Multiple sequence alignment - TraesCS3B01G163300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G163300 chr3B 100.000 4016 0 0 1 4016 160843465 160839450 0.000000e+00 7417.0
1 TraesCS3B01G163300 chr3B 95.608 683 29 1 3335 4016 739049071 739048389 0.000000e+00 1094.0
2 TraesCS3B01G163300 chr3B 83.861 663 97 10 3335 3992 128050634 128051291 1.230000e-174 623.0
3 TraesCS3B01G163300 chr3B 96.154 52 2 0 26 77 446710720 446710771 7.150000e-13 86.1
4 TraesCS3B01G163300 chr3D 93.858 2263 84 22 405 2647 109968487 109966260 0.000000e+00 3358.0
5 TraesCS3B01G163300 chr3D 88.148 675 53 13 2658 3317 109966159 109965497 0.000000e+00 778.0
6 TraesCS3B01G163300 chr3D 95.495 111 5 0 292 402 506160821 506160711 1.150000e-40 178.0
7 TraesCS3B01G163300 chr3D 77.660 188 33 7 1076 1258 110245409 110245226 5.490000e-19 106.0
8 TraesCS3B01G163300 chr3A 89.741 2242 121 60 401 2571 120356608 120358811 0.000000e+00 2765.0
9 TraesCS3B01G163300 chr3A 91.514 436 24 6 2729 3151 120358928 120359363 4.470000e-164 588.0
10 TraesCS3B01G163300 chr3A 78.075 187 34 6 1076 1258 120223518 120223701 1.180000e-20 111.0
11 TraesCS3B01G163300 chr2A 97.947 682 13 1 3336 4016 400983885 400983204 0.000000e+00 1181.0
12 TraesCS3B01G163300 chr2A 97.654 682 15 1 3336 4016 402971957 402971276 0.000000e+00 1170.0
13 TraesCS3B01G163300 chr2A 90.922 683 56 2 3335 4016 677560890 677560213 0.000000e+00 913.0
14 TraesCS3B01G163300 chr2A 96.262 107 4 0 291 397 16547041 16546935 4.130000e-40 176.0
15 TraesCS3B01G163300 chr4B 95.601 682 30 0 3335 4016 602746404 602747085 0.000000e+00 1094.0
16 TraesCS3B01G163300 chr4B 93.162 117 8 0 82 198 127104343 127104227 5.340000e-39 172.0
17 TraesCS3B01G163300 chr4B 95.652 92 1 2 31 119 127104430 127104339 1.160000e-30 145.0
18 TraesCS3B01G163300 chr5A 93.704 683 41 2 3335 4016 607413784 607413103 0.000000e+00 1022.0
19 TraesCS3B01G163300 chr5A 85.897 78 11 0 1184 1261 495028717 495028640 2.570000e-12 84.2
20 TraesCS3B01G163300 chr6A 92.174 690 51 3 3329 4016 583096217 583096905 0.000000e+00 972.0
21 TraesCS3B01G163300 chr6A 95.536 112 4 1 291 401 150232591 150232480 1.150000e-40 178.0
22 TraesCS3B01G163300 chr6A 95.918 49 2 0 28 76 91340292 91340244 3.330000e-11 80.5
23 TraesCS3B01G163300 chr1B 85.155 613 85 6 3337 3948 689465532 689466139 1.230000e-174 623.0
24 TraesCS3B01G163300 chr1B 98.077 52 1 0 26 77 612821825 612821876 1.540000e-14 91.6
25 TraesCS3B01G163300 chr2D 96.407 167 6 0 31 197 435079965 435079799 3.950000e-70 276.0
26 TraesCS3B01G163300 chr2D 98.000 50 1 0 28 77 86028830 86028879 1.990000e-13 87.9
27 TraesCS3B01G163300 chr2D 100.000 28 0 0 2925 2952 11083665 11083692 7.000000e-03 52.8
28 TraesCS3B01G163300 chr7B 97.170 106 3 0 291 396 36040732 36040837 3.190000e-41 180.0
29 TraesCS3B01G163300 chr7B 91.781 73 6 0 1184 1256 7357961 7357889 7.100000e-18 102.0
30 TraesCS3B01G163300 chr2B 98.058 103 2 0 291 393 364920166 364920268 3.190000e-41 180.0
31 TraesCS3B01G163300 chr2B 96.262 107 4 0 291 397 182707777 182707883 4.130000e-40 176.0
32 TraesCS3B01G163300 chr2B 100.000 28 0 0 2925 2952 16893698 16893725 7.000000e-03 52.8
33 TraesCS3B01G163300 chr7D 95.455 110 5 0 291 400 234218307 234218198 4.130000e-40 176.0
34 TraesCS3B01G163300 chr7D 98.077 52 1 0 26 77 9211760 9211811 1.540000e-14 91.6
35 TraesCS3B01G163300 chr1A 94.643 112 6 0 291 402 56105913 56105802 1.480000e-39 174.0
36 TraesCS3B01G163300 chr7A 94.643 112 5 1 291 402 192671958 192671848 5.340000e-39 172.0
37 TraesCS3B01G163300 chr7A 77.778 198 42 2 1081 1277 69901513 69901709 1.960000e-23 121.0
38 TraesCS3B01G163300 chr7A 91.781 73 6 0 1184 1256 69974899 69974971 7.100000e-18 102.0
39 TraesCS3B01G163300 chrUn 78.689 183 35 3 1081 1261 84040059 84039879 7.050000e-23 119.0
40 TraesCS3B01G163300 chrUn 100.000 28 0 0 2925 2952 248331489 248331516 7.000000e-03 52.8
41 TraesCS3B01G163300 chr6B 96.970 33 1 0 2831 2863 545465418 545465386 5.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G163300 chr3B 160839450 160843465 4015 True 7417.0 7417 100.0000 1 4016 1 chr3B.!!$R1 4015
1 TraesCS3B01G163300 chr3B 739048389 739049071 682 True 1094.0 1094 95.6080 3335 4016 1 chr3B.!!$R2 681
2 TraesCS3B01G163300 chr3B 128050634 128051291 657 False 623.0 623 83.8610 3335 3992 1 chr3B.!!$F1 657
3 TraesCS3B01G163300 chr3D 109965497 109968487 2990 True 2068.0 3358 91.0030 405 3317 2 chr3D.!!$R3 2912
4 TraesCS3B01G163300 chr3A 120356608 120359363 2755 False 1676.5 2765 90.6275 401 3151 2 chr3A.!!$F2 2750
5 TraesCS3B01G163300 chr2A 400983204 400983885 681 True 1181.0 1181 97.9470 3336 4016 1 chr2A.!!$R2 680
6 TraesCS3B01G163300 chr2A 402971276 402971957 681 True 1170.0 1170 97.6540 3336 4016 1 chr2A.!!$R3 680
7 TraesCS3B01G163300 chr2A 677560213 677560890 677 True 913.0 913 90.9220 3335 4016 1 chr2A.!!$R4 681
8 TraesCS3B01G163300 chr4B 602746404 602747085 681 False 1094.0 1094 95.6010 3335 4016 1 chr4B.!!$F1 681
9 TraesCS3B01G163300 chr5A 607413103 607413784 681 True 1022.0 1022 93.7040 3335 4016 1 chr5A.!!$R2 681
10 TraesCS3B01G163300 chr6A 583096217 583096905 688 False 972.0 972 92.1740 3329 4016 1 chr6A.!!$F1 687
11 TraesCS3B01G163300 chr1B 689465532 689466139 607 False 623.0 623 85.1550 3337 3948 1 chr1B.!!$F2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.105913 TCCAGTCCAAACCCAAACCC 60.106 55.000 0.00 0.0 0.00 4.11 F
196 197 0.109919 TCGTATGTATAGCAGCGCCG 60.110 55.000 2.29 0.0 32.24 6.46 F
219 220 0.313043 TAGTAATACTCTGCCGCCGC 59.687 55.000 0.00 0.0 0.00 6.53 F
236 237 0.445436 CGCATGCAGGAACAGAACTC 59.555 55.000 19.57 0.0 0.00 3.01 F
237 238 0.807496 GCATGCAGGAACAGAACTCC 59.193 55.000 14.21 0.0 0.00 3.85 F
303 304 0.841289 ACTCAACCCTCCGTTTGGAA 59.159 50.000 0.00 0.0 45.87 3.53 F
372 373 1.070758 ACATCCACTTCTGCGACAAGT 59.929 47.619 0.00 0.0 34.24 3.16 F
1571 1612 1.084289 GTCGCCGCCATTTCTTTACT 58.916 50.000 0.00 0.0 0.00 2.24 F
2411 2501 0.820891 CATCAGTATGGGGGCACAGC 60.821 60.000 0.00 0.0 36.16 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1852 0.901124 AGAAGAGAATGCGGCTCTGT 59.099 50.000 0.0 0.0 41.66 3.41 R
1860 1904 0.935831 CAATGCACACACAACCAGCG 60.936 55.000 0.0 0.0 0.00 5.18 R
2143 2187 1.106944 CACCGAACTGCTTGGGGTTT 61.107 55.000 0.0 0.0 29.47 3.27 R
2189 2233 2.578664 GGGAAAAATGGCAGCGGG 59.421 61.111 0.0 0.0 0.00 6.13 R
2261 2324 2.998670 CAACGCATCTCTGTCATTCAGT 59.001 45.455 0.0 0.0 43.97 3.41 R
2331 2400 1.083401 CGTTCAGTGTTGCTGTCGC 60.083 57.895 0.0 0.0 45.23 5.19 R
2381 2457 2.740447 CCATACTGATGATGATGGCACG 59.260 50.000 0.0 0.0 34.73 5.34 R
2595 2697 0.249996 CAGGAACCACGTTAACCGGT 60.250 55.000 0.0 0.0 42.24 5.28 R
3284 3503 0.390340 AATCGCACGCATGTCACTCT 60.390 50.000 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.937201 TGAGTTCATCGCATGGTATAGT 57.063 40.909 0.00 0.00 0.00 2.12
23 24 6.013842 TGAGTTCATCGCATGGTATAGTAG 57.986 41.667 0.00 0.00 0.00 2.57
24 25 5.535030 TGAGTTCATCGCATGGTATAGTAGT 59.465 40.000 0.00 0.00 0.00 2.73
25 26 6.713450 TGAGTTCATCGCATGGTATAGTAGTA 59.287 38.462 0.00 0.00 0.00 1.82
26 27 7.229907 TGAGTTCATCGCATGGTATAGTAGTAA 59.770 37.037 0.00 0.00 0.00 2.24
27 28 7.368833 AGTTCATCGCATGGTATAGTAGTAAC 58.631 38.462 0.00 0.00 0.00 2.50
28 29 5.934921 TCATCGCATGGTATAGTAGTAACG 58.065 41.667 0.00 0.00 0.00 3.18
29 30 5.702209 TCATCGCATGGTATAGTAGTAACGA 59.298 40.000 0.00 0.00 0.00 3.85
30 31 6.205270 TCATCGCATGGTATAGTAGTAACGAA 59.795 38.462 0.00 0.00 0.00 3.85
31 32 6.375945 TCGCATGGTATAGTAGTAACGAAA 57.624 37.500 0.00 0.00 0.00 3.46
32 33 6.973843 TCGCATGGTATAGTAGTAACGAAAT 58.026 36.000 0.00 0.00 0.00 2.17
33 34 7.428020 TCGCATGGTATAGTAGTAACGAAATT 58.572 34.615 0.00 0.00 0.00 1.82
34 35 7.380333 TCGCATGGTATAGTAGTAACGAAATTG 59.620 37.037 0.00 0.00 0.00 2.32
35 36 7.288672 GCATGGTATAGTAGTAACGAAATTGC 58.711 38.462 0.00 0.00 0.00 3.56
36 37 7.170998 GCATGGTATAGTAGTAACGAAATTGCT 59.829 37.037 0.00 0.00 37.06 3.91
