Multiple sequence alignment - TraesCS3B01G165200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G165200 chr3B 100.000 3195 0 0 1 3195 163293938 163297132 0.000000e+00 5901.0
1 TraesCS3B01G165200 chr3B 84.715 772 68 21 4 753 718369924 718370667 0.000000e+00 726.0
2 TraesCS3B01G165200 chr4B 90.826 763 30 11 5 753 109225447 109226183 0.000000e+00 985.0
3 TraesCS3B01G165200 chr7B 89.253 763 40 11 3 752 15618636 15619369 0.000000e+00 917.0
4 TraesCS3B01G165200 chr7B 93.939 363 21 1 2833 3195 579992800 579992439 6.030000e-152 547.0
5 TraesCS3B01G165200 chr6A 88.351 764 51 10 3 752 232141145 232141884 0.000000e+00 883.0
6 TraesCS3B01G165200 chr6B 88.235 765 53 9 3 753 68594641 68595382 0.000000e+00 880.0
7 TraesCS3B01G165200 chr6B 88.083 772 53 11 3 759 68841749 68842496 0.000000e+00 880.0
8 TraesCS3B01G165200 chr6B 94.505 364 19 1 2833 3195 712256653 712256290 7.740000e-156 560.0
9 TraesCS3B01G165200 chr6B 95.556 45 1 1 2417 2460 642891623 642891667 1.590000e-08 71.3
10 TraesCS3B01G165200 chr1A 88.105 765 54 9 3 753 136952039 136952780 0.000000e+00 874.0
11 TraesCS3B01G165200 chr3A 90.826 545 34 6 1890 2421 108033368 108033909 0.000000e+00 715.0
12 TraesCS3B01G165200 chr3A 86.688 631 66 9 1152 1769 108032699 108033324 0.000000e+00 684.0
13 TraesCS3B01G165200 chr3A 92.287 363 26 1 2833 3195 729710051 729709691 6.110000e-142 514.0
14 TraesCS3B01G165200 chr3A 90.710 366 34 0 2830 3195 660851402 660851767 3.700000e-134 488.0
15 TraesCS3B01G165200 chr3A 84.501 471 65 8 284 750 654202973 654202507 2.900000e-125 459.0
16 TraesCS3B01G165200 chr3A 89.562 297 26 2 851 1142 108031699 108031995 3.890000e-99 372.0
17 TraesCS3B01G165200 chr3D 92.202 436 33 1 1299 1734 112398223 112398657 1.630000e-172 616.0
18 TraesCS3B01G165200 chr3D 95.789 285 12 0 1896 2180 112398693 112398977 8.080000e-126 460.0
19 TraesCS3B01G165200 chr3D 92.691 301 21 1 2527 2826 112399198 112399498 1.760000e-117 433.0
20 TraesCS3B01G165200 chr3D 87.107 318 16 10 770 1078 112397923 112398224 1.420000e-88 337.0
21 TraesCS3B01G165200 chr3D 95.337 193 9 0 2223 2415 112398978 112399170 1.110000e-79 307.0
22 TraesCS3B01G165200 chr5B 94.780 364 18 1 2833 3195 586191291 586190928 1.660000e-157 566.0
23 TraesCS3B01G165200 chr2B 92.287 363 28 0 2833 3195 72723903 72723541 1.700000e-142 516.0
24 TraesCS3B01G165200 chr2B 86.458 96 13 0 1638 1733 227315970 227316065 4.360000e-19 106.0
25 TraesCS3B01G165200 chr1B 92.011 363 29 0 2833 3195 670960660 670961022 7.910000e-141 510.0
26 TraesCS3B01G165200 chr2D 91.758 364 27 3 2833 3195 545741938 545742299 1.320000e-138 503.0
27 TraesCS3B01G165200 chr7A 85.276 489 61 10 272 753 283147239 283146755 7.960000e-136 494.0
28 TraesCS3B01G165200 chr4A 89.807 363 36 1 2833 3195 626348540 626348901 6.240000e-127 464.0
29 TraesCS3B01G165200 chr5D 92.793 111 7 1 2417 2527 458453540 458453431 3.300000e-35 159.0
30 TraesCS3B01G165200 chr2A 91.150 113 8 2 2416 2527 528136609 528136498 5.520000e-33 152.0
31 TraesCS3B01G165200 chr6D 91.071 112 9 1 2411 2522 89349195 89349085 1.990000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G165200 chr3B 163293938 163297132 3194 False 5901.000000 5901 100.000000 1 3195 1 chr3B.!!$F1 3194
1 TraesCS3B01G165200 chr3B 718369924 718370667 743 False 726.000000 726 84.715000 4 753 1 chr3B.!!$F2 749
2 TraesCS3B01G165200 chr4B 109225447 109226183 736 False 985.000000 985 90.826000 5 753 1 chr4B.!!$F1 748
3 TraesCS3B01G165200 chr7B 15618636 15619369 733 False 917.000000 917 89.253000 3 752 1 chr7B.!!$F1 749
4 TraesCS3B01G165200 chr6A 232141145 232141884 739 False 883.000000 883 88.351000 3 752 1 chr6A.!!$F1 749
5 TraesCS3B01G165200 chr6B 68594641 68595382 741 False 880.000000 880 88.235000 3 753 1 chr6B.!!$F1 750
6 TraesCS3B01G165200 chr6B 68841749 68842496 747 False 880.000000 880 88.083000 3 759 1 chr6B.!!$F2 756
7 TraesCS3B01G165200 chr1A 136952039 136952780 741 False 874.000000 874 88.105000 3 753 1 chr1A.!!$F1 750
8 TraesCS3B01G165200 chr3A 108031699 108033909 2210 False 590.333333 715 89.025333 851 2421 3 chr3A.!!$F2 1570
9 TraesCS3B01G165200 chr3D 112397923 112399498 1575 False 430.600000 616 92.625200 770 2826 5 chr3D.!!$F1 2056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 230 0.598065 AGTCCATCGTTTTTGGCTGC 59.402 50.0 0.00 0.0 34.06 5.25 F
1001 1035 0.602106 CCAGCATCGATCAAGCGGAT 60.602 55.0 7.71 0.0 39.53 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1177 0.253327 GAGGTACAAGGGGCTGAAGG 59.747 60.0 0.0 0.0 0.0 3.46 R
2503 3252 0.029300 CGAACTGTTGTGTGGCTTGG 59.971 55.0 0.0 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 4.647424 CAGAATGGACTGGAGACTACTC 57.353 50.000 0.00 0.00 41.94 2.59
185 186 4.440940 CGGGAGTGTACTGTATTGCATGTA 60.441 45.833 0.00 0.00 0.00 2.29
214 230 0.598065 AGTCCATCGTTTTTGGCTGC 59.402 50.000 0.00 0.00 34.06 5.25
564 588 0.910566 TTGTGGTATAGTGGGCCGGT 60.911 55.000 1.90 0.00 0.00 5.28
640 664 4.225042 TCCTAGTGTGCCAAACATGTCTAT 59.775 41.667 0.00 0.00 41.97 1.98
642 666 2.489329 AGTGTGCCAAACATGTCTATGC 59.511 45.455 0.00 0.48 41.97 3.14
671 695 5.687166 ATAGACCGGGATTACAAGTTCAA 57.313 39.130 6.32 0.00 0.00 2.69
684 708 7.913674 TTACAAGTTCAAAGTGCCAATTTTT 57.086 28.000 0.00 0.00 0.00 1.94
756 781 6.982141 GGTTTGTTTCGGACTTTTTCCTAAAT 59.018 34.615 0.00 0.00 40.29 1.40
757 782 8.136800 GGTTTGTTTCGGACTTTTTCCTAAATA 58.863 33.333 0.00 0.00 40.29 1.40
763 788 8.785468 TTCGGACTTTTTCCTAAATAAAAACG 57.215 30.769 0.00 0.00 43.25 3.60
764 789 7.361894 TCGGACTTTTTCCTAAATAAAAACGG 58.638 34.615 0.00 0.00 43.25 4.44
765 790 6.583427 CGGACTTTTTCCTAAATAAAAACGGG 59.417 38.462 0.00 0.00 43.25 5.28
766 791 6.869913 GGACTTTTTCCTAAATAAAAACGGGG 59.130 38.462 0.00 0.00 41.95 5.73
767 792 6.761312 ACTTTTTCCTAAATAAAAACGGGGG 58.239 36.000 0.00 0.00 33.49 5.40
768 793 6.554228 ACTTTTTCCTAAATAAAAACGGGGGA 59.446 34.615 0.00 0.00 33.49 4.81
769 794 6.593268 TTTTCCTAAATAAAAACGGGGGAG 57.407 37.500 0.00 0.00 0.00 4.30
770 795 4.932911 TCCTAAATAAAAACGGGGGAGT 57.067 40.909 0.00 0.00 0.00 3.85
771 796 6.385766 TTCCTAAATAAAAACGGGGGAGTA 57.614 37.500 0.00 0.00 0.00 2.59
772 797 5.744171 TCCTAAATAAAAACGGGGGAGTAC 58.256 41.667 0.00 0.00 0.00 2.73
773 798 5.250313 TCCTAAATAAAAACGGGGGAGTACA 59.750 40.000 0.00 0.00 0.00 2.90
774 799 6.069498 TCCTAAATAAAAACGGGGGAGTACAT 60.069 38.462 0.00 0.00 0.00 2.29
775 800 7.127032 TCCTAAATAAAAACGGGGGAGTACATA 59.873 37.037 0.00 0.00 0.00 2.29
776 801 7.940688 CCTAAATAAAAACGGGGGAGTACATAT 59.059 37.037 0.00 0.00 0.00 1.78
777 802 9.346005 CTAAATAAAAACGGGGGAGTACATATT 57.654 33.333 0.00 0.00 0.00 1.28
779 804 9.697990 AAATAAAAACGGGGGAGTACATATTAA 57.302 29.630 0.00 0.00 0.00 1.40
780 805 9.871175 AATAAAAACGGGGGAGTACATATTAAT 57.129 29.630 0.00 0.00 0.00 1.40
781 806 7.812690 AAAAACGGGGGAGTACATATTAATC 57.187 36.000 0.00 0.00 0.00 1.75
813 838 1.880340 GCCTCCTCGATTGACTGCG 60.880 63.158 0.00 0.00 0.00 5.18
814 839 1.227089 CCTCCTCGATTGACTGCGG 60.227 63.158 0.00 0.00 0.00 5.69
817 842 2.185350 CTCGATTGACTGCGGGCT 59.815 61.111 0.00 0.00 0.00 5.19
843 868 2.225491 GCCATTACTCAAAAGTGTCGCA 59.775 45.455 0.00 0.00 36.92 5.10
844 869 3.119849 GCCATTACTCAAAAGTGTCGCAT 60.120 43.478 0.00 0.00 36.92 4.73
846 871 3.536158 TTACTCAAAAGTGTCGCATGC 57.464 42.857 7.91 7.91 36.92 4.06
847 872 1.308047 ACTCAAAAGTGTCGCATGCA 58.692 45.000 19.57 1.73 33.32 3.96
848 873 1.881973 ACTCAAAAGTGTCGCATGCAT 59.118 42.857 19.57 0.00 33.32 3.96
849 874 3.073678 ACTCAAAAGTGTCGCATGCATA 58.926 40.909 19.57 1.39 33.32 3.14
856 881 3.194861 AGTGTCGCATGCATATACGTTT 58.805 40.909 19.57 0.00 0.00 3.60
884 909 1.727335 GACGAAACACCAAGAGCTAGC 59.273 52.381 6.62 6.62 0.00 3.42
885 910 1.344763 ACGAAACACCAAGAGCTAGCT 59.655 47.619 19.45 19.45 0.00 3.32
897 924 1.067250 GCTAGCTTCAGCCTCTCCG 59.933 63.158 7.70 0.00 43.38 4.63
928 955 4.016706 CTGCCTCCCCGGTTCGTT 62.017 66.667 0.00 0.00 34.25 3.85
953 984 4.202264 CCAACTCTCCATTAATACCTCGCT 60.202 45.833 0.00 0.00 0.00 4.93
1001 1035 0.602106 CCAGCATCGATCAAGCGGAT 60.602 55.000 7.71 0.00 39.53 4.18
1004 1038 1.501337 GCATCGATCAAGCGGATGCA 61.501 55.000 20.84 0.00 46.23 3.96
1078 1112 1.079819 CACGATCACAGCGGGAACT 60.080 57.895 0.00 0.00 33.06 3.01
1142 1176 4.100084 TCTCGGCTGCCCCACATG 62.100 66.667 14.12 0.00 0.00 3.21
1147 1181 3.455469 GCTGCCCCACATGCCTTC 61.455 66.667 0.00 0.00 0.00 3.46
1148 1182 2.036098 CTGCCCCACATGCCTTCA 59.964 61.111 0.00 0.00 0.00 3.02
1149 1183 2.036098 TGCCCCACATGCCTTCAG 59.964 61.111 0.00 0.00 0.00 3.02
1155 1883 1.304713 CACATGCCTTCAGCCCCTT 60.305 57.895 0.00 0.00 42.71 3.95
1157 1885 1.304713 CATGCCTTCAGCCCCTTGT 60.305 57.895 0.00 0.00 42.71 3.16
1186 1914 5.820947 CCAGTGTTCCAGGTACATTATAACC 59.179 44.000 1.66 0.00 35.91 2.85
