Multiple sequence alignment - TraesCS3B01G164100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G164100 chr3B 100.000 3898 0 0 1 3898 161645388 161641491 0.000000e+00 7199.0
1 TraesCS3B01G164100 chr3D 95.765 2574 64 18 551 3100 110405449 110402897 0.000000e+00 4108.0
2 TraesCS3B01G164100 chr3D 95.652 391 17 0 3098 3488 110402662 110402272 2.560000e-176 628.0
3 TraesCS3B01G164100 chr3D 84.434 424 52 9 19 430 588864574 588864153 4.690000e-109 405.0
4 TraesCS3B01G164100 chr3D 87.681 276 24 5 3623 3898 110401210 110400945 2.920000e-81 313.0
5 TraesCS3B01G164100 chr3D 79.181 293 55 5 3513 3801 27934546 27934256 8.540000e-47 198.0
6 TraesCS3B01G164100 chr3D 92.308 130 8 2 3507 3635 110402216 110402088 2.390000e-42 183.0
7 TraesCS3B01G164100 chr3A 93.939 2673 114 30 571 3206 119686393 119689054 0.000000e+00 3995.0
8 TraesCS3B01G164100 chr3A 82.812 448 52 14 1 430 101527558 101527118 1.020000e-100 377.0
9 TraesCS3B01G164100 chr3A 89.691 97 8 2 3793 3889 119689083 119689177 5.290000e-24 122.0
10 TraesCS3B01G164100 chr5D 88.143 447 35 5 1 430 382293695 382294140 2.080000e-142 516.0
11 TraesCS3B01G164100 chr2D 85.777 457 35 12 3 430 47252815 47253270 1.280000e-124 457.0
12 TraesCS3B01G164100 chr2D 87.500 360 33 3 82 430 47399783 47400141 4.690000e-109 405.0
13 TraesCS3B01G164100 chr2D 78.339 277 52 6 3208 3479 536987701 536987974 5.180000e-39 172.0
14 TraesCS3B01G164100 chr2A 84.967 459 38 6 1 430 752290369 752290825 1.660000e-118 436.0
15 TraesCS3B01G164100 chr2A 84.783 460 38 12 1 430 495941431 495941888 2.150000e-117 433.0
16 TraesCS3B01G164100 chr2A 84.571 175 20 4 3216 3389 541395912 541395744 2.410000e-37 167.0
17 TraesCS3B01G164100 chr6D 84.599 461 40 6 1 433 141141122 141140665 2.780000e-116 429.0
18 TraesCS3B01G164100 chr6D 80.863 371 60 9 1 367 319292037 319292400 8.250000e-72 281.0
19 TraesCS3B01G164100 chr2B 84.396 455 40 12 1 430 435477995 435478443 6.020000e-113 418.0
20 TraesCS3B01G164100 chr2B 81.633 441 65 10 7 433 705052979 705052541 6.200000e-93 351.0
21 TraesCS3B01G164100 chr5A 84.116 447 41 10 13 430 534454100 534454545 4.690000e-109 405.0
22 TraesCS3B01G164100 chr7D 84.524 420 49 11 23 430 99194344 99194759 6.070000e-108 401.0
23 TraesCS3B01G164100 chr4B 83.447 441 60 7 1 430 20752558 20752996 7.850000e-107 398.0
24 TraesCS3B01G164100 chr6A 83.759 431 52 11 13 430 220769778 220770203 3.650000e-105 392.0
25 TraesCS3B01G164100 chr1D 82.540 441 62 9 1 430 62438267 62438703 1.320000e-99 374.0
26 TraesCS3B01G164100 chr5B 90.943 265 22 2 167 430 340094296 340094559 4.790000e-94 355.0
27 TraesCS3B01G164100 chr4D 80.846 449 66 14 1 431 159613416 159612970 6.240000e-88 335.0
28 TraesCS3B01G164100 chr6B 100.000 29 0 0 458 486 626210328 626210300 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G164100 chr3B 161641491 161645388 3897 True 7199.0 7199 100.0000 1 3898 1 chr3B.!!$R1 3897
1 TraesCS3B01G164100 chr3D 110400945 110405449 4504 True 1308.0 4108 92.8515 551 3898 4 chr3D.!!$R3 3347
2 TraesCS3B01G164100 chr3A 119686393 119689177 2784 False 2058.5 3995 91.8150 571 3889 2 chr3A.!!$F1 3318

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.028505 CGATGGTCGTATTCGTCCGT 59.971 55.0 2.62 2.62 45.35 4.69 F
193 194 0.035439 TTGGTCCAATTCCTCGCTCC 60.035 55.0 0.00 0.00 0.00 4.70 F
1764 1810 0.032217 AGAAGCAGAGGGAGAGGGAG 60.032 60.0 0.00 0.00 0.00 4.30 F
1765 1811 0.032615 GAAGCAGAGGGAGAGGGAGA 60.033 60.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 1750 1.033746 GTGGGGCAGATGATGGTGTG 61.034 60.0 0.0 0.0 0.00 3.82 R
2156 2202 1.112113 GTCGGACTCATCCTGCCTTA 58.888 55.0 0.0 0.0 43.73 2.69 R
2876 2924 0.179032 ACGATTTGGGTGACTGTGCA 60.179 50.0 0.0 0.0 0.00 4.57 R
3611 3940 0.244450 TTATTGCTTGCTGCCACTGC 59.756 50.0 0.0 0.0 42.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.531206 GACGAACTCAATCTCCTTCGG 58.469 52.381 0.00 0.00 39.83 4.30
21 22 1.281899 CGAACTCAATCTCCTTCGGC 58.718 55.000 0.00 0.00 33.46 5.54
22 23 1.134965 CGAACTCAATCTCCTTCGGCT 60.135 52.381 0.00 0.00 33.46 5.52
23 24 2.545731 GAACTCAATCTCCTTCGGCTC 58.454 52.381 0.00 0.00 0.00 4.70
24 25 0.827368 ACTCAATCTCCTTCGGCTCC 59.173 55.000 0.00 0.00 0.00 4.70
25 26 1.118838 CTCAATCTCCTTCGGCTCCT 58.881 55.000 0.00 0.00 0.00 3.69
26 27 1.068434 CTCAATCTCCTTCGGCTCCTC 59.932 57.143 0.00 0.00 0.00 3.71
27 28 0.105778 CAATCTCCTTCGGCTCCTCC 59.894 60.000 0.00 0.00 0.00 4.30
36 37 3.462678 GGCTCCTCCGACCACTCC 61.463 72.222 0.00 0.00 0.00 3.85
37 38 3.462678 GCTCCTCCGACCACTCCC 61.463 72.222 0.00 0.00 0.00 4.30
38 39 2.360980 CTCCTCCGACCACTCCCT 59.639 66.667 0.00 0.00 0.00 4.20
39 40 1.755008 CTCCTCCGACCACTCCCTC 60.755 68.421 0.00 0.00 0.00 4.30
40 41 2.218115 CTCCTCCGACCACTCCCTCT 62.218 65.000 0.00 0.00 0.00 3.69
41 42 1.305381 CCTCCGACCACTCCCTCTT 60.305 63.158 0.00 0.00 0.00 2.85
42 43 1.324005 CCTCCGACCACTCCCTCTTC 61.324 65.000 0.00 0.00 0.00 2.87
43 44 0.612174 CTCCGACCACTCCCTCTTCA 60.612 60.000 0.00 0.00 0.00 3.02
44 45 0.898789 TCCGACCACTCCCTCTTCAC 60.899 60.000 0.00 0.00 0.00 3.18
45 46 1.213013 CGACCACTCCCTCTTCACG 59.787 63.158 0.00 0.00 0.00 4.35
46 47 1.592223 GACCACTCCCTCTTCACGG 59.408 63.158 0.00 0.00 0.00 4.94
47 48 1.889530 GACCACTCCCTCTTCACGGG 61.890 65.000 0.00 0.00 43.38 5.28
48 49 2.660064 CCACTCCCTCTTCACGGGG 61.660 68.421 0.00 0.00 42.23 5.73
51 52 3.187313 TCCCTCTTCACGGGGAGA 58.813 61.111 0.00 0.00 45.84 3.71
52 53 1.467886 TCCCTCTTCACGGGGAGAA 59.532 57.895 0.00 0.00 45.84 2.87
53 54 0.614979 TCCCTCTTCACGGGGAGAAG 60.615 60.000 0.00 0.00 45.84 2.85
54 55 1.617947 CCCTCTTCACGGGGAGAAGG 61.618 65.000 0.00 0.00 45.18 3.46
55 56 1.219393 CTCTTCACGGGGAGAAGGC 59.781 63.158 0.00 0.00 42.09 4.35
56 57 2.245438 CTCTTCACGGGGAGAAGGCC 62.245 65.000 0.00 0.00 42.09 5.19
72 73 4.148825 CCCACGCCGGAAGAGGAG 62.149 72.222 5.05 0.00 36.56 3.69
73 74 4.148825 CCACGCCGGAAGAGGAGG 62.149 72.222 5.05 0.00 36.56 4.30
74 75 3.068691 CACGCCGGAAGAGGAGGA 61.069 66.667 5.05 0.00 35.27 3.71
75 76 2.756283 ACGCCGGAAGAGGAGGAG 60.756 66.667 5.05 0.00 35.27 3.69
76 77 4.214327 CGCCGGAAGAGGAGGAGC 62.214 72.222 5.05 0.00 0.00 4.70
77 78 2.762043 GCCGGAAGAGGAGGAGCT 60.762 66.667 5.05 0.00 0.00 4.09