37 38 9.042008 CATGGTATAGTAGTAACGAAATTGCTT 57.958 33.333 0.00 0.00 34.68 3.91
38 39 8.638685 TGGTATAGTAGTAACGAAATTGCTTC 57.361 34.615 0.00 0.00 34.68 3.86
39 40 8.252417 TGGTATAGTAGTAACGAAATTGCTTCA 58.748 33.333 0.00 0.00 34.68 3.02
40 41 8.538039 GGTATAGTAGTAACGAAATTGCTTCAC 58.462 37.037 0.00 0.00 34.68 3.18
41 42 9.079833 GTATAGTAGTAACGAAATTGCTTCACA 57.920 33.333 0.00 0.00 34.68 3.58
42 43 6.224420 AGTAGTAACGAAATTGCTTCACAC 57.776 37.500 0.00 0.00 34.68 3.82
43 44 5.756347 AGTAGTAACGAAATTGCTTCACACA 59.244 36.000 0.00 0.00 34.68 3.72
44 45 4.844267 AGTAACGAAATTGCTTCACACAC 58.156 39.130 0.00 0.00 33.17 3.82
45 46 2.383298 ACGAAATTGCTTCACACACG 57.617 45.000 0.00 0.00 33.17 4.49
46 47 1.937223 ACGAAATTGCTTCACACACGA 59.063 42.857 0.00 0.00 33.17 4.35
47 48 2.286184 ACGAAATTGCTTCACACACGAC 60.286 45.455 0.00 0.00 33.17 4.34
48 49 2.032894 CGAAATTGCTTCACACACGACT 60.033 45.455 0.00 0.00 33.17 4.18
49 50 3.291585 GAAATTGCTTCACACACGACTG 58.708 45.455 0.00 0.00 33.86 3.51
50 51 1.953559 ATTGCTTCACACACGACTGT 58.046 45.000 0.00 0.00 0.00 3.55
60 61 3.101019 CACGACTGTGTGCATACGA 57.899 52.632 9.18 0.00 41.34 3.43
61 62 1.629013 CACGACTGTGTGCATACGAT 58.371 50.000 9.18 0.00 41.34 3.73
62 63 1.992667 CACGACTGTGTGCATACGATT 59.007 47.619 9.18 0.00 41.34 3.34
63 64 2.411748 CACGACTGTGTGCATACGATTT 59.588 45.455 9.18 0.00 41.34 2.17
64 65 2.411748 ACGACTGTGTGCATACGATTTG 59.588 45.455 9.18 2.38 0.00 2.32
65 66 2.411748 CGACTGTGTGCATACGATTTGT 59.588 45.455 9.18 2.90 0.00 2.83
66 67 3.610677 CGACTGTGTGCATACGATTTGTA 59.389 43.478 9.18 0.00 37.49 2.41
67 68 4.490319 CGACTGTGTGCATACGATTTGTAC 60.490 45.833 9.18 0.00 35.44 2.90
68 69 3.366724 ACTGTGTGCATACGATTTGTACG 59.633 43.478 9.18 0.00 35.44 3.67
69 70 3.576648 TGTGTGCATACGATTTGTACGA 58.423 40.909 9.18 0.00 35.44 3.43
70 71 4.177783 TGTGTGCATACGATTTGTACGAT 58.822 39.130 9.18 0.00 35.44 3.73
71 72 4.266739 TGTGTGCATACGATTTGTACGATC 59.733 41.667 9.18 0.00 35.44 3.69
72 73 3.799963 TGTGCATACGATTTGTACGATCC 59.200 43.478 0.00 0.00 35.44 3.36
73 74 4.049186 GTGCATACGATTTGTACGATCCT 58.951 43.478 0.00 0.00 35.44 3.24
74 75 4.506654 GTGCATACGATTTGTACGATCCTT 59.493 41.667 0.00 0.00 35.44 3.36
75 76 4.743151 TGCATACGATTTGTACGATCCTTC 59.257 41.667 0.00 0.00 35.44 3.46
76 77 4.150098 GCATACGATTTGTACGATCCTTCC 59.850 45.833 0.00 0.00 35.44 3.46
77 78 5.529791 CATACGATTTGTACGATCCTTCCT 58.470 41.667 0.00 0.00 35.44 3.36
78 79 3.782046 ACGATTTGTACGATCCTTCCTG 58.218 45.455 0.00 0.00 34.70 3.86
79 80 3.123804 CGATTTGTACGATCCTTCCTGG 58.876 50.000 0.00 0.00 37.10 4.45
80 81 2.396590 TTTGTACGATCCTTCCTGGC 57.603 50.000 0.00 0.00 35.26 4.85
81 82 0.539986 TTGTACGATCCTTCCTGGCC 59.460 55.000 0.00 0.00 35.26 5.36
82 83 1.067582 GTACGATCCTTCCTGGCCG 59.932 63.158 0.00 0.00 37.53 6.13
83 84 1.380785 TACGATCCTTCCTGGCCGT 60.381 57.895 0.00 0.00 43.34 5.68
84 85 1.672854 TACGATCCTTCCTGGCCGTG 61.673 60.000 0.00 0.00 41.91 4.94
85 86 2.514824 GATCCTTCCTGGCCGTGC 60.515 66.667 0.00 0.00 35.26 5.34
95 96 3.075005 GGCCGTGCCTAGAGTCCA 61.075 66.667 7.58 0.00 46.69 4.02
96 97 2.496817 GCCGTGCCTAGAGTCCAG 59.503 66.667 0.00 0.00 0.00 3.86
97 98 2.352032 GCCGTGCCTAGAGTCCAGT 61.352 63.158 0.00 0.00 0.00 4.00
98 99 1.810532 CCGTGCCTAGAGTCCAGTC 59.189 63.158 0.00 0.00 0.00 3.51
99 100 1.668101 CCGTGCCTAGAGTCCAGTCC 61.668 65.000 0.00 0.00 0.00 3.85
100 101 0.965866 CGTGCCTAGAGTCCAGTCCA 60.966 60.000 0.00 0.00 0.00 4.02
101 102 1.267121 GTGCCTAGAGTCCAGTCCAA 58.733 55.000 0.00 0.00 0.00 3.53
102 103 1.623811 GTGCCTAGAGTCCAGTCCAAA 59.376 52.381 0.00 0.00 0.00 3.28
103 104 1.623811 TGCCTAGAGTCCAGTCCAAAC 59.376 52.381 0.00 0.00 0.00 2.93
104 105 1.066071 GCCTAGAGTCCAGTCCAAACC 60.066 57.143 0.00 0.00 0.00 3.27
105 106 1.555533 CCTAGAGTCCAGTCCAAACCC 59.444 57.143 0.00 0.00 0.00 4.11
106 107 2.257207 CTAGAGTCCAGTCCAAACCCA 58.743 52.381 0.00 0.00 0.00 4.51
107 108 1.518367 AGAGTCCAGTCCAAACCCAA 58.482 50.000 0.00 0.00 0.00 4.12
108 109 1.850345 AGAGTCCAGTCCAAACCCAAA 59.150 47.619 0.00 0.00 0.00 3.28
109 110 1.954382 GAGTCCAGTCCAAACCCAAAC 59.046 52.381 0.00 0.00 0.00 2.93
110 111 1.037493 GTCCAGTCCAAACCCAAACC 58.963 55.000 0.00 0.00 0.00 3.27
111 112 0.105913 TCCAGTCCAAACCCAAACCC 60.106 55.000 0.00 0.00 0.00 4.11
112 113 1.460273 CCAGTCCAAACCCAAACCCG 61.460 60.000 0.00 0.00 0.00 5.28
113 114 0.753848 CAGTCCAAACCCAAACCCGT 60.754 55.000 0.00 0.00 0.00 5.28
114 115 0.466739 AGTCCAAACCCAAACCCGTC 60.467 55.000 0.00 0.00 0.00 4.79
115 116 1.526455 TCCAAACCCAAACCCGTCG 60.526 57.895 0.00 0.00 0.00 5.12
116 117 1.824760 CCAAACCCAAACCCGTCGT 60.825 57.895 0.00 0.00 0.00 4.34
117 118 1.357334 CAAACCCAAACCCGTCGTG 59.643 57.895 0.00 0.00 0.00 4.35
118 119 2.483197 AAACCCAAACCCGTCGTGC 61.483 57.895 0.00 0.00 0.00 5.34
121 122 4.007940 CCAAACCCGTCGTGCGTG 62.008 66.667 0.00 0.00 39.32 5.34
122 123 4.659874 CAAACCCGTCGTGCGTGC 62.660 66.667 0.00 0.00 39.32 5.34
124 125 4.980805 AACCCGTCGTGCGTGCAT 62.981 61.111 0.00 0.00 39.32 3.96
128 129 4.489795 CGTCGTGCGTGCATGCTC 62.490 66.667 29.83 24.98 35.36 4.26
147 148 2.430751 CTGCAGCGCTGTCACGTA 60.431 61.111 35.80 15.76 34.88 3.57
148 149 1.807165 CTGCAGCGCTGTCACGTAT 60.807 57.895 35.80 0.00 34.88 3.06
149 150 2.017458 CTGCAGCGCTGTCACGTATG 62.017 60.000 35.80 18.18 34.88 2.39
150 151 1.805539 GCAGCGCTGTCACGTATGA 60.806 57.895 35.80 0.00 34.88 2.15
151 152 1.148157 GCAGCGCTGTCACGTATGAT 61.148 55.000 35.80 0.00 37.14 2.45
152 153 0.848942 CAGCGCTGTCACGTATGATC 59.151 55.000 29.24 0.00 37.14 2.92
153 154 0.455815 AGCGCTGTCACGTATGATCA 59.544 50.000 10.39 0.00 37.14 2.92
154 155 1.067669 AGCGCTGTCACGTATGATCAT 59.932 47.619 10.39 13.81 37.14 2.45
155 156 2.293399 AGCGCTGTCACGTATGATCATA 59.707 45.455 10.39 11.49 37.14 2.15
156 157 2.405357 GCGCTGTCACGTATGATCATAC 59.595 50.000 28.73 28.73 40.09 2.39
157 158 3.628017 CGCTGTCACGTATGATCATACA 58.372 45.455 34.06 21.87 42.82 2.29
158 159 3.665871 CGCTGTCACGTATGATCATACAG 59.334 47.826 34.06 28.37 42.82 2.74
159 160 4.611943 GCTGTCACGTATGATCATACAGT 58.388 43.478 34.06 29.07 42.82 3.55
160 161 4.677378 GCTGTCACGTATGATCATACAGTC 59.323 45.833 34.06 25.15 42.82 3.51
161 162 5.733373 GCTGTCACGTATGATCATACAGTCA 60.733 44.000 34.06 27.26 42.82 3.41
162 163 6.391227 TGTCACGTATGATCATACAGTCAT 57.609 37.500 34.06 17.52 42.82 3.06
163 164 6.438763 TGTCACGTATGATCATACAGTCATC 58.561 40.000 34.06 23.86 42.82 2.92
164 165 5.859114 GTCACGTATGATCATACAGTCATCC 59.141 44.000 34.06 19.19 42.82 3.51
165 166 4.853743 CACGTATGATCATACAGTCATCCG 59.146 45.833 34.06 23.75 42.82 4.18
166 167 4.760204 ACGTATGATCATACAGTCATCCGA 59.240 41.667 34.06 4.71 42.82 4.55
167 168 5.416013 ACGTATGATCATACAGTCATCCGAT 59.584 40.000 34.06 13.51 42.82 4.18
168 169 5.741040 CGTATGATCATACAGTCATCCGATG 59.259 44.000 34.06 16.60 42.82 3.84
169 170 3.917988 TGATCATACAGTCATCCGATGC 58.082 45.455 3.25 0.00 0.00 3.91
170 171 3.321682 TGATCATACAGTCATCCGATGCA 59.678 43.478 3.25 0.00 0.00 3.96
171 172 3.817709 TCATACAGTCATCCGATGCAA 57.182 42.857 3.25 0.00 0.00 4.08
172 173 4.135747 TCATACAGTCATCCGATGCAAA 57.864 40.909 3.25 0.00 0.00 3.68
173 174 4.707105 TCATACAGTCATCCGATGCAAAT 58.293 39.130 3.25 0.00 0.00 2.32
174 175 4.512571 TCATACAGTCATCCGATGCAAATG 59.487 41.667 3.25 0.22 0.00 2.32
175 176 2.715046 ACAGTCATCCGATGCAAATGT 58.285 42.857 3.25 0.83 0.00 2.71
176 177 2.421073 ACAGTCATCCGATGCAAATGTG 59.579 45.455 3.25 0.00 0.00 3.21
177 178 2.421073 CAGTCATCCGATGCAAATGTGT 59.579 45.455 3.25 0.00 0.00 3.72
178 179 2.679837 AGTCATCCGATGCAAATGTGTC 59.320 45.455 3.25 0.00 0.00 3.67
179 180 1.665169 TCATCCGATGCAAATGTGTCG 59.335 47.619 3.25 0.00 0.00 4.35
180 181 1.398041 CATCCGATGCAAATGTGTCGT 59.602 47.619 4.61 0.00 32.55 4.34
181 182 2.371910 TCCGATGCAAATGTGTCGTA 57.628 45.000 4.61 0.00 32.55 3.43
182 183 2.899976 TCCGATGCAAATGTGTCGTAT 58.100 42.857 4.61 0.00 32.55 3.06
