Multiple sequence alignment - TraesCS3B01G163800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G163800 chr3B 100.000 4165 0 0 1 4165 161462519 161458355 0.000000e+00 7692.0
1 TraesCS3B01G163800 chr3B 94.807 674 32 3 1 671 249986849 249986176 0.000000e+00 1048.0
2 TraesCS3B01G163800 chr3B 94.799 673 31 4 1 671 498868396 498869066 0.000000e+00 1046.0
3 TraesCS3B01G163800 chr3B 97.191 178 5 0 2891 3068 168684012 168683835 6.770000e-78 302.0
4 TraesCS3B01G163800 chr3B 95.109 184 9 0 2891 3074 236494904 236494721 1.460000e-74 291.0
5 TraesCS3B01G163800 chr3B 91.150 113 2 2 3268 3379 784573074 784572969 3.360000e-31 147.0
6 TraesCS3B01G163800 chr3D 90.076 1985 98 34 970 2889 110311024 110309074 0.000000e+00 2483.0
7 TraesCS3B01G163800 chr3D 93.016 315 20 1 670 984 110313047 110312735 3.790000e-125 459.0
8 TraesCS3B01G163800 chr3D 93.333 180 5 1 3100 3279 110309037 110308865 4.130000e-65 259.0
9 TraesCS3B01G163800 chr3D 86.585 82 11 0 1889 1970 110220779 110220698 1.590000e-14 91.6
10 TraesCS3B01G163800 chr3A 85.797 2063 158 67 930 2889 120175329 120177359 0.000000e+00 2061.0
11 TraesCS3B01G163800 chr3A 84.878 410 38 15 930 1325 120166052 120166451 3.900000e-105 392.0
12 TraesCS3B01G163800 chr3A 97.778 180 4 0 2889 3068 25947581 25947760 1.120000e-80 311.0
13 TraesCS3B01G163800 chr3A 87.279 283 21 4 3095 3377 120177392 120177659 4.040000e-80 309.0
14 TraesCS3B01G163800 chr3A 97.753 178 3 1 2891 3068 735376197 735376021 5.230000e-79 305.0
15 TraesCS3B01G163800 chr3A 84.387 269 19 14 670 924 120165750 120166009 4.160000e-60 243.0
16 TraesCS3B01G163800 chr3A 85.714 140 18 2 766 904 120175135 120175273 3.360000e-31 147.0
17 TraesCS3B01G163800 chr3A 91.011 89 8 0 3379 3467 120177689 120177777 2.030000e-23 121.0
18 TraesCS3B01G163800 chr3A 85.841 113 11 2 670 778 120173667 120173778 9.460000e-22 115.0
19 TraesCS3B01G163800 chr3A 87.342 79 10 0 1889 1967 120267553 120267631 1.590000e-14 91.6
20 TraesCS3B01G163800 chr6B 95.118 676 29 4 1 673 30621960 30622634 0.000000e+00 1062.0
21 TraesCS3B01G163800 chr6B 94.784 671 33 2 1 671 404669869 404669201 0.000000e+00 1044.0
22 TraesCS3B01G163800 chr2B 94.815 675 31 4 1 672 518372534 518373207 0.000000e+00 1050.0
23 TraesCS3B01G163800 chr2B 94.535 677 33 4 1 673 138961886 138962562 0.000000e+00 1042.0
24 TraesCS3B01G163800 chr2B 96.629 178 6 0 2891 3068 64891772 64891595 3.150000e-76 296.0
25 TraesCS3B01G163800 chr2B 86.047 172 21 2 3463 3634 689745574 689745406 9.200000e-42 182.0
26 TraesCS3B01G163800 chr5B 94.807 674 30 5 1 671 456329331 456328660 0.000000e+00 1046.0
27 TraesCS3B01G163800 chr5B 94.675 676 31 4 1 671 466217850 466218525 0.000000e+00 1044.0
28 TraesCS3B01G163800 chr5B 94.667 675 33 3 1 672 615001858 615002532 0.000000e+00 1044.0
29 TraesCS3B01G163800 chr5B 80.000 535 72 23 3493 4010 672635549 672635033 3.060000e-96 363.0
30 TraesCS3B01G163800 chr1D 82.988 676 86 21 3495 4147 454463301 454463970 6.000000e-163 584.0
31 TraesCS3B01G163800 chr1D 80.747 696 84 27 3497 4160 87838976 87838299 8.040000e-137 497.0
32 TraesCS3B01G163800 chr1D 83.616 177 29 0 1066 1242 414775686 414775862 2.580000e-37 167.0
33 TraesCS3B01G163800 chr7B 91.408 419 23 6 3756 4165 556497311 556497725 2.810000e-156 562.0
34 TraesCS3B01G163800 chr7B 90.909 264 21 1 3495 3755 556466959 556467222 6.620000e-93 351.0
35 TraesCS3B01G163800 chr7B 96.629 178 6 0 2891 3068 721399738 721399915 3.150000e-76 296.0
36 TraesCS3B01G163800 chr7B 96.629 178 6 0 2891 3068 739488609 739488786 3.150000e-76 296.0
37 TraesCS3B01G163800 chr7B 76.543 243 43 12 1891 2126 9751264 9751499 2.030000e-23 121.0
38 TraesCS3B01G163800 chr7B 78.750 160 26 7 1087 1242 439416524 439416679 2.650000e-17 100.0
39 TraesCS3B01G163800 chr5A 81.373 408 46 20 3495 3879 374920886 374921286 5.230000e-79 305.0
40 TraesCS3B01G163800 chr5A 97.191 178 5 0 2891 3068 429509261 429509084 6.770000e-78 302.0
41 TraesCS3B01G163800 chr5A 77.941 204 34 7 3940 4135 392797072 392797272 2.630000e-22 117.0
42 TraesCS3B01G163800 chr4B 97.191 178 5 0 2891 3068 666660336 666660159 6.770000e-78 302.0
43 TraesCS3B01G163800 chr1B 85.311 177 26 0 1066 1242 560251490 560251666 2.560000e-42 183.0
44 TraesCS3B01G163800 chr1A 84.746 177 27 0 1066 1242 511500075 511500251 1.190000e-40 178.0
45 TraesCS3B01G163800 chr7D 79.295 227 42 5 1334 1558 65600823 65600600 2.010000e-33 154.0
46 TraesCS3B01G163800 chr7D 88.462 78 9 0 1164 1241 421792993 421792916 1.230000e-15 95.3
47 TraesCS3B01G163800 chrUn 78.319 226 44 5 1335 1558 84039764 84039542 1.560000e-29 141.0
48 TraesCS3B01G163800 chr7A 78.616 159 28 5 1087 1242 511496142 511496297 2.650000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G163800 chr3B 161458355 161462519 4164 True 7692.0 7692 100.000000 1 4165 1 chr3B.!!$R1 4164
1 TraesCS3B01G163800 chr3B 249986176 249986849 673 True 1048.0 1048 94.807000 1 671 1 chr3B.!!$R4 670
2 TraesCS3B01G163800 chr3B 498868396 498869066 670 False 1046.0 1046 94.799000 1 671 1 chr3B.!!$F1 670
3 TraesCS3B01G163800 chr3D 110308865 110313047 4182 True 1067.0 2483 92.141667 670 3279 3 chr3D.!!$R2 2609
4 TraesCS3B01G163800 chr3A 120173667 120177777 4110 False 550.6 2061 87.128400 670 3467 5 chr3A.!!$F4 2797
5 TraesCS3B01G163800 chr3A 120165750 120166451 701 False 317.5 392 84.632500 670 1325 2 chr3A.!!$F3 655
6 TraesCS3B01G163800 chr6B 30621960 30622634 674 False 1062.0 1062 95.118000 1 673 1 chr6B.!!$F1 672
7 TraesCS3B01G163800 chr6B 404669201 404669869 668 True 1044.0 1044 94.784000 1 671 1 chr6B.!!$R1 670
8 TraesCS3B01G163800 chr2B 518372534 518373207 673 False 1050.0 1050 94.815000 1 672 1 chr2B.!!$F2 671
9 TraesCS3B01G163800 chr2B 138961886 138962562 676 False 1042.0 1042 94.535000 1 673 1 chr2B.!!$F1 672
10 TraesCS3B01G163800 chr5B 456328660 456329331 671 True 1046.0 1046 94.807000 1 671 1 chr5B.!!$R1 670
11 TraesCS3B01G163800 chr5B 466217850 466218525 675 False 1044.0 1044 94.675000 1 671 1 chr5B.!!$F1 670
12 TraesCS3B01G163800 chr5B 615001858 615002532 674 False 1044.0 1044 94.667000 1 672 1 chr5B.!!$F2 671
13 TraesCS3B01G163800 chr5B 672635033 672635549 516 True 363.0 363 80.000000 3493 4010 1 chr5B.!!$R2 517