78 79 2.791868 GCCGGAAGAGGAGGAGCTC 61.792 68.421 5.05 4.71 0.00 4.09
88 89 2.443016 AGGAGCTCCTGGCGTAGG 60.443 66.667 34.74 1.87 46.55 3.18
97 98 3.855630 CTGGCGTAGGAAGATCTCG 57.144 57.895 0.00 0.00 0.00 4.04
98 99 0.318275 CTGGCGTAGGAAGATCTCGC 60.318 60.000 15.27 15.27 44.95 5.03
99 100 0.752009 TGGCGTAGGAAGATCTCGCT 60.752 55.000 20.76 0.00 45.01 4.93
100 101 0.318275 GGCGTAGGAAGATCTCGCTG 60.318 60.000 20.76 1.52 45.01 5.18
101 102 0.937231 GCGTAGGAAGATCTCGCTGC 60.937 60.000 16.07 4.17 42.88 5.25
102 103 0.382158 CGTAGGAAGATCTCGCTGCA 59.618 55.000 0.00 0.00 0.00 4.41
103 104 1.599171 CGTAGGAAGATCTCGCTGCAG 60.599 57.143 10.11 10.11 0.00 4.41
104 105 1.678627 GTAGGAAGATCTCGCTGCAGA 59.321 52.381 20.43 0.00 0.00 4.26
105 106 0.746063 AGGAAGATCTCGCTGCAGAG 59.254 55.000 20.43 15.90 39.52 3.35
106 107 0.249405 GGAAGATCTCGCTGCAGAGG 60.249 60.000 20.43 8.53 38.71 3.69
107 108 0.743688 GAAGATCTCGCTGCAGAGGA 59.256 55.000 20.43 14.15 38.71 3.71
108 109 0.459489 AAGATCTCGCTGCAGAGGAC 59.541 55.000 20.43 6.92 38.71 3.85
109 110 1.299014 GATCTCGCTGCAGAGGACG 60.299 63.158 20.43 11.76 38.71 4.79
110 111 1.719725 GATCTCGCTGCAGAGGACGA 61.720 60.000 20.43 15.69 38.71 4.20
111 112 1.999071 ATCTCGCTGCAGAGGACGAC 61.999 60.000 20.43 0.00 38.71 4.34
112 113 4.103103 TCGCTGCAGAGGACGACG 62.103 66.667 20.43 9.73 0.00 5.12
113 114 4.406173 CGCTGCAGAGGACGACGT 62.406 66.667 20.43 0.00 0.00 4.34
114 115 2.875485 GCTGCAGAGGACGACGTA 59.125 61.111 20.43 0.00 0.00 3.57
115 116 1.211969 GCTGCAGAGGACGACGTAA 59.788 57.895 20.43 0.00 0.00 3.18
117 118 0.179161 CTGCAGAGGACGACGTAAGG 60.179 60.000 8.42 0.00 46.39 2.69
134 135 4.501714 GCCGTGCCGATGGTCGTA 62.502 66.667 0.00 0.00 38.40 3.43
135 136 2.415843 CCGTGCCGATGGTCGTAT 59.584 61.111 0.00 0.00 38.40 3.06
136 137 1.227147 CCGTGCCGATGGTCGTATT 60.227 57.895 0.00 0.00 38.40 1.89
137 138 1.213094 CCGTGCCGATGGTCGTATTC 61.213 60.000 0.00 0.00 38.40 1.75
138 139 1.537289 CGTGCCGATGGTCGTATTCG 61.537 60.000 0.00 0.00 38.40 3.34
139 140 0.526954 GTGCCGATGGTCGTATTCGT 60.527 55.000 0.00 0.00 38.40 3.85
140 141 0.248743 TGCCGATGGTCGTATTCGTC 60.249 55.000 0.00 0.00 38.40 4.20
141 142 0.938168 GCCGATGGTCGTATTCGTCC 60.938 60.000 1.24 1.24 43.41 4.79
142 143 0.659417 CCGATGGTCGTATTCGTCCG 60.659 60.000 3.86 0.00 45.35 4.79
143 144 0.028505 CGATGGTCGTATTCGTCCGT 59.971 55.000 2.62 2.62 45.35 4.69
144 145 1.751552 GATGGTCGTATTCGTCCGTC 58.248 55.000 12.74 12.74 46.87 4.79
145 146 1.386533 ATGGTCGTATTCGTCCGTCT 58.613 50.000 3.86 0.00 45.35 4.18
146 147 0.729116 TGGTCGTATTCGTCCGTCTC 59.271 55.000 3.86 0.00 45.35 3.36
147 148 0.729116 GGTCGTATTCGTCCGTCTCA 59.271 55.000 0.00 0.00 35.87 3.27
148 149 1.530646 GGTCGTATTCGTCCGTCTCAC 60.531 57.143 0.00 0.00 35.87 3.51
149 150 0.371301 TCGTATTCGTCCGTCTCACG 59.629 55.000 0.00 0.00 38.65 4.35
159 160 2.504244 GTCTCACGGACGCGGAAG 60.504 66.667 12.47 2.82 35.07 3.46
189 190 3.642938 TGGTTGGTCCAATTCCTCG 57.357 52.632 7.77 0.00 44.12 4.63
190 191 0.608035 TGGTTGGTCCAATTCCTCGC 60.608 55.000 7.77 0.00 44.12 5.03
191 192 0.322546 GGTTGGTCCAATTCCTCGCT 60.323 55.000 7.77 0.00 35.97 4.93
192 193 1.087501 GTTGGTCCAATTCCTCGCTC 58.912 55.000 7.77 0.00 0.00 5.03
193 194 0.035439 TTGGTCCAATTCCTCGCTCC 60.035 55.000 0.00 0.00 0.00 4.70
194 195 1.521681 GGTCCAATTCCTCGCTCCG 60.522 63.158 0.00 0.00 0.00 4.63
195 196 1.218316 GTCCAATTCCTCGCTCCGT 59.782 57.895 0.00 0.00 0.00 4.69
196 197 1.084370 GTCCAATTCCTCGCTCCGTG 61.084 60.000 0.00 0.00 0.00 4.94
197 198 2.464459 CCAATTCCTCGCTCCGTGC 61.464 63.158 0.00 0.00 38.57 5.34
198 199 1.448540 CAATTCCTCGCTCCGTGCT 60.449 57.895 0.00 0.00 40.11 4.40
199 200 1.021390 CAATTCCTCGCTCCGTGCTT 61.021 55.000 0.00 0.00 40.11 3.91
200 201 0.741221 AATTCCTCGCTCCGTGCTTC 60.741 55.000 0.00 0.00 40.11 3.86
201 202 2.579684 ATTCCTCGCTCCGTGCTTCC 62.580 60.000 0.00 0.00 40.11 3.46
202 203 3.764466 CCTCGCTCCGTGCTTCCT 61.764 66.667 0.00 0.00 40.11 3.36
203 204 2.202676 CTCGCTCCGTGCTTCCTC 60.203 66.667 0.00 0.00 40.11 3.71
204 205 4.116328 TCGCTCCGTGCTTCCTCG 62.116 66.667 0.00 0.00 40.11 4.63
285 286 4.500116 GAGCCACGTCCGGAGCTC 62.500 72.222 22.97 22.97 44.36 4.09
288 289 4.436998 CCACGTCCGGAGCTCCAC 62.437 72.222 31.67 21.61 35.14 4.02
289 290 3.680786 CACGTCCGGAGCTCCACA 61.681 66.667 31.67 14.98 35.14 4.17
290 291 2.680352 ACGTCCGGAGCTCCACAT 60.680 61.111 31.67 9.90 35.14 3.21
291 292 2.202797 CGTCCGGAGCTCCACATG 60.203 66.667 31.67 18.21 35.14 3.21
292 293 2.982130 GTCCGGAGCTCCACATGT 59.018 61.111 31.67 0.00 35.14 3.21
293 294 1.448540 GTCCGGAGCTCCACATGTG 60.449 63.158 31.67 19.31 35.14 3.21
332 333 4.821589 CGGAAGGGGCTCGCAGAC 62.822 72.222 0.00 0.00 0.00 3.51
333 334 4.821589 GGAAGGGGCTCGCAGACG 62.822 72.222 0.00 0.00 42.01 4.18
334 335 4.821589 GAAGGGGCTCGCAGACGG 62.822 72.222 0.00 0.00 40.63 4.79
344 345 3.876300 GCAGACGGCGAGAAATGT 58.124 55.556 16.62 0.00 0.00 2.71
345 346 1.421485 GCAGACGGCGAGAAATGTG 59.579 57.895 16.62 0.00 0.00 3.21
346 347 1.014044 GCAGACGGCGAGAAATGTGA 61.014 55.000 16.62 0.00 0.00 3.58
347 348 0.994995 CAGACGGCGAGAAATGTGAG 59.005 55.000 16.62 0.00 0.00 3.51
348 349 0.108615 AGACGGCGAGAAATGTGAGG 60.109 55.000 16.62 0.00 0.00 3.86
349 350 0.108804 GACGGCGAGAAATGTGAGGA 60.109 55.000 16.62 0.00 0.00 3.71
350 351 0.108615 ACGGCGAGAAATGTGAGGAG 60.109 55.000 16.62 0.00 0.00 3.69
351 352 0.807667 CGGCGAGAAATGTGAGGAGG 60.808 60.000 0.00 0.00 0.00 4.30
352 353 0.462759 GGCGAGAAATGTGAGGAGGG 60.463 60.000 0.00 0.00 0.00 4.30
353 354 0.462759 GCGAGAAATGTGAGGAGGGG 60.463 60.000 0.00 0.00 0.00 4.79
354 355 1.195115 CGAGAAATGTGAGGAGGGGA 58.805 55.000 0.00 0.00 0.00 4.81
355 356 1.137872 CGAGAAATGTGAGGAGGGGAG 59.862 57.143 0.00 0.00 0.00 4.30
356 357 2.192263 GAGAAATGTGAGGAGGGGAGT 58.808 52.381 0.00 0.00 0.00 3.85
357 358 1.912043 AGAAATGTGAGGAGGGGAGTG 59.088 52.381 0.00 0.00 0.00 3.51
358 359 0.995024 AAATGTGAGGAGGGGAGTGG 59.005 55.000 0.00 0.00 0.00 4.00
359 360 0.916358 AATGTGAGGAGGGGAGTGGG 60.916 60.000 0.00 0.00 0.00 4.61
360 361 1.826384 ATGTGAGGAGGGGAGTGGGA 61.826 60.000 0.00 0.00 0.00 4.37
361 362 1.229529 GTGAGGAGGGGAGTGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