1191 1922 9.623000 GTGTTCCAGGTACATTATAACCTTTAT 57.377 33.333 1.66 0.00 43.77 1.40
1205 1936 4.530710 ACCTTTATCACGTGCTACAAGA 57.469 40.909 11.67 0.00 0.00 3.02
1206 1937 4.495422 ACCTTTATCACGTGCTACAAGAG 58.505 43.478 11.67 8.66 0.00 2.85
1217 1948 4.033358 CGTGCTACAAGAGGATTCAACATC 59.967 45.833 0.00 0.00 0.00 3.06
1230 1961 6.385176 AGGATTCAACATCCTAGATCACTTCA 59.615 38.462 1.25 0.00 46.11 3.02
1231 1962 6.705381 GGATTCAACATCCTAGATCACTTCAG 59.295 42.308 0.00 0.00 35.36 3.02
1233 1964 6.611613 TCAACATCCTAGATCACTTCAGTT 57.388 37.500 0.00 0.00 0.00 3.16
1235 1966 7.453393 TCAACATCCTAGATCACTTCAGTTTT 58.547 34.615 0.00 0.00 0.00 2.43
1236 1967 8.593679 TCAACATCCTAGATCACTTCAGTTTTA 58.406 33.333 0.00 0.00 0.00 1.52
1237 1968 9.388506 CAACATCCTAGATCACTTCAGTTTTAT 57.611 33.333 0.00 0.00 0.00 1.40
1238 1969 8.954950 ACATCCTAGATCACTTCAGTTTTATG 57.045 34.615 0.00 0.00 0.00 1.90
1239 1970 8.543774 ACATCCTAGATCACTTCAGTTTTATGT 58.456 33.333 0.00 0.00 0.00 2.29
1240 1971 9.039870 CATCCTAGATCACTTCAGTTTTATGTC 57.960 37.037 0.00 0.00 0.00 3.06
1241 1972 7.556844 TCCTAGATCACTTCAGTTTTATGTCC 58.443 38.462 0.00 0.00 0.00 4.02
1242 1973 7.400339 TCCTAGATCACTTCAGTTTTATGTCCT 59.600 37.037 0.00 0.00 0.00 3.85
1245 1976 8.103948 AGATCACTTCAGTTTTATGTCCTTTG 57.896 34.615 0.00 0.00 0.00 2.77
1246 1977 7.939039 AGATCACTTCAGTTTTATGTCCTTTGA 59.061 33.333 0.00 0.00 0.00 2.69
1252 1984 8.463930 TTCAGTTTTATGTCCTTTGAATCTGT 57.536 30.769 0.00 0.00 0.00 3.41
1253 1985 8.099364 TCAGTTTTATGTCCTTTGAATCTGTC 57.901 34.615 0.00 0.00 0.00 3.51
1263 1995 0.392863 TGAATCTGTCCCGCATGGTG 60.393 55.000 0.00 0.00 34.77 4.17
1265 1997 2.202236 AATCTGTCCCGCATGGTGCT 62.202 55.000 0.00 0.00 42.25 4.40
1266 1998 2.202236 ATCTGTCCCGCATGGTGCTT 62.202 55.000 0.00 0.00 42.25 3.91
1291 2023 2.045926 GCGGCTGGACATCTGGTT 60.046 61.111 0.00 0.00 0.00 3.67
1297 2029 1.541588 GCTGGACATCTGGTTTGTTCC 59.458 52.381 0.00 0.00 0.00 3.62
1335 2067 3.973657 TCTCGGACAAGAACAAGTGTAC 58.026 45.455 0.00 0.00 0.00 2.90
1342 2074 3.454812 ACAAGAACAAGTGTACCTCCTGT 59.545 43.478 0.00 0.00 0.00 4.00
1373 2105 4.515107 GCTTCAGCCGTTGTTTCG 57.485 55.556 0.00 0.00 34.31 3.46
1429 2161 1.143838 CATCCTGCAATCCGTCCGA 59.856 57.895 0.00 0.00 0.00 4.55
1477 2209 2.818432 AGTCAAGACGTTCTACCACGAT 59.182 45.455 0.00 0.00 43.15 3.73
1592 2324 0.333312 AGACGTCTGGGAGATGGACT 59.667 55.000 19.30 0.00 35.58 3.85
1600 2332 2.670148 GGAGATGGACTTGCGGGGT 61.670 63.158 0.00 0.00 0.00 4.95
1603 2335 1.303317 GATGGACTTGCGGGGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
1604 2336 0.035820 GATGGACTTGCGGGGTGTTA 60.036 55.000 0.00 0.00 0.00 2.41
1675 2407 1.405872 TGGTGTTATACGAGCGGGAT 58.594 50.000 0.00 0.00 0.00 3.85
1710 2442 1.228675 CCAAGCACTGGGGAAAGCT 60.229 57.895 0.00 0.00 42.17 3.74
1720 2452 0.253327 GGGGAAAGCTCGAAGGACAT 59.747 55.000 0.00 0.00 0.00 3.06
1723 2455 1.404315 GGAAAGCTCGAAGGACATCGT 60.404 52.381 0.00 0.00 43.19 3.73
1734 2466 2.100989 AGGACATCGTTCAGAGGTACC 58.899 52.381 2.73 2.73 45.19 3.34
1736 2468 3.053842 AGGACATCGTTCAGAGGTACCTA 60.054 47.826 16.29 0.00 45.19 3.08
1737 2469 3.698040 GGACATCGTTCAGAGGTACCTAA 59.302 47.826 16.29 2.40 44.74 2.69
1742 2474 4.346730 TCGTTCAGAGGTACCTAATCCAA 58.653 43.478 16.29 0.68 0.00 3.53
1743 2475 4.773674 TCGTTCAGAGGTACCTAATCCAAA 59.226 41.667 16.29 1.05 0.00 3.28
1744 2476 4.868734 CGTTCAGAGGTACCTAATCCAAAC 59.131 45.833 16.29 12.15 0.00 2.93
1801 2537 7.763172 AATAGTATTCTGCTGCTTATATCGC 57.237 36.000 0.00 0.00 0.00 4.58
1803 2539 6.516739 AGTATTCTGCTGCTTATATCGCTA 57.483 37.500 0.00 0.00 0.00 4.26
1810 2546 6.587990 TCTGCTGCTTATATCGCTATCTTTTC 59.412 38.462 0.00 0.00 0.00 2.29
1816 2552 9.634163 TGCTTATATCGCTATCTTTTCGAATTA 57.366 29.630 0.00 0.00 35.77 1.40
1825 2561 9.582223 CGCTATCTTTTCGAATTATTTTACTCC 57.418 33.333 0.00 0.00 0.00 3.85
1826 2562 9.880064 GCTATCTTTTCGAATTATTTTACTCCC 57.120 33.333 0.00 0.00 0.00 4.30
1828 2564 8.726870 ATCTTTTCGAATTATTTTACTCCCGA 57.273 30.769 0.00 0.00 0.00 5.14
1830 2566 9.001542 TCTTTTCGAATTATTTTACTCCCGAAA 57.998 29.630 0.00 0.00 41.13 3.46
1831 2567 9.615295 CTTTTCGAATTATTTTACTCCCGAAAA 57.385 29.630 15.29 15.29 45.86 2.29
1832 2568 9.962783 TTTTCGAATTATTTTACTCCCGAAAAA 57.037 25.926 14.23 2.44 45.42 1.94
1938 2674 1.136252 CGATGACGCTCTGTTGGTTTG 60.136 52.381 0.00 0.00 0.00 2.93
1946 2682 2.094234 GCTCTGTTGGTTTGTGTTTGGT 60.094 45.455 0.00 0.00 0.00 3.67
2224 2960 5.606749 ACATTACTATCTAGGCCATTGGTCA 59.393 40.000 10.50 0.00 0.00 4.02
2259 2995 3.226346 ACTGCATGAACATGTCAATGC 57.774 42.857 26.97 26.97 40.50 3.56
2281 3017 3.194968 CCTACTGTACCTCGTGACCAAAT 59.805 47.826 0.00 0.00 0.00 2.32
2399 3148 7.784470 AAATTTTGTAAACATACAGGGGCTA 57.216 32.000 0.00 0.00 0.00 3.93
2417 3166 4.829492 GGGCTAGAATTTGGCAGTATCATT 59.171 41.667 0.00 0.00 0.00 2.57
2445 3194 8.967664 TTTTGCGGGATAATACTTGTATTACT 57.032 30.769 13.43 5.67 0.00 2.24
2446 3195 8.597662 TTTGCGGGATAATACTTGTATTACTC 57.402 34.615 13.43 11.83 0.00 2.59
2447 3196 7.292713 TGCGGGATAATACTTGTATTACTCA 57.707 36.000 13.43 6.63 0.00 3.41
2448 3197 7.728148 TGCGGGATAATACTTGTATTACTCAA 58.272 34.615 13.43 0.00 0.00 3.02
2449 3198 8.205512 TGCGGGATAATACTTGTATTACTCAAA 58.794 33.333 13.43 0.00 0.00 2.69
2450 3199 9.048446 GCGGGATAATACTTGTATTACTCAAAA 57.952 33.333 13.43 0.00 0.00 2.44
2471 3220 2.601481 CAAGAATTGCAGTCACGACC 57.399 50.000 0.00 0.00 40.39 4.79
2472 3221 1.136252 CAAGAATTGCAGTCACGACCG 60.136 52.381 0.00 0.00 40.39 4.79
2473 3222 0.317160 AGAATTGCAGTCACGACCGA 59.683 50.000 0.00 0.00 0.00 4.69
2474 3223 0.438830 GAATTGCAGTCACGACCGAC 59.561 55.000 0.00 0.00 36.08 4.79
2475 3224 0.249699 AATTGCAGTCACGACCGACA 60.250 50.000 0.00 0.00 38.43 4.35
2476 3225 0.249699 ATTGCAGTCACGACCGACAA 60.250 50.000 0.00 0.00 38.43 3.18
2477 3226 0.249699 TTGCAGTCACGACCGACAAT 60.250 50.000 0.00 0.00 38.43 2.71
2478 3227 0.943835 TGCAGTCACGACCGACAATG 60.944 55.000 0.00 0.00 38.43 2.82
2479 3228 0.944311 GCAGTCACGACCGACAATGT 60.944 55.000 0.00 0.00 38.43 2.71
2480 3229 1.060713 CAGTCACGACCGACAATGTC 58.939 55.000 2.75 2.75 38.43 3.06
2492 3241 2.662700 GACAATGTCGAGACGTTCAGT 58.337 47.619 7.65 4.65 38.39 3.41
2493 3242 3.050619 GACAATGTCGAGACGTTCAGTT 58.949 45.455 7.65 0.00 38.39 3.16
2494 3243 2.794910 ACAATGTCGAGACGTTCAGTTG 59.205 45.455 7.65 1.01 38.39 3.16
2495 3244 2.065993 ATGTCGAGACGTTCAGTTGG 57.934 50.000 0.00 0.00 0.00 3.77
2496 3245 0.742505 TGTCGAGACGTTCAGTTGGT 59.257 50.000 0.00 0.00 0.00 3.67
2497 3246 1.268896 TGTCGAGACGTTCAGTTGGTC 60.269 52.381 0.00 0.00 0.00 4.02
2498 3247 0.313043 TCGAGACGTTCAGTTGGTCC 59.687 55.000 0.00 0.00 0.00 4.46
2499 3248 0.031585 CGAGACGTTCAGTTGGTCCA 59.968 55.000 0.00 0.00 0.00 4.02
2500 3249 1.336887 CGAGACGTTCAGTTGGTCCAT 60.337 52.381 0.00 0.00 0.00 3.41
2501 3250 2.094906 CGAGACGTTCAGTTGGTCCATA 60.095 50.000 0.00 0.00 0.00 2.74
2502 3251 3.251571 GAGACGTTCAGTTGGTCCATAC 58.748 50.000 0.00 0.00 0.00 2.39
2503 3252 2.028385 AGACGTTCAGTTGGTCCATACC 60.028 50.000 0.00 0.00 46.98 2.73
2504 3253 1.002773 ACGTTCAGTTGGTCCATACCC 59.997 52.381 0.00 0.00 46.16 3.69
2505 3254 1.002659 CGTTCAGTTGGTCCATACCCA 59.997 52.381 0.00 0.00 46.16 4.51
2506 3255 2.551287 CGTTCAGTTGGTCCATACCCAA 60.551 50.000 0.00 0.00 46.16 4.12
2507 3256 3.081804 GTTCAGTTGGTCCATACCCAAG 58.918 50.000 0.00 0.00 46.16 3.61
2508 3257 1.004277 TCAGTTGGTCCATACCCAAGC 59.996 52.381 0.00 0.00 46.16 4.01
2509 3258 0.331616 AGTTGGTCCATACCCAAGCC 59.668 55.000 0.00 0.00 46.16 4.35
2510 3259 0.039035 GTTGGTCCATACCCAAGCCA 59.961 55.000 0.00 0.00 46.16 4.75
2511 3260 0.039035 TTGGTCCATACCCAAGCCAC 59.961 55.000 0.00 0.00 46.16 5.01
2512 3261 1.136961 TGGTCCATACCCAAGCCACA 61.137 55.000 0.00 0.00 46.16 4.17
2513 3262 0.679960 GGTCCATACCCAAGCCACAC 60.680 60.000 0.00 0.00 40.21 3.82
2514 3263 0.037590 GTCCATACCCAAGCCACACA 59.962 55.000 0.00 0.00 0.00 3.72
2515 3264 0.774276 TCCATACCCAAGCCACACAA 59.226 50.000 0.00 0.00 0.00 3.33
2516 3265 0.887933 CCATACCCAAGCCACACAAC 59.112 55.000 0.00 0.00 0.00 3.32
2517 3266 1.614996 CATACCCAAGCCACACAACA 58.385 50.000 0.00 0.00 0.00 3.33
2518 3267 1.541147 CATACCCAAGCCACACAACAG 59.459 52.381 0.00 0.00 0.00 3.16
2519 3268 0.548989 TACCCAAGCCACACAACAGT 59.451 50.000 0.00 0.00 0.00 3.55
2520 3269 0.324275 ACCCAAGCCACACAACAGTT 60.324 50.000 0.00 0.00 0.00 3.16
2521 3270 0.385390 CCCAAGCCACACAACAGTTC 59.615 55.000 0.00 0.00 0.00 3.01
2522 3271 0.029300 CCAAGCCACACAACAGTTCG 59.971 55.000 0.00 0.00 0.00 3.95
2523 3272 0.029300 CAAGCCACACAACAGTTCGG 59.971 55.000 0.00 0.00 0.00 4.30
2524 3273 1.724582 AAGCCACACAACAGTTCGGC 61.725 55.000 4.92 4.92 39.90 5.54
2525 3274 2.477176 GCCACACAACAGTTCGGCA 61.477 57.895 7.41 0.00 39.38 5.69