14 TraesCS3B01G163800 chr1D 454463301 454463970 669 False 584.0 584 82.988000 3495 4147 1 chr1D.!!$F2 652
15 TraesCS3B01G163800 chr1D 87838299 87838976 677 True 497.0 497 80.747000 3497 4160 1 chr1D.!!$R1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 2204 1.133598 CTACGTGCACCGACTAATGGA 59.866 52.381 12.15 0.0 40.7 3.41 F
1271 4420 0.882484 TCGATCTGTTTTGCGTGCCA 60.882 50.000 0.00 0.0 0.0 4.92 F
2421 5648 0.170561 ACGTGTGTATCCTGCTCGAC 59.829 55.000 0.00 0.0 0.0 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1750 4946 0.032403 TGTGTGGCACGTAGGTGTAC 59.968 55.0 16.36 15.12 46.13 2.90 R
3022 6294 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.0 0.00 0.00 0.00 3.69 R
3533 6848 0.376852 CCAATAACCACGATGCACCG 59.623 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 150 7.610305 TCTTCAATAGGTGGAAAACATAGGAAC 59.390 37.037 0.00 0.00 0.00 3.62
171 178 7.938140 TTGGATGTTATCAAGGAAAGGTAAG 57.062 36.000 0.00 0.00 0.00 2.34
324 331 7.797121 ATTTATTGGGAGGAAAGTTTGTGAT 57.203 32.000 0.00 0.00 0.00 3.06
334 341 5.036737 GGAAAGTTTGTGATGTGTCTGTTG 58.963 41.667 0.00 0.00 0.00 3.33
513 520 7.845066 AATTTAAGGAAGTTAGATCCGTGAC 57.155 36.000 0.00 0.00 42.03 3.67
523 530 6.803642 AGTTAGATCCGTGACTTGTTATACC 58.196 40.000 0.00 0.00 0.00 2.73
573 580 7.168905 AGAGTGGAGAGAAAAATAAACCGATT 58.831 34.615 0.00 0.00 0.00 3.34
784 2168 2.552743 GCCCCTTTCTAATTATCGCACC 59.447 50.000 0.00 0.00 0.00 5.01
798 2182 4.789095 ATCGCACCGTTGTATTGTATTC 57.211 40.909 0.00 0.00 0.00 1.75
805 2191 4.563976 ACCGTTGTATTGTATTCTACGTGC 59.436 41.667 0.00 0.00 29.98 5.34
818 2204 1.133598 CTACGTGCACCGACTAATGGA 59.866 52.381 12.15 0.00 40.70 3.41
865 2252 2.644555 AAGTCCGCAGTGACGCACTT 62.645 55.000 9.52 9.52 42.59 3.16
878 2265 3.895656 TGACGCACTTAGGAGCCTATAAT 59.104 43.478 0.00 0.00 0.00 1.28
924 2311 1.276421 ACCGGGTCATCTTCAACTCTG 59.724 52.381 6.32 0.00 0.00 3.35
974 2398 2.331451 GCAAACGTTCTTGCCGCT 59.669 55.556 12.90 0.00 44.88 5.52
1024 4173 2.282462 CCAAGGCAGTGGTGTCCC 60.282 66.667 0.00 0.00 33.63 4.46
1244 4393 1.131883 CGTCGACTTCCTCGGTACATT 59.868 52.381 14.70 0.00 43.16 2.71
1248 4397 3.066342 TCGACTTCCTCGGTACATTCATC 59.934 47.826 0.00 0.00 43.16 2.92
1271 4420 0.882484 TCGATCTGTTTTGCGTGCCA 60.882 50.000 0.00 0.00 0.00 4.92
1391 4563 2.815647 GCTTCCGCCGTCCAAGAG 60.816 66.667 0.00 0.00 0.00 2.85
1587 4779 5.745769 CAGCGGTGAGTGTATATATATGCTG 59.254 44.000 9.50 10.64 38.92 4.41
1589 4781 4.735338 CGGTGAGTGTATATATATGCTGCG 59.265 45.833 11.49 0.00 0.00 5.18
1590 4782 5.043903 GGTGAGTGTATATATATGCTGCGG 58.956 45.833 11.49 0.00 0.00 5.69
1612 4804 3.365364 GGCCTTCGACTGAATTTTGTGAG 60.365 47.826 0.00 0.00 32.61 3.51
1640 4836 1.593006 CCTAAATGCGACGTGTCCATC 59.407 52.381 0.00 0.00 0.00 3.51
1772 4968 1.080093 ACCTACGTGCCACACATCG 60.080 57.895 0.00 0.00 33.40 3.84
1810 5018 2.541178 CGGCGTAGAGGTACACATCTTC 60.541 54.545 1.44 0.00 38.11 2.87
1811 5019 2.223758 GGCGTAGAGGTACACATCTTCC 60.224 54.545 1.44 0.00 38.11 3.46
1812 5020 2.426024 GCGTAGAGGTACACATCTTCCA 59.574 50.000 1.44 0.00 38.11 3.53
1813 5021 3.489398 GCGTAGAGGTACACATCTTCCAG 60.489 52.174 1.44 0.00 38.11 3.86
1814 5022 3.945921 CGTAGAGGTACACATCTTCCAGA 59.054 47.826 1.44 0.00 38.11 3.86
1815 5023 4.580995 CGTAGAGGTACACATCTTCCAGAT 59.419 45.833 1.44 0.00 38.11 2.90
1818 5026 7.606839 CGTAGAGGTACACATCTTCCAGATATA 59.393 40.741 1.44 0.00 38.11 0.86
1820 5028 6.722129 AGAGGTACACATCTTCCAGATATACC 59.278 42.308 0.00 10.44 37.26 2.73
1830 5038 7.749377 TCTTCCAGATATACCTCCTGAAAAA 57.251 36.000 0.00 0.00 0.00 1.94
1868 5076 4.040936 AGCTCATCTAGATACCGTCCAT 57.959 45.455 4.54 0.00 0.00 3.41
1874 5082 7.445707 GCTCATCTAGATACCGTCCATATGATA 59.554 40.741 4.54 0.00 0.00 2.15
1875 5083 9.513906 CTCATCTAGATACCGTCCATATGATAT 57.486 37.037 4.54 0.00 0.00 1.63
1876 5084 9.289782 TCATCTAGATACCGTCCATATGATATG 57.710 37.037 4.54 5.46 0.00 1.78
1877 5085 9.289782 CATCTAGATACCGTCCATATGATATGA 57.710 37.037 13.79 0.00 0.00 2.15
1880 5088 7.208225 AGATACCGTCCATATGATATGATCG 57.792 40.000 13.79 15.26 0.00 3.69
1881 5089 6.773200 AGATACCGTCCATATGATATGATCGT 59.227 38.462 13.79 6.79 0.00 3.73
1882 5090 7.937394 AGATACCGTCCATATGATATGATCGTA 59.063 37.037 13.79 8.48 35.41 3.43
1883 5091 6.961360 ACCGTCCATATGATATGATCGTAT 57.039 37.500 13.79 7.17 41.05 3.06
1884 5092 6.971602 ACCGTCCATATGATATGATCGTATC 58.028 40.000 22.92 22.92 38.97 2.24
1885 5093 6.546034 ACCGTCCATATGATATGATCGTATCA 59.454 38.462 30.56 30.56 43.20 2.15
1886 5094 7.068226 ACCGTCCATATGATATGATCGTATCAA 59.932 37.037 31.56 22.95 42.54 2.57
1887 5095 7.379797 CCGTCCATATGATATGATCGTATCAAC 59.620 40.741 31.56 24.55 42.54 3.18
2052 5260 2.107041 CTGTCCCGCTACCACAACCA 62.107 60.000 0.00 0.00 0.00 3.67
2061 5269 0.472044 TACCACAACCAGCTGCTCAA 59.528 50.000 8.66 0.00 0.00 3.02
2077 5285 0.604578 TCAAGCAGGGAATTTGCAGC 59.395 50.000 3.58 0.00 43.92 5.25
2082 5290 0.612732 CAGGGAATTTGCAGCCTCCA 60.613 55.000 10.99 0.00 0.00 3.86
2135 5343 1.254026 CGACTTCTACACCCAGGTCA 58.746 55.000 0.00 0.00 0.00 4.02
2194 5402 3.852203 CGTGCGTGCATGCGATCA 61.852 61.111 25.05 5.44 37.81 2.92
2227 5435 1.831580 GCTTCTCCATGTGCCTCTTT 58.168 50.000 0.00 0.00 0.00 2.52
2241 5449 2.096013 GCCTCTTTCGGTTGATTAGCAC 59.904 50.000 0.00 0.00 0.00 4.40
2263 5471 4.334203 ACATGTGTTTCTCGTGTTAGCAAA 59.666 37.500 0.00 0.00 32.04 3.68
2277 5485 7.010183 TCGTGTTAGCAAACATCTCTAATTAGC 59.990 37.037 7.67 0.00 46.84 3.09
2297 5515 5.458041 AGCAACATCAACAAGTTAAGCAT 57.542 34.783 0.00 0.00 0.00 3.79
2298 5516 5.224888 AGCAACATCAACAAGTTAAGCATG 58.775 37.500 0.00 0.00 0.00 4.06
2363 5587 3.936203 AGGTGTCCGGCTTTGCGA 61.936 61.111 0.00 0.00 0.00 5.10
2413 5640 1.997606 GCCAACTGTACGTGTGTATCC 59.002 52.381 0.00 0.00 32.11 2.59
2414 5641 2.353406 GCCAACTGTACGTGTGTATCCT 60.353 50.000 0.00 0.00 32.11 3.24
2415 5642 3.250744 CCAACTGTACGTGTGTATCCTG 58.749 50.000 0.00 0.00 32.11 3.86
2416 5643 2.649331 ACTGTACGTGTGTATCCTGC 57.351 50.000 0.00 0.00 32.11 4.85
2417 5644 2.168496 ACTGTACGTGTGTATCCTGCT 58.832 47.619 0.00 0.00 32.11 4.24
2419 5646 1.131693 TGTACGTGTGTATCCTGCTCG 59.868 52.381 0.00 0.00 32.11 5.03
2420 5647 1.399440 GTACGTGTGTATCCTGCTCGA 59.601 52.381 0.00 0.00 32.11 4.04