362 363 0.840722 GTGAGGAGGGGAGTGGGAAA 60.841 60.000 0.00 0.00 0.00 3.13
363 364 0.121197 TGAGGAGGGGAGTGGGAAAT 59.879 55.000 0.00 0.00 0.00 2.17
364 365 1.299939 GAGGAGGGGAGTGGGAAATT 58.700 55.000 0.00 0.00 0.00 1.82
365 366 1.002857 AGGAGGGGAGTGGGAAATTG 58.997 55.000 0.00 0.00 0.00 2.32
366 367 0.684479 GGAGGGGAGTGGGAAATTGC 60.684 60.000 0.00 0.00 0.00 3.56
367 368 1.000896 AGGGGAGTGGGAAATTGCG 60.001 57.895 0.00 0.00 0.00 4.85
368 369 2.052104 GGGGAGTGGGAAATTGCGG 61.052 63.158 0.00 0.00 0.00 5.69
369 370 1.001393 GGGAGTGGGAAATTGCGGA 60.001 57.895 0.00 0.00 0.00 5.54
370 371 1.032114 GGGAGTGGGAAATTGCGGAG 61.032 60.000 0.00 0.00 0.00 4.63
395 396 3.547513 GCGGCGAGGGATAGGGTT 61.548 66.667 12.98 0.00 0.00 4.11
396 397 3.103091 GCGGCGAGGGATAGGGTTT 62.103 63.158 12.98 0.00 0.00 3.27
397 398 1.069258 CGGCGAGGGATAGGGTTTC 59.931 63.158 0.00 0.00 0.00 2.78
398 399 1.069258 GGCGAGGGATAGGGTTTCG 59.931 63.158 0.00 0.00 0.00 3.46
399 400 1.397390 GGCGAGGGATAGGGTTTCGA 61.397 60.000 0.00 0.00 33.38 3.71
400 401 0.249363 GCGAGGGATAGGGTTTCGAC 60.249 60.000 0.00 0.00 33.38 4.20
401 402 0.388294 CGAGGGATAGGGTTTCGACC 59.612 60.000 0.00 0.00 33.38 4.79
408 409 2.640989 GGGTTTCGACCCGCAAAC 59.359 61.111 0.00 0.00 40.59 2.93
409 410 2.250190 GGTTTCGACCCGCAAACG 59.750 61.111 0.00 0.00 33.94 3.60
410 411 2.426261 GTTTCGACCCGCAAACGC 60.426 61.111 0.00 0.00 38.22 4.84
411 412 2.895865 TTTCGACCCGCAAACGCA 60.896 55.556 0.00 0.00 38.22 5.24
412 413 2.255172 TTTCGACCCGCAAACGCAT 61.255 52.632 0.00 0.00 38.22 4.73
413 414 2.177654 TTTCGACCCGCAAACGCATC 62.178 55.000 0.00 0.00 38.22 3.91
414 415 4.499023 CGACCCGCAAACGCATCG 62.499 66.667 0.00 0.00 38.29 3.84
415 416 4.811761 GACCCGCAAACGCATCGC 62.812 66.667 0.00 0.00 38.22 4.58
426 427 2.103538 GCATCGCGAACCCGTAGA 59.896 61.111 15.24 0.00 38.24 2.59
427 428 1.299926 GCATCGCGAACCCGTAGAT 60.300 57.895 15.24 0.00 38.24 1.98
428 429 0.039798 GCATCGCGAACCCGTAGATA 60.040 55.000 15.24 0.00 35.07 1.98
429 430 1.402456 GCATCGCGAACCCGTAGATAT 60.402 52.381 15.24 0.00 35.07 1.63
430 431 2.251040 CATCGCGAACCCGTAGATATG 58.749 52.381 15.24 0.00 35.07 1.78
431 432 0.039798 TCGCGAACCCGTAGATATGC 60.040 55.000 6.20 0.00 38.24 3.14
432 433 0.039437 CGCGAACCCGTAGATATGCT 60.039 55.000 0.00 0.00 38.24 3.79
433 434 1.699343 GCGAACCCGTAGATATGCTC 58.301 55.000 0.00 0.00 38.24 4.26
434 435 1.269998 GCGAACCCGTAGATATGCTCT 59.730 52.381 0.00 0.00 38.24 4.09
435 436 2.486982 GCGAACCCGTAGATATGCTCTA 59.513 50.000 0.00 0.00 38.24 2.43
436 437 3.057736 GCGAACCCGTAGATATGCTCTAA 60.058 47.826 0.00 0.00 38.20 2.10
437 438 4.724303 CGAACCCGTAGATATGCTCTAAG 58.276 47.826 0.00 0.00 38.20 2.18
438 439 4.454847 CGAACCCGTAGATATGCTCTAAGA 59.545 45.833 0.00 0.00 37.95 2.10
439 440 5.391097 CGAACCCGTAGATATGCTCTAAGAG 60.391 48.000 0.00 0.00 37.95 2.85
440 441 4.337145 ACCCGTAGATATGCTCTAAGAGG 58.663 47.826 0.00 0.53 37.95 3.69
441 442 4.202588 ACCCGTAGATATGCTCTAAGAGGT 60.203 45.833 0.00 1.01 37.95 3.85
442 443 4.396790 CCCGTAGATATGCTCTAAGAGGTC 59.603 50.000 0.00 0.00 37.95 3.85
443 444 5.250200 CCGTAGATATGCTCTAAGAGGTCT 58.750 45.833 0.00 0.00 37.95 3.85
444 445 5.123186 CCGTAGATATGCTCTAAGAGGTCTG 59.877 48.000 0.00 0.00 37.95 3.51
445 446 5.391523 CGTAGATATGCTCTAAGAGGTCTGC 60.392 48.000 0.00 0.00 37.95 4.26
446 447 4.739793 AGATATGCTCTAAGAGGTCTGCT 58.260 43.478 0.00 0.00 30.26 4.24
447 448 5.886609 AGATATGCTCTAAGAGGTCTGCTA 58.113 41.667 0.00 0.00 30.26 3.49
448 449 5.945784 AGATATGCTCTAAGAGGTCTGCTAG 59.054 44.000 0.00 0.00 30.26 3.42
449 450 3.653835 TGCTCTAAGAGGTCTGCTAGA 57.346 47.619 0.00 0.00 0.00 2.43
450 451 3.550820 TGCTCTAAGAGGTCTGCTAGAG 58.449 50.000 9.87 9.87 36.88 2.43
451 452 3.053991 TGCTCTAAGAGGTCTGCTAGAGT 60.054 47.826 13.61 0.00 36.50 3.24
452 453 3.951680 GCTCTAAGAGGTCTGCTAGAGTT 59.048 47.826 13.61 0.00 36.50 3.01
453 454 4.202010 GCTCTAAGAGGTCTGCTAGAGTTG 60.202 50.000 13.61 0.00 36.50 3.16
454 455 3.697045 TCTAAGAGGTCTGCTAGAGTTGC 59.303 47.826 0.00 0.00 0.00 4.17
455 456 2.230130 AGAGGTCTGCTAGAGTTGCT 57.770 50.000 0.00 0.00 0.00 3.91
456 457 2.099405 AGAGGTCTGCTAGAGTTGCTC 58.901 52.381 0.00 0.00 0.00 4.26
457 458 2.099405 GAGGTCTGCTAGAGTTGCTCT 58.901 52.381 4.02 4.02 43.83 4.09
458 459 3.053991 AGAGGTCTGCTAGAGTTGCTCTA 60.054 47.826 0.00 5.84 41.50 2.43
459 460 3.697045 GAGGTCTGCTAGAGTTGCTCTAA 59.303 47.826 7.22 0.00 41.74 2.10
460 461 3.699038 AGGTCTGCTAGAGTTGCTCTAAG 59.301 47.826 7.22 3.73 41.74 2.18
461 462 3.697045 GGTCTGCTAGAGTTGCTCTAAGA 59.303 47.826 7.22 5.68 41.74 2.10
462 463 4.202010 GGTCTGCTAGAGTTGCTCTAAGAG 60.202 50.000 7.22 6.20 41.74 2.85
463 464 3.951037 TCTGCTAGAGTTGCTCTAAGAGG 59.049 47.826 7.22 0.00 41.74 3.69
464 465 3.699038 CTGCTAGAGTTGCTCTAAGAGGT 59.301 47.826 7.22 0.00 41.74 3.85
465 466 3.697045 TGCTAGAGTTGCTCTAAGAGGTC 59.303 47.826 7.22 0.00 41.74 3.85
466 467 3.951680 GCTAGAGTTGCTCTAAGAGGTCT 59.048 47.826 7.22 0.00 41.74 3.85
467 468 4.202010 GCTAGAGTTGCTCTAAGAGGTCTG 60.202 50.000 7.22 0.00 41.74 3.51
468 469 2.495669 AGAGTTGCTCTAAGAGGTCTGC 59.504 50.000 0.00 0.00 39.28 4.26
469 470 2.495669 GAGTTGCTCTAAGAGGTCTGCT 59.504 50.000 0.00 0.00 0.00 4.24
470 471 3.697045 GAGTTGCTCTAAGAGGTCTGCTA 59.303 47.826 0.00 0.00 0.00 3.49
471 472 3.699038 AGTTGCTCTAAGAGGTCTGCTAG 59.301 47.826 0.00 0.00 0.00 3.42
472 473 3.653835 TGCTCTAAGAGGTCTGCTAGA 57.346 47.619 0.00 0.00 0.00 2.43
473 474 3.550820 TGCTCTAAGAGGTCTGCTAGAG 58.449 50.000 9.87 9.87 36.88 2.43
474 475 3.201045 TGCTCTAAGAGGTCTGCTAGAGA 59.799 47.826 15.53 0.00 36.34 3.10
475 476 4.141274 TGCTCTAAGAGGTCTGCTAGAGAT 60.141 45.833 15.53 0.00 36.34 2.75
476 477 4.216257 GCTCTAAGAGGTCTGCTAGAGATG 59.784 50.000 15.53 0.00 36.34 2.90
477 478 4.141287 TCTAAGAGGTCTGCTAGAGATGC 58.859 47.826 0.00 0.00 31.63 3.91
478 479 2.754012 AGAGGTCTGCTAGAGATGCT 57.246 50.000 0.00 0.00 31.63 3.79
479 480 2.586425 AGAGGTCTGCTAGAGATGCTC 58.414 52.381 0.00 0.00 31.63 4.26
480 481 2.175499 AGAGGTCTGCTAGAGATGCTCT 59.825 50.000 0.00 2.22 43.83 4.09
481 482 3.394274 AGAGGTCTGCTAGAGATGCTCTA 59.606 47.826 0.00 4.30 41.50 2.43
482 483 4.141274 AGAGGTCTGCTAGAGATGCTCTAA 60.141 45.833 5.75 0.00 41.74 2.10
483 484 4.739793 AGGTCTGCTAGAGATGCTCTAAT 58.260 43.478 5.75 0.00 41.74 1.73