183 184 2.607180 TCCGATGCAAATGTGTCGTATG 59.393 45.455 4.61 0.00 32.55 2.39
184 185 2.351418 CCGATGCAAATGTGTCGTATGT 59.649 45.455 4.61 0.00 32.55 2.29
185 186 3.553917 CCGATGCAAATGTGTCGTATGTA 59.446 43.478 4.61 0.00 32.55 2.29
186 187 4.211164 CCGATGCAAATGTGTCGTATGTAT 59.789 41.667 4.61 0.00 32.55 2.29
187 188 5.404066 CCGATGCAAATGTGTCGTATGTATA 59.596 40.000 4.61 0.00 32.55 1.47
188 189 6.399986 CCGATGCAAATGTGTCGTATGTATAG 60.400 42.308 4.61 0.00 32.55 1.31
189 190 5.651172 TGCAAATGTGTCGTATGTATAGC 57.349 39.130 0.00 0.00 0.00 2.97
190 191 5.112686 TGCAAATGTGTCGTATGTATAGCA 58.887 37.500 0.00 0.00 0.00 3.49
191 192 5.234116 TGCAAATGTGTCGTATGTATAGCAG 59.766 40.000 0.00 0.00 0.00 4.24
192 193 5.670097 CAAATGTGTCGTATGTATAGCAGC 58.330 41.667 0.00 0.00 0.00 5.25
193 194 2.994849 TGTGTCGTATGTATAGCAGCG 58.005 47.619 0.00 0.00 0.00 5.18
194 195 1.714460 GTGTCGTATGTATAGCAGCGC 59.286 52.381 0.00 0.00 32.24 5.92
195 196 1.335597 TGTCGTATGTATAGCAGCGCC 60.336 52.381 2.29 0.00 32.24 6.53
196 197 0.109919 TCGTATGTATAGCAGCGCCG 60.110 55.000 2.29 0.00 32.24 6.46
197 198 0.386858 CGTATGTATAGCAGCGCCGT 60.387 55.000 2.29 0.00 0.00 5.68
198 199 1.135888 CGTATGTATAGCAGCGCCGTA 60.136 52.381 2.29 0.00 0.00 4.02
199 200 2.516923 GTATGTATAGCAGCGCCGTAG 58.483 52.381 2.29 0.00 0.00 3.51
200 201 0.959553 ATGTATAGCAGCGCCGTAGT 59.040 50.000 2.29 0.00 0.00 2.73
201 202 1.596603 TGTATAGCAGCGCCGTAGTA 58.403 50.000 2.29 0.00 0.00 1.82
202 203 1.534163 TGTATAGCAGCGCCGTAGTAG 59.466 52.381 2.29 0.00 0.00 2.57
203 204 1.534595 GTATAGCAGCGCCGTAGTAGT 59.465 52.381 2.29 0.00 0.00 2.73
204 205 1.888215 ATAGCAGCGCCGTAGTAGTA 58.112 50.000 2.29 0.00 0.00 1.82
205 206 1.667236 TAGCAGCGCCGTAGTAGTAA 58.333 50.000 2.29 0.00 0.00 2.24
206 207 1.030457 AGCAGCGCCGTAGTAGTAAT 58.970 50.000 2.29 0.00 0.00 1.89
207 208 2.224606 AGCAGCGCCGTAGTAGTAATA 58.775 47.619 2.29 0.00 0.00 0.98
208 209 2.031333 AGCAGCGCCGTAGTAGTAATAC 60.031 50.000 2.29 0.00 0.00 1.89
209 210 2.031333 GCAGCGCCGTAGTAGTAATACT 60.031 50.000 2.29 8.10 0.00 2.12
210 211 3.808095 CAGCGCCGTAGTAGTAATACTC 58.192 50.000 6.05 0.00 0.00 2.59
211 212 3.497640 CAGCGCCGTAGTAGTAATACTCT 59.502 47.826 6.05 0.00 0.00 3.24
212 213 3.497640 AGCGCCGTAGTAGTAATACTCTG 59.502 47.826 6.05 0.70 0.00 3.35
213 214 3.808095 CGCCGTAGTAGTAATACTCTGC 58.192 50.000 6.05 7.26 0.00 4.26
214 215 3.364764 CGCCGTAGTAGTAATACTCTGCC 60.365 52.174 6.05 0.00 0.00 4.85
215 216 3.364764 GCCGTAGTAGTAATACTCTGCCG 60.365 52.174 6.05 5.57 0.00 5.69
216 217 3.364764 CCGTAGTAGTAATACTCTGCCGC 60.365 52.174 6.05 0.00 0.00 6.53
217 218 3.364764 CGTAGTAGTAATACTCTGCCGCC 60.365 52.174 6.05 0.00 0.00 6.13
218 219 1.607628 AGTAGTAATACTCTGCCGCCG 59.392 52.381 0.00 0.00 0.00 6.46
219 220 0.313043 TAGTAATACTCTGCCGCCGC 59.687 55.000 0.00 0.00 0.00 6.53
220 221 1.227147 GTAATACTCTGCCGCCGCA 60.227 57.895 0.00 0.00 44.78 5.69
221 222 0.600255 GTAATACTCTGCCGCCGCAT 60.600 55.000 0.00 0.00 46.11 4.73
222 223 0.599991 TAATACTCTGCCGCCGCATG 60.600 55.000 0.00 0.00 46.11 4.06
231 232 4.170062 CGCCGCATGCAGGAACAG 62.170 66.667 26.00 13.11 41.33 3.16
232 233 2.747460 GCCGCATGCAGGAACAGA 60.747 61.111 26.00 0.00 40.77 3.41
233 234 2.334946 GCCGCATGCAGGAACAGAA 61.335 57.895 26.00 0.00 40.77 3.02
234 235 1.503542 CCGCATGCAGGAACAGAAC 59.496 57.895 19.57 0.00 0.00 3.01
235 236 0.957395 CCGCATGCAGGAACAGAACT 60.957 55.000 19.57 0.00 0.00 3.01
236 237 0.445436 CGCATGCAGGAACAGAACTC 59.555 55.000 19.57 0.00 0.00 3.01
237 238 0.807496 GCATGCAGGAACAGAACTCC 59.193 55.000 14.21 0.00 0.00 3.85
238 239 1.612726 GCATGCAGGAACAGAACTCCT 60.613 52.381 14.21 0.00 44.53 3.69
239 240 2.355108 GCATGCAGGAACAGAACTCCTA 60.355 50.000 14.21 0.00 41.61 2.94
240 241 3.265791 CATGCAGGAACAGAACTCCTAC 58.734 50.000 0.00 0.00 41.61 3.18
241 242 2.325484 TGCAGGAACAGAACTCCTACA 58.675 47.619 0.00 0.00 41.61 2.74
242 243 2.300152 TGCAGGAACAGAACTCCTACAG 59.700 50.000 0.00 0.00 41.61 2.74
243 244 2.563179 GCAGGAACAGAACTCCTACAGA 59.437 50.000 0.00 0.00 41.61 3.41
254 255 3.386613 CTCCTACAGAGTTACGACACG 57.613 52.381 0.00 0.00 37.87 4.49
255 256 2.998670 CTCCTACAGAGTTACGACACGA 59.001 50.000 0.00 0.00 37.87 4.35
256 257 2.738846 TCCTACAGAGTTACGACACGAC 59.261 50.000 0.00 0.00 0.00 4.34
257 258 2.740981 CCTACAGAGTTACGACACGACT 59.259 50.000 0.00 0.00 0.00 4.18
258 259 3.928992 CCTACAGAGTTACGACACGACTA 59.071 47.826 0.00 0.00 0.00 2.59
259 260 3.802722 ACAGAGTTACGACACGACTAC 57.197 47.619 0.00 0.00 0.00 2.73
260 261 3.133691 ACAGAGTTACGACACGACTACA 58.866 45.455 0.00 0.00 0.00 2.74
261 262 3.750130 ACAGAGTTACGACACGACTACAT 59.250 43.478 0.00 0.00 0.00 2.29
262 263 4.089341 CAGAGTTACGACACGACTACATG 58.911 47.826 0.00 0.00 0.00 3.21
263 264 3.750130 AGAGTTACGACACGACTACATGT 59.250 43.478 2.69 2.69 0.00 3.21
264 265 4.214971 AGAGTTACGACACGACTACATGTT 59.785 41.667 2.30 0.00 0.00 2.71
265 266 4.863491 AGTTACGACACGACTACATGTTT 58.137 39.130 2.30 0.00 0.00 2.83
266 267 4.678287 AGTTACGACACGACTACATGTTTG 59.322 41.667 2.30 0.00 0.00 2.93
267 268 1.790623 ACGACACGACTACATGTTTGC 59.209 47.619 2.30 0.00 0.00 3.68
268 269 1.790043 CGACACGACTACATGTTTGCA 59.210 47.619 2.30 0.00 0.00 4.08
269 270 2.411748 CGACACGACTACATGTTTGCAT 59.588 45.455 2.30 0.00 35.32 3.96
282 283 5.633830 ATGTTTGCATGAACTACAAGGAG 57.366 39.130 0.00 0.00 33.37 3.69
283 284 4.460263 TGTTTGCATGAACTACAAGGAGT 58.540 39.130 0.00 0.00 0.00 3.85
284 285 5.616270 TGTTTGCATGAACTACAAGGAGTA 58.384 37.500 0.00 0.00 0.00 2.59
285 286 5.468746 TGTTTGCATGAACTACAAGGAGTAC 59.531 40.000 0.00 0.00 0.00 2.73
286 287 5.483685 TTGCATGAACTACAAGGAGTACT 57.516 39.130 0.00 0.00 0.00 2.73
287 288 5.073311 TGCATGAACTACAAGGAGTACTC 57.927 43.478 14.87 14.87 0.00 2.59
288 289 4.526650 TGCATGAACTACAAGGAGTACTCA 59.473 41.667 23.91 2.46 0.00 3.41
289 290 5.011635 TGCATGAACTACAAGGAGTACTCAA 59.988 40.000 23.91 3.49 0.00 3.02
290 291 5.348997 GCATGAACTACAAGGAGTACTCAAC 59.651 44.000 23.91 8.06 0.00 3.18
291 292 5.464030 TGAACTACAAGGAGTACTCAACC 57.536 43.478 23.91 8.09 0.00 3.77
292 293 4.282703 TGAACTACAAGGAGTACTCAACCC 59.717 45.833 23.91 7.71 0.00 4.11
293 294 4.129317 ACTACAAGGAGTACTCAACCCT 57.871 45.455 23.91 10.02 32.07 4.34
294 295 4.087907 ACTACAAGGAGTACTCAACCCTC 58.912 47.826 23.91 5.87 30.84 4.30
295 296 2.258109 ACAAGGAGTACTCAACCCTCC 58.742 52.381 23.91 6.09 44.22 4.30
297 298 2.973148 GGAGTACTCAACCCTCCGT 58.027 57.895 23.91 0.00 35.79 4.69
298 299 1.264295 GGAGTACTCAACCCTCCGTT 58.736 55.000 23.91 0.00 35.79 4.44
299 300 1.622312 GGAGTACTCAACCCTCCGTTT 59.378 52.381 23.91 0.00 35.79 3.60
300 301 2.612221 GGAGTACTCAACCCTCCGTTTG 60.612 54.545 23.91 0.00 35.79 2.93
301 302 1.346722 AGTACTCAACCCTCCGTTTGG 59.653 52.381 0.00 0.00 29.93 3.28
302 303 1.345415 GTACTCAACCCTCCGTTTGGA 59.655 52.381 0.00 0.00 43.88 3.53
303 304 0.841289 ACTCAACCCTCCGTTTGGAA 59.159 50.000 0.00 0.00 45.87 3.53
304 305 1.423921 ACTCAACCCTCCGTTTGGAAT 59.576 47.619 0.00 0.00 45.87 3.01
305 306 2.158519 ACTCAACCCTCCGTTTGGAATT 60.159 45.455 0.00 0.00 45.87 2.17
306 307 3.073356 ACTCAACCCTCCGTTTGGAATTA 59.927 43.478 0.00 0.00 45.87 1.40
307 308 3.414269 TCAACCCTCCGTTTGGAATTAC 58.586 45.455 0.00 0.00 45.87 1.89
308 309 3.073356 TCAACCCTCCGTTTGGAATTACT 59.927 43.478 0.00 0.00 45.87 2.24
309 310 3.801307 ACCCTCCGTTTGGAATTACTT 57.199 42.857 0.00 0.00 45.87 2.24
310 311 3.418047 ACCCTCCGTTTGGAATTACTTG 58.582 45.455 0.00 0.00 45.87 3.16
311 312 3.181437 ACCCTCCGTTTGGAATTACTTGT 60.181 43.478 0.00 0.00 45.87 3.16
312 313 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
313 314 4.324267 CCTCCGTTTGGAATTACTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
314 315 4.392138 CCTCCGTTTGGAATTACTTGTCTC 59.608 45.833 0.00 0.00 45.87 3.36
315 316 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
316 317 3.991773 CCGTTTGGAATTACTTGTCTCGA 59.008 43.478 0.00 0.00 37.49 4.04