2421 5648 0.170561 ACGTGTGTATCCTGCTCGAC 59.829 55.000 0.00 0.00 0.00 4.20
2624 5888 1.030457 ACGACTAGCCGATAACCCAG 58.970 55.000 5.13 0.00 0.00 4.45
2627 5891 0.464452 ACTAGCCGATAACCCAGCAC 59.536 55.000 0.00 0.00 0.00 4.40
2681 5949 6.817765 TTGGACATTTCTTAACCATCAGAC 57.182 37.500 0.00 0.00 0.00 3.51
2703 5975 4.823989 ACCTACTGCTAATTTCATGCATCC 59.176 41.667 0.00 0.00 36.07 3.51
2704 5976 4.823442 CCTACTGCTAATTTCATGCATCCA 59.177 41.667 0.00 0.00 36.07 3.41
2840 6112 7.081857 AGGGTCCTACAACTACAATAACAAA 57.918 36.000 0.00 0.00 0.00 2.83
2858 6130 2.046892 GCGAGGTGTGGCATGTCT 60.047 61.111 0.00 0.00 0.00 3.41
2888 6160 3.239861 CTGCAAGGACCCTCAGAAC 57.760 57.895 0.00 0.00 0.00 3.01
2889 6161 0.397941 CTGCAAGGACCCTCAGAACA 59.602 55.000 0.00 0.00 0.00 3.18
2890 6162 0.397941 TGCAAGGACCCTCAGAACAG 59.602 55.000 0.00 0.00 0.00 3.16
2891 6163 0.957888 GCAAGGACCCTCAGAACAGC 60.958 60.000 0.00 0.00 0.00 4.40
2892 6164 0.397941 CAAGGACCCTCAGAACAGCA 59.602 55.000 0.00 0.00 0.00 4.41
2893 6165 1.140312 AAGGACCCTCAGAACAGCAA 58.860 50.000 0.00 0.00 0.00 3.91
2894 6166 1.366319 AGGACCCTCAGAACAGCAAT 58.634 50.000 0.00 0.00 0.00 3.56
2895 6167 1.004044 AGGACCCTCAGAACAGCAATG 59.996 52.381 0.00 0.00 0.00 2.82
2896 6168 0.807496 GACCCTCAGAACAGCAATGC 59.193 55.000 0.00 0.00 0.00 3.56
2897 6169 0.403271 ACCCTCAGAACAGCAATGCT 59.597 50.000 0.00 0.00 40.77 3.79
2898 6170 1.630369 ACCCTCAGAACAGCAATGCTA 59.370 47.619 7.70 0.00 36.40 3.49
2899 6171 2.012673 CCCTCAGAACAGCAATGCTAC 58.987 52.381 7.70 2.70 36.40 3.58
2900 6172 2.616256 CCCTCAGAACAGCAATGCTACA 60.616 50.000 7.70 0.00 36.40 2.74
2901 6173 3.276857 CCTCAGAACAGCAATGCTACAT 58.723 45.455 7.70 0.00 36.40 2.29
2902 6174 3.064958 CCTCAGAACAGCAATGCTACATG 59.935 47.826 7.70 5.03 36.40 3.21
2903 6175 3.678289 TCAGAACAGCAATGCTACATGT 58.322 40.909 7.70 2.69 36.40 3.21
2904 6176 4.831107 TCAGAACAGCAATGCTACATGTA 58.169 39.130 7.70 5.25 36.40 2.29
2905 6177 4.631377 TCAGAACAGCAATGCTACATGTAC 59.369 41.667 7.70 0.16 36.40 2.90
2906 6178 4.392754 CAGAACAGCAATGCTACATGTACA 59.607 41.667 7.70 0.00 36.40 2.90
2907 6179 5.003160 AGAACAGCAATGCTACATGTACAA 58.997 37.500 7.70 0.00 36.40 2.41
2908 6180 5.473162 AGAACAGCAATGCTACATGTACAAA 59.527 36.000 7.70 0.00 36.40 2.83
2909 6181 5.046910 ACAGCAATGCTACATGTACAAAC 57.953 39.130 7.70 0.89 36.40 2.93
2910 6182 4.090729 CAGCAATGCTACATGTACAAACG 58.909 43.478 7.70 0.00 36.40 3.60
2911 6183 4.000325 AGCAATGCTACATGTACAAACGA 59.000 39.130 5.69 0.00 36.99 3.85
2912 6184 4.635765 AGCAATGCTACATGTACAAACGAT 59.364 37.500 5.69 0.00 36.99 3.73
2913 6185 5.123820 AGCAATGCTACATGTACAAACGATT 59.876 36.000 5.69 0.00 36.99 3.34
2914 6186 5.799936 GCAATGCTACATGTACAAACGATTT 59.200 36.000 0.08 0.00 0.00 2.17
2915 6187 6.964370 GCAATGCTACATGTACAAACGATTTA 59.036 34.615 0.08 0.00 0.00 1.40
2916 6188 7.044966 GCAATGCTACATGTACAAACGATTTAC 60.045 37.037 0.08 0.00 0.00 2.01
2917 6189 7.603963 ATGCTACATGTACAAACGATTTACA 57.396 32.000 0.08 0.00 0.00 2.41
2918 6190 7.056002 TGCTACATGTACAAACGATTTACAG 57.944 36.000 0.08 0.00 0.00 2.74
2919 6191 6.091577 TGCTACATGTACAAACGATTTACAGG 59.908 38.462 0.08 0.48 34.48 4.00
2920 6192 5.291293 ACATGTACAAACGATTTACAGGC 57.709 39.130 0.00 0.00 32.12 4.85
2921 6193 5.001232 ACATGTACAAACGATTTACAGGCT 58.999 37.500 0.00 0.00 32.12 4.58
2922 6194 5.472137 ACATGTACAAACGATTTACAGGCTT 59.528 36.000 0.00 0.00 32.12 4.35
2923 6195 6.016610 ACATGTACAAACGATTTACAGGCTTT 60.017 34.615 0.00 0.00 32.12 3.51
2924 6196 6.380095 TGTACAAACGATTTACAGGCTTTT 57.620 33.333 0.00 0.00 0.00 2.27
2925 6197 7.493743 TGTACAAACGATTTACAGGCTTTTA 57.506 32.000 0.00 0.00 0.00 1.52
2926 6198 7.354257 TGTACAAACGATTTACAGGCTTTTAC 58.646 34.615 0.00 0.00 0.00 2.01
2927 6199 6.380095 ACAAACGATTTACAGGCTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
2928 6200 6.435428 ACAAACGATTTACAGGCTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
2929 6201 5.622770 AACGATTTACAGGCTTTTACAGG 57.377 39.130 0.00 0.00 0.00 4.00
2930 6202 4.901868 ACGATTTACAGGCTTTTACAGGA 58.098 39.130 0.00 0.00 0.00 3.86
2931 6203 5.497474 ACGATTTACAGGCTTTTACAGGAT 58.503 37.500 0.00 0.00 0.00 3.24
2932 6204 5.354234 ACGATTTACAGGCTTTTACAGGATG 59.646 40.000 0.00 0.00 46.00 3.51
2933 6205 5.220854 CGATTTACAGGCTTTTACAGGATGG 60.221 44.000 0.00 0.00 43.62 3.51
2934 6206 4.650972 TTACAGGCTTTTACAGGATGGT 57.349 40.909 0.00 0.00 43.62 3.55
2935 6207 3.525800 ACAGGCTTTTACAGGATGGTT 57.474 42.857 0.00 0.00 43.62 3.67
2936 6208 4.650972 ACAGGCTTTTACAGGATGGTTA 57.349 40.909 0.00 0.00 43.62 2.85
2937 6209 4.993028 ACAGGCTTTTACAGGATGGTTAA 58.007 39.130 0.00 0.00 43.62 2.01
2938 6210 5.580022 ACAGGCTTTTACAGGATGGTTAAT 58.420 37.500 0.00 0.00 43.62 1.40
2939 6211 5.652452 ACAGGCTTTTACAGGATGGTTAATC 59.348 40.000 0.00 0.00 43.62 1.75
2940 6212 5.888161 CAGGCTTTTACAGGATGGTTAATCT 59.112 40.000 0.00 0.00 43.62 2.40
2941 6213 6.378280 CAGGCTTTTACAGGATGGTTAATCTT 59.622 38.462 0.00 0.00 43.62 2.40
2942 6214 6.378280 AGGCTTTTACAGGATGGTTAATCTTG 59.622 38.462 0.00 0.00 45.55 3.02
2943 6215 6.377146 GGCTTTTACAGGATGGTTAATCTTGA 59.623 38.462 4.67 0.00 43.40 3.02
2944 6216 7.068716 GGCTTTTACAGGATGGTTAATCTTGAT 59.931 37.037 4.67 0.00 43.40 2.57
2945 6217 8.470002 GCTTTTACAGGATGGTTAATCTTGATT 58.530 33.333 4.67 1.35 43.40 2.57
2946 6218 9.793252 CTTTTACAGGATGGTTAATCTTGATTG 57.207 33.333 6.15 0.00 43.40 2.67
2947 6219 7.880160 TTACAGGATGGTTAATCTTGATTGG 57.120 36.000 6.15 0.00 43.40 3.16
2948 6220 5.831103 ACAGGATGGTTAATCTTGATTGGT 58.169 37.500 6.15 0.00 43.40 3.67
2949 6221 5.888161 ACAGGATGGTTAATCTTGATTGGTC 59.112 40.000 6.15 0.00 43.40 4.02
2950 6222 5.887598 CAGGATGGTTAATCTTGATTGGTCA 59.112 40.000 6.15 2.60 43.40 4.02
2951 6223 6.377996 CAGGATGGTTAATCTTGATTGGTCAA 59.622 38.462 6.15 0.00 43.40 3.18
2952 6224 7.069085 CAGGATGGTTAATCTTGATTGGTCAAT 59.931 37.037 6.15 0.00 43.40 2.57
2953 6225 8.281531 AGGATGGTTAATCTTGATTGGTCAATA 58.718 33.333 6.15 0.00 43.08 1.90
2954 6226 8.571336 GGATGGTTAATCTTGATTGGTCAATAG 58.429 37.037 6.15 0.00 43.08 1.73
2955 6227 7.880160 TGGTTAATCTTGATTGGTCAATAGG 57.120 36.000 6.15 0.00 43.08 2.57
2956 6228 7.410174 TGGTTAATCTTGATTGGTCAATAGGT 58.590 34.615 6.15 0.00 43.08 3.08