484 485 5.886609 AGGTCTGCTAGAGATGCTCTAATA 58.113 41.667 5.75 0.00 41.74 0.98
485 486 5.945784 AGGTCTGCTAGAGATGCTCTAATAG 59.054 44.000 5.75 6.87 41.74 1.73
502 503 7.548196 TCTAATAGCTTAACAAAACCGATGG 57.452 36.000 0.00 0.00 0.00 3.51
503 504 4.632538 ATAGCTTAACAAAACCGATGGC 57.367 40.909 0.00 0.00 0.00 4.40
504 505 2.235016 AGCTTAACAAAACCGATGGCA 58.765 42.857 0.00 0.00 0.00 4.92
505 506 2.825532 AGCTTAACAAAACCGATGGCAT 59.174 40.909 0.00 0.00 0.00 4.40
506 507 3.258123 AGCTTAACAAAACCGATGGCATT 59.742 39.130 0.00 0.00 0.00 3.56
507 508 3.993736 GCTTAACAAAACCGATGGCATTT 59.006 39.130 0.00 0.00 0.00 2.32
508 509 4.091365 GCTTAACAAAACCGATGGCATTTC 59.909 41.667 0.00 0.00 0.00 2.17
509 510 3.742433 AACAAAACCGATGGCATTTCA 57.258 38.095 0.00 0.00 0.00 2.69
510 511 3.959535 ACAAAACCGATGGCATTTCAT 57.040 38.095 0.00 0.00 0.00 2.57
511 512 3.848726 ACAAAACCGATGGCATTTCATC 58.151 40.909 0.00 0.00 39.93 2.92
512 513 3.257873 ACAAAACCGATGGCATTTCATCA 59.742 39.130 0.00 0.00 42.58 3.07
513 514 4.081531 ACAAAACCGATGGCATTTCATCAT 60.082 37.500 0.00 0.00 42.58 2.45
514 515 3.720949 AACCGATGGCATTTCATCATG 57.279 42.857 0.00 0.00 42.58 3.07
515 516 2.934887 ACCGATGGCATTTCATCATGA 58.065 42.857 0.00 0.00 42.58 3.07
516 517 3.289836 ACCGATGGCATTTCATCATGAA 58.710 40.909 0.00 0.00 42.58 2.57
527 528 5.678910 TTTCATCATGAAATTTTACGCGC 57.321 34.783 8.85 0.00 41.02 6.86
528 529 4.348198 TCATCATGAAATTTTACGCGCA 57.652 36.364 5.73 0.00 0.00 6.09
529 530 4.727475 TCATCATGAAATTTTACGCGCAA 58.273 34.783 5.73 0.00 0.00 4.85
530 531 5.157067 TCATCATGAAATTTTACGCGCAAA 58.843 33.333 5.73 2.03 0.00 3.68
531 532 4.877270 TCATGAAATTTTACGCGCAAAC 57.123 36.364 5.73 0.00 0.00 2.93
532 533 4.290969 TCATGAAATTTTACGCGCAAACA 58.709 34.783 5.73 0.00 0.00 2.83
533 534 4.740205 TCATGAAATTTTACGCGCAAACAA 59.260 33.333 5.73 0.00 0.00 2.83
534 535 5.232202 TCATGAAATTTTACGCGCAAACAAA 59.768 32.000 5.73 0.39 0.00 2.83
535 536 5.450376 TGAAATTTTACGCGCAAACAAAA 57.550 30.435 5.73 8.00 0.00 2.44
536 537 6.037423 TGAAATTTTACGCGCAAACAAAAT 57.963 29.167 5.73 9.98 33.24 1.82
537 538 7.161829 TGAAATTTTACGCGCAAACAAAATA 57.838 28.000 5.73 0.00 31.97 1.40
538 539 7.058005 TGAAATTTTACGCGCAAACAAAATAC 58.942 30.769 5.73 10.61 31.97 1.89
539 540 6.757026 AATTTTACGCGCAAACAAAATACT 57.243 29.167 5.73 0.00 31.97 2.12
540 541 7.854934 AATTTTACGCGCAAACAAAATACTA 57.145 28.000 5.73 0.00 31.97 1.82
541 542 7.854934 ATTTTACGCGCAAACAAAATACTAA 57.145 28.000 5.73 0.00 30.80 2.24
542 543 7.854934 TTTTACGCGCAAACAAAATACTAAT 57.145 28.000 5.73 0.00 0.00 1.73
543 544 7.481768 TTTACGCGCAAACAAAATACTAATC 57.518 32.000 5.73 0.00 0.00 1.75
544 545 5.037015 ACGCGCAAACAAAATACTAATCA 57.963 34.783 5.73 0.00 0.00 2.57
545 546 5.453648 ACGCGCAAACAAAATACTAATCAA 58.546 33.333 5.73 0.00 0.00 2.57
546 547 6.090129 ACGCGCAAACAAAATACTAATCAAT 58.910 32.000 5.73 0.00 0.00 2.57
547 548 7.244898 ACGCGCAAACAAAATACTAATCAATA 58.755 30.769 5.73 0.00 0.00 1.90
548 549 7.913297 ACGCGCAAACAAAATACTAATCAATAT 59.087 29.630 5.73 0.00 0.00 1.28
549 550 8.742188 CGCGCAAACAAAATACTAATCAATATT 58.258 29.630 8.75 0.00 0.00 1.28
603 607 4.024893 GGGTGATTACTTACATGATGCACG 60.025 45.833 0.00 0.00 0.00 5.34
611 615 1.382522 ACATGATGCACGAATGGTCC 58.617 50.000 0.00 0.00 0.00 4.46
622 626 4.082463 GCACGAATGGTCCCATTTTTCTTA 60.082 41.667 12.62 0.00 45.50 2.10
677 681 1.645034 ATCTCGTTTCATCCACTGCG 58.355 50.000 0.00 0.00 0.00 5.18
702 706 3.119566 ACACGCCAAAAACGAGGTAAAAA 60.120 39.130 0.00 0.00 0.00 1.94
733 764 0.036732 TTAACAGCACTCCAGCCAGG 59.963 55.000 0.00 0.00 39.47 4.45
746 777 2.622452 CCAGCCAGGAATGGAGTTTCAT 60.622 50.000 5.34 0.00 41.22 2.57
747 778 2.686915 CAGCCAGGAATGGAGTTTCATC 59.313 50.000 0.00 0.00 0.00 2.92
748 779 2.027385 GCCAGGAATGGAGTTTCATCC 58.973 52.381 0.00 0.00 40.03 3.51
838 870 1.306141 CCTCCCTCCCACAGTAGCA 60.306 63.158 0.00 0.00 0.00 3.49
839 871 1.333636 CCTCCCTCCCACAGTAGCAG 61.334 65.000 0.00 0.00 0.00 4.24
840 872 1.306141 TCCCTCCCACAGTAGCAGG 60.306 63.158 0.00 0.00 0.00 4.85
841 873 1.306141 CCCTCCCACAGTAGCAGGA 60.306 63.158 0.00 0.00 0.00 3.86
842 874 1.333636 CCCTCCCACAGTAGCAGGAG 61.334 65.000 0.00 0.00 44.65 3.69
1323 1357 0.846693 AGCACAAGTCCAAGAAGGGT 59.153 50.000 0.00 0.00 38.24 4.34
1716 1750 3.349006 CTGTCACCGCAGCCACAC 61.349 66.667 0.00 0.00 0.00 3.82
1763 1809 0.325110 CAGAAGCAGAGGGAGAGGGA 60.325 60.000 0.00 0.00 0.00 4.20
1764 1810 0.032217 AGAAGCAGAGGGAGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
1765 1811 0.032615 GAAGCAGAGGGAGAGGGAGA 60.033 60.000 0.00 0.00 0.00 3.71
1766 1812 0.032217 AAGCAGAGGGAGAGGGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
1767 1813 0.923729 AGCAGAGGGAGAGGGAGAGA 60.924 60.000 0.00 0.00 0.00 3.10
1768 1814 0.468029 GCAGAGGGAGAGGGAGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
1769 1815 1.221635 CAGAGGGAGAGGGAGAGAGA 58.778 60.000 0.00 0.00 0.00 3.10
1770 1816 1.143684 CAGAGGGAGAGGGAGAGAGAG 59.856 61.905 0.00 0.00 0.00 3.20
1771 1817 1.010793 AGAGGGAGAGGGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
1772 1818 1.421646 GAGGGAGAGGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
1773 1819 0.478507 GGGAGAGGGAGAGAGAGAGG 59.521 65.000 0.00 0.00 0.00 3.69
1774 1820 0.478507 GGAGAGGGAGAGAGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
1971 2017 2.600729 CCTCCAGGACTTGCCAGCT 61.601 63.158 0.00 0.00 40.02 4.24
2156 2202 1.542187 AAGGCCGAGCTTTCCGTAGT 61.542 55.000 0.00 0.00 0.00 2.73
2320 2366 5.617252 TGCTAAGCAATATGGGTACTTACC 58.383 41.667 0.00 0.00 39.72 2.85
2509 2555 3.064207 TCAGAACAAATGTGTCGGCTAC 58.936 45.455 0.00 0.00 36.80 3.58
2652 2698 6.966751 TCATTTGGAAGATCAGAAAGGAGAT 58.033 36.000 0.00 0.00 0.00 2.75
2779 2827 6.428385 AACTGTGCAAGATTCTATACAAGC 57.572 37.500 0.00 0.00 0.00 4.01
2781 2829 6.176183 ACTGTGCAAGATTCTATACAAGCTT 58.824 36.000 0.00 0.00 32.12 3.74
3030 3081 6.278363 ACAAGCATAATGAGAAAATCCATGC 58.722 36.000 0.00 0.00 37.09 4.06
3066 3117 8.228035 TGCTTAGCTTTTGAACCTTTAGTTTA 57.772 30.769 5.60 0.00 39.40 2.01
3166 3458 3.753294 AGATCAAGCCAGTATAACCGG 57.247 47.619 0.00 0.00 0.00 5.28
3190 3482 7.101700 GGTTGTGTTGTACTAGGCTTAACTAT 58.898 38.462 0.00 0.00 0.00 2.12