317 318 4.449743 CCGTTTGGAATTACTTGTCTCGAA 59.550 41.667 0.00 0.00 37.49 3.71
318 319 5.049954 CCGTTTGGAATTACTTGTCTCGAAA 60.050 40.000 0.00 0.00 37.49 3.46
319 320 6.423862 CGTTTGGAATTACTTGTCTCGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
320 321 7.075741 CGTTTGGAATTACTTGTCTCGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
321 322 7.059488 CGTTTGGAATTACTTGTCTCGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
322 323 6.494893 TGGAATTACTTGTCTCGAAAATGG 57.505 37.500 0.00 0.00 0.00 3.16
323 324 6.234920 TGGAATTACTTGTCTCGAAAATGGA 58.765 36.000 0.00 0.00 0.00 3.41
324 325 6.884295 TGGAATTACTTGTCTCGAAAATGGAT 59.116 34.615 0.00 0.00 0.00 3.41
325 326 7.148255 TGGAATTACTTGTCTCGAAAATGGATG 60.148 37.037 0.00 0.00 0.00 3.51
326 327 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
327 328 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
328 329 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
329 330 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
330 331 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
331 332 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
332 333 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
333 334 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
334 335 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
335 336 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
336 337 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
337 338 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
338 339 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
365 366 6.095432 ACATCTAGATACATCCACTTCTGC 57.905 41.667 4.54 0.00 0.00 4.26
366 367 4.837896 TCTAGATACATCCACTTCTGCG 57.162 45.455 0.00 0.00 0.00 5.18
367 368 4.461198 TCTAGATACATCCACTTCTGCGA 58.539 43.478 0.00 0.00 0.00 5.10
368 369 3.444703 AGATACATCCACTTCTGCGAC 57.555 47.619 0.00 0.00 0.00 5.19
369 370 2.760650 AGATACATCCACTTCTGCGACA 59.239 45.455 0.00 0.00 0.00 4.35
370 371 3.195610 AGATACATCCACTTCTGCGACAA 59.804 43.478 0.00 0.00 0.00 3.18
371 372 1.800805 ACATCCACTTCTGCGACAAG 58.199 50.000 0.00 0.00 0.00 3.16
372 373 1.070758 ACATCCACTTCTGCGACAAGT 59.929 47.619 0.00 0.00 34.24 3.16
373 374 2.299013 ACATCCACTTCTGCGACAAGTA 59.701 45.455 0.00 0.00 32.61 2.24
374 375 3.244078 ACATCCACTTCTGCGACAAGTAA 60.244 43.478 0.00 0.00 32.61 2.24
375 376 3.678056 TCCACTTCTGCGACAAGTAAT 57.322 42.857 0.00 0.00 32.61 1.89
376 377 4.002906 TCCACTTCTGCGACAAGTAATT 57.997 40.909 0.00 0.00 32.61 1.40
377 378 3.994392 TCCACTTCTGCGACAAGTAATTC 59.006 43.478 0.00 0.00 32.61 2.17
378 379 3.125316 CCACTTCTGCGACAAGTAATTCC 59.875 47.826 0.00 0.00 32.61 3.01
379 380 2.993899 ACTTCTGCGACAAGTAATTCCG 59.006 45.455 0.00 0.00 32.08 4.30
380 381 3.250744 CTTCTGCGACAAGTAATTCCGA 58.749 45.455 0.00 0.00 0.00 4.55
381 382 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
382 383 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
383 384 2.993899 CTGCGACAAGTAATTCCGAACT 59.006 45.455 0.00 0.00 0.00 3.01
384 385 2.734606 TGCGACAAGTAATTCCGAACTG 59.265 45.455 0.00 0.00 0.00 3.16
385 386 2.991190 GCGACAAGTAATTCCGAACTGA 59.009 45.455 0.00 0.00 0.00 3.41
386 387 3.060895 GCGACAAGTAATTCCGAACTGAG 59.939 47.826 0.00 0.00 0.00 3.35
387 388 3.612860 CGACAAGTAATTCCGAACTGAGG 59.387 47.826 0.00 0.00 0.00 3.86
388 389 3.933332 GACAAGTAATTCCGAACTGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
389 390 3.581332 ACAAGTAATTCCGAACTGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
390 391 4.184629 CAAGTAATTCCGAACTGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
391 392 3.442076 AGTAATTCCGAACTGAGGGAGT 58.558 45.455 0.00 0.00 35.94 3.85
392 393 4.607239 AGTAATTCCGAACTGAGGGAGTA 58.393 43.478 0.00 0.00 33.09 2.59
393 394 3.889520 AATTCCGAACTGAGGGAGTAC 57.110 47.619 0.00 0.00 33.09 2.73
394 395 2.297698 TTCCGAACTGAGGGAGTACA 57.702 50.000 0.00 0.00 33.09 2.90
395 396 2.297698 TCCGAACTGAGGGAGTACAA 57.702 50.000 0.00 0.00 33.09 2.41
396 397 2.168496 TCCGAACTGAGGGAGTACAAG 58.832 52.381 0.00 0.00 33.09 3.16
397 398 1.893801 CCGAACTGAGGGAGTACAAGT 59.106 52.381 0.00 0.00 33.09 3.16
398 399 2.352814 CCGAACTGAGGGAGTACAAGTG 60.353 54.545 0.00 0.00 33.09 3.16
399 400 2.557056 CGAACTGAGGGAGTACAAGTGA 59.443 50.000 0.00 0.00 33.09 3.41
449 454 4.612412 GCGTGGTCACCGGTGGAA 62.612 66.667 33.40 16.88 0.00 3.53
450 455 2.663852 CGTGGTCACCGGTGGAAC 60.664 66.667 33.40 24.30 0.00 3.62
451 456 2.506962 GTGGTCACCGGTGGAACA 59.493 61.111 33.40 24.54 39.98 3.18
452 457 1.597027 GTGGTCACCGGTGGAACAG 60.597 63.158 33.40 7.98 41.80 3.16
557 562 1.131638 TGAGCTTTGGGAGTGTCAGT 58.868 50.000 0.00 0.00 0.00 3.41
607 616 8.954350 CCCTCAATTATCTATCCATTCATTCAC 58.046 37.037 0.00 0.00 0.00 3.18
622 631 1.835494 TTCACTCAGTAGGGGACGAG 58.165 55.000 0.00 0.00 35.86 4.18
656 665 4.832608 GACCCCGGCGGCAGTTAG 62.833 72.222 23.20 5.38 33.26 2.34
675 684 3.691342 AGCAGAGTTACCGCGGCA 61.691 61.111 28.58 10.63 34.27 5.69
874 888 1.153208 TCTCTCGACCCTCGCCTAC 60.153 63.158 0.00 0.00 40.21 3.18
1323 1358 4.158394 TGCCAATCTTATCCTGTTTCTTGC 59.842 41.667 0.00 0.00 0.00 4.01
1571 1612 1.084289 GTCGCCGCCATTTCTTTACT 58.916 50.000 0.00 0.00 0.00 2.24
1849 1893 2.401766 CCATTGTCTCACCAGCGCC 61.402 63.158 2.29 0.00 0.00 6.53
1860 1904 1.810030 CCAGCGCCGTTCTAACTCC 60.810 63.158 2.29 0.00 0.00 3.85
2189 2233 2.812011 ACTACAAACCGAGCATTCCAAC 59.188 45.455 0.00 0.00 0.00 3.77
2227 2279 2.947118 TTCATAGTAGCACGCGCCGG 62.947 60.000 5.73 0.00 39.83 6.13
2331 2400 4.275196 ACCATGATGCGAATCATTCAAGAG 59.725 41.667 16.67 4.26 39.10 2.85
2411 2501 0.820891 CATCAGTATGGGGGCACAGC 60.821 60.000 0.00 0.00 36.16 4.40
2491 2585 5.349061 AAAGATTTTGGGGATCTGAATGC 57.651 39.130 0.00 0.00 34.24 3.56
2554 2648 3.189287 AGCATAAAAGGACTTGTTGCTCG 59.811 43.478 9.48 0.00 34.02 5.03
2592 2694 3.692257 AAGTGTCTTGGTCATCTCCAG 57.308 47.619 0.00 0.00 38.80 3.86
2595 2697 2.300152 GTGTCTTGGTCATCTCCAGTCA 59.700 50.000 0.00 0.00 38.80 3.41
2611 2717 0.861185 GTCACCGGTTAACGTGGTTC 59.139 55.000 16.14 10.17 42.24 3.62
2624 2730 2.029290 ACGTGGTTCCTGTCACTGATAC 60.029 50.000 0.00 0.00 0.00 2.24
2626 2732 3.554129 CGTGGTTCCTGTCACTGATACAA 60.554 47.826 0.00 0.00 0.00 2.41
2628 2734 5.623596 CGTGGTTCCTGTCACTGATACAATA 60.624 44.000 0.00 0.00 0.00 1.90
2632 2738 6.926272 GGTTCCTGTCACTGATACAATAGATC 59.074 42.308 0.00 0.00 0.00 2.75
2648 2754 0.169672 GATCTGCATGTGTGGTGCAC 59.830 55.000 8.80 8.80 46.76 4.57
2649 2755 0.251033 ATCTGCATGTGTGGTGCACT 60.251 50.000 17.98 0.00 46.76 4.40
2650 2756 0.396060 TCTGCATGTGTGGTGCACTA 59.604 50.000 17.98 8.10 46.76 2.74
2651 2757 1.202746 TCTGCATGTGTGGTGCACTAA 60.203 47.619 17.98 2.36 46.76 2.24
2653 2759 1.336440 TGCATGTGTGGTGCACTAAAC 59.664 47.619 16.19 16.19 46.76 2.01
2654 2760 3.267210 TGCATGTGTGGTGCACTAAACA 61.267 45.455 26.19 26.19 46.76 2.83
2655 2761 4.558871 TGCATGTGTGGTGCACTAAACAT 61.559 43.478 28.03 28.03 46.76 2.71
2656 2762 6.336521 TGCATGTGTGGTGCACTAAACATC 62.337 45.833 30.12 24.05 46.76 3.06
2660 2856 2.154462 GTGGTGCACTAAACATCTGCT 58.846 47.619 17.98 0.00 0.00 4.24
2673 2869 7.880195 ACTAAACATCTGCTTTAGATCACTTGT 59.120 33.333 8.84 0.00 44.34 3.16
2675 2871 7.602517 AACATCTGCTTTAGATCACTTGTAC 57.397 36.000 0.00 0.00 44.34 2.90
2711 2909 4.453136 CCATGAAAAGCAAATTTGTGAGGG 59.547 41.667 19.03 1.50 0.00 4.30
2717 2915 1.338105 GCAAATTTGTGAGGGGGCTTC 60.338 52.381 19.03 0.00 0.00 3.86
2718 2916 1.276138 CAAATTTGTGAGGGGGCTTCC 59.724 52.381 10.15 0.00 0.00 3.46
2762 2961 5.767665 AGTGTCACATTGCAAATTAGTGGTA 59.232 36.000 18.36 9.54 0.00 3.25
2763 2962 5.856455 GTGTCACATTGCAAATTAGTGGTAC 59.144 40.000 18.36 14.78 0.00 3.34
2785 2987 2.813754 TGGTGCTGAATGCTAACTTGTC 59.186 45.455 0.00 0.00 43.37 3.18
2812 3016 2.919494 GCGGTTGCAGGGTTCAAGG 61.919 63.158 0.00 0.00 42.15 3.61
3045 3249 2.880890 CTGCTTGCCTCTAGTGTTTGTT 59.119 45.455 0.00 0.00 0.00 2.83