2957 6229 7.339212 TGGTTAATCTTGATTGGTCAATAGGTG 59.661 37.037 6.15 0.00 43.08 4.00
2958 6230 7.556275 GGTTAATCTTGATTGGTCAATAGGTGA 59.444 37.037 6.15 0.00 43.08 4.02
2959 6231 8.616076 GTTAATCTTGATTGGTCAATAGGTGAG 58.384 37.037 6.15 0.00 43.08 3.51
2963 6235 4.857251 GGTCAATAGGTGAGCGGG 57.143 61.111 0.00 0.00 44.38 6.13
2964 6236 1.146263 GGTCAATAGGTGAGCGGGG 59.854 63.158 0.00 0.00 44.38 5.73
2965 6237 1.523938 GTCAATAGGTGAGCGGGGC 60.524 63.158 0.00 0.00 36.74 5.80
2966 6238 2.588877 CAATAGGTGAGCGGGGCG 60.589 66.667 0.00 0.00 0.00 6.13
2967 6239 3.861797 AATAGGTGAGCGGGGCGG 61.862 66.667 0.00 0.00 0.00 6.13
3007 6279 2.604912 GGGGGAAGAGGTTTGTGATT 57.395 50.000 0.00 0.00 0.00 2.57
3008 6280 2.171003 GGGGGAAGAGGTTTGTGATTG 58.829 52.381 0.00 0.00 0.00 2.67
3009 6281 2.171003 GGGGAAGAGGTTTGTGATTGG 58.829 52.381 0.00 0.00 0.00 3.16
3010 6282 2.490902 GGGGAAGAGGTTTGTGATTGGT 60.491 50.000 0.00 0.00 0.00 3.67
3011 6283 3.230976 GGGAAGAGGTTTGTGATTGGTT 58.769 45.455 0.00 0.00 0.00 3.67
3012 6284 3.005791 GGGAAGAGGTTTGTGATTGGTTG 59.994 47.826 0.00 0.00 0.00 3.77
3013 6285 3.636764 GGAAGAGGTTTGTGATTGGTTGT 59.363 43.478 0.00 0.00 0.00 3.32
3014 6286 4.099419 GGAAGAGGTTTGTGATTGGTTGTT 59.901 41.667 0.00 0.00 0.00 2.83
3015 6287 5.300792 GGAAGAGGTTTGTGATTGGTTGTTA 59.699 40.000 0.00 0.00 0.00 2.41
3016 6288 6.391227 AAGAGGTTTGTGATTGGTTGTTAG 57.609 37.500 0.00 0.00 0.00 2.34
3017 6289 5.690865 AGAGGTTTGTGATTGGTTGTTAGA 58.309 37.500 0.00 0.00 0.00 2.10
3018 6290 6.306987 AGAGGTTTGTGATTGGTTGTTAGAT 58.693 36.000 0.00 0.00 0.00 1.98
3019 6291 6.207417 AGAGGTTTGTGATTGGTTGTTAGATG 59.793 38.462 0.00 0.00 0.00 2.90
3020 6292 5.243730 AGGTTTGTGATTGGTTGTTAGATGG 59.756 40.000 0.00 0.00 0.00 3.51
3021 6293 5.010617 GGTTTGTGATTGGTTGTTAGATGGT 59.989 40.000 0.00 0.00 0.00 3.55
3022 6294 6.207810 GGTTTGTGATTGGTTGTTAGATGGTA 59.792 38.462 0.00 0.00 0.00 3.25
3023 6295 7.305474 GTTTGTGATTGGTTGTTAGATGGTAG 58.695 38.462 0.00 0.00 0.00 3.18
3024 6296 5.496556 TGTGATTGGTTGTTAGATGGTAGG 58.503 41.667 0.00 0.00 0.00 3.18
3025 6297 5.249622 TGTGATTGGTTGTTAGATGGTAGGA 59.750 40.000 0.00 0.00 0.00 2.94
3026 6298 5.817816 GTGATTGGTTGTTAGATGGTAGGAG 59.182 44.000 0.00 0.00 0.00 3.69
3027 6299 3.906720 TGGTTGTTAGATGGTAGGAGC 57.093 47.619 0.00 0.00 0.00 4.70
3028 6300 2.167693 TGGTTGTTAGATGGTAGGAGCG 59.832 50.000 0.00 0.00 0.00 5.03
3029 6301 2.167900 GGTTGTTAGATGGTAGGAGCGT 59.832 50.000 0.00 0.00 0.00 5.07
3030 6302 3.187700 GTTGTTAGATGGTAGGAGCGTG 58.812 50.000 0.00 0.00 0.00 5.34
3031 6303 2.453521 TGTTAGATGGTAGGAGCGTGT 58.546 47.619 0.00 0.00 0.00 4.49
3032 6304 3.623703 TGTTAGATGGTAGGAGCGTGTA 58.376 45.455 0.00 0.00 0.00 2.90
3033 6305 4.018490 TGTTAGATGGTAGGAGCGTGTAA 58.982 43.478 0.00 0.00 0.00 2.41
3034 6306 4.463539 TGTTAGATGGTAGGAGCGTGTAAA 59.536 41.667 0.00 0.00 0.00 2.01
3035 6307 5.047164 TGTTAGATGGTAGGAGCGTGTAAAA 60.047 40.000 0.00 0.00 0.00 1.52
3036 6308 4.124851 AGATGGTAGGAGCGTGTAAAAG 57.875 45.455 0.00 0.00 0.00 2.27
3037 6309 2.088950 TGGTAGGAGCGTGTAAAAGC 57.911 50.000 0.00 0.00 0.00 3.51
3038 6310 0.997196 GGTAGGAGCGTGTAAAAGCG 59.003 55.000 0.00 0.00 38.61 4.68
3039 6311 1.670967 GGTAGGAGCGTGTAAAAGCGT 60.671 52.381 0.00 0.00 38.61 5.07
3040 6312 1.389106 GTAGGAGCGTGTAAAAGCGTG 59.611 52.381 0.00 0.00 38.61 5.34
3041 6313 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
3042 6314 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
3043 6315 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
3044 6316 2.159881 GGAGCGTGTAAAAGCGTGTAAG 60.160 50.000 0.00 0.00 38.61 2.34
3045 6317 2.473984 GAGCGTGTAAAAGCGTGTAAGT 59.526 45.455 0.00 0.00 38.61 2.24
3046 6318 2.473984 AGCGTGTAAAAGCGTGTAAGTC 59.526 45.455 0.00 0.00 38.61 3.01
3047 6319 2.473984 GCGTGTAAAAGCGTGTAAGTCT 59.526 45.455 0.00 0.00 0.00 3.24
3048 6320 3.060070 GCGTGTAAAAGCGTGTAAGTCTT 60.060 43.478 0.00 0.00 0.00 3.01
3049 6321 4.551410 GCGTGTAAAAGCGTGTAAGTCTTT 60.551 41.667 0.00 0.00 0.00 2.52
3050 6322 4.896238 CGTGTAAAAGCGTGTAAGTCTTTG 59.104 41.667 0.00 0.00 31.21 2.77
3051 6323 5.501252 CGTGTAAAAGCGTGTAAGTCTTTGT 60.501 40.000 0.00 0.00 31.21 2.83
3052 6324 6.291743 CGTGTAAAAGCGTGTAAGTCTTTGTA 60.292 38.462 0.00 0.00 31.21 2.41
3053 6325 7.568134 CGTGTAAAAGCGTGTAAGTCTTTGTAT 60.568 37.037 0.00 0.00 31.21 2.29
3054 6326 7.529519 GTGTAAAAGCGTGTAAGTCTTTGTATG 59.470 37.037 0.00 0.00 31.21 2.39
3055 6327 6.613755 AAAAGCGTGTAAGTCTTTGTATGT 57.386 33.333 0.00 0.00 31.21 2.29
3056 6328 5.840940 AAGCGTGTAAGTCTTTGTATGTC 57.159 39.130 0.00 0.00 0.00 3.06
3057 6329 5.135508 AGCGTGTAAGTCTTTGTATGTCT 57.864 39.130 0.00 0.00 0.00 3.41
3058 6330 6.263516 AGCGTGTAAGTCTTTGTATGTCTA 57.736 37.500 0.00 0.00 0.00 2.59
3059 6331 6.323266 AGCGTGTAAGTCTTTGTATGTCTAG 58.677 40.000 0.00 0.00 0.00 2.43
3060 6332 5.004535 GCGTGTAAGTCTTTGTATGTCTAGC 59.995 44.000 0.00 0.00 0.00 3.42
3061 6333 6.090783 CGTGTAAGTCTTTGTATGTCTAGCA 58.909 40.000 0.00 0.00 0.00 3.49
3062 6334 6.752351 CGTGTAAGTCTTTGTATGTCTAGCAT 59.248 38.462 0.00 5.25 41.42 3.79
3063 6335 7.275779 CGTGTAAGTCTTTGTATGTCTAGCATT 59.724 37.037 5.22 0.00 38.94 3.56
3064 6336 8.936864 GTGTAAGTCTTTGTATGTCTAGCATTT 58.063 33.333 5.22 0.00 38.94 2.32
3065 6337 9.502091 TGTAAGTCTTTGTATGTCTAGCATTTT 57.498 29.630 5.22 0.00 38.94 1.82
3068 6340 8.396272 AGTCTTTGTATGTCTAGCATTTTTGT 57.604 30.769 5.22 0.00 38.94 2.83
3069 6341 8.507249 AGTCTTTGTATGTCTAGCATTTTTGTC 58.493 33.333 5.22 0.00 38.94 3.18
3090 6362 4.281182 GTCCTCAGAACTACTTGAACTGGA 59.719 45.833 0.00 0.00 0.00 3.86
3119 6406 0.593263 CCTACCGTTCCATCGCGTAC 60.593 60.000 5.77 0.00 0.00 3.67
3160 6447 1.745115 GTGTGCCCGCTATTCTGCA 60.745 57.895 0.00 0.00 0.00 4.41
3161 6448 1.097547 GTGTGCCCGCTATTCTGCAT 61.098 55.000 0.00 0.00 35.96 3.96
3162 6449 0.394216 TGTGCCCGCTATTCTGCATT 60.394 50.000 0.00 0.00 35.96 3.56
3163 6450 0.029834 GTGCCCGCTATTCTGCATTG 59.970 55.000 0.00 0.00 35.96 2.82
3164 6451 0.107263 TGCCCGCTATTCTGCATTGA 60.107 50.000 0.00 0.00 0.00 2.57
3165 6452 0.590195 GCCCGCTATTCTGCATTGAG 59.410 55.000 0.00 0.00 0.00 3.02
3166 6453 1.233019 CCCGCTATTCTGCATTGAGG 58.767 55.000 0.00 0.00 0.00 3.86
3176 6463 4.701651 TCTGCATTGAGGATTGAGCTAT 57.298 40.909 0.00 0.00 0.00 2.97