3229 3521 2.165319 AAACTACACCGCAAGTCCTC 57.835 50.000 0.00 0.00 0.00 3.71
3240 3532 3.502211 CCGCAAGTCCTCAAACTATTTGT 59.498 43.478 1.50 0.00 41.36 2.83
3324 3616 1.103803 TCACTCGCAGTCCTATCCAC 58.896 55.000 0.00 0.00 0.00 4.02
3365 3657 1.375523 CGGGTGGCAGGTTGACTAC 60.376 63.158 0.00 0.00 0.00 2.73
3373 3665 1.089920 CAGGTTGACTACTGCCATGC 58.910 55.000 0.00 0.00 0.00 4.06
3385 3677 1.226379 GCCATGCGGTGACATTTCG 60.226 57.895 0.00 0.00 33.28 3.46
3399 3691 1.468506 ATTTCGCACAAACCACCCCC 61.469 55.000 0.00 0.00 0.00 5.40
3417 3709 2.242196 CCCCAAAGGCCATCTCTTCTAA 59.758 50.000 5.01 0.00 0.00 2.10
3433 3725 5.535029 TCTTCTAATTTAGTGGCCCTCCTA 58.465 41.667 0.00 0.00 0.00 2.94
3452 3744 4.086457 CCTATTTGCACAAAACCTACCCT 58.914 43.478 0.00 0.00 33.56 4.34
3481 3773 4.885907 CACTAGCCATCAATCTGACCAAAT 59.114 41.667 0.00 0.00 0.00 2.32
3484 3776 4.346730 AGCCATCAATCTGACCAAATCAA 58.653 39.130 0.00 0.00 36.69 2.57
3488 3780 5.404946 CATCAATCTGACCAAATCAACCAC 58.595 41.667 0.00 0.00 36.69 4.16
3489 3781 4.728772 TCAATCTGACCAAATCAACCACT 58.271 39.130 0.00 0.00 36.69 4.00
3490 3782 5.139727 TCAATCTGACCAAATCAACCACTT 58.860 37.500 0.00 0.00 36.69 3.16
3491 3783 5.598005 TCAATCTGACCAAATCAACCACTTT 59.402 36.000 0.00 0.00 36.69 2.66
3492 3784 4.916983 TCTGACCAAATCAACCACTTTG 57.083 40.909 0.00 0.00 36.69 2.77
3500 3792 2.684001 TCAACCACTTTGACACGTCT 57.316 45.000 0.00 0.00 39.45 4.18
3504 3796 5.120399 TCAACCACTTTGACACGTCTATTT 58.880 37.500 0.00 0.00 39.45 1.40
3639 4858 2.490903 CAGCAAGCAATAAACAGGCTCT 59.509 45.455 0.00 0.00 36.76 4.09
3655 4874 1.000993 TCTGGCCTCAGTCCTCCTC 59.999 63.158 3.32 0.00 41.59 3.71
3656 4875 2.039624 TGGCCTCAGTCCTCCTCC 59.960 66.667 3.32 0.00 0.00 4.30
3657 4876 2.366570 GGCCTCAGTCCTCCTCCT 59.633 66.667 0.00 0.00 0.00 3.69
3668 4887 1.383248 CTCCTCCTTCCACCCCGAT 60.383 63.158 0.00 0.00 0.00 4.18
3672 4891 3.781307 CCTTCCACCCCGATGCGA 61.781 66.667 0.00 0.00 0.00 5.10
3683 4902 0.389817 CCGATGCGAAAGTCTGGACA 60.390 55.000 3.51 0.00 0.00 4.02
3685 4904 0.723981 GATGCGAAAGTCTGGACAGC 59.276 55.000 3.51 4.12 0.00 4.40
3687 4906 0.966179 TGCGAAAGTCTGGACAGCTA 59.034 50.000 3.51 0.00 0.00 3.32
3689 4908 1.336887 GCGAAAGTCTGGACAGCTACA 60.337 52.381 3.51 0.00 0.00 2.74
3691 4910 3.182967 CGAAAGTCTGGACAGCTACATC 58.817 50.000 3.51 0.00 0.00 3.06
3742 4961 0.824109 CTGGATGGCGAAGGTAGACA 59.176 55.000 0.00 0.00 0.00 3.41
3782 5001 1.089920 GTGCCGCAAGAGTTCATCAT 58.910 50.000 0.00 0.00 43.02 2.45
3788 5007 3.376234 CCGCAAGAGTTCATCATGTTCAT 59.624 43.478 0.00 0.00 43.02 2.57
3817 5036 2.340337 GGCCATGTGCATCTTTGAAAC 58.660 47.619 0.00 0.00 43.89 2.78
3862 5081 3.273434 TGGTTTGATGTCTGCAGATAGC 58.727 45.455 21.47 20.88 45.96 2.97
3889 5108 7.347222 TGGATGTACTATTTGAGACCACCTATT 59.653 37.037 0.00 0.00 0.00 1.73
3890 5109 7.657761 GGATGTACTATTTGAGACCACCTATTG 59.342 40.741 0.00 0.00 0.00 1.90
3891 5110 7.490657 TGTACTATTTGAGACCACCTATTGT 57.509 36.000 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.462678 GGAGTGGTCGGAGGAGCC 61.463 72.222 0.00 0.00 39.95 4.70
20 21 3.462678 GGGAGTGGTCGGAGGAGC 61.463 72.222 0.00 0.00 41.07 4.70
21 22 1.755008 GAGGGAGTGGTCGGAGGAG 60.755 68.421 0.00 0.00 0.00 3.69
22 23 1.801302 AAGAGGGAGTGGTCGGAGGA 61.801 60.000 0.00 0.00 0.00 3.71
23 24 1.305381 AAGAGGGAGTGGTCGGAGG 60.305 63.158 0.00 0.00 0.00 4.30
24 25 0.612174 TGAAGAGGGAGTGGTCGGAG 60.612 60.000 0.00 0.00 0.00 4.63
25 26 0.898789 GTGAAGAGGGAGTGGTCGGA 60.899 60.000 0.00 0.00 0.00 4.55
26 27 1.592223 GTGAAGAGGGAGTGGTCGG 59.408 63.158 0.00 0.00 0.00 4.79
27 28 1.213013 CGTGAAGAGGGAGTGGTCG 59.787 63.158 0.00 0.00 0.00 4.79
28 29 1.592223 CCGTGAAGAGGGAGTGGTC 59.408 63.158 0.00 0.00 0.00 4.02
29 30 3.793060 CCGTGAAGAGGGAGTGGT 58.207 61.111 0.00 0.00 0.00 4.16
36 37 1.901085 CCTTCTCCCCGTGAAGAGG 59.099 63.158 5.21 0.00 42.37 3.69
37 38 1.219393 GCCTTCTCCCCGTGAAGAG 59.781 63.158 5.21 0.00 42.37 2.85
38 39 2.291043 GGCCTTCTCCCCGTGAAGA 61.291 63.158 0.00 0.00 42.37 2.87
39 40 2.269241 GGCCTTCTCCCCGTGAAG 59.731 66.667 0.00 0.00 40.23 3.02
40 41 3.327404 GGGCCTTCTCCCCGTGAA 61.327 66.667 0.84 0.00 40.51 3.18
41 42 4.649705 TGGGCCTTCTCCCCGTGA 62.650 66.667 4.53 0.00 45.95 4.35
42 43 4.410400 GTGGGCCTTCTCCCCGTG 62.410 72.222 4.53 0.00 45.95 4.94
55 56 4.148825 CTCCTCTTCCGGCGTGGG 62.149 72.222 6.01 0.00 38.76 4.61
56 57 4.148825 CCTCCTCTTCCGGCGTGG 62.149 72.222 6.01 0.46 40.09 4.94
57 58 3.068691 TCCTCCTCTTCCGGCGTG 61.069 66.667 6.01 0.00 0.00 5.34
58 59 2.756283 CTCCTCCTCTTCCGGCGT 60.756 66.667 6.01 0.00 0.00 5.68
59 60 4.214327 GCTCCTCCTCTTCCGGCG 62.214 72.222 0.00 0.00 0.00 6.46
60 61 2.762043 AGCTCCTCCTCTTCCGGC 60.762 66.667 0.00 0.00 0.00 6.13
61 62 2.131067 GGAGCTCCTCCTCTTCCGG 61.131 68.421 26.25 0.00 46.41 5.14
62 63 3.532501 GGAGCTCCTCCTCTTCCG 58.467 66.667 26.25 0.00 46.41 4.30
70 71 3.124686 CTACGCCAGGAGCTCCTC 58.875 66.667 33.06 21.00 46.65 3.71
79 80 0.318275 GCGAGATCTTCCTACGCCAG 60.318 60.000 13.21 0.00 42.79 4.85
80 81 1.734137 GCGAGATCTTCCTACGCCA 59.266 57.895 13.21 0.00 42.79 5.69
81 82 4.637873 GCGAGATCTTCCTACGCC 57.362 61.111 13.21 0.00 42.79 5.68
83 84 0.382158 TGCAGCGAGATCTTCCTACG 59.618 55.000 0.00 0.00 0.00 3.51
84 85 1.678627 TCTGCAGCGAGATCTTCCTAC 59.321 52.381 9.47 0.00 0.00 3.18
85 86 1.952990 CTCTGCAGCGAGATCTTCCTA 59.047 52.381 9.47 0.00 32.74 2.94
86 87 0.746063 CTCTGCAGCGAGATCTTCCT 59.254 55.000 9.47 0.00 32.74 3.36
87 88 0.249405 CCTCTGCAGCGAGATCTTCC 60.249 60.000 9.47 0.00 32.74 3.46
88 89 0.743688 TCCTCTGCAGCGAGATCTTC 59.256 55.000 9.47 0.00 32.74 2.87
89 90 0.459489 GTCCTCTGCAGCGAGATCTT 59.541 55.000 9.47 0.00 32.74 2.40
90 91 1.723608 CGTCCTCTGCAGCGAGATCT 61.724 60.000 9.47 0.00 32.74 2.75
91 92 1.299014 CGTCCTCTGCAGCGAGATC 60.299 63.158 9.47 0.00 32.74 2.75
92 93 1.750780 TCGTCCTCTGCAGCGAGAT 60.751 57.895 9.47 0.00 32.74 2.75
93 94 2.359975 TCGTCCTCTGCAGCGAGA 60.360 61.111 9.47 2.16 32.74 4.04
94 95 2.202544 GTCGTCCTCTGCAGCGAG 60.203 66.667 9.47 1.88 33.90 5.03
95 96 4.103103 CGTCGTCCTCTGCAGCGA 62.103 66.667 9.47 9.59 0.00 4.93
96 97 2.523184 TTACGTCGTCCTCTGCAGCG 62.523 60.000 9.47 7.01 0.00 5.18
97 98 0.798771 CTTACGTCGTCCTCTGCAGC 60.799 60.000 9.47 0.00 0.00 5.25