2536 3285 2.634940 ACAGTTCGGCATATCCAGCTAT 59.365 45.455 0.00 0.00 34.01 2.97
2538 3287 4.283467 ACAGTTCGGCATATCCAGCTATAA 59.717 41.667 0.00 0.00 34.01 0.98
2564 3313 9.777575 AACAAAATTAAGTAACGTATATGCACC 57.222 29.630 0.00 0.00 0.00 5.01
2722 3472 1.202234 TGTTGTTGTTGTGTGCATCCG 60.202 47.619 0.00 0.00 0.00 4.18
2741 3491 2.828520 CCGATATATGCAGAGGTGAGGT 59.171 50.000 0.00 0.00 0.00 3.85
2775 3525 5.245531 TGTGTTTGTATCCACTTGATCCTC 58.754 41.667 0.00 0.00 34.76 3.71
2776 3526 4.636206 GTGTTTGTATCCACTTGATCCTCC 59.364 45.833 0.00 0.00 34.76 4.30
2777 3527 4.288366 TGTTTGTATCCACTTGATCCTCCA 59.712 41.667 0.00 0.00 34.76 3.86
2807 3557 3.254657 TCAACAAAATCTACCCTTTGGCG 59.745 43.478 0.00 0.00 36.94 5.69
2827 3577 4.973174 AAAAATCCCTGGCTGCCA 57.027 50.000 21.96 21.96 0.00 4.92
2838 3588 2.592102 TGGCTGCCAGATCTTTTTCT 57.408 45.000 19.30 0.00 0.00 2.52
2839 3589 2.165167 TGGCTGCCAGATCTTTTTCTG 58.835 47.619 19.30 0.00 42.31 3.02
2840 3590 2.224843 TGGCTGCCAGATCTTTTTCTGA 60.225 45.455 19.30 0.00 44.88 3.27
2841 3591 2.422832 GGCTGCCAGATCTTTTTCTGAG 59.577 50.000 15.17 0.00 44.88 3.35
2842 3592 3.341823 GCTGCCAGATCTTTTTCTGAGA 58.658 45.455 0.00 0.00 44.88 3.27
2843 3593 3.126686 GCTGCCAGATCTTTTTCTGAGAC 59.873 47.826 0.00 0.00 44.88 3.36
2844 3594 4.321718 CTGCCAGATCTTTTTCTGAGACA 58.678 43.478 0.00 0.00 44.88 3.41
2845 3595 4.717877 TGCCAGATCTTTTTCTGAGACAA 58.282 39.130 0.00 0.00 44.88 3.18
2846 3596 5.132502 TGCCAGATCTTTTTCTGAGACAAA 58.867 37.500 0.00 0.00 44.88 2.83
2847 3597 5.009010 TGCCAGATCTTTTTCTGAGACAAAC 59.991 40.000 0.00 0.00 44.88 2.93
2848 3598 5.563671 GCCAGATCTTTTTCTGAGACAAACC 60.564 44.000 0.00 0.00 44.88 3.27
2849 3599 5.334414 CCAGATCTTTTTCTGAGACAAACCG 60.334 44.000 0.00 0.00 44.88 4.44
2850 3600 3.963383 TCTTTTTCTGAGACAAACCGC 57.037 42.857 0.00 0.00 0.00 5.68
2851 3601 3.275143 TCTTTTTCTGAGACAAACCGCA 58.725 40.909 0.00 0.00 0.00 5.69
2852 3602 3.692101 TCTTTTTCTGAGACAAACCGCAA 59.308 39.130 0.00 0.00 0.00 4.85
2853 3603 4.156922 TCTTTTTCTGAGACAAACCGCAAA 59.843 37.500 0.00 0.00 0.00 3.68
2854 3604 4.442375 TTTTCTGAGACAAACCGCAAAA 57.558 36.364 0.00 0.00 0.00 2.44
2855 3605 3.414549 TTCTGAGACAAACCGCAAAAC 57.585 42.857 0.00 0.00 0.00 2.43
2856 3606 2.639065 TCTGAGACAAACCGCAAAACT 58.361 42.857 0.00 0.00 0.00 2.66
2857 3607 3.013921 TCTGAGACAAACCGCAAAACTT 58.986 40.909 0.00 0.00 0.00 2.66
2858 3608 3.442273 TCTGAGACAAACCGCAAAACTTT 59.558 39.130 0.00 0.00 0.00 2.66
2859 3609 4.636648 TCTGAGACAAACCGCAAAACTTTA 59.363 37.500 0.00 0.00 0.00 1.85
2860 3610 5.298276 TCTGAGACAAACCGCAAAACTTTAT 59.702 36.000 0.00 0.00 0.00 1.40
2861 3611 5.897050 TGAGACAAACCGCAAAACTTTATT 58.103 33.333 0.00 0.00 0.00 1.40
2862 3612 7.012515 TCTGAGACAAACCGCAAAACTTTATTA 59.987 33.333 0.00 0.00 0.00 0.98
2863 3613 6.913673 TGAGACAAACCGCAAAACTTTATTAC 59.086 34.615 0.00 0.00 0.00 1.89
2864 3614 7.034685 AGACAAACCGCAAAACTTTATTACT 57.965 32.000 0.00 0.00 0.00 2.24
2865 3615 7.136772 AGACAAACCGCAAAACTTTATTACTC 58.863 34.615 0.00 0.00 0.00 2.59
2866 3616 7.012989 AGACAAACCGCAAAACTTTATTACTCT 59.987 33.333 0.00 0.00 0.00 3.24
2867 3617 6.915843 ACAAACCGCAAAACTTTATTACTCTG 59.084 34.615 0.00 0.00 0.00 3.35
2868 3618 6.628919 AACCGCAAAACTTTATTACTCTGT 57.371 33.333 0.00 0.00 0.00 3.41
2869 3619 6.237313 ACCGCAAAACTTTATTACTCTGTC 57.763 37.500 0.00 0.00 0.00 3.51
2870 3620 5.761234 ACCGCAAAACTTTATTACTCTGTCA 59.239 36.000 0.00 0.00 0.00 3.58
2871 3621 6.077838 CCGCAAAACTTTATTACTCTGTCAC 58.922 40.000 0.00 0.00 0.00 3.67
2872 3622 6.293190 CCGCAAAACTTTATTACTCTGTCACA 60.293 38.462 0.00 0.00 0.00 3.58
2873 3623 7.129622 CGCAAAACTTTATTACTCTGTCACAA 58.870 34.615 0.00 0.00 0.00 3.33
2874 3624 7.803189 CGCAAAACTTTATTACTCTGTCACAAT 59.197 33.333 0.00 0.00 0.00 2.71
2875 3625 8.905702 GCAAAACTTTATTACTCTGTCACAATG 58.094 33.333 0.00 0.00 0.00 2.82
2876 3626 8.905702 CAAAACTTTATTACTCTGTCACAATGC 58.094 33.333 0.00 0.00 0.00 3.56
2877 3627 7.986085 AACTTTATTACTCTGTCACAATGCT 57.014 32.000 0.00 0.00 0.00 3.79
2878 3628 7.986085 ACTTTATTACTCTGTCACAATGCTT 57.014 32.000 0.00 0.00 0.00 3.91
2879 3629 9.502091 AACTTTATTACTCTGTCACAATGCTTA 57.498 29.630 0.00 0.00 0.00 3.09
2880 3630 8.936864 ACTTTATTACTCTGTCACAATGCTTAC 58.063 33.333 0.00 0.00 0.00 2.34
2881 3631 8.840833 TTTATTACTCTGTCACAATGCTTACA 57.159 30.769 0.00 0.00 0.00 2.41
2882 3632 6.974932 ATTACTCTGTCACAATGCTTACAG 57.025 37.500 4.46 4.46 40.54 2.74
2883 3633 3.668447 ACTCTGTCACAATGCTTACAGG 58.332 45.455 9.37 4.70 39.80 4.00
2884 3634 3.005554 CTCTGTCACAATGCTTACAGGG 58.994 50.000 9.37 3.79 39.80 4.45
2885 3635 2.637382 TCTGTCACAATGCTTACAGGGA 59.363 45.455 9.37 0.00 39.80 4.20
2886 3636 2.744202 CTGTCACAATGCTTACAGGGAC 59.256 50.000 0.00 0.00 36.53 4.46
2887 3637 1.732259 GTCACAATGCTTACAGGGACG 59.268 52.381 0.00 0.00 0.00 4.79
2888 3638 1.621317 TCACAATGCTTACAGGGACGA 59.379 47.619 0.00 0.00 0.00 4.20
2889 3639 2.037902 TCACAATGCTTACAGGGACGAA 59.962 45.455 0.00 0.00 0.00 3.85
2890 3640 2.811431 CACAATGCTTACAGGGACGAAA 59.189 45.455 0.00 0.00 0.00 3.46
2891 3641 3.440173 CACAATGCTTACAGGGACGAAAT 59.560 43.478 0.00 0.00 0.00 2.17
2892 3642 3.689649 ACAATGCTTACAGGGACGAAATC 59.310 43.478 0.00 0.00 0.00 2.17
2893 3643 3.627395 ATGCTTACAGGGACGAAATCA 57.373 42.857 0.00 0.00 0.00 2.57
2894 3644 3.410631 TGCTTACAGGGACGAAATCAA 57.589 42.857 0.00 0.00 0.00 2.57
2895 3645 3.334691 TGCTTACAGGGACGAAATCAAG 58.665 45.455 0.00 0.00 0.00 3.02
2896 3646 3.244422 TGCTTACAGGGACGAAATCAAGT 60.244 43.478 0.00 0.00 0.00 3.16
2897 3647 3.751698 GCTTACAGGGACGAAATCAAGTT 59.248 43.478 0.00 0.00 0.00 2.66
2898 3648 4.142881 GCTTACAGGGACGAAATCAAGTTC 60.143 45.833 0.00 0.00 0.00 3.01
2899 3649 3.485463 ACAGGGACGAAATCAAGTTCA 57.515 42.857 0.00 0.00 0.00 3.18
2900 3650 4.021102 ACAGGGACGAAATCAAGTTCAT 57.979 40.909 0.00 0.00 0.00 2.57
2901 3651 4.398319 ACAGGGACGAAATCAAGTTCATT 58.602 39.130 0.00 0.00 0.00 2.57
2902 3652 4.216257 ACAGGGACGAAATCAAGTTCATTG 59.784 41.667 0.00 0.00 40.52 2.82
2903 3653 3.758554 AGGGACGAAATCAAGTTCATTGG 59.241 43.478 0.00 0.00 39.54 3.16
2904 3654 3.756434 GGGACGAAATCAAGTTCATTGGA 59.244 43.478 0.00 0.00 39.54 3.53
2905 3655 4.399303 GGGACGAAATCAAGTTCATTGGAT 59.601 41.667 0.00 0.00 39.54 3.41
2906 3656 5.105756 GGGACGAAATCAAGTTCATTGGATT 60.106 40.000 0.00 0.00 39.54 3.01
2907 3657 5.801947 GGACGAAATCAAGTTCATTGGATTG 59.198 40.000 0.00 0.00 39.54 2.67
2908 3658 5.713025 ACGAAATCAAGTTCATTGGATTGG 58.287 37.500 0.00 0.00 39.54 3.16
2909 3659 4.563976 CGAAATCAAGTTCATTGGATTGGC 59.436 41.667 0.00 0.00 39.54 4.52
2910 3660 4.476628 AATCAAGTTCATTGGATTGGCC 57.523 40.909 0.00 0.00 39.54 5.36
2911 3661 3.173953 TCAAGTTCATTGGATTGGCCT 57.826 42.857 3.32 0.00 39.54 5.19
2912 3662 4.314522 TCAAGTTCATTGGATTGGCCTA 57.685 40.909 3.32 0.00 39.54 3.93
2913 3663 4.671831 TCAAGTTCATTGGATTGGCCTAA 58.328 39.130 3.32 0.00 39.54 2.69
2914 3664 4.462483 TCAAGTTCATTGGATTGGCCTAAC 59.538 41.667 3.32 0.00 39.54 2.34
2915 3665 3.365472 AGTTCATTGGATTGGCCTAACC 58.635 45.455 3.32 5.19 37.63 2.85
2916 3666 6.793265 CAAGTTCATTGGATTGGCCTAACCA 61.793 44.000 12.10 12.10 40.21 3.67
2931 3681 4.440127 CCAAGCATGGCGGCCAAC 62.440 66.667 27.70 20.73 40.58 3.77
2932 3682 4.440127 CAAGCATGGCGGCCAACC 62.440 66.667 27.70 19.06 36.95 3.77
2941 3691 3.411517 CGGCCAACCCCCAGAGAT 61.412 66.667 2.24 0.00 0.00 2.75
2942 3692 2.070039 CGGCCAACCCCCAGAGATA 61.070 63.158 2.24 0.00 0.00 1.98
2943 3693 1.839894 GGCCAACCCCCAGAGATAG 59.160 63.158 0.00 0.00 0.00 2.08
2944 3694 0.694444 GGCCAACCCCCAGAGATAGA 60.694 60.000 0.00 0.00 0.00 1.98
2945 3695 0.761802 GCCAACCCCCAGAGATAGAG 59.238 60.000 0.00 0.00 0.00 2.43
2946 3696 0.761802 CCAACCCCCAGAGATAGAGC 59.238 60.000 0.00 0.00 0.00 4.09
2947 3697 0.390860 CAACCCCCAGAGATAGAGCG 59.609 60.000 0.00 0.00 0.00 5.03
2948 3698 0.032017 AACCCCCAGAGATAGAGCGT 60.032 55.000 0.00 0.00 0.00 5.07
2949 3699 0.757188 ACCCCCAGAGATAGAGCGTG 60.757 60.000 0.00 0.00 0.00 5.34
2950 3700 1.365633 CCCCAGAGATAGAGCGTGC 59.634 63.158 0.00 0.00 0.00 5.34
2951 3701 1.112315 CCCCAGAGATAGAGCGTGCT 61.112 60.000 0.00 0.00 0.00 4.40
2952 3702 0.749649 CCCAGAGATAGAGCGTGCTT 59.250 55.000 0.00 0.00 0.00 3.91
2953 3703 1.137872 CCCAGAGATAGAGCGTGCTTT 59.862 52.381 0.00 0.00 0.00 3.51
2954 3704 2.200067 CCAGAGATAGAGCGTGCTTTG 58.800 52.381 0.00 0.00 0.00 2.77
2955 3705 1.592081 CAGAGATAGAGCGTGCTTTGC 59.408 52.381 0.00 0.00 0.00 3.68
2957 3707 2.690497 AGAGATAGAGCGTGCTTTGCTA 59.310 45.455 0.00 0.00 44.18 3.49
2958 3708 3.049206 GAGATAGAGCGTGCTTTGCTAG 58.951 50.000 0.00 0.00 44.18 3.42
2959 3709 2.428890 AGATAGAGCGTGCTTTGCTAGT 59.571 45.455 0.00 0.00 44.18 2.57
2960 3710 2.743636 TAGAGCGTGCTTTGCTAGTT 57.256 45.000 0.00 0.00 44.18 2.24