3198 6485 2.096268 CGATGGCTACGCATATTGGTTG 60.096 50.000 0.00 0.00 0.00 3.77
3253 6540 1.591703 GGGATGCTGCCGATCGATA 59.408 57.895 18.66 3.74 0.00 2.92
3286 6573 9.736414 CTGATGGAGATGGAAGTTTGATATATT 57.264 33.333 0.00 0.00 0.00 1.28
3294 6581 7.701539 TGGAAGTTTGATATATTTGCACAGT 57.298 32.000 0.00 0.00 0.00 3.55
3295 6582 7.537715 TGGAAGTTTGATATATTTGCACAGTG 58.462 34.615 0.00 0.00 0.00 3.66
3296 6583 6.473455 GGAAGTTTGATATATTTGCACAGTGC 59.527 38.462 19.37 19.37 45.29 4.40
3351 6638 7.743400 CGTTATGATATAACATTCAGCTTGCAG 59.257 37.037 0.34 0.00 0.00 4.41
3367 6654 4.743644 GCTTGCAGCTTCATAATTGGATTC 59.256 41.667 0.00 0.00 38.45 2.52
3369 6656 4.539726 TGCAGCTTCATAATTGGATTCCT 58.460 39.130 3.95 0.00 0.00 3.36
3377 6664 7.397892 TTCATAATTGGATTCCTTTTACGCA 57.602 32.000 3.95 0.00 0.00 5.24
3378 6665 7.581213 TCATAATTGGATTCCTTTTACGCAT 57.419 32.000 3.95 0.00 0.00 4.73
3380 6667 8.474025 TCATAATTGGATTCCTTTTACGCATTT 58.526 29.630 3.95 0.00 0.00 2.32
3381 6668 9.097257 CATAATTGGATTCCTTTTACGCATTTT 57.903 29.630 3.95 0.00 0.00 1.82
3382 6669 6.966435 ATTGGATTCCTTTTACGCATTTTG 57.034 33.333 3.95 0.00 0.00 2.44
3383 6670 5.461032 TGGATTCCTTTTACGCATTTTGT 57.539 34.783 3.95 0.00 0.00 2.83
3395 6710 2.159585 CGCATTTTGTATCGCAACCTCA 60.160 45.455 0.00 0.00 36.72 3.86
3397 6712 3.758300 CATTTTGTATCGCAACCTCACC 58.242 45.455 0.00 0.00 36.72 4.02
3408 6723 2.427095 GCAACCTCACCAAACAGACTTT 59.573 45.455 0.00 0.00 0.00 2.66
3409 6724 3.119137 GCAACCTCACCAAACAGACTTTT 60.119 43.478 0.00 0.00 0.00 2.27
3426 6741 7.147983 ACAGACTTTTGCCACACTTTACAAATA 60.148 33.333 0.00 0.00 32.50 1.40
3467 6782 5.600484 ACCGATAGAAGGTGATGAGAAATCT 59.400 40.000 0.00 0.00 41.10 2.40
3468 6783 6.778069 ACCGATAGAAGGTGATGAGAAATCTA 59.222 38.462 0.00 0.00 41.10 1.98
3469 6784 7.453126 ACCGATAGAAGGTGATGAGAAATCTAT 59.547 37.037 0.00 0.00 41.10 1.98
3470 6785 8.961634 CCGATAGAAGGTGATGAGAAATCTATA 58.038 37.037 0.00 0.00 39.76 1.31
3471 6786 9.781834 CGATAGAAGGTGATGAGAAATCTATAC 57.218 37.037 0.00 0.00 39.76 1.47
3474 6789 8.546083 AGAAGGTGATGAGAAATCTATACAGT 57.454 34.615 0.00 0.00 0.00 3.55
3475 6790 8.986991 AGAAGGTGATGAGAAATCTATACAGTT 58.013 33.333 0.00 0.00 0.00 3.16
3478 6793 9.427821 AGGTGATGAGAAATCTATACAGTTACT 57.572 33.333 0.00 0.00 0.00 2.24
3479 6794 9.685828 GGTGATGAGAAATCTATACAGTTACTC 57.314 37.037 0.00 0.00 0.00 2.59
3533 6848 2.409870 CCAGGATTTGCACGCTCCC 61.410 63.158 5.06 0.00 0.00 4.30
3548 6863 2.233605 CTCCCGGTGCATCGTGGTTA 62.234 60.000 19.62 3.61 0.00 2.85
3551 6866 0.376852 CCGGTGCATCGTGGTTATTG 59.623 55.000 19.62 0.00 0.00 1.90
3573 6888 0.808755 GTCGGTTGTGGGCCTATTTG 59.191 55.000 4.53 0.00 0.00 2.32
3574 6889 0.963355 TCGGTTGTGGGCCTATTTGC 60.963 55.000 4.53 0.00 0.00 3.68
3577 6892 1.544724 GTTGTGGGCCTATTTGCTGA 58.455 50.000 4.53 0.00 0.00 4.26
3634 6949 1.330829 CAGTGCTGAGTCGTAGCGATA 59.669 52.381 0.00 0.00 44.01 2.92
3639 6954 2.287069 GCTGAGTCGTAGCGATACATGT 60.287 50.000 11.90 2.69 38.42 3.21
3683 6998 1.759445 AGTGTGTGTGTCTGCTCTCTT 59.241 47.619 0.00 0.00 0.00 2.85
3687 7007 1.005748 TGTGTCTGCTCTCTTGGCG 60.006 57.895 0.00 0.00 0.00 5.69
3690 7010 1.809209 GTCTGCTCTCTTGGCGCTC 60.809 63.158 7.64 0.00 0.00 5.03
3710 7030 1.679944 CCTCAATGGAGCGTTGATGGT 60.680 52.381 0.00 0.00 38.47 3.55
3760 7088 1.654220 GTGCGCCGCCAATCATATT 59.346 52.632 6.63 0.00 0.00 1.28
3767 7095 2.094545 GCCGCCAATCATATTGATTCCC 60.095 50.000 0.00 0.00 43.03 3.97
3771 7099 4.083110 CGCCAATCATATTGATTCCCTGTC 60.083 45.833 0.00 0.00 43.03 3.51
3810 7140 8.244802 TGTGTTTTTCTTTATCGGTTCTTTGAA 58.755 29.630 0.00 0.00 0.00 2.69
3905 7259 9.691362 ACAAATACATGTCCACTTCATTTAAAC 57.309 29.630 0.00 0.00 0.00 2.01
3908 7262 9.859427 AATACATGTCCACTTCATTTAAACATG 57.141 29.630 0.00 10.17 44.90 3.21
3911 7265 5.527951 TGTCCACTTCATTTAAACATGCAC 58.472 37.500 0.00 0.00 0.00 4.57
3955 7311 7.639162 AGTTCTACTTTTCAGATACACGTTG 57.361 36.000 0.00 0.00 0.00 4.10
4080 7441 4.385825 ACTAAGTTCAACGATTTGGAGCA 58.614 39.130 0.00 0.00 33.06 4.26
4082 7443 6.170506 ACTAAGTTCAACGATTTGGAGCATA 58.829 36.000 0.00 0.00 33.06 3.14
4086 7447 3.937814 TCAACGATTTGGAGCATACTGT 58.062 40.909 0.00 0.00 33.06 3.55
4089 7450 3.937814 ACGATTTGGAGCATACTGTTGA 58.062 40.909 0.00 0.00 0.00 3.18
4092 7453 4.393062 CGATTTGGAGCATACTGTTGAGTT 59.607 41.667 0.00 0.00 33.21 3.01
4123 7488 1.209621 GTCACTATGGGGCCCACTTA 58.790 55.000 31.54 17.08 35.80 2.24
4140 7505 0.542805 TTATAAGGGGGTGTGTCGCC 59.457 55.000 0.00 0.00 46.75 5.54
4163 7528 7.834068 CCTGTTGGCACATACATATATACTC 57.166 40.000 0.00 0.00 39.30 2.59
4164 7529 6.531594 CCTGTTGGCACATACATATATACTCG 59.468 42.308 0.00 0.00 39.30 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 150 9.627123 TTACCTTTCCTTGATAACATCCAATAG 57.373 33.333 0.00 0.00 0.00 1.73
192 199 6.270815 CCCATTTGCATAGAAATCAGTTCAG 58.729 40.000 0.00 0.00 38.86 3.02
243 250 1.084289 GTCACAAACGGGCAGATACC 58.916 55.000 0.00 0.00 0.00 2.73
270 277 8.865590 TCTTAACATTTGCAAACTTTCCTAAC 57.134 30.769 15.41 0.00 0.00 2.34
324 331 6.576662 TTTAGGAAACAAACAACAGACACA 57.423 33.333 0.00 0.00 0.00 3.72
484 491 9.257651 ACGGATCTAACTTCCTTAAATTATTCG 57.742 33.333 0.00 0.00 0.00 3.34
573 580 2.042762 CCCCTCCCATCCTGGTCA 59.957 66.667 0.00 0.00 35.17 4.02
764 780 2.806244 CGGTGCGATAATTAGAAAGGGG 59.194 50.000 0.00 0.00 0.00 4.79
784 2168 5.478001 GTGCACGTAGAATACAATACAACG 58.522 41.667 0.00 0.00 43.24 4.10
798 2182 1.133598 TCCATTAGTCGGTGCACGTAG 59.866 52.381 11.45 4.98 44.69 3.51
818 2204 2.866028 GTACGTGTCGCCGACTCT 59.134 61.111 19.12 7.51 33.15 3.24
865 2252 3.774734 TCCAAGCGATTATAGGCTCCTA 58.225 45.455 0.00 0.00 38.88 2.94
878 2265 1.795170 GCAACAAGCCTTCCAAGCGA 61.795 55.000 0.00 0.00 37.23 4.93
936 2360 3.725740 GCAATTTTATGCCTGTTCGATCG 59.274 43.478 9.36 9.36 40.49 3.69
974 2398 9.443323 TTGCTATTTGCTAACTTACAAGATACA 57.557 29.630 0.00 0.00 43.37 2.29
1024 4173 1.134175 GACGCTCAAGAGGAAGAGGAG 59.866 57.143 0.00 0.00 32.54 3.69
1244 4393 3.063861 CGCAAAACAGATCGAATGGATGA 59.936 43.478 6.03 0.00 34.82 2.92
1248 4397 2.508867 CACGCAAAACAGATCGAATGG 58.491 47.619 6.03 0.00 0.00 3.16
1271 4420 3.129638 GCTTCTACTTCGAGTGAGATGGT 59.870 47.826 0.00 0.00 0.00 3.55