98 99 0.179161 CCTTACGTCGTCCTCTGCAG 60.179 60.000 7.63 7.63 0.00 4.41
99 100 1.880894 CCTTACGTCGTCCTCTGCA 59.119 57.895 0.00 0.00 0.00 4.41
100 101 1.516603 GCCTTACGTCGTCCTCTGC 60.517 63.158 0.00 0.00 0.00 4.26
101 102 1.139095 GGCCTTACGTCGTCCTCTG 59.861 63.158 0.00 0.00 0.00 3.35
102 103 2.404995 CGGCCTTACGTCGTCCTCT 61.405 63.158 0.00 0.00 0.00 3.69
103 104 2.101770 CGGCCTTACGTCGTCCTC 59.898 66.667 0.00 0.00 0.00 3.71
104 105 2.674380 ACGGCCTTACGTCGTCCT 60.674 61.111 0.00 0.00 45.08 3.85
105 106 2.505557 CACGGCCTTACGTCGTCC 60.506 66.667 0.00 0.00 46.75 4.79
106 107 3.177249 GCACGGCCTTACGTCGTC 61.177 66.667 0.00 0.00 46.75 4.20
107 108 4.729856 GGCACGGCCTTACGTCGT 62.730 66.667 2.21 2.21 46.75 4.34
120 121 0.526954 ACGAATACGACCATCGGCAC 60.527 55.000 2.97 0.00 45.59 5.01
121 122 0.248743 GACGAATACGACCATCGGCA 60.249 55.000 2.97 0.00 45.59 5.69
122 123 2.503256 GACGAATACGACCATCGGC 58.497 57.895 2.97 0.00 45.59 5.54
128 129 0.729116 TGAGACGGACGAATACGACC 59.271 55.000 0.00 0.00 46.96 4.79
129 130 1.807738 GTGAGACGGACGAATACGAC 58.192 55.000 0.00 0.00 42.66 4.34
130 131 0.371301 CGTGAGACGGACGAATACGA 59.629 55.000 0.00 0.00 39.21 3.43
131 132 2.837804 CGTGAGACGGACGAATACG 58.162 57.895 0.00 0.41 39.21 3.06
142 143 2.504244 CTTCCGCGTCCGTGAGAC 60.504 66.667 4.92 0.00 42.54 3.36
143 144 4.415332 GCTTCCGCGTCCGTGAGA 62.415 66.667 4.92 0.00 0.00 3.27
144 145 4.421479 AGCTTCCGCGTCCGTGAG 62.421 66.667 4.92 0.00 42.32 3.51
145 146 4.415332 GAGCTTCCGCGTCCGTGA 62.415 66.667 4.92 0.00 42.32 4.35
172 173 0.322546 AGCGAGGAATTGGACCAACC 60.323 55.000 9.67 7.45 39.54 3.77
173 174 1.087501 GAGCGAGGAATTGGACCAAC 58.912 55.000 9.67 0.00 0.00 3.77
174 175 0.035439 GGAGCGAGGAATTGGACCAA 60.035 55.000 9.92 9.92 0.00 3.67
175 176 1.602237 GGAGCGAGGAATTGGACCA 59.398 57.895 0.00 0.00 0.00 4.02
176 177 1.521681 CGGAGCGAGGAATTGGACC 60.522 63.158 0.00 0.00 0.00 4.46
177 178 1.084370 CACGGAGCGAGGAATTGGAC 61.084 60.000 0.00 0.00 0.00 4.02
178 179 1.218047 CACGGAGCGAGGAATTGGA 59.782 57.895 0.00 0.00 0.00 3.53
179 180 2.464459 GCACGGAGCGAGGAATTGG 61.464 63.158 0.00 0.00 0.00 3.16
180 181 3.093278 GCACGGAGCGAGGAATTG 58.907 61.111 0.00 0.00 0.00 2.32
268 269 4.500116 GAGCTCCGGACGTGGCTC 62.500 72.222 22.97 22.97 43.07 4.70
271 272 4.436998 GTGGAGCTCCGGACGTGG 62.437 72.222 27.43 0.00 39.43 4.94
272 273 3.006756 ATGTGGAGCTCCGGACGTG 62.007 63.158 27.43 0.00 39.43 4.49
273 274 2.680352 ATGTGGAGCTCCGGACGT 60.680 61.111 27.43 18.89 39.43 4.34
274 275 2.202797 CATGTGGAGCTCCGGACG 60.203 66.667 27.43 12.56 39.43 4.79
275 276 1.448540 CACATGTGGAGCTCCGGAC 60.449 63.158 27.43 20.76 39.43 4.79
276 277 2.981302 CACATGTGGAGCTCCGGA 59.019 61.111 27.43 16.70 39.43 5.14
315 316 4.821589 GTCTGCGAGCCCCTTCCG 62.822 72.222 0.00 0.00 0.00 4.30
316 317 4.821589 CGTCTGCGAGCCCCTTCC 62.822 72.222 0.00 0.00 41.33 3.46
317 318 4.821589 CCGTCTGCGAGCCCCTTC 62.822 72.222 0.00 0.00 41.33 3.46
327 328 1.014044 TCACATTTCTCGCCGTCTGC 61.014 55.000 0.00 0.00 0.00 4.26
328 329 0.994995 CTCACATTTCTCGCCGTCTG 59.005 55.000 0.00 0.00 0.00 3.51
329 330 0.108615 CCTCACATTTCTCGCCGTCT 60.109 55.000 0.00 0.00 0.00 4.18
330 331 0.108804 TCCTCACATTTCTCGCCGTC 60.109 55.000 0.00 0.00 0.00 4.79
331 332 0.108615 CTCCTCACATTTCTCGCCGT 60.109 55.000 0.00 0.00 0.00 5.68
332 333 0.807667 CCTCCTCACATTTCTCGCCG 60.808 60.000 0.00 0.00 0.00 6.46
333 334 0.462759 CCCTCCTCACATTTCTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
334 335 0.462759 CCCCTCCTCACATTTCTCGC 60.463 60.000 0.00 0.00 0.00 5.03
335 336 1.137872 CTCCCCTCCTCACATTTCTCG 59.862 57.143 0.00 0.00 0.00 4.04
336 337 2.093235 CACTCCCCTCCTCACATTTCTC 60.093 54.545 0.00 0.00 0.00 2.87
337 338 1.912043 CACTCCCCTCCTCACATTTCT 59.088 52.381 0.00 0.00 0.00 2.52
338 339 1.065126 CCACTCCCCTCCTCACATTTC 60.065 57.143 0.00 0.00 0.00 2.17
339 340 0.995024 CCACTCCCCTCCTCACATTT 59.005 55.000 0.00 0.00 0.00 2.32
340 341 0.916358 CCCACTCCCCTCCTCACATT 60.916 60.000 0.00 0.00 0.00 2.71
341 342 1.307343 CCCACTCCCCTCCTCACAT 60.307 63.158 0.00 0.00 0.00 3.21
342 343 2.043527 TTCCCACTCCCCTCCTCACA 62.044 60.000 0.00 0.00 0.00 3.58
343 344 0.840722 TTTCCCACTCCCCTCCTCAC 60.841 60.000 0.00 0.00 0.00 3.51
344 345 0.121197 ATTTCCCACTCCCCTCCTCA 59.879 55.000 0.00 0.00 0.00 3.86
345 346 1.064389 CAATTTCCCACTCCCCTCCTC 60.064 57.143 0.00 0.00 0.00 3.71
346 347 1.002857 CAATTTCCCACTCCCCTCCT 58.997 55.000 0.00 0.00 0.00 3.69
347 348 0.684479 GCAATTTCCCACTCCCCTCC 60.684 60.000 0.00 0.00 0.00 4.30
348 349 1.032114 CGCAATTTCCCACTCCCCTC 61.032 60.000 0.00 0.00 0.00 4.30
349 350 1.000896 CGCAATTTCCCACTCCCCT 60.001 57.895 0.00 0.00 0.00 4.79
350 351 2.052104 CCGCAATTTCCCACTCCCC 61.052 63.158 0.00 0.00 0.00 4.81
351 352 1.001393 TCCGCAATTTCCCACTCCC 60.001 57.895 0.00 0.00 0.00 4.30
352 353 1.657751 GCTCCGCAATTTCCCACTCC 61.658 60.000 0.00 0.00 0.00 3.85
353 354 0.678048 AGCTCCGCAATTTCCCACTC 60.678 55.000 0.00 0.00 0.00 3.51
354 355 0.678048 GAGCTCCGCAATTTCCCACT 60.678 55.000 0.87 0.00 0.00 4.00
355 356 1.803289 GAGCTCCGCAATTTCCCAC 59.197 57.895 0.87 0.00 0.00 4.61
356 357 1.745115 CGAGCTCCGCAATTTCCCA 60.745 57.895 8.47 0.00 0.00 4.37
357 358 2.472909 CCGAGCTCCGCAATTTCCC 61.473 63.158 8.47 0.00 36.84 3.97
358 359 3.102097 CCGAGCTCCGCAATTTCC 58.898 61.111 8.47 0.00 36.84 3.13
359 360 2.405191 GCCGAGCTCCGCAATTTC 59.595 61.111 20.25 0.00 36.84 2.17
360 361 3.499737 CGCCGAGCTCCGCAATTT 61.500 61.111 23.72 0.00 36.84 1.82
378 379 2.990830 GAAACCCTATCCCTCGCCGC 62.991 65.000 0.00 0.00 0.00 6.53
379 380 1.069258 GAAACCCTATCCCTCGCCG 59.931 63.158 0.00 0.00 0.00 6.46
380 381 1.069258 CGAAACCCTATCCCTCGCC 59.931 63.158 0.00 0.00 0.00 5.54
381 382 0.249363 GTCGAAACCCTATCCCTCGC 60.249 60.000 0.00 0.00 0.00 5.03
382 383 0.388294 GGTCGAAACCCTATCCCTCG 59.612 60.000 0.00 0.00 39.93 4.63
392 393 2.250190 CGTTTGCGGGTCGAAACC 59.750 61.111 0.00 0.00 45.65 3.27
393 394 2.426261 GCGTTTGCGGGTCGAAAC 60.426 61.111 0.00 0.00 38.78 2.78
409 410 0.039798 TATCTACGGGTTCGCGATGC 60.040 55.000 10.88 6.09 40.63 3.91
410 411 2.251040 CATATCTACGGGTTCGCGATG 58.749 52.381 10.88 2.83 40.63 3.84
411 412 1.402456 GCATATCTACGGGTTCGCGAT 60.402 52.381 10.88 0.00 40.63 4.58
