | 60.017 | 38.462 | 0.00 | 0.00 | 37.15 | 3.32 |
5588 | 6701 | 4.815269 | AGAGACAGATGTGTTCAAGTAGC | 58.185 | 43.478 | 0.00 | 0.00 | 36.88 | 3.58 |
5649 | 6763 | 0.467290 | TGTGGAAGGGCTGACCAAAC | 60.467 | 55.000 | 0.47 | 0.00 | 43.89 | 2.93 |
5823 | 6937 | 4.991056 | TGCTCTGACTGTAACTGATGAAAC | 59.009 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
5859 | 6974 | 0.984230 | TGCCCTTCTGAACCCTGTAG | 59.016 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
5875 | 6990 | 1.734117 | GCAAGTGAAACGCCATGCC | 60.734 | 57.895 | 0.00 | 0.00 | 45.86 | 4.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.