3119 3331 2.633481 GACCAACTGGACAGAAGGTAGT 59.367 50.000 16.18 2.58 38.50 2.73
3134 3346 1.672145 GGTAGTTCGAGGTGGAAGTGC 60.672 57.143 0.00 0.00 33.01 4.40
3146 3358 1.004918 GAAGTGCTGTACCGCCTGT 60.005 57.895 6.82 0.00 0.00 4.00
3147 3359 1.004918 AAGTGCTGTACCGCCTGTC 60.005 57.895 6.82 0.00 0.00 3.51
3168 3384 4.948847 TCACTATATGACTGCGCATTTCT 58.051 39.130 12.24 0.00 29.99 2.52
3175 3391 1.154093 CTGCGCATTTCTGTGGCTG 60.154 57.895 12.24 0.00 33.34 4.85
3191 3407 1.092345 GCTGATCTGCTCCGGAAACC 61.092 60.000 16.60 0.00 0.00 3.27
3193 3409 0.537188 TGATCTGCTCCGGAAACCTC 59.463 55.000 5.23 0.00 0.00 3.85
3196 3412 0.541998 TCTGCTCCGGAAACCTCTGA 60.542 55.000 5.23 0.00 0.00 3.27
3201 3417 0.530744 TCCGGAAACCTCTGATCACG 59.469 55.000 0.00 0.00 0.00 4.35
3202 3418 0.530744 CCGGAAACCTCTGATCACGA 59.469 55.000 0.00 0.00 0.00 4.35
3203 3419 1.137086 CCGGAAACCTCTGATCACGAT 59.863 52.381 0.00 0.00 0.00 3.73
3227 3443 4.702826 GCAGTTCGCGCGACACAC 62.703 66.667 35.02 27.61 0.00 3.82
3230 3446 4.059459 GTTCGCGCGACACACCAG 62.059 66.667 35.02 0.00 0.00 4.00
3231 3447 4.273257 TTCGCGCGACACACCAGA 62.273 61.111 35.02 12.96 0.00 3.86
3232 3448 4.994201 TCGCGCGACACACCAGAC 62.994 66.667 31.40 0.00 0.00 3.51
3239 3455 1.525077 GACACACCAGACGCCCAAA 60.525 57.895 0.00 0.00 0.00 3.28
3240 3456 0.889186 GACACACCAGACGCCCAAAT 60.889 55.000 0.00 0.00 0.00 2.32
3241 3457 1.172180 ACACACCAGACGCCCAAATG 61.172 55.000 0.00 0.00 0.00 2.32
3242 3458 2.268076 ACACCAGACGCCCAAATGC 61.268 57.895 0.00 0.00 0.00 3.56
3243 3459 2.676471 ACCAGACGCCCAAATGCC 60.676 61.111 0.00 0.00 0.00 4.40
3245 3461 3.814268 CAGACGCCCAAATGCCGG 61.814 66.667 0.00 0.00 0.00 6.13
3277 3496 3.374402 CTCCTCGCACGGACAGGT 61.374 66.667 0.00 0.00 0.00 4.00
3307 3526 2.434185 ACATGCGTGCGATTCGGT 60.434 55.556 5.64 0.00 0.00 4.69
3314 3533 0.718904 CGTGCGATTCGGTGAAATGA 59.281 50.000 8.34 0.00 0.00 2.57
3317 3536 1.999735 TGCGATTCGGTGAAATGAGTC 59.000 47.619 8.34 0.00 0.00 3.36
3318 3537 2.271800 GCGATTCGGTGAAATGAGTCT 58.728 47.619 8.34 0.00 0.00 3.24
3319 3538 2.029728 GCGATTCGGTGAAATGAGTCTG 59.970 50.000 8.34 0.00 0.00 3.51
3320 3539 3.511699 CGATTCGGTGAAATGAGTCTGA 58.488 45.455 0.00 0.00 0.00 3.27
3321 3540 4.115516 CGATTCGGTGAAATGAGTCTGAT 58.884 43.478 0.00 0.00 0.00 2.90
3322 3541 4.026228 CGATTCGGTGAAATGAGTCTGATG 60.026 45.833 0.00 0.00 0.00 3.07
3323 3542 3.251479 TCGGTGAAATGAGTCTGATGG 57.749 47.619 0.00 0.00 0.00 3.51
3324 3543 2.831526 TCGGTGAAATGAGTCTGATGGA 59.168 45.455 0.00 0.00 0.00 3.41
3325 3544 3.118992 TCGGTGAAATGAGTCTGATGGAG 60.119 47.826 0.00 0.00 0.00 3.86
3326 3545 2.941720 GGTGAAATGAGTCTGATGGAGC 59.058 50.000 0.00 0.00 0.00 4.70
3327 3546 2.606725 GTGAAATGAGTCTGATGGAGCG 59.393 50.000 0.00 0.00 0.00 5.03
3332 3551 1.966354 TGAGTCTGATGGAGCGCATAT 59.034 47.619 11.47 0.00 0.00 1.78
3333 3552 2.288640 TGAGTCTGATGGAGCGCATATG 60.289 50.000 11.47 0.00 0.00 1.78
3642 3867 2.242965 TCCTGTAGGTTCAGATCCCGTA 59.757 50.000 0.00 0.00 37.61 4.02
3937 4162 8.158169 TCCATGAATCTATTGATAAAGCACAC 57.842 34.615 0.00 0.00 31.70 3.82
4010 4235 2.094078 CCACCAAATTGCCCACATAGTG 60.094 50.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.937201 ACTATACCATGCGATGAACTCA 57.063 40.909 0.00 0.00 0.00 3.41
1 2 6.015027 ACTACTATACCATGCGATGAACTC 57.985 41.667 0.00 0.00 0.00 3.01
2 3 7.368833 GTTACTACTATACCATGCGATGAACT 58.631 38.462 0.00 0.00 0.00 3.01
3 4 6.304922 CGTTACTACTATACCATGCGATGAAC 59.695 42.308 0.00 0.00 0.00 3.18
5 6 5.702209 TCGTTACTACTATACCATGCGATGA 59.298 40.000 0.00 0.00 0.00 2.92
6 7 5.934921 TCGTTACTACTATACCATGCGATG 58.065 41.667 0.00 0.00 0.00 3.84
7 8 6.564709 TTCGTTACTACTATACCATGCGAT 57.435 37.500 0.00 0.00 0.00 4.58
8 9 6.375945 TTTCGTTACTACTATACCATGCGA 57.624 37.500 0.00 0.00 0.00 5.10
9 10 7.499046 CAATTTCGTTACTACTATACCATGCG 58.501 38.462 0.00 0.00 0.00 4.73
10 11 7.170998 AGCAATTTCGTTACTACTATACCATGC 59.829 37.037 0.00 0.00 0.00 4.06
11 12 8.589335 AGCAATTTCGTTACTACTATACCATG 57.411 34.615 0.00 0.00 0.00 3.66
12 13 9.257651 GAAGCAATTTCGTTACTACTATACCAT 57.742 33.333 0.00 0.00 0.00 3.55
13 14 8.252417 TGAAGCAATTTCGTTACTACTATACCA 58.748 33.333 0.00 0.00 38.71 3.25
14 15 8.538039 GTGAAGCAATTTCGTTACTACTATACC 58.462 37.037 0.00 0.00 38.71 2.73
15 16 9.079833 TGTGAAGCAATTTCGTTACTACTATAC 57.920 33.333 0.00 0.00 38.71 1.47
16 17 9.079833 GTGTGAAGCAATTTCGTTACTACTATA 57.920 33.333 0.00 0.00 38.71 1.31
17 18 7.601130 TGTGTGAAGCAATTTCGTTACTACTAT 59.399 33.333 0.00 0.00 38.71 2.12
18 19 6.924612 TGTGTGAAGCAATTTCGTTACTACTA 59.075 34.615 0.00 0.00 38.71 1.82
19 20 5.756347 TGTGTGAAGCAATTTCGTTACTACT 59.244 36.000 0.00 0.00 38.71 2.57
20 21 5.844396 GTGTGTGAAGCAATTTCGTTACTAC 59.156 40.000 0.00 0.00 38.71 2.73
21 22 5.332732 CGTGTGTGAAGCAATTTCGTTACTA 60.333 40.000 0.00 0.00 38.71 1.82
22 23 4.551990 CGTGTGTGAAGCAATTTCGTTACT 60.552 41.667 0.00 0.00 38.71 2.24
23 24 3.657625 CGTGTGTGAAGCAATTTCGTTAC 59.342 43.478 0.00 0.00 38.71 2.50
24 25 3.556365 TCGTGTGTGAAGCAATTTCGTTA 59.444 39.130 0.00 0.00 38.71 3.18
25 26 2.353269 TCGTGTGTGAAGCAATTTCGTT 59.647 40.909 0.00 0.00 38.71 3.85
26 27 1.937223 TCGTGTGTGAAGCAATTTCGT 59.063 42.857 0.00 0.00 38.71 3.85
27 28 2.032894 AGTCGTGTGTGAAGCAATTTCG 60.033 45.455 0.00 0.00 38.71 3.46
28 29 3.242739 ACAGTCGTGTGTGAAGCAATTTC 60.243 43.478 0.00 0.00 34.75 2.17
29 30 2.682856 ACAGTCGTGTGTGAAGCAATTT 59.317 40.909 0.00 0.00 34.75 1.82
30 31 2.288666 ACAGTCGTGTGTGAAGCAATT 58.711 42.857 0.00 0.00 34.75 2.32
31 32 1.953559 ACAGTCGTGTGTGAAGCAAT 58.046 45.000 0.00 0.00 34.75 3.56
32 33 3.451793 ACAGTCGTGTGTGAAGCAA 57.548 47.368 0.00 0.00 34.75 3.91
42 43 8.749930 GTACAAATCGTATGCACACAGTCGTG 62.750 46.154 0.00 0.00 39.73 4.35
43 44 2.363788 AATCGTATGCACACAGTCGT 57.636 45.000 0.00 0.00 0.00 4.34
44 45 2.411748 ACAAATCGTATGCACACAGTCG 59.588 45.455 0.00 0.00 0.00 4.18
45 46 4.490319 CGTACAAATCGTATGCACACAGTC 60.490 45.833 0.00 0.00 30.48 3.51
46 47 3.366724 CGTACAAATCGTATGCACACAGT 59.633 43.478 0.00 0.00 30.48 3.55
47 48 3.610677 TCGTACAAATCGTATGCACACAG 59.389 43.478 0.00 0.00 37.07 3.66
48 49 3.576648 TCGTACAAATCGTATGCACACA 58.423 40.909 0.00 0.00 37.07 3.72
49 50 4.317839 GGATCGTACAAATCGTATGCACAC 60.318 45.833 0.00 0.00 37.07 3.82
50 51 3.799963 GGATCGTACAAATCGTATGCACA 59.200 43.478 0.00 0.00 37.07 4.57
51 52 4.049186 AGGATCGTACAAATCGTATGCAC 58.951 43.478 0.00 0.00 37.07 4.57
52 53 4.316205 AGGATCGTACAAATCGTATGCA 57.684 40.909 0.00 0.00 37.07 3.96
53 54 4.150098 GGAAGGATCGTACAAATCGTATGC 59.850 45.833 0.00 0.00 37.07 3.14
54 55 5.402568 CAGGAAGGATCGTACAAATCGTATG 59.597 44.000 0.00 0.00 38.30 2.39
55 56 5.509163 CCAGGAAGGATCGTACAAATCGTAT 60.509 44.000 0.00 0.00 41.22 3.06
56 57 4.202080 CCAGGAAGGATCGTACAAATCGTA 60.202 45.833 0.00 0.00 41.22 3.43
57 58 3.430374 CCAGGAAGGATCGTACAAATCGT 60.430 47.826 0.00 0.00 41.22 3.73
58 59 3.123804 CCAGGAAGGATCGTACAAATCG 58.876 50.000 0.00 0.00 41.22 3.34
59 60 2.872858 GCCAGGAAGGATCGTACAAATC 59.127 50.000 0.00 0.00 41.22 2.17
60 61 2.421529 GGCCAGGAAGGATCGTACAAAT 60.422 50.000 0.00 0.00 41.22 2.32
61 62 1.065709 GGCCAGGAAGGATCGTACAAA 60.066 52.381 0.00 0.00 41.22 2.83
62 63 0.539986 GGCCAGGAAGGATCGTACAA 59.460 55.000 0.00 0.00 41.22 2.41
63 64 1.672854 CGGCCAGGAAGGATCGTACA 61.673 60.000 2.24 0.00 41.22 2.90
64 65 1.067582 CGGCCAGGAAGGATCGTAC 59.932 63.158 2.24 0.00 41.22 3.67
65 66 1.380785 ACGGCCAGGAAGGATCGTA 60.381 57.895 2.24 0.00 43.53 3.43
66 67 2.683933 ACGGCCAGGAAGGATCGT 60.684 61.111 2.24 0.00 41.63 3.73
67 68 2.202932 CACGGCCAGGAAGGATCG 60.203 66.667 2.24 0.00 41.22 3.69
68 69 2.514824 GCACGGCCAGGAAGGATC 60.515 66.667 2.24 0.00 41.22 3.36
79 80 2.286127 GACTGGACTCTAGGCACGGC 62.286 65.000 0.00 0.00 0.00 5.68
80 81 1.668101 GGACTGGACTCTAGGCACGG 61.668 65.000 0.00 0.00 0.00 4.94
81 82 0.965866 TGGACTGGACTCTAGGCACG 60.966 60.000 0.00 0.00 0.00 5.34
82 83 1.267121 TTGGACTGGACTCTAGGCAC 58.733 55.000 0.00 0.00 0.00 5.01