412 413 0.039798 GCATATCTACGGGTTCGCGA 60.040 55.000 3.71 3.71 40.63 5.87
413 414 0.039437 AGCATATCTACGGGTTCGCG 60.039 55.000 0.00 0.00 40.63 5.87
414 415 1.269998 AGAGCATATCTACGGGTTCGC 59.730 52.381 0.00 0.00 40.63 4.70
415 416 4.454847 TCTTAGAGCATATCTACGGGTTCG 59.545 45.833 0.00 0.00 40.33 3.95
416 417 5.106078 CCTCTTAGAGCATATCTACGGGTTC 60.106 48.000 3.26 0.00 40.33 3.62
417 418 4.767928 CCTCTTAGAGCATATCTACGGGTT 59.232 45.833 3.26 0.00 40.33 4.11
418 419 4.202588 ACCTCTTAGAGCATATCTACGGGT 60.203 45.833 3.26 0.00 40.33 5.28
419 420 4.337145 ACCTCTTAGAGCATATCTACGGG 58.663 47.826 3.26 0.00 40.33 5.28
420 421 5.123186 CAGACCTCTTAGAGCATATCTACGG 59.877 48.000 3.26 0.00 40.33 4.02
421 422 5.391523 GCAGACCTCTTAGAGCATATCTACG 60.392 48.000 3.26 0.00 40.33 3.51
422 423 5.710099 AGCAGACCTCTTAGAGCATATCTAC 59.290 44.000 3.26 0.00 40.33 2.59
423 424 5.886609 AGCAGACCTCTTAGAGCATATCTA 58.113 41.667 3.26 0.00 39.64 1.98
424 425 4.739793 AGCAGACCTCTTAGAGCATATCT 58.260 43.478 3.26 1.25 42.47 1.98
425 426 5.943416 TCTAGCAGACCTCTTAGAGCATATC 59.057 44.000 3.26 0.00 0.00 1.63
426 427 5.886609 TCTAGCAGACCTCTTAGAGCATAT 58.113 41.667 3.26 0.00 0.00 1.78
427 428 5.163141 ACTCTAGCAGACCTCTTAGAGCATA 60.163 44.000 3.26 0.00 35.68 3.14
428 429 4.144297 CTCTAGCAGACCTCTTAGAGCAT 58.856 47.826 3.26 0.00 0.00 3.79
429 430 3.053991 ACTCTAGCAGACCTCTTAGAGCA 60.054 47.826 3.26 0.00 35.68 4.26
430 431 3.551846 ACTCTAGCAGACCTCTTAGAGC 58.448 50.000 3.26 0.00 35.68 4.09
431 432 4.202010 GCAACTCTAGCAGACCTCTTAGAG 60.202 50.000 1.56 1.56 37.60 2.43
432 433 3.697045 GCAACTCTAGCAGACCTCTTAGA 59.303 47.826 0.00 0.00 0.00 2.10
433 434 3.699038 AGCAACTCTAGCAGACCTCTTAG 59.301 47.826 0.00 0.00 0.00 2.18
434 435 3.697045 GAGCAACTCTAGCAGACCTCTTA 59.303 47.826 0.00 0.00 0.00 2.10
435 436 2.495669 GAGCAACTCTAGCAGACCTCTT 59.504 50.000 0.00 0.00 0.00 2.85
436 437 2.099405 GAGCAACTCTAGCAGACCTCT 58.901 52.381 0.00 0.00 0.00 3.69
437 438 2.099405 AGAGCAACTCTAGCAGACCTC 58.901 52.381 0.00 0.00 39.28 3.85
438 439 2.230130 AGAGCAACTCTAGCAGACCT 57.770 50.000 0.00 0.00 39.28 3.85
439 440 3.697045 TCTTAGAGCAACTCTAGCAGACC 59.303 47.826 4.64 0.00 42.92 3.85
440 441 4.202010 CCTCTTAGAGCAACTCTAGCAGAC 60.202 50.000 3.26 0.00 42.92 3.51
441 442 3.951037 CCTCTTAGAGCAACTCTAGCAGA 59.049 47.826 3.26 5.46 42.92 4.26
442 443 3.699038 ACCTCTTAGAGCAACTCTAGCAG 59.301 47.826 3.26 5.14 42.92 4.24
443 444 3.697045 GACCTCTTAGAGCAACTCTAGCA 59.303 47.826 3.26 0.00 42.92 3.49
444 445 3.951680 AGACCTCTTAGAGCAACTCTAGC 59.048 47.826 3.26 0.00 42.92 3.42
445 446 4.202010 GCAGACCTCTTAGAGCAACTCTAG 60.202 50.000 3.26 0.00 42.92 2.43
446 447 3.697045 GCAGACCTCTTAGAGCAACTCTA 59.303 47.826 3.26 0.16 41.50 2.43
447 448 2.495669 GCAGACCTCTTAGAGCAACTCT 59.504 50.000 3.26 2.23 43.83 3.24
448 449 2.495669 AGCAGACCTCTTAGAGCAACTC 59.504 50.000 3.26 0.00 0.00 3.01
449 450 2.534990 AGCAGACCTCTTAGAGCAACT 58.465 47.619 3.26 0.00 0.00 3.16
450 451 3.697045 TCTAGCAGACCTCTTAGAGCAAC 59.303 47.826 3.26 0.00 0.00 4.17
451 452 3.951037 CTCTAGCAGACCTCTTAGAGCAA 59.049 47.826 3.26 0.00 0.00 3.91
452 453 3.201045 TCTCTAGCAGACCTCTTAGAGCA 59.799 47.826 3.26 0.00 33.17 4.26
453 454 3.815809 TCTCTAGCAGACCTCTTAGAGC 58.184 50.000 3.26 0.00 33.17 4.09
454 455 4.216257 GCATCTCTAGCAGACCTCTTAGAG 59.784 50.000 1.56 1.56 32.26 2.43
455 456 4.141274 AGCATCTCTAGCAGACCTCTTAGA 60.141 45.833 0.00 0.00 32.26 2.10
456 457 4.144297 AGCATCTCTAGCAGACCTCTTAG 58.856 47.826 0.00 0.00 32.26 2.18
457 458 4.141287 GAGCATCTCTAGCAGACCTCTTA 58.859 47.826 0.00 0.00 33.15 2.10
458 459 2.958355 GAGCATCTCTAGCAGACCTCTT 59.042 50.000 0.00 0.00 33.15 2.85
459 460 2.586425 GAGCATCTCTAGCAGACCTCT 58.414 52.381 0.00 3.86 33.15 3.69
477 478 7.630924 CCATCGGTTTTGTTAAGCTATTAGAG 58.369 38.462 0.00 0.00 0.00 2.43
478 479 6.037830 GCCATCGGTTTTGTTAAGCTATTAGA 59.962 38.462 0.00 0.00 0.00 2.10
479 480 6.183360 TGCCATCGGTTTTGTTAAGCTATTAG 60.183 38.462 0.00 0.00 0.00 1.73
480 481 5.648526 TGCCATCGGTTTTGTTAAGCTATTA 59.351 36.000 0.00 0.00 0.00 0.98
481 482 4.461081 TGCCATCGGTTTTGTTAAGCTATT 59.539 37.500 0.00 0.00 0.00 1.73
482 483 4.013728 TGCCATCGGTTTTGTTAAGCTAT 58.986 39.130 0.00 0.00 0.00 2.97
483 484 3.413327 TGCCATCGGTTTTGTTAAGCTA 58.587 40.909 0.00 0.00 0.00 3.32
484 485 2.235016 TGCCATCGGTTTTGTTAAGCT 58.765 42.857 0.00 0.00 0.00 3.74
485 486 2.715737 TGCCATCGGTTTTGTTAAGC 57.284 45.000 0.00 0.00 0.00 3.09
486 487 5.226396 TGAAATGCCATCGGTTTTGTTAAG 58.774 37.500 0.00 0.00 0.00 1.85
487 488 5.201713 TGAAATGCCATCGGTTTTGTTAA 57.798 34.783 0.00 0.00 0.00 2.01
488 489 4.855715 TGAAATGCCATCGGTTTTGTTA 57.144 36.364 0.00 0.00 0.00 2.41
489 490 3.742433 TGAAATGCCATCGGTTTTGTT 57.258 38.095 0.00 0.00 0.00 2.83
490 491 3.257873 TGATGAAATGCCATCGGTTTTGT 59.742 39.130 0.00 0.00 44.37 2.83
491 492 3.847542 TGATGAAATGCCATCGGTTTTG 58.152 40.909 0.00 0.00 44.37 2.44
492 493 4.160065 TCATGATGAAATGCCATCGGTTTT 59.840 37.500 0.00 0.00 44.37 2.43
493 494 3.700539 TCATGATGAAATGCCATCGGTTT 59.299 39.130 0.00 0.00 44.37 3.27
494 495 3.289836 TCATGATGAAATGCCATCGGTT 58.710 40.909 0.00 0.00 44.37 4.44
495 496 2.934887 TCATGATGAAATGCCATCGGT 58.065 42.857 0.00 0.00 44.37 4.69
496 497 3.994204 TTCATGATGAAATGCCATCGG 57.006 42.857 5.21 0.00 44.37 4.18
506 507 4.727475 TGCGCGTAAAATTTCATGATGAA 58.273 34.783 8.43 3.29 34.03 2.57
507 508 4.348198 TGCGCGTAAAATTTCATGATGA 57.652 36.364 8.43 0.00 0.00 2.92
508 509 5.164109 TGTTTGCGCGTAAAATTTCATGATG 60.164 36.000 23.76 0.00 0.00 3.07
509 510 4.920340 TGTTTGCGCGTAAAATTTCATGAT 59.080 33.333 23.76 0.00 0.00 2.45
510 511 4.290969 TGTTTGCGCGTAAAATTTCATGA 58.709 34.783 23.76 0.00 0.00 3.07
511 512 4.621526 TGTTTGCGCGTAAAATTTCATG 57.378 36.364 23.76 0.00 0.00 3.07
512 513 5.643339 TTTGTTTGCGCGTAAAATTTCAT 57.357 30.435 23.76 0.00 0.00 2.57
513 514 5.450376 TTTTGTTTGCGCGTAAAATTTCA 57.550 30.435 23.76 14.43 0.00 2.69
514 515 7.277917 AGTATTTTGTTTGCGCGTAAAATTTC 58.722 30.769 23.76 11.98 35.22 2.17
515 516 7.167831 AGTATTTTGTTTGCGCGTAAAATTT 57.832 28.000 23.76 9.87 35.22 1.82
516 517 6.757026 AGTATTTTGTTTGCGCGTAAAATT 57.243 29.167 23.76 7.99 35.22 1.82
517 518 7.854934 TTAGTATTTTGTTTGCGCGTAAAAT 57.145 28.000 23.76 19.58 36.83 1.82