2961 3711 1.884235 AGAGCGTGCTTTGCTAGTTT 58.116 45.000 0.00 0.00 44.18 2.66
2962 3712 1.532868 AGAGCGTGCTTTGCTAGTTTG 59.467 47.619 0.00 0.00 44.18 2.93
2963 3713 1.264288 GAGCGTGCTTTGCTAGTTTGT 59.736 47.619 0.00 0.00 44.18 2.83
2964 3714 1.002468 AGCGTGCTTTGCTAGTTTGTG 60.002 47.619 0.00 0.00 41.87 3.33
2965 3715 1.002900 GCGTGCTTTGCTAGTTTGTGA 60.003 47.619 0.00 0.00 0.00 3.58
2966 3716 2.908634 CGTGCTTTGCTAGTTTGTGAG 58.091 47.619 0.00 0.00 0.00 3.51
2967 3717 2.654987 GTGCTTTGCTAGTTTGTGAGC 58.345 47.619 0.00 0.00 39.25 4.26
2968 3718 1.608590 TGCTTTGCTAGTTTGTGAGCC 59.391 47.619 0.00 0.00 37.94 4.70
2969 3719 1.882623 GCTTTGCTAGTTTGTGAGCCT 59.117 47.619 0.00 0.00 37.94 4.58
2970 3720 2.095516 GCTTTGCTAGTTTGTGAGCCTC 60.096 50.000 0.00 0.00 37.94 4.70
2971 3721 1.795768 TTGCTAGTTTGTGAGCCTCG 58.204 50.000 0.00 0.00 37.94 4.63
2972 3722 0.966179 TGCTAGTTTGTGAGCCTCGA 59.034 50.000 0.00 0.00 37.94 4.04
2973 3723 1.550524 TGCTAGTTTGTGAGCCTCGAT 59.449 47.619 0.00 0.00 37.94 3.59
2974 3724 2.758423 TGCTAGTTTGTGAGCCTCGATA 59.242 45.455 0.00 0.00 37.94 2.92
2975 3725 3.384789 TGCTAGTTTGTGAGCCTCGATAT 59.615 43.478 0.00 0.00 37.94 1.63
2976 3726 4.141937 TGCTAGTTTGTGAGCCTCGATATT 60.142 41.667 0.00 0.00 37.94 1.28
2977 3727 4.446051 GCTAGTTTGTGAGCCTCGATATTC 59.554 45.833 0.00 0.00 32.25 1.75
2978 3728 3.448686 AGTTTGTGAGCCTCGATATTCG 58.551 45.455 0.00 0.00 42.10 3.34
2979 3729 8.861834 GCTAGTTTGTGAGCCTCGATATTCGA 62.862 46.154 0.00 0.00 46.95 3.71
2992 3742 6.327279 TCGATATTCGAGCTCCTAAATTCA 57.673 37.500 8.47 0.00 44.82 2.57
2993 3743 6.925211 TCGATATTCGAGCTCCTAAATTCAT 58.075 36.000 8.47 0.00 44.82 2.57
2994 3744 6.808704 TCGATATTCGAGCTCCTAAATTCATG 59.191 38.462 8.47 0.00 44.82 3.07
2995 3745 6.808704 CGATATTCGAGCTCCTAAATTCATGA 59.191 38.462 8.47 0.00 43.74 3.07
2996 3746 7.329471 CGATATTCGAGCTCCTAAATTCATGAA 59.671 37.037 11.26 11.26 43.74 2.57
2997 3747 9.160496 GATATTCGAGCTCCTAAATTCATGAAT 57.840 33.333 15.36 15.36 0.00 2.57
2999 3749 8.908786 ATTCGAGCTCCTAAATTCATGAATAA 57.091 30.769 21.00 11.52 0.00 1.40
3000 3750 8.908786 TTCGAGCTCCTAAATTCATGAATAAT 57.091 30.769 21.00 15.00 0.00 1.28
3001 3751 9.996554 TTCGAGCTCCTAAATTCATGAATAATA 57.003 29.630 21.00 15.30 0.00 0.98
3032 3782 9.905713 AGGTTTCAAAAGATAGTCTATATTGCA 57.094 29.630 0.52 0.00 0.00 4.08
3063 3813 2.408050 CACTATTGCATCGTAGCTCCC 58.592 52.381 0.00 0.00 34.99 4.30
3064 3814 2.036475 CACTATTGCATCGTAGCTCCCT 59.964 50.000 0.00 0.00 34.99 4.20
3065 3815 2.700897 ACTATTGCATCGTAGCTCCCTT 59.299 45.455 0.00 0.00 34.99 3.95
3066 3816 2.717639 ATTGCATCGTAGCTCCCTTT 57.282 45.000 0.00 0.00 34.99 3.11
3067 3817 1.737838 TTGCATCGTAGCTCCCTTTG 58.262 50.000 0.00 0.00 34.99 2.77
3068 3818 0.613260 TGCATCGTAGCTCCCTTTGT 59.387 50.000 0.00 0.00 34.99 2.83
3069 3819 1.828595 TGCATCGTAGCTCCCTTTGTA 59.171 47.619 0.00 0.00 34.99 2.41
3070 3820 2.434336 TGCATCGTAGCTCCCTTTGTAT 59.566 45.455 0.00 0.00 34.99 2.29
3071 3821 2.802816 GCATCGTAGCTCCCTTTGTATG 59.197 50.000 0.00 0.00 0.00 2.39
3072 3822 3.492656 GCATCGTAGCTCCCTTTGTATGA 60.493 47.826 0.00 0.00 0.00 2.15
3073 3823 4.800914 GCATCGTAGCTCCCTTTGTATGAT 60.801 45.833 0.00 0.00 0.00 2.45
3074 3824 5.300752 CATCGTAGCTCCCTTTGTATGATT 58.699 41.667 0.00 0.00 0.00 2.57
3075 3825 4.693283 TCGTAGCTCCCTTTGTATGATTG 58.307 43.478 0.00 0.00 0.00 2.67
3076 3826 3.809832 CGTAGCTCCCTTTGTATGATTGG 59.190 47.826 0.00 0.00 0.00 3.16
3077 3827 4.683400 CGTAGCTCCCTTTGTATGATTGGT 60.683 45.833 0.00 0.00 0.00 3.67
3078 3828 3.624777 AGCTCCCTTTGTATGATTGGTG 58.375 45.455 0.00 0.00 0.00 4.17
3079 3829 3.266772 AGCTCCCTTTGTATGATTGGTGA 59.733 43.478 0.00 0.00 0.00 4.02
3080 3830 4.016444 GCTCCCTTTGTATGATTGGTGAA 58.984 43.478 0.00 0.00 0.00 3.18
3081 3831 4.646492 GCTCCCTTTGTATGATTGGTGAAT 59.354 41.667 0.00 0.00 0.00 2.57
3082 3832 5.827797 GCTCCCTTTGTATGATTGGTGAATA 59.172 40.000 0.00 0.00 0.00 1.75
3083 3833 6.491403 GCTCCCTTTGTATGATTGGTGAATAT 59.509 38.462 0.00 0.00 0.00 1.28
3084 3834 7.308830 GCTCCCTTTGTATGATTGGTGAATATC 60.309 40.741 0.00 0.00 0.00 1.63
3085 3835 6.710295 TCCCTTTGTATGATTGGTGAATATCG 59.290 38.462 0.00 0.00 0.00 2.92
3086 3836 6.486657 CCCTTTGTATGATTGGTGAATATCGT 59.513 38.462 0.00 0.00 0.00 3.73
3087 3837 7.307989 CCCTTTGTATGATTGGTGAATATCGTC 60.308 40.741 0.00 0.00 0.00 4.20
3088 3838 7.307989 CCTTTGTATGATTGGTGAATATCGTCC 60.308 40.741 0.00 0.00 0.00 4.79
3089 3839 6.168270 TGTATGATTGGTGAATATCGTCCA 57.832 37.500 0.00 0.00 0.00 4.02
3090 3840 5.989168 TGTATGATTGGTGAATATCGTCCAC 59.011 40.000 0.00 0.00 0.00 4.02
3091 3841 3.453424 TGATTGGTGAATATCGTCCACG 58.547 45.455 0.00 0.00 41.45 4.94
3092 3842 2.303163 TTGGTGAATATCGTCCACGG 57.697 50.000 0.00 0.00 40.29 4.94
3093 3843 0.179094 TGGTGAATATCGTCCACGGC 60.179 55.000 0.00 0.00 40.29 5.68
3094 3844 0.878961 GGTGAATATCGTCCACGGCC 60.879 60.000 0.00 0.00 40.29 6.13
3095 3845 0.179094 GTGAATATCGTCCACGGCCA 60.179 55.000 2.24 0.00 40.29 5.36
3096 3846 0.179094 TGAATATCGTCCACGGCCAC 60.179 55.000 2.24 0.00 40.29 5.01
3097 3847 0.878961 GAATATCGTCCACGGCCACC 60.879 60.000 2.24 0.00 40.29 4.61
3098 3848 1.335132 AATATCGTCCACGGCCACCT 61.335 55.000 2.24 0.00 40.29 4.00
3099 3849 1.335132 ATATCGTCCACGGCCACCTT 61.335 55.000 2.24 0.00 40.29 3.50
3100 3850 2.233605 TATCGTCCACGGCCACCTTG 62.234 60.000 2.24 0.00 40.29 3.61
3102 3852 4.947147 GTCCACGGCCACCTTGCA 62.947 66.667 2.24 0.00 0.00 4.08
3103 3853 4.196778 TCCACGGCCACCTTGCAA 62.197 61.111 2.24 0.00 0.00 4.08
3104 3854 2.990967 CCACGGCCACCTTGCAAT 60.991 61.111 2.24 0.00 0.00 3.56
3105 3855 2.568090 CACGGCCACCTTGCAATC 59.432 61.111 2.24 0.00 0.00 2.67
3106 3856 2.115052 ACGGCCACCTTGCAATCA 59.885 55.556 2.24 0.00 0.00 2.57
3107 3857 1.973281 ACGGCCACCTTGCAATCAG 60.973 57.895 2.24 0.00 0.00 2.90
3108 3858 1.675310 CGGCCACCTTGCAATCAGA 60.675 57.895 2.24 0.00 0.00 3.27
3109 3859 1.033746 CGGCCACCTTGCAATCAGAT 61.034 55.000 2.24 0.00 0.00 2.90
3110 3860 0.458669 GGCCACCTTGCAATCAGATG 59.541 55.000 0.00 0.00 0.00 2.90
3111 3861 0.179119 GCCACCTTGCAATCAGATGC 60.179 55.000 0.00 0.00 46.58 3.91
3119 3869 2.617250 GCAATCAGATGCAACGTGAA 57.383 45.000 0.00 0.00 45.70 3.18
3120 3870 3.141002 GCAATCAGATGCAACGTGAAT 57.859 42.857 0.00 0.00 45.70 2.57
3121 3871 3.103738 GCAATCAGATGCAACGTGAATC 58.896 45.455 0.00 0.00 45.70 2.52
3122 3872 3.688272 CAATCAGATGCAACGTGAATCC 58.312 45.455 0.00 0.00 32.65 3.01
3123 3873 2.768253 TCAGATGCAACGTGAATCCT 57.232 45.000 0.00 0.00 32.65 3.24
3124 3874 3.057969 TCAGATGCAACGTGAATCCTT 57.942 42.857 0.00 0.00 32.65 3.36
3125 3875 3.002791 TCAGATGCAACGTGAATCCTTC 58.997 45.455 0.00 0.00 32.65 3.46
3126 3876 3.005554 CAGATGCAACGTGAATCCTTCT 58.994 45.455 0.00 0.00 32.65 2.85
3127 3877 3.005554 AGATGCAACGTGAATCCTTCTG 58.994 45.455 0.00 0.00 32.65 3.02
3128 3878 1.522668 TGCAACGTGAATCCTTCTGG 58.477 50.000 0.00 0.00 0.00 3.86
3129 3879 0.169009 GCAACGTGAATCCTTCTGGC 59.831 55.000 0.00 0.00 0.00 4.85
3130 3880 0.443869 CAACGTGAATCCTTCTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
3131 3881 0.034896 AACGTGAATCCTTCTGGCGT 59.965 50.000 0.00 0.00 35.86 5.68
3132 3882 0.892755 ACGTGAATCCTTCTGGCGTA 59.107 50.000 0.00 0.00 33.96 4.42
3133 3883 1.274167 ACGTGAATCCTTCTGGCGTAA 59.726 47.619 0.00 0.00 33.96 3.18
3134 3884 2.289195 ACGTGAATCCTTCTGGCGTAAA 60.289 45.455 0.00 0.00 33.96 2.01
3135 3885 2.348666 CGTGAATCCTTCTGGCGTAAAG 59.651 50.000 0.00 0.00 0.00 1.85
3136 3886 3.596214 GTGAATCCTTCTGGCGTAAAGA 58.404 45.455 0.00 0.00 0.00 2.52
3137 3887 4.192317 GTGAATCCTTCTGGCGTAAAGAT 58.808 43.478 0.00 0.00 0.00 2.40
3138 3888 4.271291 GTGAATCCTTCTGGCGTAAAGATC 59.729 45.833 0.00 0.00 0.00 2.75
3139 3889 4.081142 TGAATCCTTCTGGCGTAAAGATCA 60.081 41.667 0.00 0.00 0.00 2.92
3140 3890 4.696479 ATCCTTCTGGCGTAAAGATCAT 57.304 40.909 0.00 0.00 0.00 2.45
3141 3891 4.060038 TCCTTCTGGCGTAAAGATCATC 57.940 45.455 0.00 0.00 0.00 2.92
3142 3892 3.134458 CCTTCTGGCGTAAAGATCATCC 58.866 50.000 0.00 0.00 0.00 3.51
3143 3893 2.509052 TCTGGCGTAAAGATCATCCG 57.491 50.000 0.00 0.00 0.00 4.18
3144 3894 0.861837 CTGGCGTAAAGATCATCCGC 59.138 55.000 9.63 9.63 43.35 5.54
3145 3895 0.176910 TGGCGTAAAGATCATCCGCA 59.823 50.000 16.90 4.98 45.70 5.69
3146 3896 1.295792 GGCGTAAAGATCATCCGCAA 58.704 50.000 16.90 0.00 45.70 4.85
3147 3897 1.261619 GGCGTAAAGATCATCCGCAAG 59.738 52.381 16.90 0.00 45.70 4.01
3148 3898 1.333258 GCGTAAAGATCATCCGCAAGC 60.333 52.381 12.25 0.00 43.53 4.01
3149 3899 1.071239 CGTAAAGATCATCCGCAAGCG 60.071 52.381 7.60 7.60 39.44 4.68
3150 3900 0.937304 TAAAGATCATCCGCAAGCGC 59.063 50.000 9.26 0.00 38.24 5.92
3151 3901 1.718757 AAAGATCATCCGCAAGCGCC 61.719 55.000 9.26 0.00 38.24 6.53