83 84 1.623811 GTTTGGACTGGACTCTAGGCA 59.376 52.381 0.00 0.00 0.00 4.75
84 85 1.066071 GGTTTGGACTGGACTCTAGGC 60.066 57.143 0.00 0.00 0.00 3.93
85 86 1.555533 GGGTTTGGACTGGACTCTAGG 59.444 57.143 0.00 0.00 0.00 3.02
86 87 2.257207 TGGGTTTGGACTGGACTCTAG 58.743 52.381 0.00 0.00 0.00 2.43
87 88 2.409064 TGGGTTTGGACTGGACTCTA 57.591 50.000 0.00 0.00 0.00 2.43
88 89 1.518367 TTGGGTTTGGACTGGACTCT 58.482 50.000 0.00 0.00 0.00 3.24
89 90 1.954382 GTTTGGGTTTGGACTGGACTC 59.046 52.381 0.00 0.00 0.00 3.36
90 91 1.411074 GGTTTGGGTTTGGACTGGACT 60.411 52.381 0.00 0.00 0.00 3.85
91 92 1.037493 GGTTTGGGTTTGGACTGGAC 58.963 55.000 0.00 0.00 0.00 4.02
92 93 0.105913 GGGTTTGGGTTTGGACTGGA 60.106 55.000 0.00 0.00 0.00 3.86
93 94 1.460273 CGGGTTTGGGTTTGGACTGG 61.460 60.000 0.00 0.00 0.00 4.00
94 95 0.753848 ACGGGTTTGGGTTTGGACTG 60.754 55.000 0.00 0.00 0.00 3.51
95 96 0.466739 GACGGGTTTGGGTTTGGACT 60.467 55.000 0.00 0.00 0.00 3.85
96 97 1.788067 CGACGGGTTTGGGTTTGGAC 61.788 60.000 0.00 0.00 0.00 4.02
97 98 1.526455 CGACGGGTTTGGGTTTGGA 60.526 57.895 0.00 0.00 0.00 3.53
98 99 1.824760 ACGACGGGTTTGGGTTTGG 60.825 57.895 0.00 0.00 0.00 3.28
99 100 1.357334 CACGACGGGTTTGGGTTTG 59.643 57.895 0.00 0.00 0.00 2.93
100 101 2.483197 GCACGACGGGTTTGGGTTT 61.483 57.895 0.00 0.00 0.00 3.27
101 102 2.903350 GCACGACGGGTTTGGGTT 60.903 61.111 0.00 0.00 0.00 4.11
112 113 4.489795 CGAGCATGCACGCACGAC 62.490 66.667 23.93 0.00 46.94 4.34
130 131 1.807165 ATACGTGACAGCGCTGCAG 60.807 57.895 36.28 25.16 34.88 4.41
131 132 2.094066 CATACGTGACAGCGCTGCA 61.094 57.895 36.28 29.47 34.88 4.41
132 133 1.148157 ATCATACGTGACAGCGCTGC 61.148 55.000 36.28 27.34 37.14 5.25
133 134 0.848942 GATCATACGTGACAGCGCTG 59.151 55.000 34.89 34.89 37.14 5.18
134 135 0.455815 TGATCATACGTGACAGCGCT 59.544 50.000 2.64 2.64 37.14 5.92
135 136 1.491670 ATGATCATACGTGACAGCGC 58.508 50.000 6.36 0.00 37.14 5.92
136 137 3.628017 TGTATGATCATACGTGACAGCG 58.372 45.455 31.03 0.00 44.97 5.18
137 138 4.611943 ACTGTATGATCATACGTGACAGC 58.388 43.478 31.03 13.07 44.97 4.40
138 139 5.821204 TGACTGTATGATCATACGTGACAG 58.179 41.667 30.38 27.59 44.97 3.51
139 140 5.828299 TGACTGTATGATCATACGTGACA 57.172 39.130 30.38 27.36 44.97 3.58
140 141 5.859114 GGATGACTGTATGATCATACGTGAC 59.141 44.000 30.38 25.94 44.97 3.67
141 142 6.013842 GGATGACTGTATGATCATACGTGA 57.986 41.667 30.38 26.10 44.97 4.35
145 146 5.518128 GCATCGGATGACTGTATGATCATAC 59.482 44.000 30.80 30.80 42.95 2.39
146 147 5.185635 TGCATCGGATGACTGTATGATCATA 59.814 40.000 21.69 11.49 35.67 2.15
147 148 4.020839 TGCATCGGATGACTGTATGATCAT 60.021 41.667 21.69 13.81 38.28 2.45
148 149 3.321682 TGCATCGGATGACTGTATGATCA 59.678 43.478 21.69 0.00 0.00 2.92
149 150 3.917988 TGCATCGGATGACTGTATGATC 58.082 45.455 21.69 0.53 0.00 2.92
150 151 4.341366 TTGCATCGGATGACTGTATGAT 57.659 40.909 21.69 0.00 0.00 2.45
151 152 3.817709 TTGCATCGGATGACTGTATGA 57.182 42.857 21.69 0.00 0.00 2.15
152 153 4.274214 ACATTTGCATCGGATGACTGTATG 59.726 41.667 21.69 16.19 0.00 2.39
153 154 4.274214 CACATTTGCATCGGATGACTGTAT 59.726 41.667 21.69 4.33 0.00 2.29
154 155 3.622612 CACATTTGCATCGGATGACTGTA 59.377 43.478 21.69 2.20 0.00 2.74
155 156 2.421073 CACATTTGCATCGGATGACTGT 59.579 45.455 21.69 13.82 0.00 3.55
156 157 2.421073 ACACATTTGCATCGGATGACTG 59.579 45.455 21.69 13.26 0.00 3.51
157 158 2.679837 GACACATTTGCATCGGATGACT 59.320 45.455 21.69 0.00 0.00 3.41
158 159 2.537529 CGACACATTTGCATCGGATGAC 60.538 50.000 21.69 12.74 0.00 3.06
159 160 1.665169 CGACACATTTGCATCGGATGA 59.335 47.619 21.69 1.11 0.00 2.92
160 161 1.398041 ACGACACATTTGCATCGGATG 59.602 47.619 13.63 13.63 38.88 3.51
161 162 1.737838 ACGACACATTTGCATCGGAT 58.262 45.000 9.67 0.00 38.88 4.18
162 163 2.371910 TACGACACATTTGCATCGGA 57.628 45.000 9.67 0.00 38.88 4.55
163 164 2.351418 ACATACGACACATTTGCATCGG 59.649 45.455 9.67 0.00 38.88 4.18
164 165 3.656651 ACATACGACACATTTGCATCG 57.343 42.857 3.71 3.71 40.39 3.84
165 166 6.073819 TGCTATACATACGACACATTTGCATC 60.074 38.462 0.00 0.00 0.00 3.91
166 167 5.757808 TGCTATACATACGACACATTTGCAT 59.242 36.000 0.00 0.00 0.00 3.96
167 168 5.112686 TGCTATACATACGACACATTTGCA 58.887 37.500 0.00 0.00 0.00 4.08
168 169 5.651172 TGCTATACATACGACACATTTGC 57.349 39.130 0.00 0.00 0.00 3.68
169 170 5.610338 CGCTGCTATACATACGACACATTTG 60.610 44.000 0.00 0.00 31.29 2.32
170 171 4.444388 CGCTGCTATACATACGACACATTT 59.556 41.667 0.00 0.00 31.29 2.32
171 172 3.981416 CGCTGCTATACATACGACACATT 59.019 43.478 0.00 0.00 31.29 2.71
172 173 3.565516 CGCTGCTATACATACGACACAT 58.434 45.455 0.00 0.00 31.29 3.21
173 174 2.857104 GCGCTGCTATACATACGACACA 60.857 50.000 0.00 0.00 31.29 3.72
174 175 1.714460 GCGCTGCTATACATACGACAC 59.286 52.381 0.00 0.00 31.29 3.67
175 176 1.335597 GGCGCTGCTATACATACGACA 60.336 52.381 7.64 0.00 36.15 4.35
176 177 1.337821 GGCGCTGCTATACATACGAC 58.662 55.000 7.64 0.00 31.29 4.34
177 178 0.109919 CGGCGCTGCTATACATACGA 60.110 55.000 7.64 0.00 31.29 3.43
178 179 0.386858 ACGGCGCTGCTATACATACG 60.387 55.000 18.15 4.25 0.00 3.06
179 180 2.095364 ACTACGGCGCTGCTATACATAC 60.095 50.000 18.15 0.00 0.00 2.39
180 181 2.156917 ACTACGGCGCTGCTATACATA 58.843 47.619 18.15 0.00 0.00 2.29
181 182 0.959553 ACTACGGCGCTGCTATACAT 59.040 50.000 18.15 0.00 0.00 2.29
182 183 1.534163 CTACTACGGCGCTGCTATACA 59.466 52.381 18.15 0.00 0.00 2.29
183 184 1.534595 ACTACTACGGCGCTGCTATAC 59.465 52.381 18.15 0.00 0.00 1.47
184 185 1.888215 ACTACTACGGCGCTGCTATA 58.112 50.000 18.15 4.91 0.00 1.31
185 186 1.888215 TACTACTACGGCGCTGCTAT 58.112 50.000 18.15 3.81 0.00 2.97
186 187 1.667236 TTACTACTACGGCGCTGCTA 58.333 50.000 18.15 7.23 0.00 3.49
187 188 1.030457 ATTACTACTACGGCGCTGCT 58.970 50.000 18.15 6.33 0.00 4.24
188 189 2.031333 AGTATTACTACTACGGCGCTGC 60.031 50.000 18.15 0.00 36.40 5.25
189 190 3.497640 AGAGTATTACTACTACGGCGCTG 59.502 47.826 16.39 16.39 38.33 5.18
190 191 3.497640 CAGAGTATTACTACTACGGCGCT 59.502 47.826 6.90 0.00 38.33 5.92
191 192 3.808095 CAGAGTATTACTACTACGGCGC 58.192 50.000 6.90 0.00 38.33 6.53
192 193 3.364764 GGCAGAGTATTACTACTACGGCG 60.365 52.174 4.80 4.80 38.33 6.46
193 194 3.364764 CGGCAGAGTATTACTACTACGGC 60.365 52.174 0.00 0.00 38.33 5.68
194 195 3.364764 GCGGCAGAGTATTACTACTACGG 60.365 52.174 0.00 0.00 38.33 4.02
195 196 3.364764 GGCGGCAGAGTATTACTACTACG 60.365 52.174 3.07 1.88 38.33 3.51
196 197 3.364764 CGGCGGCAGAGTATTACTACTAC 60.365 52.174 10.53 0.00 38.33 2.73
197 198 2.810274 CGGCGGCAGAGTATTACTACTA 59.190 50.000 10.53 0.00 38.33 1.82
198 199 1.607628 CGGCGGCAGAGTATTACTACT 59.392 52.381 10.53 0.00 40.98 2.57
199 200 1.929482 GCGGCGGCAGAGTATTACTAC 60.929 57.143 9.78 0.00 39.62 2.73
200 201 0.313043 GCGGCGGCAGAGTATTACTA 59.687 55.000 9.78 0.00 39.62 1.82
201 202 1.067582 GCGGCGGCAGAGTATTACT 59.932 57.895 9.78 0.00 39.62 2.24
202 203 1.227147 TGCGGCGGCAGAGTATTAC 60.227 57.895 15.76 0.00 46.21 1.89
203 204 3.212275 TGCGGCGGCAGAGTATTA 58.788 55.556 15.76 0.00 46.21 0.98
215 216 2.334946 TTCTGTTCCTGCATGCGGC 61.335 57.895 21.64 8.32 45.13 6.53
216 217 0.957395 AGTTCTGTTCCTGCATGCGG 60.957 55.000 20.13 20.13 0.00 5.69
217 218 0.445436 GAGTTCTGTTCCTGCATGCG 59.555 55.000 14.09 7.87 0.00 4.73
218 219 0.807496 GGAGTTCTGTTCCTGCATGC 59.193 55.000 11.82 11.82 0.00 4.06
219 220 2.486472 AGGAGTTCTGTTCCTGCATG 57.514 50.000 0.00 0.00 43.38 4.06
220 221 3.618690 GTAGGAGTTCTGTTCCTGCAT 57.381 47.619 4.11 0.00 44.65 3.96
222 223 2.563179 TCTGTAGGAGTTCTGTTCCTGC 59.437 50.000 4.11 3.47 44.65 4.85
223 224 4.448537 CTCTGTAGGAGTTCTGTTCCTG 57.551 50.000 4.11 0.00 44.65 3.86
234 235 2.998670 TCGTGTCGTAACTCTGTAGGAG 59.001 50.000 0.00 0.00 46.87 3.69
235 236 2.738846 GTCGTGTCGTAACTCTGTAGGA 59.261 50.000 0.00 0.00 0.00 2.94
236 237 2.740981 AGTCGTGTCGTAACTCTGTAGG 59.259 50.000 0.00 0.00 0.00 3.18
237 238 4.386954 TGTAGTCGTGTCGTAACTCTGTAG 59.613 45.833 0.00 0.00 0.00 2.74
238 239 4.306600 TGTAGTCGTGTCGTAACTCTGTA 58.693 43.478 0.00 0.00 0.00 2.74