1391 4563 2.027625 CTGAAGTCGGTGCCGTTCC 61.028 63.158 10.60 0.67 40.74 3.62
1564 4736 5.679894 GCAGCATATATATACACTCACCGCT 60.680 44.000 0.00 0.00 0.00 5.52
1587 4779 1.305930 AAATTCAGTCGAAGGCCCGC 61.306 55.000 0.00 0.00 33.74 6.13
1589 4781 1.886542 ACAAAATTCAGTCGAAGGCCC 59.113 47.619 0.00 0.00 33.74 5.80
1590 4782 2.552315 TCACAAAATTCAGTCGAAGGCC 59.448 45.455 0.00 0.00 33.74 5.19
1612 4804 1.268032 CGTCGCATTTAGGCACATTCC 60.268 52.381 0.00 0.00 0.00 3.01
1672 4868 0.745845 CGCCCAAGATGAACAGGGAG 60.746 60.000 0.00 0.00 44.30 4.30
1750 4946 0.032403 TGTGTGGCACGTAGGTGTAC 59.968 55.000 16.36 15.12 46.13 2.90
1772 4968 1.400242 GCCGCTTGTGATCTTGTTGAC 60.400 52.381 0.00 0.00 0.00 3.18
1845 5053 4.580868 TGGACGGTATCTAGATGAGCTAG 58.419 47.826 15.79 0.00 46.57 3.42
1846 5054 4.635699 TGGACGGTATCTAGATGAGCTA 57.364 45.455 15.79 0.00 0.00 3.32
1848 5056 5.590663 TCATATGGACGGTATCTAGATGAGC 59.409 44.000 15.79 8.10 40.44 4.26
1851 5059 9.289782 TCATATCATATGGACGGTATCTAGATG 57.710 37.037 15.79 1.17 38.51 2.90
1853 5061 9.508642 GATCATATCATATGGACGGTATCTAGA 57.491 37.037 4.76 0.00 0.00 2.43
1854 5062 8.447053 CGATCATATCATATGGACGGTATCTAG 58.553 40.741 4.76 0.00 0.00 2.43
1855 5063 7.937394 ACGATCATATCATATGGACGGTATCTA 59.063 37.037 20.08 0.00 0.00 1.98
1858 5066 6.961360 ACGATCATATCATATGGACGGTAT 57.039 37.500 20.08 2.87 0.00 2.73
1859 5067 7.717875 TGATACGATCATATCATATGGACGGTA 59.282 37.037 20.08 12.02 36.79 4.02
1888 5096 4.521062 AGCCCGATCAGCGTCTGC 62.521 66.667 0.00 0.00 43.24 4.26
1889 5097 2.584418 CAGCCCGATCAGCGTCTG 60.584 66.667 0.00 1.02 38.67 3.51
2017 5225 1.664649 CAGGTCGTTGAAGCGCTCA 60.665 57.895 12.06 8.04 0.00 4.26
2018 5226 1.618640 GACAGGTCGTTGAAGCGCTC 61.619 60.000 12.06 4.99 0.00 5.03
2061 5269 0.969409 GAGGCTGCAAATTCCCTGCT 60.969 55.000 0.50 0.00 40.59 4.24
2068 5276 0.251474 TGCTCTGGAGGCTGCAAATT 60.251 50.000 10.72 0.00 32.12 1.82
2071 5279 1.303074 CTTGCTCTGGAGGCTGCAA 60.303 57.895 10.72 9.51 42.16 4.08
2077 5285 1.153549 GGCGTACTTGCTCTGGAGG 60.154 63.158 0.00 0.00 34.52 4.30
2082 5290 4.796231 CGCCGGCGTACTTGCTCT 62.796 66.667 39.71 0.00 34.52 4.09
2101 5309 1.589196 GTCGCCGTACATGAGCCTC 60.589 63.158 0.00 0.00 0.00 4.70
2146 5354 4.083862 AAGCTCCGGGGAGAACGC 62.084 66.667 18.75 3.77 44.53 4.84
2227 5435 3.052455 ACACATGTGCTAATCAACCGA 57.948 42.857 25.68 0.00 0.00 4.69
2241 5449 4.466567 TTGCTAACACGAGAAACACATG 57.533 40.909 0.00 0.00 0.00 3.21
2263 5471 8.565896 TTGTTGATGTTGCTAATTAGAGATGT 57.434 30.769 16.85 0.00 0.00 3.06
2277 5485 4.983538 TGCATGCTTAACTTGTTGATGTTG 59.016 37.500 20.33 0.00 0.00 3.33
2371 5598 1.792118 TATCCGTCCCGTGAGCATCG 61.792 60.000 0.00 0.00 38.61 3.84
2372 5599 0.603569 ATATCCGTCCCGTGAGCATC 59.396 55.000 0.00 0.00 0.00 3.91
2373 5600 0.318441 CATATCCGTCCCGTGAGCAT 59.682 55.000 0.00 0.00 0.00 3.79
2430 5680 3.420606 CACTGCTGAGCGCACAGG 61.421 66.667 31.35 20.09 45.47 4.00
2578 5829 8.590719 AAGAAGAAGGAGAACGTTACTAAAAG 57.409 34.615 0.00 0.00 0.00 2.27
2627 5891 4.363990 ACACGCCACTGCTCCTCG 62.364 66.667 0.00 0.00 34.43 4.63
2681 5949 4.823442 TGGATGCATGAAATTAGCAGTAGG 59.177 41.667 2.46 0.00 42.14 3.18
2703 5975 6.401047 AGATTGGTGGCATTCTAATTCATG 57.599 37.500 0.00 0.00 0.00 3.07
2704 5976 6.837568 AGAAGATTGGTGGCATTCTAATTCAT 59.162 34.615 0.00 0.00 0.00 2.57
2840 6112 2.046892 GACATGCCACACCTCGCT 60.047 61.111 0.00 0.00 0.00 4.93
2881 6153 3.688185 ACATGTAGCATTGCTGTTCTGAG 59.312 43.478 21.31 6.99 40.10 3.35
2882 6154 3.678289 ACATGTAGCATTGCTGTTCTGA 58.322 40.909 21.31 0.00 40.10 3.27
2883 6155 4.392754 TGTACATGTAGCATTGCTGTTCTG 59.607 41.667 21.31 14.21 40.10 3.02
2884 6156 4.578871 TGTACATGTAGCATTGCTGTTCT 58.421 39.130 21.31 0.51 40.10 3.01
2885 6157 4.944962 TGTACATGTAGCATTGCTGTTC 57.055 40.909 21.31 9.46 40.10 3.18
2886 6158 5.460646 GTTTGTACATGTAGCATTGCTGTT 58.539 37.500 21.31 2.86 40.10 3.16
2887 6159 4.378356 CGTTTGTACATGTAGCATTGCTGT 60.378 41.667 21.31 13.20 40.10 4.40
2888 6160 4.090729 CGTTTGTACATGTAGCATTGCTG 58.909 43.478 21.31 7.71 40.10 4.41
2889 6161 4.000325 TCGTTTGTACATGTAGCATTGCT 59.000 39.130 16.63 16.63 43.41 3.91
2890 6162 4.335082 TCGTTTGTACATGTAGCATTGC 57.665 40.909 5.62 0.00 0.00 3.56
2891 6163 7.960195 TGTAAATCGTTTGTACATGTAGCATTG 59.040 33.333 5.62 0.00 0.00 2.82
2892 6164 8.035165 TGTAAATCGTTTGTACATGTAGCATT 57.965 30.769 5.62 1.51 0.00 3.56
2893 6165 7.201609 CCTGTAAATCGTTTGTACATGTAGCAT 60.202 37.037 5.62 0.00 0.00 3.79
2894 6166 6.091577 CCTGTAAATCGTTTGTACATGTAGCA 59.908 38.462 5.62 5.01 0.00 3.49
2895 6167 6.475207 CCTGTAAATCGTTTGTACATGTAGC 58.525 40.000 5.62 2.31 0.00 3.58
2896 6168 6.312918 AGCCTGTAAATCGTTTGTACATGTAG 59.687 38.462 5.62 0.00 0.00 2.74
2897 6169 6.167685 AGCCTGTAAATCGTTTGTACATGTA 58.832 36.000 0.08 0.08 0.00 2.29
2898 6170 5.001232 AGCCTGTAAATCGTTTGTACATGT 58.999 37.500 2.69 2.69 0.00 3.21
2899 6171 5.545658 AGCCTGTAAATCGTTTGTACATG 57.454 39.130 0.00 0.00 0.00 3.21
2900 6172 6.569179 AAAGCCTGTAAATCGTTTGTACAT 57.431 33.333 0.00 0.00 0.00 2.29
2901 6173 6.380095 AAAAGCCTGTAAATCGTTTGTACA 57.620 33.333 0.00 0.00 0.00 2.90
2902 6174 7.354257 TGTAAAAGCCTGTAAATCGTTTGTAC 58.646 34.615 0.00 0.00 0.00 2.90
2903 6175 7.308109 CCTGTAAAAGCCTGTAAATCGTTTGTA 60.308 37.037 0.00 0.00 0.00 2.41
2904 6176 6.380095 TGTAAAAGCCTGTAAATCGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
2905 6177 5.856455 CCTGTAAAAGCCTGTAAATCGTTTG 59.144 40.000 0.00 0.00 0.00 2.93
2906 6178 5.766174 TCCTGTAAAAGCCTGTAAATCGTTT 59.234 36.000 0.00 0.00 0.00 3.60
2907 6179 5.310451 TCCTGTAAAAGCCTGTAAATCGTT 58.690 37.500 0.00 0.00 0.00 3.85
2908 6180 4.901868 TCCTGTAAAAGCCTGTAAATCGT 58.098 39.130 0.00 0.00 0.00 3.73
2909 6181 5.220854 CCATCCTGTAAAAGCCTGTAAATCG 60.221 44.000 0.00 0.00 0.00 3.34
2910 6182 5.652452 ACCATCCTGTAAAAGCCTGTAAATC 59.348 40.000 0.00 0.00 0.00 2.17
2911 6183 5.580022 ACCATCCTGTAAAAGCCTGTAAAT 58.420 37.500 0.00 0.00 0.00 1.40
2912 6184 4.993028 ACCATCCTGTAAAAGCCTGTAAA 58.007 39.130 0.00 0.00 0.00 2.01
2913 6185 4.650972 ACCATCCTGTAAAAGCCTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
2914 6186 4.650972 AACCATCCTGTAAAAGCCTGTA 57.349 40.909 0.00 0.00 0.00 2.74
2915 6187 3.525800 AACCATCCTGTAAAAGCCTGT 57.474 42.857 0.00 0.00 0.00 4.00