3152 3902 2.874648 AAGATCATCCGCAAGCGCCA 62.875 55.000 9.26 0.00 38.24 5.69
3153 3903 2.890109 GATCATCCGCAAGCGCCAG 61.890 63.158 9.26 0.00 38.24 4.85
3171 3921 2.203126 GCCTTCCCTGATGGCGAG 60.203 66.667 5.39 0.00 41.68 5.03
3172 3922 3.036429 GCCTTCCCTGATGGCGAGT 62.036 63.158 5.39 0.00 41.68 4.18
3173 3923 1.153289 CCTTCCCTGATGGCGAGTG 60.153 63.158 0.00 0.00 0.00 3.51
3174 3924 1.599047 CTTCCCTGATGGCGAGTGT 59.401 57.895 0.00 0.00 0.00 3.55
3175 3925 0.460987 CTTCCCTGATGGCGAGTGTC 60.461 60.000 0.00 0.00 0.00 3.67
3176 3926 0.904865 TTCCCTGATGGCGAGTGTCT 60.905 55.000 0.00 0.00 0.00 3.41
3177 3927 1.142748 CCCTGATGGCGAGTGTCTC 59.857 63.158 0.00 0.00 0.00 3.36
3178 3928 1.142748 CCTGATGGCGAGTGTCTCC 59.857 63.158 0.00 0.00 0.00 3.71
3179 3929 1.607801 CCTGATGGCGAGTGTCTCCA 61.608 60.000 0.00 0.00 35.49 3.86
3180 3930 0.247460 CTGATGGCGAGTGTCTCCAA 59.753 55.000 0.00 0.00 34.57 3.53
3181 3931 0.247460 TGATGGCGAGTGTCTCCAAG 59.753 55.000 0.00 0.00 34.57 3.61
3182 3932 0.532573 GATGGCGAGTGTCTCCAAGA 59.467 55.000 0.00 0.00 34.57 3.02
3183 3933 1.137872 GATGGCGAGTGTCTCCAAGAT 59.862 52.381 0.00 0.00 34.57 2.40
3184 3934 0.247460 TGGCGAGTGTCTCCAAGATG 59.753 55.000 0.00 0.00 26.51 2.90
3185 3935 1.086634 GGCGAGTGTCTCCAAGATGC 61.087 60.000 0.00 0.00 0.00 3.91
3186 3936 1.086634 GCGAGTGTCTCCAAGATGCC 61.087 60.000 0.00 0.00 0.00 4.40
3187 3937 0.803768 CGAGTGTCTCCAAGATGCCG 60.804 60.000 0.00 0.00 0.00 5.69
3188 3938 0.460987 GAGTGTCTCCAAGATGCCGG 60.461 60.000 0.00 0.00 0.00 6.13
3189 3939 1.450312 GTGTCTCCAAGATGCCGGG 60.450 63.158 2.18 0.00 0.00 5.73
3190 3940 2.190578 GTCTCCAAGATGCCGGGG 59.809 66.667 2.18 0.00 0.00 5.73
3191 3941 2.285368 TCTCCAAGATGCCGGGGT 60.285 61.111 2.18 0.00 0.00 4.95
3192 3942 2.190578 CTCCAAGATGCCGGGGTC 59.809 66.667 2.18 0.00 0.00 4.46
3193 3943 2.285368 TCCAAGATGCCGGGGTCT 60.285 61.111 2.18 0.00 0.00 3.85
3194 3944 2.124570 CCAAGATGCCGGGGTCTG 60.125 66.667 2.18 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.851838 GCCACTCAAAAATGTACGTGGTG 60.852 47.826 12.10 1.65 42.83 4.17
1 2 2.292292 GCCACTCAAAAATGTACGTGGT 59.708 45.455 12.10 0.00 42.83 4.16
111 112 2.307768 CTACCGCTAGTCCATTCTGGA 58.692 52.381 0.00 0.00 45.98 3.86
112 113 1.341531 CCTACCGCTAGTCCATTCTGG 59.658 57.143 0.00 0.00 39.43 3.86
113 114 2.294791 CTCCTACCGCTAGTCCATTCTG 59.705 54.545 0.00 0.00 0.00 3.02
114 115 2.175069 TCTCCTACCGCTAGTCCATTCT 59.825 50.000 0.00 0.00 0.00 2.40
115 116 2.584236 TCTCCTACCGCTAGTCCATTC 58.416 52.381 0.00 0.00 0.00 2.67
116 117 2.750141 TCTCCTACCGCTAGTCCATT 57.250 50.000 0.00 0.00 0.00 3.16
117 118 2.108425 TCATCTCCTACCGCTAGTCCAT 59.892 50.000 0.00 0.00 0.00 3.41
185 186 2.419198 GATGGACTCATCGCGGCT 59.581 61.111 6.13 0.00 40.15 5.52
214 230 2.649331 AACTGAACCGAGTATGGACG 57.351 50.000 0.00 0.00 0.00 4.79
536 560 6.227522 GCCCACTATACCACAACAAAAATTT 58.772 36.000 0.00 0.00 0.00 1.82
564 588 1.890489 TCTCACGGACGAGAATTTGGA 59.110 47.619 0.00 0.00 39.09 3.53
640 664 6.416415 TGTAATCCCGGTCTATTTTAAAGCA 58.584 36.000 0.00 0.00 0.00 3.91
642 666 8.502105 ACTTGTAATCCCGGTCTATTTTAAAG 57.498 34.615 0.00 5.18 0.00 1.85
756 781 7.656948 CGATTAATATGTACTCCCCCGTTTTTA 59.343 37.037 0.00 0.00 0.00 1.52
757 782 6.484308 CGATTAATATGTACTCCCCCGTTTTT 59.516 38.462 0.00 0.00 0.00 1.94
760 785 4.020839 CCGATTAATATGTACTCCCCCGTT 60.021 45.833 0.00 0.00 0.00 4.44
761 786 3.512724 CCGATTAATATGTACTCCCCCGT 59.487 47.826 0.00 0.00 0.00 5.28
762 787 3.765511 TCCGATTAATATGTACTCCCCCG 59.234 47.826 0.00 0.00 0.00 5.73
763 788 4.382793 GCTCCGATTAATATGTACTCCCCC 60.383 50.000 0.00 0.00 0.00 5.40
764 789 4.222145 TGCTCCGATTAATATGTACTCCCC 59.778 45.833 0.00 0.00 0.00 4.81
765 790 5.401531 TGCTCCGATTAATATGTACTCCC 57.598 43.478 0.00 0.00 0.00 4.30
766 791 4.865365 GCTGCTCCGATTAATATGTACTCC 59.135 45.833 0.00 0.00 0.00 3.85
767 792 4.865365 GGCTGCTCCGATTAATATGTACTC 59.135 45.833 0.00 0.00 0.00 2.59
768 793 4.822026 GGCTGCTCCGATTAATATGTACT 58.178 43.478 0.00 0.00 0.00 2.73
817 842 3.573538 ACACTTTTGAGTAATGGCATGCA 59.426 39.130 21.36 6.13 0.00 3.96
843 868 5.220586 CGTCTTCCACAAAACGTATATGCAT 60.221 40.000 3.79 3.79 0.00 3.96
844 869 4.092237 CGTCTTCCACAAAACGTATATGCA 59.908 41.667 0.00 0.00 0.00 3.96
846 871 6.397831 TTCGTCTTCCACAAAACGTATATG 57.602 37.500 0.00 0.00 36.55 1.78
847 872 6.424509 TGTTTCGTCTTCCACAAAACGTATAT 59.575 34.615 0.00 0.00 36.55 0.86
848 873 5.752472 TGTTTCGTCTTCCACAAAACGTATA 59.248 36.000 0.00 0.00 36.55 1.47
849 874 4.571580 TGTTTCGTCTTCCACAAAACGTAT 59.428 37.500 0.00 0.00 36.55 3.06
856 881 2.404923 TGGTGTTTCGTCTTCCACAA 57.595 45.000 0.00 0.00 0.00 3.33
884 909 1.757118 TGGAATACGGAGAGGCTGAAG 59.243 52.381 0.00 0.00 0.00 3.02
885 910 1.480954 GTGGAATACGGAGAGGCTGAA 59.519 52.381 0.00 0.00 0.00 3.02
897 924 2.622436 GAGGCAGACAGTGTGGAATAC 58.378 52.381 0.00 0.00 0.00 1.89
928 955 4.344102 CGAGGTATTAATGGAGAGTTGGGA 59.656 45.833 0.00 0.00 0.00 4.37
953 984 2.230266 TGTATTGTGCTCTACTGTGCGA 59.770 45.455 0.00 0.00 35.65 5.10
1001 1035 1.596934 GTCTTCTCCATCGGGTGCA 59.403 57.895 0.00 0.00 34.93 4.57
1004 1038 1.689582 GGGGTCTTCTCCATCGGGT 60.690 63.158 0.00 0.00 34.93 5.28
1097 1131 3.872728 CGACCTCGACGGCGATCA 61.873 66.667 16.81 0.00 46.80 2.92
1142 1176 1.378646 GGTACAAGGGGCTGAAGGC 60.379 63.158 0.00 0.00 40.90 4.35
1143 1177 0.253327 GAGGTACAAGGGGCTGAAGG 59.747 60.000 0.00 0.00 0.00 3.46
1144 1178 0.253327 GGAGGTACAAGGGGCTGAAG 59.747 60.000 0.00 0.00 0.00 3.02
1147 1181 1.201429 ACTGGAGGTACAAGGGGCTG 61.201 60.000 0.00 0.00 0.00 4.85
1148 1182 1.161113 ACTGGAGGTACAAGGGGCT 59.839 57.895 0.00 0.00 0.00 5.19
1149 1183 1.299976 CACTGGAGGTACAAGGGGC 59.700 63.158 0.00 0.00 0.00 5.80
1155 1883 1.348064 CCTGGAACACTGGAGGTACA 58.652 55.000 0.00 0.00 40.42 2.90
1157 1885 2.158279 TGTACCTGGAACACTGGAGGTA 60.158 50.000 0.00 0.00 39.59 3.08
1186 1914 4.744570 TCCTCTTGTAGCACGTGATAAAG 58.255 43.478 22.23 20.86 0.00 1.85
1191 1922 2.560981 TGAATCCTCTTGTAGCACGTGA 59.439 45.455 22.23 0.00 0.00 4.35
1206 1937 6.586344 TGAAGTGATCTAGGATGTTGAATCC 58.414 40.000 0.00 0.00 38.47 3.01
1217 1948 7.560368 AGGACATAAAACTGAAGTGATCTAGG 58.440 38.462 0.00 0.00 0.00 3.02
1221 1952 8.099364 TCAAAGGACATAAAACTGAAGTGATC 57.901 34.615 0.00 0.00 0.00 2.92
1223 1954 7.873719 TTCAAAGGACATAAAACTGAAGTGA 57.126 32.000 0.00 0.00 0.00 3.41
1224 1955 8.571336 AGATTCAAAGGACATAAAACTGAAGTG 58.429 33.333 0.00 0.00 0.00 3.16
1226 1957 8.571336 ACAGATTCAAAGGACATAAAACTGAAG 58.429 33.333 0.00 0.00 0.00 3.02
1227 1958 8.463930 ACAGATTCAAAGGACATAAAACTGAA 57.536 30.769 0.00 0.00 0.00 3.02
1230 1961 6.434340 GGGACAGATTCAAAGGACATAAAACT 59.566 38.462 0.00 0.00 0.00 2.66
1231 1962 6.621613 GGGACAGATTCAAAGGACATAAAAC 58.378 40.000 0.00 0.00 0.00 2.43
1233 1964 4.941263 CGGGACAGATTCAAAGGACATAAA 59.059 41.667 0.00 0.00 0.00 1.40
1235 1966 3.681594 GCGGGACAGATTCAAAGGACATA 60.682 47.826 0.00 0.00 0.00 2.29
1236 1967 2.941415 GCGGGACAGATTCAAAGGACAT 60.941 50.000 0.00 0.00 0.00 3.06
1237 1968 1.610624 GCGGGACAGATTCAAAGGACA 60.611 52.381 0.00 0.00 0.00 4.02
1238 1969 1.087501 GCGGGACAGATTCAAAGGAC 58.912 55.000 0.00 0.00 0.00 3.85
1239 1970 0.690192 TGCGGGACAGATTCAAAGGA 59.310 50.000 0.00 0.00 0.00 3.36
1240 1971 1.402968 CATGCGGGACAGATTCAAAGG 59.597 52.381 0.00 0.00 0.00 3.11
1241 1972 1.402968 CCATGCGGGACAGATTCAAAG 59.597 52.381 0.00 0.00 40.01 2.77
1242 1973 1.271871 ACCATGCGGGACAGATTCAAA 60.272 47.619 0.60 0.00 41.15 2.69
1245 1976 1.718757 GCACCATGCGGGACAGATTC 61.719 60.000 0.60 0.00 41.15 2.52
1246 1977 1.750399 GCACCATGCGGGACAGATT 60.750 57.895 0.60 0.00 41.15 2.40
1276 2008 1.541588 GAACAAACCAGATGTCCAGCC 59.458 52.381 0.00 0.00 0.00 4.85
1279 2011 2.582052 GTGGAACAAACCAGATGTCCA 58.418 47.619 0.00 0.00 44.16 4.02
1291 2023 1.907807 GCCATGGCAGGTGGAACAA 60.908 57.895 32.08 0.00 40.31 2.83
1316 2048 2.696707 AGGTACACTTGTTCTTGTCCGA 59.303 45.455 0.00 0.00 0.00 4.55
1335 2067 2.228822 CCCGTTTTGATGAAACAGGAGG 59.771 50.000 11.37 2.13 45.00 4.30
1342 2074 2.288152 GCTGAAGCCCGTTTTGATGAAA 60.288 45.455 0.00 0.00 34.31 2.69
1369 2101 1.180456 TGTAGCTCGTGGGGACGAAA 61.180 55.000 0.00 0.00 41.87 3.46
1373 2105 2.184579 GCTGTAGCTCGTGGGGAC 59.815 66.667 0.00 0.00 38.21 4.46
1429 2161 3.849951 CGGTATGGGCAGGCGACT 61.850 66.667 0.00 0.00 46.44 4.18
1464 2196 2.947652 TCCTCCTTATCGTGGTAGAACG 59.052 50.000 0.00 0.00 44.92 3.95
1477 2209 2.672098 GTCCTCTCATGCTCCTCCTTA 58.328 52.381 0.00 0.00 0.00 2.69
1600 2332 3.577667 CACCTTGACGATACGGTTAACA 58.422 45.455 8.10 0.00 0.00 2.41
1603 2335 2.170166 ACCACCTTGACGATACGGTTA 58.830 47.619 0.00 0.00 0.00 2.85
1604 2336 0.971386 ACCACCTTGACGATACGGTT 59.029 50.000 0.00 0.00 0.00 4.44
1656 2388 1.067974 CATCCCGCTCGTATAACACCA 59.932 52.381 0.00 0.00 0.00 4.17