239 240 3.133691 TGTAGTCGTGTCGTAACTCTGT 58.866 45.455 0.00 0.00 0.00 3.41
240 241 3.800929 TGTAGTCGTGTCGTAACTCTG 57.199 47.619 0.00 0.00 0.00 3.35
241 242 3.750130 ACATGTAGTCGTGTCGTAACTCT 59.250 43.478 0.00 0.00 39.28 3.24
242 243 4.075763 ACATGTAGTCGTGTCGTAACTC 57.924 45.455 0.00 0.00 39.28 3.01
243 244 4.494350 AACATGTAGTCGTGTCGTAACT 57.506 40.909 0.00 0.00 42.20 2.24
244 245 4.662394 GCAAACATGTAGTCGTGTCGTAAC 60.662 45.833 0.00 0.00 42.20 2.50
245 246 3.426191 GCAAACATGTAGTCGTGTCGTAA 59.574 43.478 0.00 0.00 42.20 3.18
246 247 2.981805 GCAAACATGTAGTCGTGTCGTA 59.018 45.455 0.00 0.00 42.20 3.43
247 248 1.790623 GCAAACATGTAGTCGTGTCGT 59.209 47.619 0.00 0.00 42.20 4.34
248 249 1.790043 TGCAAACATGTAGTCGTGTCG 59.210 47.619 0.00 0.00 42.20 4.35
260 261 5.072741 ACTCCTTGTAGTTCATGCAAACAT 58.927 37.500 4.19 0.00 32.74 2.71
261 262 4.460263 ACTCCTTGTAGTTCATGCAAACA 58.540 39.130 4.19 0.00 32.74 2.83
262 263 5.701290 AGTACTCCTTGTAGTTCATGCAAAC 59.299 40.000 0.00 0.00 32.74 2.93
263 264 5.865085 AGTACTCCTTGTAGTTCATGCAAA 58.135 37.500 0.00 0.00 32.74 3.68
264 265 5.011635 TGAGTACTCCTTGTAGTTCATGCAA 59.988 40.000 20.11 0.00 35.12 4.08
265 266 4.526650 TGAGTACTCCTTGTAGTTCATGCA 59.473 41.667 20.11 0.00 35.12 3.96
266 267 5.073311 TGAGTACTCCTTGTAGTTCATGC 57.927 43.478 20.11 0.00 35.12 4.06
267 268 5.869888 GGTTGAGTACTCCTTGTAGTTCATG 59.130 44.000 20.11 0.00 35.12 3.07
268 269 5.046520 GGGTTGAGTACTCCTTGTAGTTCAT 60.047 44.000 20.11 0.00 35.12 2.57
269 270 4.282703 GGGTTGAGTACTCCTTGTAGTTCA 59.717 45.833 20.11 0.00 35.12 3.18
270 271 4.527427 AGGGTTGAGTACTCCTTGTAGTTC 59.473 45.833 20.11 1.08 35.12 3.01
271 272 4.490706 AGGGTTGAGTACTCCTTGTAGTT 58.509 43.478 20.11 0.00 35.12 2.24
272 273 4.087907 GAGGGTTGAGTACTCCTTGTAGT 58.912 47.826 20.11 0.00 37.50 2.73
273 274 3.447944 GGAGGGTTGAGTACTCCTTGTAG 59.552 52.174 20.11 0.00 45.73 2.74
274 275 3.438183 GGAGGGTTGAGTACTCCTTGTA 58.562 50.000 20.11 0.00 45.73 2.41
275 276 2.258109 GGAGGGTTGAGTACTCCTTGT 58.742 52.381 20.11 1.14 45.73 3.16
276 277 1.204941 CGGAGGGTTGAGTACTCCTTG 59.795 57.143 20.11 4.18 46.74 3.61
277 278 1.203149 ACGGAGGGTTGAGTACTCCTT 60.203 52.381 20.11 1.67 46.74 3.36
278 279 0.408700 ACGGAGGGTTGAGTACTCCT 59.591 55.000 20.11 10.45 46.74 3.69
279 280 1.264295 AACGGAGGGTTGAGTACTCC 58.736 55.000 20.11 5.47 45.73 3.85
280 281 2.612221 CCAAACGGAGGGTTGAGTACTC 60.612 54.545 16.32 16.32 39.30 2.59
281 282 1.346722 CCAAACGGAGGGTTGAGTACT 59.653 52.381 0.00 0.00 39.30 2.73
282 283 1.345415 TCCAAACGGAGGGTTGAGTAC 59.655 52.381 0.00 0.00 39.30 2.73
283 284 1.719529 TCCAAACGGAGGGTTGAGTA 58.280 50.000 0.00 0.00 39.30 2.59
284 285 0.841289 TTCCAAACGGAGGGTTGAGT 59.159 50.000 0.00 0.00 39.30 3.41
285 286 2.200373 ATTCCAAACGGAGGGTTGAG 57.800 50.000 0.00 0.00 39.30 3.02
286 287 2.668144 AATTCCAAACGGAGGGTTGA 57.332 45.000 0.00 0.00 39.30 3.18
287 288 3.418047 AGTAATTCCAAACGGAGGGTTG 58.582 45.455 0.00 0.00 39.30 3.77
288 289 3.801307 AGTAATTCCAAACGGAGGGTT 57.199 42.857 0.00 0.00 41.76 4.11
289 290 3.181437 ACAAGTAATTCCAAACGGAGGGT 60.181 43.478 0.00 0.00 32.88 4.34
290 291 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
291 292 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
292 293 4.091509 CGAGACAAGTAATTCCAAACGGAG 59.908 45.833 0.00 0.00 32.88 4.63
293 294 3.991773 CGAGACAAGTAATTCCAAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
294 295 3.991773 TCGAGACAAGTAATTCCAAACGG 59.008 43.478 0.00 0.00 0.00 4.44
295 296 5.585500 TTCGAGACAAGTAATTCCAAACG 57.415 39.130 0.00 0.00 0.00 3.60
296 297 7.326063 CCATTTTCGAGACAAGTAATTCCAAAC 59.674 37.037 0.00 0.00 0.00 2.93
297 298 7.229707 TCCATTTTCGAGACAAGTAATTCCAAA 59.770 33.333 0.00 0.00 0.00 3.28
298 299 6.712998 TCCATTTTCGAGACAAGTAATTCCAA 59.287 34.615 0.00 0.00 0.00 3.53
299 300 6.234920 TCCATTTTCGAGACAAGTAATTCCA 58.765 36.000 0.00 0.00 0.00 3.53
300 301 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
301 302 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
302 303 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
303 304 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
304 305 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
305 306 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
306 307 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
307 308 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
308 309 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
309 310 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
310 311 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
311 312 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
312 313 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
339 340 8.310382 GCAGAAGTGGATGTATCTAGATGTATT 58.690 37.037 15.79 0.00 0.00 1.89
340 341 7.362487 CGCAGAAGTGGATGTATCTAGATGTAT 60.362 40.741 15.79 9.11 0.00 2.29
341 342 6.072452 CGCAGAAGTGGATGTATCTAGATGTA 60.072 42.308 15.79 4.44 0.00 2.29
342 343 5.278709 CGCAGAAGTGGATGTATCTAGATGT 60.279 44.000 15.79 1.25 0.00 3.06
343 344 5.048434 TCGCAGAAGTGGATGTATCTAGATG 60.048 44.000 15.79 0.00 0.00 2.90
344 345 5.048364 GTCGCAGAAGTGGATGTATCTAGAT 60.048 44.000 10.73 10.73 39.69 1.98
345 346 4.276183 GTCGCAGAAGTGGATGTATCTAGA 59.724 45.833 0.00 0.00 39.69 2.43
346 347 4.036852 TGTCGCAGAAGTGGATGTATCTAG 59.963 45.833 0.00 0.00 39.69 2.43
347 348 3.951680 TGTCGCAGAAGTGGATGTATCTA 59.048 43.478 0.00 0.00 39.69 1.98
348 349 2.760650 TGTCGCAGAAGTGGATGTATCT 59.239 45.455 0.00 0.00 39.69 1.98
349 350 3.165058 TGTCGCAGAAGTGGATGTATC 57.835 47.619 0.00 0.00 39.69 2.24
350 351 3.055819 ACTTGTCGCAGAAGTGGATGTAT 60.056 43.478 0.00 0.00 39.69 2.29
351 352 2.299013 ACTTGTCGCAGAAGTGGATGTA 59.701 45.455 0.00 0.00 39.69 2.29
352 353 1.070758 ACTTGTCGCAGAAGTGGATGT 59.929 47.619 0.00 0.00 39.69 3.06
353 354 1.800805 ACTTGTCGCAGAAGTGGATG 58.199 50.000 0.00 0.00 39.69 3.51
354 355 3.678056 TTACTTGTCGCAGAAGTGGAT 57.322 42.857 8.33 0.00 39.69 3.41
355 356 3.678056 ATTACTTGTCGCAGAAGTGGA 57.322 42.857 8.33 0.41 39.69 4.02
356 357 3.125316 GGAATTACTTGTCGCAGAAGTGG 59.875 47.826 8.33 0.00 39.69 4.00
357 358 3.181530 CGGAATTACTTGTCGCAGAAGTG 60.182 47.826 8.33 0.00 39.69 3.16
358 359 2.993899 CGGAATTACTTGTCGCAGAAGT 59.006 45.455 0.00 0.00 39.69 3.01
359 360 3.250744 TCGGAATTACTTGTCGCAGAAG 58.749 45.455 0.00 0.00 39.69 2.85
360 361 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
361 362 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
362 363 2.993899 AGTTCGGAATTACTTGTCGCAG 59.006 45.455 0.00 0.00 0.00 5.18
363 364 2.734606 CAGTTCGGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
364 365 2.991190 TCAGTTCGGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
365 366 3.612860 CCTCAGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
366 367 3.933332 CCCTCAGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
367 368 3.581332 TCCCTCAGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
368 369 4.184629 CTCCCTCAGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
369 370 3.838903 ACTCCCTCAGTTCGGAATTACTT 59.161 43.478 0.00 0.00 26.56 2.24
370 371 3.442076 ACTCCCTCAGTTCGGAATTACT 58.558 45.455 0.00 0.00 26.56 2.24
371 372 3.889520 ACTCCCTCAGTTCGGAATTAC 57.110 47.619 0.00 0.00 26.56 1.89
372 373 4.346730 TGTACTCCCTCAGTTCGGAATTA 58.653 43.478 0.00 0.00 36.43 1.40
373 374 3.170717 TGTACTCCCTCAGTTCGGAATT 58.829 45.455 0.00 0.00 36.43 2.17
374 375 2.816411 TGTACTCCCTCAGTTCGGAAT 58.184 47.619 0.00 0.00 36.43 3.01
375 376 2.297698 TGTACTCCCTCAGTTCGGAA 57.702 50.000 0.00 0.00 36.43 4.30
376 377 2.168496 CTTGTACTCCCTCAGTTCGGA 58.832 52.381 0.00 0.00 36.43 4.55
377 378 1.893801 ACTTGTACTCCCTCAGTTCGG 59.106 52.381 0.00 0.00 36.43 4.30
378 379 2.557056 TCACTTGTACTCCCTCAGTTCG 59.443 50.000 0.00 0.00 36.43 3.95
379 380 4.220821 TCATCACTTGTACTCCCTCAGTTC 59.779 45.833 0.00 0.00 36.43 3.01