2916 6188 5.888161 AGATTAACCATCCTGTAAAAGCCTG 59.112 40.000 0.00 0.00 31.20 4.85
2917 6189 6.079712 AGATTAACCATCCTGTAAAAGCCT 57.920 37.500 0.00 0.00 31.20 4.58
2918 6190 6.377146 TCAAGATTAACCATCCTGTAAAAGCC 59.623 38.462 0.00 0.00 31.20 4.35
2919 6191 7.391148 TCAAGATTAACCATCCTGTAAAAGC 57.609 36.000 0.00 0.00 31.20 3.51
2920 6192 9.793252 CAATCAAGATTAACCATCCTGTAAAAG 57.207 33.333 0.00 0.00 31.20 2.27
2921 6193 8.748412 CCAATCAAGATTAACCATCCTGTAAAA 58.252 33.333 0.00 0.00 31.20 1.52
2922 6194 7.893302 ACCAATCAAGATTAACCATCCTGTAAA 59.107 33.333 0.00 0.00 31.20 2.01
2923 6195 7.410174 ACCAATCAAGATTAACCATCCTGTAA 58.590 34.615 0.00 0.00 31.20 2.41
2924 6196 6.969043 ACCAATCAAGATTAACCATCCTGTA 58.031 36.000 0.00 0.00 31.20 2.74
2925 6197 5.831103 ACCAATCAAGATTAACCATCCTGT 58.169 37.500 0.00 0.00 31.20 4.00
2926 6198 5.887598 TGACCAATCAAGATTAACCATCCTG 59.112 40.000 0.00 0.00 31.20 3.86
2927 6199 6.078456 TGACCAATCAAGATTAACCATCCT 57.922 37.500 0.00 0.00 31.20 3.24
2928 6200 6.773976 TTGACCAATCAAGATTAACCATCC 57.226 37.500 0.00 0.00 40.01 3.51
2941 6213 2.419990 CCGCTCACCTATTGACCAATCA 60.420 50.000 0.00 0.00 32.50 2.57
2942 6214 2.213499 CCGCTCACCTATTGACCAATC 58.787 52.381 0.00 0.00 32.50 2.67
2943 6215 1.134098 CCCGCTCACCTATTGACCAAT 60.134 52.381 0.64 0.64 34.93 3.16
2944 6216 0.251916 CCCGCTCACCTATTGACCAA 59.748 55.000 0.00 0.00 0.00 3.67
2945 6217 1.622607 CCCCGCTCACCTATTGACCA 61.623 60.000 0.00 0.00 0.00 4.02
2946 6218 1.146263 CCCCGCTCACCTATTGACC 59.854 63.158 0.00 0.00 0.00 4.02
2947 6219 1.523938 GCCCCGCTCACCTATTGAC 60.524 63.158 0.00 0.00 0.00 3.18
2948 6220 2.908015 GCCCCGCTCACCTATTGA 59.092 61.111 0.00 0.00 0.00 2.57
2949 6221 2.588877 CGCCCCGCTCACCTATTG 60.589 66.667 0.00 0.00 0.00 1.90
2950 6222 3.861797 CCGCCCCGCTCACCTATT 61.862 66.667 0.00 0.00 0.00 1.73
2988 6260 2.171003 CAATCACAAACCTCTTCCCCC 58.829 52.381 0.00 0.00 0.00 5.40
2989 6261 2.171003 CCAATCACAAACCTCTTCCCC 58.829 52.381 0.00 0.00 0.00 4.81
2990 6262 2.876581 ACCAATCACAAACCTCTTCCC 58.123 47.619 0.00 0.00 0.00 3.97
2991 6263 3.636764 ACAACCAATCACAAACCTCTTCC 59.363 43.478 0.00 0.00 0.00 3.46
2992 6264 4.918810 ACAACCAATCACAAACCTCTTC 57.081 40.909 0.00 0.00 0.00 2.87
2993 6265 6.126409 TCTAACAACCAATCACAAACCTCTT 58.874 36.000 0.00 0.00 0.00 2.85
2994 6266 5.690865 TCTAACAACCAATCACAAACCTCT 58.309 37.500 0.00 0.00 0.00 3.69
2995 6267 6.381801 CATCTAACAACCAATCACAAACCTC 58.618 40.000 0.00 0.00 0.00 3.85
2996 6268 5.243730 CCATCTAACAACCAATCACAAACCT 59.756 40.000 0.00 0.00 0.00 3.50
2997 6269 5.010617 ACCATCTAACAACCAATCACAAACC 59.989 40.000 0.00 0.00 0.00 3.27
2998 6270 6.084326 ACCATCTAACAACCAATCACAAAC 57.916 37.500 0.00 0.00 0.00 2.93
2999 6271 6.432783 CCTACCATCTAACAACCAATCACAAA 59.567 38.462 0.00 0.00 0.00 2.83
3000 6272 5.943416 CCTACCATCTAACAACCAATCACAA 59.057 40.000 0.00 0.00 0.00 3.33
3001 6273 5.249622 TCCTACCATCTAACAACCAATCACA 59.750 40.000 0.00 0.00 0.00 3.58
3002 6274 5.741011 TCCTACCATCTAACAACCAATCAC 58.259 41.667 0.00 0.00 0.00 3.06
3003 6275 5.629133 GCTCCTACCATCTAACAACCAATCA 60.629 44.000 0.00 0.00 0.00 2.57
3004 6276 4.816925 GCTCCTACCATCTAACAACCAATC 59.183 45.833 0.00 0.00 0.00 2.67
3005 6277 4.683400 CGCTCCTACCATCTAACAACCAAT 60.683 45.833 0.00 0.00 0.00 3.16
3006 6278 3.369052 CGCTCCTACCATCTAACAACCAA 60.369 47.826 0.00 0.00 0.00 3.67
3007 6279 2.167693 CGCTCCTACCATCTAACAACCA 59.832 50.000 0.00 0.00 0.00 3.67
3008 6280 2.167900 ACGCTCCTACCATCTAACAACC 59.832 50.000 0.00 0.00 0.00 3.77
3009 6281 3.187700 CACGCTCCTACCATCTAACAAC 58.812 50.000 0.00 0.00 0.00 3.32
3010 6282 2.829720 ACACGCTCCTACCATCTAACAA 59.170 45.455 0.00 0.00 0.00 2.83
3011 6283 2.453521 ACACGCTCCTACCATCTAACA 58.546 47.619 0.00 0.00 0.00 2.41
3012 6284 4.644103 TTACACGCTCCTACCATCTAAC 57.356 45.455 0.00 0.00 0.00 2.34
3013 6285 5.657474 CTTTTACACGCTCCTACCATCTAA 58.343 41.667 0.00 0.00 0.00 2.10
3014 6286 4.441079 GCTTTTACACGCTCCTACCATCTA 60.441 45.833 0.00 0.00 0.00 1.98
3015 6287 3.679083 GCTTTTACACGCTCCTACCATCT 60.679 47.826 0.00 0.00 0.00 2.90
3016 6288 2.608090 GCTTTTACACGCTCCTACCATC 59.392 50.000 0.00 0.00 0.00 3.51
3017 6289 2.629051 GCTTTTACACGCTCCTACCAT 58.371 47.619 0.00 0.00 0.00 3.55
3018 6290 1.670674 CGCTTTTACACGCTCCTACCA 60.671 52.381 0.00 0.00 0.00 3.25
3019 6291 0.997196 CGCTTTTACACGCTCCTACC 59.003 55.000 0.00 0.00 0.00 3.18
3020 6292 1.389106 CACGCTTTTACACGCTCCTAC 59.611 52.381 0.00 0.00 0.00 3.18
3021 6293 1.000060 ACACGCTTTTACACGCTCCTA 60.000 47.619 0.00 0.00 0.00 2.94
3022 6294 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
3023 6295 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
3024 6296 2.473984 ACTTACACGCTTTTACACGCTC 59.526 45.455 0.00 0.00 0.00 5.03
3025 6297 2.473984 GACTTACACGCTTTTACACGCT 59.526 45.455 0.00 0.00 0.00 5.07
3026 6298 2.473984 AGACTTACACGCTTTTACACGC 59.526 45.455 0.00 0.00 0.00 5.34
3027 6299 4.703899 AAGACTTACACGCTTTTACACG 57.296 40.909 0.00 0.00 0.00 4.49
3028 6300 5.803118 ACAAAGACTTACACGCTTTTACAC 58.197 37.500 0.00 0.00 30.00 2.90
3029 6301 7.225145 ACATACAAAGACTTACACGCTTTTACA 59.775 33.333 0.00 0.00 30.00 2.41
3030 6302 7.570161 ACATACAAAGACTTACACGCTTTTAC 58.430 34.615 0.00 0.00 30.00 2.01
3031 6303 7.654520 AGACATACAAAGACTTACACGCTTTTA 59.345 33.333 0.00 0.00 30.00 1.52
3032 6304 6.482308 AGACATACAAAGACTTACACGCTTTT 59.518 34.615 0.00 0.00 30.00 2.27
3033 6305 5.989777 AGACATACAAAGACTTACACGCTTT 59.010 36.000 0.00 0.00 32.46 3.51
3034 6306 5.539048 AGACATACAAAGACTTACACGCTT 58.461 37.500 0.00 0.00 0.00 4.68
3035 6307 5.135508 AGACATACAAAGACTTACACGCT 57.864 39.130 0.00 0.00 0.00 5.07
3036 6308 5.004535 GCTAGACATACAAAGACTTACACGC 59.995 44.000 0.00 0.00 0.00 5.34
3037 6309 6.090783 TGCTAGACATACAAAGACTTACACG 58.909 40.000 0.00 0.00 0.00 4.49
3038 6310 8.480643 AATGCTAGACATACAAAGACTTACAC 57.519 34.615 0.00 0.00 38.34 2.90
3039 6311 9.502091 AAAATGCTAGACATACAAAGACTTACA 57.498 29.630 0.00 0.00 38.34 2.41
3042 6314 8.850156 ACAAAAATGCTAGACATACAAAGACTT 58.150 29.630 0.00 0.00 38.34 3.01
3043 6315 8.396272 ACAAAAATGCTAGACATACAAAGACT 57.604 30.769 0.00 0.00 38.34 3.24
3044 6316 7.750903 GGACAAAAATGCTAGACATACAAAGAC 59.249 37.037 0.00 0.00 38.34 3.01