1657 2389 1.604693 CCATCCCGCTCGTATAACACC 60.605 57.143 0.00 0.00 0.00 4.16
1710 2442 1.472878 CCTCTGAACGATGTCCTTCGA 59.527 52.381 9.23 0.00 41.62 3.71
1720 2452 3.972133 TGGATTAGGTACCTCTGAACGA 58.028 45.455 20.32 0.00 0.00 3.85
1723 2455 6.443849 AGATGTTTGGATTAGGTACCTCTGAA 59.556 38.462 20.32 8.01 0.00 3.02
1775 2511 8.963130 GCGATATAAGCAGCAGAATACTATTAG 58.037 37.037 0.00 0.00 34.19 1.73
1776 2512 8.687242 AGCGATATAAGCAGCAGAATACTATTA 58.313 33.333 0.00 0.00 37.01 0.98
1777 2513 7.551585 AGCGATATAAGCAGCAGAATACTATT 58.448 34.615 0.00 0.00 37.01 1.73
1778 2514 7.106439 AGCGATATAAGCAGCAGAATACTAT 57.894 36.000 0.00 0.00 37.01 2.12
1779 2515 6.516739 AGCGATATAAGCAGCAGAATACTA 57.483 37.500 0.00 0.00 37.01 1.82
1780 2516 5.398603 AGCGATATAAGCAGCAGAATACT 57.601 39.130 0.00 0.00 37.01 2.12
1781 2517 7.199766 AGATAGCGATATAAGCAGCAGAATAC 58.800 38.462 0.00 0.00 37.01 1.89
1782 2518 7.340122 AGATAGCGATATAAGCAGCAGAATA 57.660 36.000 0.00 0.00 37.01 1.75
1783 2519 6.219417 AGATAGCGATATAAGCAGCAGAAT 57.781 37.500 0.00 0.00 37.01 2.40
1784 2520 5.651387 AGATAGCGATATAAGCAGCAGAA 57.349 39.130 0.00 0.00 37.01 3.02
1785 2521 5.651387 AAGATAGCGATATAAGCAGCAGA 57.349 39.130 0.00 0.00 37.01 4.26
1803 2539 8.726870 TCGGGAGTAAAATAATTCGAAAAGAT 57.273 30.769 0.00 0.00 0.00 2.40
1886 2622 9.889128 CCACCAAATTTCCAAATCAGTATAAAT 57.111 29.630 0.00 0.00 0.00 1.40
1887 2623 8.875168 ACCACCAAATTTCCAAATCAGTATAAA 58.125 29.630 0.00 0.00 0.00 1.40
1888 2624 8.310382 CACCACCAAATTTCCAAATCAGTATAA 58.690 33.333 0.00 0.00 0.00 0.98
1889 2625 7.578571 GCACCACCAAATTTCCAAATCAGTATA 60.579 37.037 0.00 0.00 0.00 1.47
1890 2626 6.700352 CACCACCAAATTTCCAAATCAGTAT 58.300 36.000 0.00 0.00 0.00 2.12
1891 2627 5.510520 GCACCACCAAATTTCCAAATCAGTA 60.511 40.000 0.00 0.00 0.00 2.74
1892 2628 4.743348 GCACCACCAAATTTCCAAATCAGT 60.743 41.667 0.00 0.00 0.00 3.41
1893 2629 3.747529 GCACCACCAAATTTCCAAATCAG 59.252 43.478 0.00 0.00 0.00 2.90
1894 2630 3.737850 GCACCACCAAATTTCCAAATCA 58.262 40.909 0.00 0.00 0.00 2.57
1895 2631 2.736192 CGCACCACCAAATTTCCAAATC 59.264 45.455 0.00 0.00 0.00 2.17
1924 2660 2.184448 CAAACACAAACCAACAGAGCG 58.816 47.619 0.00 0.00 0.00 5.03
1929 2665 4.748892 CACATACCAAACACAAACCAACA 58.251 39.130 0.00 0.00 0.00 3.33
1938 2674 4.346734 CAGATCTGCACATACCAAACAC 57.653 45.455 10.38 0.00 0.00 3.32
2176 2912 2.543238 GGGCTAGTCGTCCATCTTTACG 60.543 54.545 0.00 0.00 37.34 3.18
2224 2960 8.965819 TGTTCATGCAGTACAAATGGTAATATT 58.034 29.630 0.00 0.00 32.72 1.28
2259 2995 1.830279 TGGTCACGAGGTACAGTAGG 58.170 55.000 0.00 0.00 0.00 3.18
2281 3017 4.195416 TGGATTTGCTCATGCGTAATACA 58.805 39.130 0.00 0.00 43.34 2.29
2391 3140 1.341383 ACTGCCAAATTCTAGCCCCTG 60.341 52.381 0.00 0.00 0.00 4.45
2421 3170 8.205512 TGAGTAATACAAGTATTATCCCGCAAA 58.794 33.333 13.90 0.00 39.40 3.68
2422 3171 7.728148 TGAGTAATACAAGTATTATCCCGCAA 58.272 34.615 13.90 0.00 39.40 4.85
2423 3172 7.292713 TGAGTAATACAAGTATTATCCCGCA 57.707 36.000 13.90 8.07 39.40 5.69
2437 3186 9.844790 CTGCAATTCTTGATTTTGAGTAATACA 57.155 29.630 0.00 0.00 0.00 2.29
2438 3187 9.846248 ACTGCAATTCTTGATTTTGAGTAATAC 57.154 29.630 0.00 0.00 0.00 1.89
2441 3190 7.862372 GTGACTGCAATTCTTGATTTTGAGTAA 59.138 33.333 0.00 0.00 0.00 2.24
2442 3191 7.362662 GTGACTGCAATTCTTGATTTTGAGTA 58.637 34.615 0.00 0.00 0.00 2.59
2443 3192 6.211515 GTGACTGCAATTCTTGATTTTGAGT 58.788 36.000 0.00 0.00 0.00 3.41
2444 3193 5.341462 CGTGACTGCAATTCTTGATTTTGAG 59.659 40.000 0.00 0.00 0.00 3.02
2445 3194 5.008514 TCGTGACTGCAATTCTTGATTTTGA 59.991 36.000 0.00 0.00 0.00 2.69
2446 3195 5.116074 GTCGTGACTGCAATTCTTGATTTTG 59.884 40.000 0.00 0.00 0.00 2.44
2447 3196 5.215160 GTCGTGACTGCAATTCTTGATTTT 58.785 37.500 0.00 0.00 0.00 1.82
2448 3197 4.320494 GGTCGTGACTGCAATTCTTGATTT 60.320 41.667 0.00 0.00 0.00 2.17
2449 3198 3.189287 GGTCGTGACTGCAATTCTTGATT 59.811 43.478 0.00 0.00 0.00 2.57
2450 3199 2.744202 GGTCGTGACTGCAATTCTTGAT 59.256 45.455 0.00 0.00 0.00 2.57
2451 3200 2.143122 GGTCGTGACTGCAATTCTTGA 58.857 47.619 0.00 0.00 0.00 3.02
2452 3201 1.136252 CGGTCGTGACTGCAATTCTTG 60.136 52.381 0.00 0.00 0.00 3.02
2453 3202 1.148310 CGGTCGTGACTGCAATTCTT 58.852 50.000 0.00 0.00 0.00 2.52
2454 3203 0.317160 TCGGTCGTGACTGCAATTCT 59.683 50.000 3.91 0.00 37.60 2.40
2455 3204 0.438830 GTCGGTCGTGACTGCAATTC 59.561 55.000 3.91 0.00 37.60 2.17
2456 3205 0.249699 TGTCGGTCGTGACTGCAATT 60.250 50.000 3.91 0.00 39.64 2.32
2457 3206 0.249699 TTGTCGGTCGTGACTGCAAT 60.250 50.000 3.91 0.00 39.64 3.56
2458 3207 0.249699 ATTGTCGGTCGTGACTGCAA 60.250 50.000 15.77 15.77 39.64 4.08
2459 3208 0.943835 CATTGTCGGTCGTGACTGCA 60.944 55.000 3.91 3.40 39.64 4.41
2460 3209 0.944311 ACATTGTCGGTCGTGACTGC 60.944 55.000 3.91 0.95 39.64 4.40
2461 3210 1.060713 GACATTGTCGGTCGTGACTG 58.939 55.000 0.13 2.32 39.64 3.51
2462 3211 3.491581 GACATTGTCGGTCGTGACT 57.508 52.632 0.13 0.00 39.64 3.41
2472 3221 2.662700 ACTGAACGTCTCGACATTGTC 58.337 47.619 6.73 6.73 0.00 3.18
2473 3222 2.794910 CAACTGAACGTCTCGACATTGT 59.205 45.455 0.00 0.00 0.00 2.71
2474 3223 2.155732 CCAACTGAACGTCTCGACATTG 59.844 50.000 0.00 0.00 0.00 2.82
2475 3224 2.223971 ACCAACTGAACGTCTCGACATT 60.224 45.455 0.00 0.00 0.00 2.71
2476 3225 1.340248 ACCAACTGAACGTCTCGACAT 59.660 47.619 0.00 0.00 0.00 3.06
2477 3226 0.742505 ACCAACTGAACGTCTCGACA 59.257 50.000 0.00 0.00 0.00 4.35
2478 3227 1.406447 GACCAACTGAACGTCTCGAC 58.594 55.000 0.00 0.00 0.00 4.20
2479 3228 0.313043 GGACCAACTGAACGTCTCGA 59.687 55.000 0.00 0.00 0.00 4.04
2480 3229 0.031585 TGGACCAACTGAACGTCTCG 59.968 55.000 0.00 0.00 0.00 4.04
2481 3230 2.457366 ATGGACCAACTGAACGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
2482 3231 2.028385 GGTATGGACCAACTGAACGTCT 60.028 50.000 0.00 0.00 46.12 4.18
2483 3232 2.344025 GGTATGGACCAACTGAACGTC 58.656 52.381 0.00 0.00 46.12 4.34
2484 3233 2.467566 GGTATGGACCAACTGAACGT 57.532 50.000 0.00 0.00 46.12 3.99
2494 3243 0.679960 GTGTGGCTTGGGTATGGACC 60.680 60.000 0.00 0.00 46.13 4.46
2495 3244 0.037590 TGTGTGGCTTGGGTATGGAC 59.962 55.000 0.00 0.00 0.00 4.02
2496 3245 0.774276 TTGTGTGGCTTGGGTATGGA 59.226 50.000 0.00 0.00 0.00 3.41
2497 3246 0.887933 GTTGTGTGGCTTGGGTATGG 59.112 55.000 0.00 0.00 0.00 2.74
2498 3247 1.541147 CTGTTGTGTGGCTTGGGTATG 59.459 52.381 0.00 0.00 0.00 2.39
2499 3248 1.144913 ACTGTTGTGTGGCTTGGGTAT 59.855 47.619 0.00 0.00 0.00 2.73
2500 3249 0.548989 ACTGTTGTGTGGCTTGGGTA 59.451 50.000 0.00 0.00 0.00 3.69
2501 3250 0.324275 AACTGTTGTGTGGCTTGGGT 60.324 50.000 0.00 0.00 0.00 4.51
2502 3251 0.385390 GAACTGTTGTGTGGCTTGGG 59.615 55.000 0.00 0.00 0.00 4.12
2503 3252 0.029300 CGAACTGTTGTGTGGCTTGG 59.971 55.000 0.00 0.00 0.00 3.61
2504 3253 0.029300 CCGAACTGTTGTGTGGCTTG 59.971 55.000 0.00 0.00 0.00 4.01
2505 3254 1.724582 GCCGAACTGTTGTGTGGCTT 61.725 55.000 0.00 0.00 41.37 4.35
2506 3255 2.186826 GCCGAACTGTTGTGTGGCT 61.187 57.895 0.00 0.00 41.37 4.75
2507 3256 1.795170 ATGCCGAACTGTTGTGTGGC 61.795 55.000 12.93 12.93 43.46 5.01
2508 3257 1.518325 TATGCCGAACTGTTGTGTGG 58.482 50.000 0.00 0.00 0.00 4.17
2509 3258 2.095853 GGATATGCCGAACTGTTGTGTG 59.904 50.000 0.00 0.00 0.00 3.82
2510 3259 2.290008 TGGATATGCCGAACTGTTGTGT 60.290 45.455 0.00 0.00 40.66 3.72
2511 3260 2.352651 CTGGATATGCCGAACTGTTGTG 59.647 50.000 0.00 0.00 40.66 3.33
2512 3261 2.632377 CTGGATATGCCGAACTGTTGT 58.368 47.619 0.00 0.00 40.66 3.32
2513 3262 1.331756 GCTGGATATGCCGAACTGTTG 59.668 52.381 0.00 0.00 40.66 3.33
2514 3263 1.210478 AGCTGGATATGCCGAACTGTT 59.790 47.619 0.00 0.00 40.66 3.16
2515 3264 0.833287 AGCTGGATATGCCGAACTGT 59.167 50.000 0.00 0.00 40.66 3.55
2516 3265 2.820059 TAGCTGGATATGCCGAACTG 57.180 50.000 0.00 0.00 40.66 3.16
2517 3266 5.221641 TGTTTATAGCTGGATATGCCGAACT 60.222 40.000 0.00 0.00 40.66 3.01
2518 3267 4.994852 TGTTTATAGCTGGATATGCCGAAC 59.005 41.667 0.00 0.00 40.66 3.95
2519 3268 5.222079 TGTTTATAGCTGGATATGCCGAA 57.778 39.130 0.00 0.00 40.66 4.30
2520 3269 4.882842 TGTTTATAGCTGGATATGCCGA 57.117 40.909 0.00 0.00 40.66 5.54
2521 3270 5.940192 TTTGTTTATAGCTGGATATGCCG 57.060 39.130 0.00 0.00 40.66 5.69
2538 3287 9.777575 GGTGCATATACGTTACTTAATTTTGTT 57.222 29.630 0.00 0.00 0.00 2.83
2703 3453 1.064803 TCGGATGCACACAACAACAAC 59.935 47.619 0.00 0.00 0.00 3.32
2707 3457 5.671742 CATATATCGGATGCACACAACAA 57.328 39.130 0.00 0.00 0.00 2.83
2722 3472 4.526262 ACTCACCTCACCTCTGCATATATC 59.474 45.833 0.00 0.00 0.00 1.63
2736 3486 5.650266 ACAAACACAATTTACACTCACCTCA 59.350 36.000 0.00 0.00 0.00 3.86
2826 3576 5.683859 CGGTTTGTCTCAGAAAAAGATCTG 58.316 41.667 0.00 0.00 46.62 2.90
2827 3577 4.214332 GCGGTTTGTCTCAGAAAAAGATCT 59.786 41.667 0.00 0.00 0.00 2.75
2828 3578 4.024048 TGCGGTTTGTCTCAGAAAAAGATC 60.024 41.667 0.00 0.00 0.00 2.75