380 381 4.021016 GTCATCACTTGTACTCCCTCAGTT 60.021 45.833 0.00 0.00 36.43 3.16
381 382 3.511934 GTCATCACTTGTACTCCCTCAGT 59.488 47.826 0.00 0.00 39.41 3.41
382 383 3.118956 GGTCATCACTTGTACTCCCTCAG 60.119 52.174 0.00 0.00 0.00 3.35
383 384 2.832129 GGTCATCACTTGTACTCCCTCA 59.168 50.000 0.00 0.00 0.00 3.86
384 385 2.168728 GGGTCATCACTTGTACTCCCTC 59.831 54.545 0.00 0.00 0.00 4.30
385 386 2.188817 GGGTCATCACTTGTACTCCCT 58.811 52.381 0.00 0.00 0.00 4.20
386 387 2.093447 CAGGGTCATCACTTGTACTCCC 60.093 54.545 0.00 0.00 0.00 4.30
387 388 2.678190 GCAGGGTCATCACTTGTACTCC 60.678 54.545 0.00 0.00 0.00 3.85
388 389 2.234908 AGCAGGGTCATCACTTGTACTC 59.765 50.000 0.00 0.00 0.00 2.59
389 390 2.027745 CAGCAGGGTCATCACTTGTACT 60.028 50.000 0.00 0.00 0.00 2.73
390 391 2.289694 ACAGCAGGGTCATCACTTGTAC 60.290 50.000 0.00 0.00 0.00 2.90
391 392 1.977854 ACAGCAGGGTCATCACTTGTA 59.022 47.619 0.00 0.00 0.00 2.41
392 393 0.767375 ACAGCAGGGTCATCACTTGT 59.233 50.000 0.00 0.00 0.00 3.16
393 394 1.162698 CACAGCAGGGTCATCACTTG 58.837 55.000 0.00 0.00 0.00 3.16
394 395 0.607489 GCACAGCAGGGTCATCACTT 60.607 55.000 0.00 0.00 0.00 3.16
395 396 1.002868 GCACAGCAGGGTCATCACT 60.003 57.895 0.00 0.00 0.00 3.41
396 397 1.302752 TGCACAGCAGGGTCATCAC 60.303 57.895 0.00 0.00 33.32 3.06
397 398 1.302752 GTGCACAGCAGGGTCATCA 60.303 57.895 13.17 0.00 40.08 3.07
398 399 2.393768 CGTGCACAGCAGGGTCATC 61.394 63.158 18.64 0.00 40.08 2.92
399 400 2.359107 CGTGCACAGCAGGGTCAT 60.359 61.111 18.64 0.00 40.08 3.06
445 450 1.142870 CCTGTTCCTGTTCCTGTTCCA 59.857 52.381 0.00 0.00 0.00 3.53
447 452 1.897560 CCCTGTTCCTGTTCCTGTTC 58.102 55.000 0.00 0.00 0.00 3.18
448 453 0.178990 GCCCTGTTCCTGTTCCTGTT 60.179 55.000 0.00 0.00 0.00 3.16
449 454 1.456287 GCCCTGTTCCTGTTCCTGT 59.544 57.895 0.00 0.00 0.00 4.00
450 455 1.672356 CGCCCTGTTCCTGTTCCTG 60.672 63.158 0.00 0.00 0.00 3.86
451 456 2.750350 CGCCCTGTTCCTGTTCCT 59.250 61.111 0.00 0.00 0.00 3.36
452 457 3.056328 GCGCCCTGTTCCTGTTCC 61.056 66.667 0.00 0.00 0.00 3.62
607 616 2.482333 CGGCTCGTCCCCTACTGAG 61.482 68.421 0.00 0.00 34.15 3.35
653 662 0.457853 CGCGGTAACTCTGCTGCTAA 60.458 55.000 0.00 0.00 45.50 3.09
654 663 1.138883 CGCGGTAACTCTGCTGCTA 59.861 57.895 0.00 0.00 45.50 3.49
655 664 2.125912 CGCGGTAACTCTGCTGCT 60.126 61.111 0.00 0.00 45.50 4.24
656 665 3.188786 CCGCGGTAACTCTGCTGC 61.189 66.667 19.50 0.00 45.50 5.25
657 666 3.188786 GCCGCGGTAACTCTGCTG 61.189 66.667 28.70 0.00 45.50 4.41
658 667 3.691342 TGCCGCGGTAACTCTGCT 61.691 61.111 28.70 0.00 45.50 4.24
1272 1297 1.198867 CAAAATGTCGACAATGGGCGA 59.801 47.619 24.13 0.00 0.00 5.54
1273 1298 1.198867 TCAAAATGTCGACAATGGGCG 59.801 47.619 24.13 9.33 0.00 6.13
1274 1299 2.030363 TGTCAAAATGTCGACAATGGGC 60.030 45.455 24.13 14.11 39.14 5.36
1282 1307 3.567585 TGGCAGAAATGTCAAAATGTCGA 59.432 39.130 0.00 0.00 0.00 4.20
1571 1612 3.781407 TGACCCCCAAATCCGACTAATTA 59.219 43.478 0.00 0.00 0.00 1.40
1808 1852 0.901124 AGAAGAGAATGCGGCTCTGT 59.099 50.000 0.00 0.00 41.66 3.41
1849 1893 1.068474 CAACCAGCGGAGTTAGAACG 58.932 55.000 1.50 0.00 0.00 3.95
1860 1904 0.935831 CAATGCACACACAACCAGCG 60.936 55.000 0.00 0.00 0.00 5.18
2143 2187 1.106944 CACCGAACTGCTTGGGGTTT 61.107 55.000 0.00 0.00 29.47 3.27
2189 2233 2.578664 GGGAAAAATGGCAGCGGG 59.421 61.111 0.00 0.00 0.00 6.13
2261 2324 2.998670 CAACGCATCTCTGTCATTCAGT 59.001 45.455 0.00 0.00 43.97 3.41
2273 2337 5.091261 AGATAGAAAAGTCCAACGCATCT 57.909 39.130 0.00 0.00 0.00 2.90
2331 2400 1.083401 CGTTCAGTGTTGCTGTCGC 60.083 57.895 0.00 0.00 45.23 5.19
2339 2408 3.135994 GACATGGTTACCGTTCAGTGTT 58.864 45.455 0.00 0.00 0.00 3.32
2381 2457 2.740447 CCATACTGATGATGATGGCACG 59.260 50.000 0.00 0.00 34.73 5.34
2411 2501 0.319040 CCCCTGATACAGCGTCGATG 60.319 60.000 9.31 9.31 0.00 3.84
2424 2518 2.367377 CATCTCCCTGGCCCCTGA 60.367 66.667 0.00 0.00 0.00 3.86
2491 2585 1.103398 CAAAGGCGAGCCAATAGGGG 61.103 60.000 17.18 0.00 38.92 4.79
2592 2694 0.861185 GAACCACGTTAACCGGTGAC 59.139 55.000 8.52 9.82 42.24 3.67
2595 2697 0.249996 CAGGAACCACGTTAACCGGT 60.250 55.000 0.00 0.00 42.24 5.28
2611 2717 5.925397 GCAGATCTATTGTATCAGTGACAGG 59.075 44.000 0.00 0.00 0.00 4.00
2624 2730 3.242969 GCACCACACATGCAGATCTATTG 60.243 47.826 0.00 0.00 42.88 1.90
2626 2732 2.569059 GCACCACACATGCAGATCTAT 58.431 47.619 0.00 0.00 42.88 1.98
2628 2734 2.864114 GCACCACACATGCAGATCT 58.136 52.632 0.00 0.00 42.88 2.75
2647 2753 7.880195 ACAAGTGATCTAAAGCAGATGTTTAGT 59.120 33.333 0.00 0.00 44.41 2.24
2648 2754 8.261492 ACAAGTGATCTAAAGCAGATGTTTAG 57.739 34.615 0.00 0.00 44.41 1.85
2649 2755 9.151471 GTACAAGTGATCTAAAGCAGATGTTTA 57.849 33.333 0.00 0.00 44.41 2.01
2650 2756 7.880195 AGTACAAGTGATCTAAAGCAGATGTTT 59.120 33.333 0.00 0.00 44.41 2.83
2651 2757 7.390027 AGTACAAGTGATCTAAAGCAGATGTT 58.610 34.615 0.00 0.00 44.41 2.71
2653 2759 8.932945 TTAGTACAAGTGATCTAAAGCAGATG 57.067 34.615 0.00 0.00 44.41 2.90
2655 2761 8.123639 ACTTAGTACAAGTGATCTAAAGCAGA 57.876 34.615 9.11 0.00 37.79 4.26
2692 2890 3.402110 CCCCCTCACAAATTTGCTTTTC 58.598 45.455 18.12 0.00 0.00 2.29
2695 2893 0.686789 GCCCCCTCACAAATTTGCTT 59.313 50.000 18.12 0.00 0.00 3.91
2717 2915 1.215173 TCACCTGCCAATCCATAAGGG 59.785 52.381 0.00 0.00 34.83 3.95
2718 2916 2.734755 TCACCTGCCAATCCATAAGG 57.265 50.000 0.00 0.00 0.00 2.69
2719 2917 3.379372 CACTTCACCTGCCAATCCATAAG 59.621 47.826 0.00 0.00 0.00 1.73
2746 2945 4.082245 GCACCAGTACCACTAATTTGCAAT 60.082 41.667 0.00 0.00 0.00 3.56
2751 2950 4.634012 TCAGCACCAGTACCACTAATTT 57.366 40.909 0.00 0.00 0.00 1.82
2785 2987 3.198236 CTGCAACCGCCACAACCTG 62.198 63.158 0.00 0.00 37.32 4.00
2812 3016 4.821589 CGTCTTCAGCGGCCCCTC 62.822 72.222 0.00 0.00 0.00 4.30
3065 3269 3.859961 CCATTACACAGATCAGTCACGAC 59.140 47.826 0.00 0.00 0.00 4.34
3119 3331 1.000506 GTACAGCACTTCCACCTCGAA 59.999 52.381 0.00 0.00 0.00 3.71
3134 3346 3.568430 TCATATAGTGACAGGCGGTACAG 59.432 47.826 0.00 0.00 0.00 2.74
3146 3358 4.746611 CAGAAATGCGCAGTCATATAGTGA 59.253 41.667 18.32 0.00 0.00 3.41
3147 3359 4.509230 ACAGAAATGCGCAGTCATATAGTG 59.491 41.667 18.32 10.97 0.00 2.74
3157 3369 1.154093 CAGCCACAGAAATGCGCAG 60.154 57.895 18.32 3.73 0.00 5.18
3160 3372 1.063616 CAGATCAGCCACAGAAATGCG 59.936 52.381 0.00 0.00 0.00 4.73
3163 3379 2.641305 GAGCAGATCAGCCACAGAAAT 58.359 47.619 6.46 0.00 34.23 2.17
3168 3384 2.580815 CGGAGCAGATCAGCCACA 59.419 61.111 6.46 0.00 34.23 4.17
3175 3391 0.827368 AGAGGTTTCCGGAGCAGATC 59.173 55.000 3.34 0.76 0.00 2.75
3191 3407 3.650139 TGCATCATCATCGTGATCAGAG 58.350 45.455 0.00 0.00 36.72 3.35
3193 3409 3.391049 ACTGCATCATCATCGTGATCAG 58.609 45.455 0.00 11.34 36.72 2.90
3196 3412 2.798847 CGAACTGCATCATCATCGTGAT 59.201 45.455 0.00 0.00 39.34 3.06
3201 3417 0.383983 GCGCGAACTGCATCATCATC 60.384 55.000 12.10 0.00 46.97 2.92
3202 3418 1.645455 GCGCGAACTGCATCATCAT 59.355 52.632 12.10 0.00 46.97 2.45
3203 3419 2.801624 CGCGCGAACTGCATCATCA 61.802 57.895 28.94 0.00 46.97 3.07
3239 3455 4.120331 GCTTTTGCTCGCCGGCAT 62.120 61.111 28.98 0.00 42.09 4.40
3250 3469 2.781300 GCGAGGAGCGAGCTTTTG 59.219 61.111 0.00 0.00 44.57 2.44
3277 3496 2.046988 CATGTCACTCTGCCGGCA 60.047 61.111 30.59 30.59 0.00 5.69
3281 3500 3.031964 GCACGCATGTCACTCTGCC 62.032 63.158 0.00 0.00 34.89 4.85
3282 3501 2.477845 GCACGCATGTCACTCTGC 59.522 61.111 0.00 0.00 35.02 4.26
3283 3502 1.080435 ATCGCACGCATGTCACTCTG 61.080 55.000 0.00 0.00 0.00 3.35
3284 3503 0.390340 AATCGCACGCATGTCACTCT 60.390 50.000 0.00 0.00 0.00 3.24
3307 3526 2.897436 CGCTCCATCAGACTCATTTCA 58.103 47.619 0.00 0.00 0.00 2.69
3314 3533 1.607509 GCATATGCGCTCCATCAGACT 60.608 52.381 12.82 0.00 35.34 3.24
3718 3943 2.702592 TGGGAAATACTTAGGTGCGG 57.297 50.000 0.00 0.00 0.00 5.69
3830 4055 2.811431 TCATGCAAAAGTCTGGTTACCG 59.189 45.455 0.00 0.00 0.00 4.02
3937 4162 2.031516 CAGAGCCCGCTGTCAACTG 61.032 63.158 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.