3045 6317 7.665559 AGGACAAAAATGCTAGACATACAAAGA 59.334 33.333 0.00 0.00 38.34 2.52
3046 6318 7.820648 AGGACAAAAATGCTAGACATACAAAG 58.179 34.615 0.00 0.00 38.34 2.77
3047 6319 7.446931 TGAGGACAAAAATGCTAGACATACAAA 59.553 33.333 0.00 0.00 38.34 2.83
3048 6320 6.939730 TGAGGACAAAAATGCTAGACATACAA 59.060 34.615 0.00 0.00 38.34 2.41
3049 6321 6.472016 TGAGGACAAAAATGCTAGACATACA 58.528 36.000 0.00 0.00 38.34 2.29
3050 6322 6.818644 TCTGAGGACAAAAATGCTAGACATAC 59.181 38.462 0.00 0.00 38.34 2.39
3051 6323 6.946340 TCTGAGGACAAAAATGCTAGACATA 58.054 36.000 0.00 0.00 38.34 2.29
3052 6324 5.809001 TCTGAGGACAAAAATGCTAGACAT 58.191 37.500 0.00 0.00 42.30 3.06
3053 6325 5.227569 TCTGAGGACAAAAATGCTAGACA 57.772 39.130 0.00 0.00 0.00 3.41
3054 6326 5.703130 AGTTCTGAGGACAAAAATGCTAGAC 59.297 40.000 0.00 0.00 0.00 2.59
3055 6327 5.869579 AGTTCTGAGGACAAAAATGCTAGA 58.130 37.500 0.00 0.00 0.00 2.43
3056 6328 6.876257 AGTAGTTCTGAGGACAAAAATGCTAG 59.124 38.462 0.00 0.00 0.00 3.42
3057 6329 6.769512 AGTAGTTCTGAGGACAAAAATGCTA 58.230 36.000 0.00 0.00 0.00 3.49
3058 6330 5.625150 AGTAGTTCTGAGGACAAAAATGCT 58.375 37.500 0.00 0.00 0.00 3.79
3059 6331 5.948992 AGTAGTTCTGAGGACAAAAATGC 57.051 39.130 0.00 0.00 0.00 3.56
3060 6332 7.496529 TCAAGTAGTTCTGAGGACAAAAATG 57.503 36.000 0.00 0.00 0.00 2.32
3061 6333 7.775561 AGTTCAAGTAGTTCTGAGGACAAAAAT 59.224 33.333 0.00 0.00 0.00 1.82
3062 6334 7.065803 CAGTTCAAGTAGTTCTGAGGACAAAAA 59.934 37.037 0.00 0.00 0.00 1.94
3063 6335 6.538742 CAGTTCAAGTAGTTCTGAGGACAAAA 59.461 38.462 0.00 0.00 0.00 2.44
3064 6336 6.049149 CAGTTCAAGTAGTTCTGAGGACAAA 58.951 40.000 0.00 0.00 0.00 2.83
3065 6337 5.453339 CCAGTTCAAGTAGTTCTGAGGACAA 60.453 44.000 0.00 0.00 0.00 3.18
3066 6338 4.039245 CCAGTTCAAGTAGTTCTGAGGACA 59.961 45.833 0.00 0.00 0.00 4.02
3067 6339 4.281182 TCCAGTTCAAGTAGTTCTGAGGAC 59.719 45.833 0.23 0.00 0.00 3.85
3068 6340 4.480115 TCCAGTTCAAGTAGTTCTGAGGA 58.520 43.478 0.23 0.00 0.00 3.71
3069 6341 4.873746 TCCAGTTCAAGTAGTTCTGAGG 57.126 45.455 0.23 0.00 0.00 3.86
3160 6447 4.829968 CCATCGATAGCTCAATCCTCAAT 58.170 43.478 0.00 0.00 0.00 2.57
3161 6448 3.555795 GCCATCGATAGCTCAATCCTCAA 60.556 47.826 8.67 0.00 0.00 3.02
3162 6449 2.028658 GCCATCGATAGCTCAATCCTCA 60.029 50.000 8.67 0.00 0.00 3.86
3163 6450 2.233431 AGCCATCGATAGCTCAATCCTC 59.767 50.000 12.84 0.00 32.71 3.71
3164 6451 2.255406 AGCCATCGATAGCTCAATCCT 58.745 47.619 12.84 0.00 32.71 3.24
3165 6452 2.758736 AGCCATCGATAGCTCAATCC 57.241 50.000 12.84 0.00 32.71 3.01
3166 6453 3.175152 CGTAGCCATCGATAGCTCAATC 58.825 50.000 21.74 10.07 40.56 2.67
3253 6540 5.824421 ACTTCCATCTCCATCAGAAACATT 58.176 37.500 0.00 0.00 33.62 2.71
3295 6582 1.919956 GCATCTGGAGTGCACTGTGC 61.920 60.000 27.27 25.15 45.29 4.57
3296 6583 0.604511 TGCATCTGGAGTGCACTGTG 60.605 55.000 27.27 15.05 46.76 3.66
3297 6584 1.756665 TGCATCTGGAGTGCACTGT 59.243 52.632 27.27 0.00 46.76 3.55
3298 6585 4.707791 TGCATCTGGAGTGCACTG 57.292 55.556 27.27 10.54 46.76 3.66
3351 6638 6.417930 GCGTAAAAGGAATCCAATTATGAAGC 59.582 38.462 15.86 9.18 0.00 3.86
3367 6654 4.407818 TGCGATACAAAATGCGTAAAAGG 58.592 39.130 0.00 0.00 0.00 3.11
3369 6656 4.617645 GGTTGCGATACAAAATGCGTAAAA 59.382 37.500 0.00 0.00 40.82 1.52
3377 6664 3.417101 TGGTGAGGTTGCGATACAAAAT 58.583 40.909 0.00 0.00 40.82 1.82
3378 6665 2.852449 TGGTGAGGTTGCGATACAAAA 58.148 42.857 0.00 0.00 40.82 2.44
3380 6667 2.550606 GTTTGGTGAGGTTGCGATACAA 59.449 45.455 0.00 0.00 35.33 2.41
3381 6668 2.147958 GTTTGGTGAGGTTGCGATACA 58.852 47.619 0.00 0.00 0.00 2.29
3382 6669 2.147958 TGTTTGGTGAGGTTGCGATAC 58.852 47.619 0.00 0.00 0.00 2.24
3383 6670 2.037902 TCTGTTTGGTGAGGTTGCGATA 59.962 45.455 0.00 0.00 0.00 2.92
3395 6710 2.094234 GTGTGGCAAAAGTCTGTTTGGT 60.094 45.455 0.00 0.00 38.64 3.67
3397 6712 3.508744 AGTGTGGCAAAAGTCTGTTTG 57.491 42.857 0.00 0.00 40.72 2.93
3408 6723 5.293560 GGCTTTATTTGTAAAGTGTGGCAA 58.706 37.500 9.04 0.00 38.82 4.52
3409 6724 4.262249 GGGCTTTATTTGTAAAGTGTGGCA 60.262 41.667 9.04 0.00 38.82 4.92
3489 6804 9.849166 GGAGCTTAGTAACTGTATAGATGATTC 57.151 37.037 0.00 0.00 0.00 2.52
3490 6805 8.808092 GGGAGCTTAGTAACTGTATAGATGATT 58.192 37.037 0.00 0.00 0.00 2.57
3491 6806 7.950684 TGGGAGCTTAGTAACTGTATAGATGAT 59.049 37.037 0.00 0.00 0.00 2.45
3533 6848 0.376852 CCAATAACCACGATGCACCG 59.623 55.000 0.00 0.00 0.00 4.94
3548 6863 2.438795 CCCACAACCGACCCCAAT 59.561 61.111 0.00 0.00 0.00 3.16
3573 6888 1.963338 AGCCGAAACACAGCTCAGC 60.963 57.895 0.00 0.00 28.40 4.26
3574 6889 0.882042 ACAGCCGAAACACAGCTCAG 60.882 55.000 0.00 0.00 33.70 3.35
3577 6892 1.070134 TCTAACAGCCGAAACACAGCT 59.930 47.619 0.00 0.00 37.32 4.24
3596 6911 3.057456 CACTGAGTAGGCCCGTATACATC 60.057 52.174 0.00 0.00 0.00 3.06
3650 6965 2.223548 ACACACACTTACGCGTACAAGA 60.224 45.455 24.51 8.34 0.00 3.02
3690 7010 1.019673 CCATCAACGCTCCATTGAGG 58.980 55.000 0.00 0.00 39.36 3.86
3703 7023 1.545428 GCTGACAACCTGGACCATCAA 60.545 52.381 0.00 0.00 0.00 2.57
3727 7047 4.758251 CACCGCCGCACCTGATCA 62.758 66.667 0.00 0.00 0.00 2.92
3747 7067 3.192001 CAGGGAATCAATATGATTGGCGG 59.808 47.826 10.12 0.00 46.20 6.13
3782 7112 8.865001 CAAAGAACCGATAAAGAAAAACACAAA 58.135 29.630 0.00 0.00 0.00 2.83
3897 7251 8.389603 ACAAAAAGTTCAGTGCATGTTTAAATG 58.610 29.630 0.00 0.00 0.00 2.32
3905 7259 8.572828 TGTATAAACAAAAAGTTCAGTGCATG 57.427 30.769 0.00 0.00 40.26 4.06
3908 7262 8.628882 ACTTGTATAAACAAAAAGTTCAGTGC 57.371 30.769 0.00 0.00 44.79 4.40
4019 7376 5.493133 TCAATGTGTGTTAAGTGTTCACC 57.507 39.130 0.00 0.00 0.00 4.02
4064 7425 4.323417 ACAGTATGCTCCAAATCGTTGAA 58.677 39.130 0.00 0.00 42.53 2.69
4080 7441 1.623811 ACGGCCAGAACTCAACAGTAT 59.376 47.619 2.24 0.00 30.14 2.12
4082 7443 0.532862 CACGGCCAGAACTCAACAGT 60.533 55.000 2.24 0.00 0.00 3.55
4086 7447 2.429930 CCCACGGCCAGAACTCAA 59.570 61.111 2.24 0.00 0.00 3.02
4089 7450 3.637273 GACCCCACGGCCAGAACT 61.637 66.667 2.24 0.00 0.00 3.01
4107 7472 2.986728 CCTTATAAGTGGGCCCCATAGT 59.013 50.000 22.27 0.00 35.28 2.12
4123 7488 1.615424 AGGCGACACACCCCCTTAT 60.615 57.895 0.00 0.00 0.00 1.73
4140 7505 7.511809 CGAGTATATATGTATGTGCCAACAG 57.488 40.000 0.00 0.00 40.39 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.