2829 3579 3.882888 TGCGGTTTGTCTCAGAAAAAGAT 59.117 39.130 0.00 0.00 0.00 2.40
2830 3580 3.275143 TGCGGTTTGTCTCAGAAAAAGA 58.725 40.909 0.00 0.00 0.00 2.52
2831 3581 3.691049 TGCGGTTTGTCTCAGAAAAAG 57.309 42.857 0.00 0.00 0.00 2.27
2832 3582 4.442375 TTTGCGGTTTGTCTCAGAAAAA 57.558 36.364 0.00 0.00 0.00 1.94
2833 3583 4.082463 AGTTTTGCGGTTTGTCTCAGAAAA 60.082 37.500 0.00 0.00 0.00 2.29
2834 3584 3.442273 AGTTTTGCGGTTTGTCTCAGAAA 59.558 39.130 0.00 0.00 0.00 2.52
2835 3585 3.013921 AGTTTTGCGGTTTGTCTCAGAA 58.986 40.909 0.00 0.00 0.00 3.02
2836 3586 2.639065 AGTTTTGCGGTTTGTCTCAGA 58.361 42.857 0.00 0.00 0.00 3.27
2837 3587 3.420839 AAGTTTTGCGGTTTGTCTCAG 57.579 42.857 0.00 0.00 0.00 3.35
2838 3588 3.859411 AAAGTTTTGCGGTTTGTCTCA 57.141 38.095 0.00 0.00 0.00 3.27
2839 3589 7.136772 AGTAATAAAGTTTTGCGGTTTGTCTC 58.863 34.615 0.00 0.00 0.00 3.36
2840 3590 7.012989 AGAGTAATAAAGTTTTGCGGTTTGTCT 59.987 33.333 0.00 0.00 0.00 3.41
2841 3591 7.112984 CAGAGTAATAAAGTTTTGCGGTTTGTC 59.887 37.037 0.00 0.00 0.00 3.18
2842 3592 6.915843 CAGAGTAATAAAGTTTTGCGGTTTGT 59.084 34.615 0.00 0.00 0.00 2.83
2843 3593 6.915843 ACAGAGTAATAAAGTTTTGCGGTTTG 59.084 34.615 0.00 0.00 0.00 2.93
2844 3594 7.034685 ACAGAGTAATAAAGTTTTGCGGTTT 57.965 32.000 0.00 0.00 0.00 3.27
2845 3595 6.261381 TGACAGAGTAATAAAGTTTTGCGGTT 59.739 34.615 0.00 0.00 0.00 4.44
2846 3596 5.761234 TGACAGAGTAATAAAGTTTTGCGGT 59.239 36.000 0.00 0.00 0.00 5.68
2847 3597 6.077838 GTGACAGAGTAATAAAGTTTTGCGG 58.922 40.000 0.00 0.00 0.00 5.69
2848 3598 6.655062 TGTGACAGAGTAATAAAGTTTTGCG 58.345 36.000 0.00 0.00 0.00 4.85
2849 3599 8.905702 CATTGTGACAGAGTAATAAAGTTTTGC 58.094 33.333 0.00 0.00 0.00 3.68
2850 3600 8.905702 GCATTGTGACAGAGTAATAAAGTTTTG 58.094 33.333 0.00 0.00 0.00 2.44
2851 3601 8.850156 AGCATTGTGACAGAGTAATAAAGTTTT 58.150 29.630 0.00 0.00 0.00 2.43
2852 3602 8.396272 AGCATTGTGACAGAGTAATAAAGTTT 57.604 30.769 0.00 0.00 0.00 2.66
2853 3603 7.986085 AGCATTGTGACAGAGTAATAAAGTT 57.014 32.000 0.00 0.00 0.00 2.66
2854 3604 7.986085 AAGCATTGTGACAGAGTAATAAAGT 57.014 32.000 0.00 0.00 0.00 2.66
2855 3605 8.935844 TGTAAGCATTGTGACAGAGTAATAAAG 58.064 33.333 0.00 0.00 0.00 1.85
2856 3606 8.840833 TGTAAGCATTGTGACAGAGTAATAAA 57.159 30.769 0.00 0.00 0.00 1.40
2857 3607 7.549134 CCTGTAAGCATTGTGACAGAGTAATAA 59.451 37.037 13.14 0.00 41.51 1.40
2858 3608 7.041721 CCTGTAAGCATTGTGACAGAGTAATA 58.958 38.462 13.14 0.00 41.51 0.98
2859 3609 5.877012 CCTGTAAGCATTGTGACAGAGTAAT 59.123 40.000 13.14 0.00 41.51 1.89
2860 3610 5.237815 CCTGTAAGCATTGTGACAGAGTAA 58.762 41.667 13.14 0.00 41.51 2.24
2861 3611 4.322725 CCCTGTAAGCATTGTGACAGAGTA 60.323 45.833 13.14 0.00 41.51 2.59
2862 3612 3.557898 CCCTGTAAGCATTGTGACAGAGT 60.558 47.826 13.14 0.00 41.51 3.24
2863 3613 3.005554 CCCTGTAAGCATTGTGACAGAG 58.994 50.000 13.14 1.08 41.51 3.35
2864 3614 2.637382 TCCCTGTAAGCATTGTGACAGA 59.363 45.455 13.14 0.00 41.51 3.41
2865 3615 2.744202 GTCCCTGTAAGCATTGTGACAG 59.256 50.000 7.40 7.40 39.22 3.51
2866 3616 2.778299 GTCCCTGTAAGCATTGTGACA 58.222 47.619 0.00 0.00 0.00 3.58
2867 3617 1.732259 CGTCCCTGTAAGCATTGTGAC 59.268 52.381 0.00 0.00 0.00 3.67
2868 3618 1.621317 TCGTCCCTGTAAGCATTGTGA 59.379 47.619 0.00 0.00 0.00 3.58
2869 3619 2.093306 TCGTCCCTGTAAGCATTGTG 57.907 50.000 0.00 0.00 0.00 3.33
2870 3620 2.851263 TTCGTCCCTGTAAGCATTGT 57.149 45.000 0.00 0.00 0.00 2.71
2871 3621 3.689161 TGATTTCGTCCCTGTAAGCATTG 59.311 43.478 0.00 0.00 0.00 2.82
2872 3622 3.950397 TGATTTCGTCCCTGTAAGCATT 58.050 40.909 0.00 0.00 0.00 3.56
2873 3623 3.627395 TGATTTCGTCCCTGTAAGCAT 57.373 42.857 0.00 0.00 0.00 3.79
2874 3624 3.244422 ACTTGATTTCGTCCCTGTAAGCA 60.244 43.478 0.00 0.00 0.00 3.91
2875 3625 3.335579 ACTTGATTTCGTCCCTGTAAGC 58.664 45.455 0.00 0.00 0.00 3.09
2876 3626 4.994852 TGAACTTGATTTCGTCCCTGTAAG 59.005 41.667 0.00 0.00 0.00 2.34
2877 3627 4.963373 TGAACTTGATTTCGTCCCTGTAA 58.037 39.130 0.00 0.00 0.00 2.41
2878 3628 4.610605 TGAACTTGATTTCGTCCCTGTA 57.389 40.909 0.00 0.00 0.00 2.74
2879 3629 3.485463 TGAACTTGATTTCGTCCCTGT 57.515 42.857 0.00 0.00 0.00 4.00
2880 3630 4.379813 CCAATGAACTTGATTTCGTCCCTG 60.380 45.833 0.00 0.00 36.97 4.45
2881 3631 3.758554 CCAATGAACTTGATTTCGTCCCT 59.241 43.478 0.00 0.00 36.97 4.20
2882 3632 3.756434 TCCAATGAACTTGATTTCGTCCC 59.244 43.478 0.00 0.00 36.97 4.46
2883 3633 5.567138 ATCCAATGAACTTGATTTCGTCC 57.433 39.130 0.00 0.00 36.97 4.79
2884 3634 5.801947 CCAATCCAATGAACTTGATTTCGTC 59.198 40.000 0.00 0.00 36.97 4.20
2885 3635 5.713025 CCAATCCAATGAACTTGATTTCGT 58.287 37.500 0.00 0.00 36.97 3.85
2886 3636 4.563976 GCCAATCCAATGAACTTGATTTCG 59.436 41.667 0.00 0.00 36.97 3.46
2887 3637 4.872124 GGCCAATCCAATGAACTTGATTTC 59.128 41.667 0.00 0.00 36.97 2.17
2888 3638 4.533311 AGGCCAATCCAATGAACTTGATTT 59.467 37.500 5.01 0.00 36.97 2.17
2889 3639 4.098894 AGGCCAATCCAATGAACTTGATT 58.901 39.130 5.01 0.00 36.97 2.57
2890 3640 3.716431 AGGCCAATCCAATGAACTTGAT 58.284 40.909 5.01 0.00 36.97 2.57
2891 3641 3.173953 AGGCCAATCCAATGAACTTGA 57.826 42.857 5.01 0.00 36.97 3.02
2892 3642 4.381932 GGTTAGGCCAATCCAATGAACTTG 60.382 45.833 5.01 0.00 37.29 3.16
2893 3643 3.769300 GGTTAGGCCAATCCAATGAACTT 59.231 43.478 5.01 0.00 37.29 2.66
2894 3644 3.245586 TGGTTAGGCCAATCCAATGAACT 60.246 43.478 5.01 0.00 45.94 3.01
2895 3645 3.096092 TGGTTAGGCCAATCCAATGAAC 58.904 45.455 5.01 0.00 45.94 3.18
2896 3646 3.464720 TGGTTAGGCCAATCCAATGAA 57.535 42.857 5.01 0.00 45.94 2.57
2906 3656 1.682005 GCCATGCTTGGTTAGGCCA 60.682 57.895 19.05 0.00 45.57 5.36
2907 3657 2.774799 CGCCATGCTTGGTTAGGCC 61.775 63.158 19.05 0.00 45.57 5.19
2908 3658 2.774799 CCGCCATGCTTGGTTAGGC 61.775 63.158 19.05 4.34 45.57 3.93
2909 3659 2.774799 GCCGCCATGCTTGGTTAGG 61.775 63.158 19.05 18.84 45.57 2.69
2910 3660 2.774799 GGCCGCCATGCTTGGTTAG 61.775 63.158 19.05 11.09 45.57 2.34
2911 3661 2.753849 GGCCGCCATGCTTGGTTA 60.754 61.111 19.05 0.00 45.57 2.85
2912 3662 4.992740 TGGCCGCCATGCTTGGTT 62.993 61.111 19.05 0.00 45.57 3.67
2913 3663 4.992740 TTGGCCGCCATGCTTGGT 62.993 61.111 14.30 0.00 45.57 3.67
2914 3664 4.440127 GTTGGCCGCCATGCTTGG 62.440 66.667 14.30 14.22 46.66 3.61
2915 3665 4.440127 GGTTGGCCGCCATGCTTG 62.440 66.667 14.30 0.00 31.53 4.01
2924 3674 2.044806 CTATCTCTGGGGGTTGGCCG 62.045 65.000 0.00 0.00 34.97 6.13
2925 3675 0.694444 TCTATCTCTGGGGGTTGGCC 60.694 60.000 0.00 0.00 0.00 5.36
2926 3676 0.761802 CTCTATCTCTGGGGGTTGGC 59.238 60.000 0.00 0.00 0.00 4.52
2927 3677 0.761802 GCTCTATCTCTGGGGGTTGG 59.238 60.000 0.00 0.00 0.00 3.77
2928 3678 0.390860 CGCTCTATCTCTGGGGGTTG 59.609 60.000 0.00 0.00 0.00 3.77
2929 3679 0.032017 ACGCTCTATCTCTGGGGGTT 60.032 55.000 0.00 0.00 0.00 4.11
2930 3680 0.757188 CACGCTCTATCTCTGGGGGT 60.757 60.000 0.00 0.00 0.00 4.95
2931 3681 2.045280 CACGCTCTATCTCTGGGGG 58.955 63.158 0.00 0.00 0.00 5.40
2932 3682 1.112315 AGCACGCTCTATCTCTGGGG 61.112 60.000 0.00 0.00 0.00 4.96
2933 3683 0.749649 AAGCACGCTCTATCTCTGGG 59.250 55.000 0.00 0.00 0.00 4.45
2934 3684 2.200067 CAAAGCACGCTCTATCTCTGG 58.800 52.381 0.00 0.00 0.00 3.86
2935 3685 1.592081 GCAAAGCACGCTCTATCTCTG 59.408 52.381 0.00 0.00 0.00 3.35
2936 3686 1.480137 AGCAAAGCACGCTCTATCTCT 59.520 47.619 0.00 0.00 33.35 3.10
2937 3687 1.933247 AGCAAAGCACGCTCTATCTC 58.067 50.000 0.00 0.00 33.35 2.75
2938 3688 2.428890 ACTAGCAAAGCACGCTCTATCT 59.571 45.455 0.00 0.00 40.96 1.98
2939 3689 2.815478 ACTAGCAAAGCACGCTCTATC 58.185 47.619 0.00 0.00 40.96 2.08
2940 3690 2.969628 ACTAGCAAAGCACGCTCTAT 57.030 45.000 0.00 0.00 40.96 1.98
2941 3691 2.736721 CAAACTAGCAAAGCACGCTCTA 59.263 45.455 0.00 0.00 40.96 2.43
2942 3692 1.532868 CAAACTAGCAAAGCACGCTCT 59.467 47.619 0.00 0.00 40.96 4.09
2943 3693 1.264288 ACAAACTAGCAAAGCACGCTC 59.736 47.619 0.00 0.00 40.96 5.03
2944 3694 1.002468 CACAAACTAGCAAAGCACGCT 60.002 47.619 0.00 0.12 43.62 5.07
2945 3695 1.002900 TCACAAACTAGCAAAGCACGC 60.003 47.619 0.00 0.00 0.00 5.34
2946 3696 2.908634 CTCACAAACTAGCAAAGCACG 58.091 47.619 0.00 0.00 0.00 5.34
2947 3697 2.605580 GGCTCACAAACTAGCAAAGCAC 60.606 50.000 0.00 0.00 40.61 4.40
2948 3698 1.608590 GGCTCACAAACTAGCAAAGCA 59.391 47.619 0.00 0.00 40.61 3.91
2949 3699 1.882623 AGGCTCACAAACTAGCAAAGC 59.117 47.619 0.00 0.00 40.61 3.51
2950 3700 2.158449 CGAGGCTCACAAACTAGCAAAG 59.842 50.000 15.95 0.00 40.61 2.77
2951 3701 2.143122 CGAGGCTCACAAACTAGCAAA 58.857 47.619 15.95 0.00 40.61 3.68
2952 3702 1.343142 TCGAGGCTCACAAACTAGCAA 59.657 47.619 15.95 0.00 40.61 3.91
2953 3703 0.966179 TCGAGGCTCACAAACTAGCA 59.034 50.000 15.95 0.00 40.61 3.49
2954 3704 2.301577 ATCGAGGCTCACAAACTAGC 57.698 50.000 15.95 0.00 38.03 3.42
2955 3705 4.677378 CGAATATCGAGGCTCACAAACTAG 59.323 45.833 15.95 0.00 43.74 2.57
2956 3706 4.337274 TCGAATATCGAGGCTCACAAACTA 59.663 41.667 15.95 0.00 44.82 2.24