518 519 7.590322 TGATTAGTATTTTGTTTGCGCGTAAAA 59.410 29.630 23.76 13.94 0.00 1.52
519 520 7.076362 TGATTAGTATTTTGTTTGCGCGTAAA 58.924 30.769 18.59 18.59 0.00 2.01
520 521 6.600350 TGATTAGTATTTTGTTTGCGCGTAA 58.400 32.000 5.23 5.23 0.00 3.18
521 522 6.166911 TGATTAGTATTTTGTTTGCGCGTA 57.833 33.333 8.43 0.00 0.00 4.42
522 523 5.037015 TGATTAGTATTTTGTTTGCGCGT 57.963 34.783 8.43 0.00 0.00 6.01
523 524 5.983790 TTGATTAGTATTTTGTTTGCGCG 57.016 34.783 0.00 0.00 0.00 6.86
589 591 3.002656 GGACCATTCGTGCATCATGTAAG 59.997 47.826 0.00 0.00 31.96 2.34
592 594 1.382522 GGACCATTCGTGCATCATGT 58.617 50.000 0.00 0.00 31.96 3.21
593 595 0.664761 GGGACCATTCGTGCATCATG 59.335 55.000 0.00 0.00 33.68 3.07
603 607 8.066612 TCAGAATAAGAAAAATGGGACCATTC 57.933 34.615 16.35 6.11 44.86 2.67
611 615 8.034804 ACCCGAATTTCAGAATAAGAAAAATGG 58.965 33.333 0.00 0.00 38.36 3.16
622 626 5.996644 TGTATACCACCCGAATTTCAGAAT 58.003 37.500 0.00 0.00 0.00 2.40
733 764 8.782339 ATTTTGATTTGGATGAAACTCCATTC 57.218 30.769 0.00 0.00 44.66 2.67
838 870 4.814041 GGGGGCAGCTCCTCTCCT 62.814 72.222 12.38 0.00 34.93 3.69
840 872 3.791586 GTGGGGGCAGCTCCTCTC 61.792 72.222 12.38 0.00 34.93 3.20
1715 1749 1.304282 GGGGCAGATGATGGTGTGT 59.696 57.895 0.00 0.00 0.00 3.72
1716 1750 1.033746 GTGGGGCAGATGATGGTGTG 61.034 60.000 0.00 0.00 0.00 3.82
1763 1809 5.582953 CATTATCCATCTCCCTCTCTCTCT 58.417 45.833 0.00 0.00 0.00 3.10
1764 1810 4.160252 GCATTATCCATCTCCCTCTCTCTC 59.840 50.000 0.00 0.00 0.00 3.20
1765 1811 4.095946 GCATTATCCATCTCCCTCTCTCT 58.904 47.826 0.00 0.00 0.00 3.10
1766 1812 4.095946 AGCATTATCCATCTCCCTCTCTC 58.904 47.826 0.00 0.00 0.00 3.20
1767 1813 4.144825 AGCATTATCCATCTCCCTCTCT 57.855 45.455 0.00 0.00 0.00 3.10
1768 1814 5.268387 TCTAGCATTATCCATCTCCCTCTC 58.732 45.833 0.00 0.00 0.00 3.20
1769 1815 5.222526 ACTCTAGCATTATCCATCTCCCTCT 60.223 44.000 0.00 0.00 0.00 3.69
1770 1816 5.022787 ACTCTAGCATTATCCATCTCCCTC 58.977 45.833 0.00 0.00 0.00 4.30
1771 1817 5.022227 ACTCTAGCATTATCCATCTCCCT 57.978 43.478 0.00 0.00 0.00 4.20
1772 1818 5.955355 AGTACTCTAGCATTATCCATCTCCC 59.045 44.000 0.00 0.00 0.00 4.30
1773 1819 8.050325 TCTAGTACTCTAGCATTATCCATCTCC 58.950 40.741 0.00 0.00 42.28 3.71
1774 1820 9.109393 CTCTAGTACTCTAGCATTATCCATCTC 57.891 40.741 0.00 0.00 42.28 2.75
1971 2017 5.961272 TGTACAACATTATCGAGCTTCTCA 58.039 37.500 0.00 0.00 0.00 3.27
2156 2202 1.112113 GTCGGACTCATCCTGCCTTA 58.888 55.000 0.00 0.00 43.73 2.69
2652 2698 7.201794 CCAGAACTACTTGATCTACCGACATTA 60.202 40.741 0.00 0.00 0.00 1.90
2876 2924 0.179032 ACGATTTGGGTGACTGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
3030 3081 3.375782 AAGCTAAGCAACTTGCCAAAG 57.624 42.857 10.25 6.68 46.52 2.77
3166 3458 7.816031 TGATAGTTAAGCCTAGTACAACACAAC 59.184 37.037 0.00 0.00 0.00 3.32
3206 3498 3.070590 AGGACTTGCGGTGTAGTTTACTT 59.929 43.478 0.00 0.00 0.00 2.24
3229 3521 5.890334 ACTTGACACACCACAAATAGTTTG 58.110 37.500 1.15 1.15 45.95 2.93
3240 3532 2.120312 TGGGACTAACTTGACACACCA 58.880 47.619 0.00 0.00 0.00 4.17
3373 3665 1.394697 GTTTGTGCGAAATGTCACCG 58.605 50.000 0.00 0.00 32.51 4.94
3385 3677 1.445518 CTTTGGGGGTGGTTTGTGC 59.554 57.895 0.00 0.00 0.00 4.57
3399 3691 7.201767 CCACTAAATTAGAAGAGATGGCCTTTG 60.202 40.741 3.32 0.00 0.00 2.77
3417 3709 3.052944 TGCAAATAGGAGGGCCACTAAAT 60.053 43.478 6.18 0.00 36.29 1.40
3433 3725 3.571590 TCAGGGTAGGTTTTGTGCAAAT 58.428 40.909 0.00 0.00 0.00 2.32
3481 3773 2.684001 AGACGTGTCAAAGTGGTTGA 57.316 45.000 0.00 0.00 44.20 3.18
3484 3776 4.210537 CGAAAATAGACGTGTCAAAGTGGT 59.789 41.667 0.00 0.00 0.00 4.16
3488 3780 3.185594 TGGCGAAAATAGACGTGTCAAAG 59.814 43.478 0.00 0.00 0.00 2.77
3489 3781 3.059461 GTGGCGAAAATAGACGTGTCAAA 60.059 43.478 0.00 0.00 0.00 2.69
3490 3782 2.477375 GTGGCGAAAATAGACGTGTCAA 59.523 45.455 0.00 0.00 0.00 3.18
3491 3783 2.063266 GTGGCGAAAATAGACGTGTCA 58.937 47.619 0.00 0.00 0.00 3.58
3492 3784 2.092211 CAGTGGCGAAAATAGACGTGTC 59.908 50.000 0.00 0.00 0.00 3.67
3493 3785 2.066262 CAGTGGCGAAAATAGACGTGT 58.934 47.619 0.00 0.00 0.00 4.49
3494 3786 1.393539 CCAGTGGCGAAAATAGACGTG 59.606 52.381 0.00 0.00 0.00 4.49
3495 3787 1.001633 ACCAGTGGCGAAAATAGACGT 59.998 47.619 9.78 0.00 0.00 4.34
3497 3789 2.973945 AGACCAGTGGCGAAAATAGAC 58.026 47.619 9.78 0.00 0.00 2.59
3498 3790 3.334691 CAAGACCAGTGGCGAAAATAGA 58.665 45.455 9.78 0.00 0.00 1.98
3499 3791 2.159517 GCAAGACCAGTGGCGAAAATAG 60.160 50.000 9.78 0.00 0.00 1.73
3500 3792 1.810151 GCAAGACCAGTGGCGAAAATA 59.190 47.619 9.78 0.00 0.00 1.40
3504 3796 1.301716 GAGCAAGACCAGTGGCGAA 60.302 57.895 9.78 0.00 0.00 4.70
3586 3915 4.170062 CCGCATGCACTTCTGGCG 62.170 66.667 19.57 0.00 46.61 5.69
3611 3940 0.244450 TTATTGCTTGCTGCCACTGC 59.756 50.000 0.00 0.00 42.00 4.40
3613 3942 1.962807 TGTTTATTGCTTGCTGCCACT 59.037 42.857 0.00 0.00 42.00 4.00
3639 4858 2.039624 GGAGGAGGACTGAGGCCA 59.960 66.667 7.31 0.00 0.00 5.36
3655 4874 2.813226 TTTCGCATCGGGGTGGAAGG 62.813 60.000 0.00 0.00 0.00 3.46
3656 4875 1.369091 CTTTCGCATCGGGGTGGAAG 61.369 60.000 0.00 0.00 0.00 3.46
3657 4876 1.376683 CTTTCGCATCGGGGTGGAA 60.377 57.895 0.00 0.00 0.00 3.53
3668 4887 0.966179 TAGCTGTCCAGACTTTCGCA 59.034 50.000 0.00 0.00 0.00 5.10
3672 4891 2.237392 GGGATGTAGCTGTCCAGACTTT 59.763 50.000 14.24 0.00 36.19 2.66
3683 4902 1.501582 GAGGAAGTGGGGATGTAGCT 58.498 55.000 0.00 0.00 0.00 3.32
3685 4904 1.132500 GGGAGGAAGTGGGGATGTAG 58.868 60.000 0.00 0.00 0.00 2.74
3687 4906 1.619669 GGGGAGGAAGTGGGGATGT 60.620 63.158 0.00 0.00 0.00 3.06
3689 4908 1.308216 CTGGGGAGGAAGTGGGGAT 60.308 63.158 0.00 0.00 0.00 3.85
3691 4910 3.732849 GCTGGGGAGGAAGTGGGG 61.733 72.222 0.00 0.00 0.00 4.96
3726 4945 2.159099 TGACATGTCTACCTTCGCCATC 60.159 50.000 25.55 0.00 0.00 3.51
3742 4961 0.311790 CGCTGCAACCACTTTGACAT 59.688 50.000 0.00 0.00 37.39 3.06
3782 5001 1.669760 GGCCCGAACGTCATGAACA 60.670 57.895 0.00 0.00 0.00 3.18
3788 5007 2.358125 CACATGGCCCGAACGTCA 60.358 61.111 0.00 0.00 0.00 4.35
3817 5036 7.361542 CCATCACATTCTGGTTCTTCTTACTTG 60.362 40.741 0.00 0.00 0.00 3.16
3851 5070 3.570540 AGTACATCCAGCTATCTGCAGA 58.429 45.455 20.79 20.79 45.94 4.26
3862 5081 5.129485 AGGTGGTCTCAAATAGTACATCCAG 59.871 44.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.