2957 3707 3.130516 TCGAATATCGAGGCTCACAAACT 59.869 43.478 15.95 0.00 44.82 2.66
2958 3708 3.444916 TCGAATATCGAGGCTCACAAAC 58.555 45.455 15.95 0.29 44.82 2.93
2959 3709 3.793797 TCGAATATCGAGGCTCACAAA 57.206 42.857 15.95 0.00 44.82 2.83
2970 3720 6.808704 TCATGAATTTAGGAGCTCGAATATCG 59.191 38.462 7.83 0.00 42.10 2.92
2971 3721 8.539770 TTCATGAATTTAGGAGCTCGAATATC 57.460 34.615 7.83 6.61 0.00 1.63
2973 3723 9.996554 TTATTCATGAATTTAGGAGCTCGAATA 57.003 29.630 25.26 8.20 32.50 1.75
2974 3724 8.908786 TTATTCATGAATTTAGGAGCTCGAAT 57.091 30.769 25.26 9.13 32.50 3.34
2975 3725 8.908786 ATTATTCATGAATTTAGGAGCTCGAA 57.091 30.769 25.26 9.82 32.50 3.71
3006 3756 9.905713 TGCAATATAGACTATCTTTTGAAACCT 57.094 29.630 0.00 0.00 0.00 3.50
3043 3793 2.036475 AGGGAGCTACGATGCAATAGTG 59.964 50.000 0.00 0.00 33.09 2.74
3044 3794 2.320781 AGGGAGCTACGATGCAATAGT 58.679 47.619 0.00 0.00 35.84 2.12
3045 3795 3.393089 AAGGGAGCTACGATGCAATAG 57.607 47.619 0.00 0.00 34.99 1.73
3046 3796 3.118408 ACAAAGGGAGCTACGATGCAATA 60.118 43.478 0.00 0.00 34.99 1.90
3047 3797 2.292267 CAAAGGGAGCTACGATGCAAT 58.708 47.619 0.00 0.00 34.99 3.56
3048 3798 1.003118 ACAAAGGGAGCTACGATGCAA 59.997 47.619 0.00 0.00 34.99 4.08
3049 3799 0.613260 ACAAAGGGAGCTACGATGCA 59.387 50.000 0.00 0.00 34.99 3.96
3050 3800 2.596904 TACAAAGGGAGCTACGATGC 57.403 50.000 0.00 0.00 0.00 3.91
3051 3801 4.322080 TCATACAAAGGGAGCTACGATG 57.678 45.455 0.00 0.00 0.00 3.84
3052 3802 5.300752 CAATCATACAAAGGGAGCTACGAT 58.699 41.667 0.00 0.00 0.00 3.73
3053 3803 4.442893 CCAATCATACAAAGGGAGCTACGA 60.443 45.833 0.00 0.00 0.00 3.43
3054 3804 3.809832 CCAATCATACAAAGGGAGCTACG 59.190 47.826 0.00 0.00 0.00 3.51
3055 3805 4.576463 CACCAATCATACAAAGGGAGCTAC 59.424 45.833 0.00 0.00 0.00 3.58
3056 3806 4.473196 TCACCAATCATACAAAGGGAGCTA 59.527 41.667 0.00 0.00 0.00 3.32
3057 3807 3.266772 TCACCAATCATACAAAGGGAGCT 59.733 43.478 0.00 0.00 0.00 4.09
3058 3808 3.620488 TCACCAATCATACAAAGGGAGC 58.380 45.455 0.00 0.00 0.00 4.70
3059 3809 7.095060 CGATATTCACCAATCATACAAAGGGAG 60.095 40.741 0.00 0.00 0.00 4.30
3060 3810 6.710295 CGATATTCACCAATCATACAAAGGGA 59.290 38.462 0.00 0.00 0.00 4.20
3061 3811 6.486657 ACGATATTCACCAATCATACAAAGGG 59.513 38.462 0.00 0.00 0.00 3.95
3062 3812 7.307989 GGACGATATTCACCAATCATACAAAGG 60.308 40.741 0.00 0.00 0.00 3.11
3063 3813 7.226523 TGGACGATATTCACCAATCATACAAAG 59.773 37.037 0.00 0.00 0.00 2.77
3064 3814 7.011950 GTGGACGATATTCACCAATCATACAAA 59.988 37.037 0.00 0.00 34.11 2.83
3065 3815 6.481976 GTGGACGATATTCACCAATCATACAA 59.518 38.462 0.00 0.00 34.11 2.41
3066 3816 5.989168 GTGGACGATATTCACCAATCATACA 59.011 40.000 0.00 0.00 34.11 2.29
3067 3817 5.118664 CGTGGACGATATTCACCAATCATAC 59.881 44.000 0.00 0.00 43.02 2.39
3068 3818 5.227152 CGTGGACGATATTCACCAATCATA 58.773 41.667 0.00 0.00 43.02 2.15
3069 3819 4.058124 CGTGGACGATATTCACCAATCAT 58.942 43.478 0.00 0.00 43.02 2.45
3070 3820 3.453424 CGTGGACGATATTCACCAATCA 58.547 45.455 0.00 0.00 43.02 2.57
3071 3821 2.800544 CCGTGGACGATATTCACCAATC 59.199 50.000 0.00 0.00 43.02 2.67
3072 3822 2.833794 CCGTGGACGATATTCACCAAT 58.166 47.619 0.00 0.00 43.02 3.16
3073 3823 1.741055 GCCGTGGACGATATTCACCAA 60.741 52.381 0.00 0.00 43.02 3.67
3074 3824 0.179094 GCCGTGGACGATATTCACCA 60.179 55.000 0.00 0.00 43.02 4.17
3075 3825 0.878961 GGCCGTGGACGATATTCACC 60.879 60.000 0.00 0.00 43.02 4.02
3076 3826 0.179094 TGGCCGTGGACGATATTCAC 60.179 55.000 0.00 0.00 43.02 3.18
3077 3827 0.179094 GTGGCCGTGGACGATATTCA 60.179 55.000 0.00 0.00 43.02 2.57
3078 3828 0.878961 GGTGGCCGTGGACGATATTC 60.879 60.000 0.00 0.00 43.02 1.75
3079 3829 1.145377 GGTGGCCGTGGACGATATT 59.855 57.895 0.00 0.00 43.02 1.28
3080 3830 1.335132 AAGGTGGCCGTGGACGATAT 61.335 55.000 0.00 0.00 43.02 1.63
3081 3831 1.985662 AAGGTGGCCGTGGACGATA 60.986 57.895 0.00 0.00 43.02 2.92
3082 3832 3.319198 AAGGTGGCCGTGGACGAT 61.319 61.111 0.00 0.00 43.02 3.73
3083 3833 4.308458 CAAGGTGGCCGTGGACGA 62.308 66.667 0.00 0.00 43.02 4.20
3085 3835 4.947147 TGCAAGGTGGCCGTGGAC 62.947 66.667 0.00 0.00 33.72 4.02
3086 3836 3.505790 ATTGCAAGGTGGCCGTGGA 62.506 57.895 4.94 0.00 33.72 4.02
3087 3837 2.990967 ATTGCAAGGTGGCCGTGG 60.991 61.111 4.94 0.00 33.72 4.94
3088 3838 2.203972 CTGATTGCAAGGTGGCCGTG 62.204 60.000 4.94 0.00 36.14 4.94
3089 3839 1.973281 CTGATTGCAAGGTGGCCGT 60.973 57.895 4.94 0.00 0.00 5.68
3090 3840 1.033746 ATCTGATTGCAAGGTGGCCG 61.034 55.000 4.94 0.00 0.00 6.13
3091 3841 0.458669 CATCTGATTGCAAGGTGGCC 59.541 55.000 4.94 0.00 0.00 5.36
3092 3842 0.179119 GCATCTGATTGCAAGGTGGC 60.179 55.000 4.94 0.00 42.31 5.01
3100 3850 2.617250 TTCACGTTGCATCTGATTGC 57.383 45.000 0.00 5.49 43.07 3.56
3101 3851 3.376234 AGGATTCACGTTGCATCTGATTG 59.624 43.478 0.00 0.00 0.00 2.67
3102 3852 3.614092 AGGATTCACGTTGCATCTGATT 58.386 40.909 0.00 0.00 0.00 2.57
3103 3853 3.272574 AGGATTCACGTTGCATCTGAT 57.727 42.857 0.00 0.00 0.00 2.90
3104 3854 2.768253 AGGATTCACGTTGCATCTGA 57.232 45.000 0.00 0.00 0.00 3.27
3105 3855 3.395858 GAAGGATTCACGTTGCATCTG 57.604 47.619 0.00 0.00 46.62 2.90
3118 3868 4.487714 TGATCTTTACGCCAGAAGGATT 57.512 40.909 0.00 0.00 36.89 3.01
3119 3869 4.503991 GGATGATCTTTACGCCAGAAGGAT 60.504 45.833 0.00 0.00 36.89 3.24
3120 3870 3.181465 GGATGATCTTTACGCCAGAAGGA 60.181 47.826 0.00 0.00 36.89 3.36
3121 3871 3.134458 GGATGATCTTTACGCCAGAAGG 58.866 50.000 0.00 0.00 38.23 3.46
3122 3872 2.797156 CGGATGATCTTTACGCCAGAAG 59.203 50.000 0.00 0.00 0.00 2.85
3123 3873 2.821546 CGGATGATCTTTACGCCAGAA 58.178 47.619 0.00 0.00 0.00 3.02
3124 3874 1.538204 GCGGATGATCTTTACGCCAGA 60.538 52.381 13.01 0.00 44.01 3.86
3125 3875 0.861837 GCGGATGATCTTTACGCCAG 59.138 55.000 13.01 0.00 44.01 4.85
3126 3876 2.986311 GCGGATGATCTTTACGCCA 58.014 52.632 13.01 0.00 44.01 5.69
3129 3879 1.071239 CGCTTGCGGATGATCTTTACG 60.071 52.381 7.16 0.00 0.00 3.18
3130 3880 1.333258 GCGCTTGCGGATGATCTTTAC 60.333 52.381 16.79 0.00 0.00 2.01
3131 3881 0.937304 GCGCTTGCGGATGATCTTTA 59.063 50.000 16.79 0.00 0.00 1.85
3132 3882 1.718757 GGCGCTTGCGGATGATCTTT 61.719 55.000 16.79 0.00 40.46 2.52
3133 3883 2.182842 GGCGCTTGCGGATGATCTT 61.183 57.895 16.79 0.00 40.46 2.40
3134 3884 2.590007 GGCGCTTGCGGATGATCT 60.590 61.111 16.79 0.00 40.46 2.75
3135 3885 2.890109 CTGGCGCTTGCGGATGATC 61.890 63.158 16.79 0.00 40.46 2.92
3136 3886 2.898840 CTGGCGCTTGCGGATGAT 60.899 61.111 16.79 0.00 40.46 2.45
3148 3898 3.801997 ATCAGGGAAGGCCTGGCG 61.802 66.667 5.69 0.00 36.11 5.69
3149 3899 2.123982 CATCAGGGAAGGCCTGGC 60.124 66.667 5.69 11.05 36.11 4.85
3150 3900 2.599597 CCATCAGGGAAGGCCTGG 59.400 66.667 5.69 0.00 40.01 4.45
3151 3901 2.123982 GCCATCAGGGAAGGCCTG 60.124 66.667 5.69 0.00 40.10 4.85
3152 3902 3.801997 CGCCATCAGGGAAGGCCT 61.802 66.667 0.00 0.00 42.61 5.19
3153 3903 3.764160 CTCGCCATCAGGGAAGGCC 62.764 68.421 6.88 0.00 42.61 5.19
3154 3904 2.203126 CTCGCCATCAGGGAAGGC 60.203 66.667 2.53 2.53 42.21 4.35
3155 3905 1.153289 CACTCGCCATCAGGGAAGG 60.153 63.158 0.00 0.00 40.01 3.46
3156 3906 0.460987 GACACTCGCCATCAGGGAAG 60.461 60.000 0.00 0.00 40.01 3.46
3157 3907 0.904865 AGACACTCGCCATCAGGGAA 60.905 55.000 0.00 0.00 40.01 3.97
3158 3908 1.305297 AGACACTCGCCATCAGGGA 60.305 57.895 0.00 0.00 40.01 4.20
3159 3909 1.142748 GAGACACTCGCCATCAGGG 59.857 63.158 0.00 0.00 40.85 4.45
3160 3910 1.142748 GGAGACACTCGCCATCAGG 59.857 63.158 0.00 0.00 36.28 3.86
3161 3911 0.247460 TTGGAGACACTCGCCATCAG 59.753 55.000 0.00 0.00 45.62 2.90
3162 3912 0.247460 CTTGGAGACACTCGCCATCA 59.753 55.000 0.00 0.00 45.62 3.07
3163 3913 0.532573 TCTTGGAGACACTCGCCATC 59.467 55.000 0.00 0.00 45.62 3.51
3164 3914 1.134580 CATCTTGGAGACACTCGCCAT 60.135 52.381 0.00 0.00 45.62 4.40
3165 3915 0.247460 CATCTTGGAGACACTCGCCA 59.753 55.000 0.00 0.00 44.66 5.69
3166 3916 1.086634 GCATCTTGGAGACACTCGCC 61.087 60.000 0.00 0.00 42.67 5.54
3167 3917 1.086634 GGCATCTTGGAGACACTCGC 61.087 60.000 0.00 0.00 42.67 5.03
3168 3918 0.803768 CGGCATCTTGGAGACACTCG 60.804 60.000 0.00 0.00 42.67 4.18
3169 3919 0.460987 CCGGCATCTTGGAGACACTC 60.461 60.000 0.00 0.00 42.67 3.51
3170 3920 1.599047 CCGGCATCTTGGAGACACT 59.401 57.895 0.00 0.00 42.67 3.55
3171 3921 1.450312 CCCGGCATCTTGGAGACAC 60.450 63.158 0.00 0.00 42.67 3.67
3172 3922 2.669133 CCCCGGCATCTTGGAGACA 61.669 63.158 0.00 0.00 39.83 3.41
3173 3923 2.190578 CCCCGGCATCTTGGAGAC 59.809 66.667 0.00 0.00 0.00 3.36
3174 3924 2.285368 ACCCCGGCATCTTGGAGA 60.285 61.111 0.00 0.00 0.00 3.71
3175 3925 2.190578 GACCCCGGCATCTTGGAG 59.809 66.667 0.00 0.00 0.00 3.86
3176 3926 2.285368 AGACCCCGGCATCTTGGA 60.285 61.111 0.00 0.00 0.00 3.53
3177 3927 2.124570 CAGACCCCGGCATCTTGG 60.125 66.667 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.