Multiple sequence alignment - TraesCS3B01G163200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G163200 chr3B 100.000 3671 0 0 1 3671 160825576 160821906 0.000000e+00 6780.0
1 TraesCS3B01G163200 chr3B 96.814 816 24 2 2598 3412 52708578 52707764 0.000000e+00 1362.0
2 TraesCS3B01G163200 chr3B 90.345 435 40 2 2605 3038 153617445 153617878 1.480000e-158 569.0
3 TraesCS3B01G163200 chr3B 99.615 260 1 0 3412 3671 779088601 779088860 3.320000e-130 475.0
4 TraesCS3B01G163200 chr3A 87.125 1468 102 32 777 2206 120691964 120693382 0.000000e+00 1583.0
5 TraesCS3B01G163200 chr3A 89.295 383 22 7 2229 2602 120693510 120693882 2.580000e-126 462.0
6 TraesCS3B01G163200 chr5B 97.534 811 20 0 2602 3412 148994752 148993942 0.000000e+00 1387.0
7 TraesCS3B01G163200 chr5B 92.180 665 36 4 2755 3412 70966253 70966908 0.000000e+00 926.0
8 TraesCS3B01G163200 chr5B 95.866 387 14 1 3026 3412 503888474 503888090 3.110000e-175 625.0
9 TraesCS3B01G163200 chr5B 95.607 387 15 1 3026 3412 315762044 315761660 1.450000e-173 619.0
10 TraesCS3B01G163200 chr5B 99.234 261 2 0 3411 3671 518612651 518612391 4.290000e-129 472.0
11 TraesCS3B01G163200 chr2B 97.531 810 20 0 2603 3412 154851375 154850566 0.000000e+00 1386.0
12 TraesCS3B01G163200 chr2B 84.419 706 76 20 925 1602 763498211 763498910 0.000000e+00 664.0
13 TraesCS3B01G163200 chr2B 85.612 278 36 3 1926 2201 763503092 763503367 4.640000e-74 289.0
14 TraesCS3B01G163200 chr2B 92.903 155 9 1 2433 2587 763503420 763503572 1.330000e-54 224.0
15 TraesCS3B01G163200 chr1B 92.978 826 41 6 2603 3412 603756451 603757275 0.000000e+00 1188.0
16 TraesCS3B01G163200 chr1B 91.379 812 32 5 2602 3407 673171204 673170425 0.000000e+00 1077.0
17 TraesCS3B01G163200 chr7B 90.931 816 58 3 2603 3412 551611252 551610447 0.000000e+00 1083.0
18 TraesCS3B01G163200 chr7B 99.614 259 1 0 3413 3671 127244701 127244443 1.190000e-129 473.0
19 TraesCS3B01G163200 chr7B 99.614 259 1 0 3413 3671 127252295 127252037 1.190000e-129 473.0
20 TraesCS3B01G163200 chr7B 82.110 218 36 3 5 220 739484380 739484596 2.250000e-42 183.0
21 TraesCS3B01G163200 chr4A 90.909 814 40 2 2605 3412 646134776 646133991 0.000000e+00 1062.0
22 TraesCS3B01G163200 chr4A 85.659 516 52 13 2602 3116 736036320 736036814 1.170000e-144 523.0
23 TraesCS3B01G163200 chr4A 83.516 91 13 2 250 339 483386764 483386853 2.350000e-12 84.2
24 TraesCS3B01G163200 chr2A 82.328 962 110 37 925 1833 753439377 753440331 0.000000e+00 780.0
25 TraesCS3B01G163200 chr2A 98.507 268 3 1 3405 3671 697742456 697742723 4.290000e-129 472.0
26 TraesCS3B01G163200 chr2A 86.957 276 36 0 1926 2201 753440651 753440926 9.900000e-81 311.0
27 TraesCS3B01G163200 chr2A 92.903 155 11 0 2433 2587 753440979 753441133 3.690000e-55 226.0
28 TraesCS3B01G163200 chr3D 92.843 503 29 1 779 1281 109739977 109739482 0.000000e+00 723.0
29 TraesCS3B01G163200 chr3D 91.885 419 18 5 1820 2225 109739483 109739068 4.110000e-159 571.0
30 TraesCS3B01G163200 chr3D 90.339 383 17 10 2229 2602 109738990 109738619 5.510000e-133 484.0
31 TraesCS3B01G163200 chr2D 85.877 701 74 15 922 1602 621750286 621750981 0.000000e+00 723.0
32 TraesCS3B01G163200 chr2D 92.258 155 12 0 2433 2587 621751921 621752075 1.720000e-53 220.0
33 TraesCS3B01G163200 chr2D 76.301 173 38 3 1102 1271 580267009 580266837 5.050000e-14 89.8
34 TraesCS3B01G163200 chr5A 83.893 745 92 17 1 730 501882900 501883631 0.000000e+00 686.0
35 TraesCS3B01G163200 chr5A 99.614 259 1 0 3413 3671 109178024 109177766 1.190000e-129 473.0
36 TraesCS3B01G163200 chr5A 99.614 259 1 0 3413 3671 250421962 250422220 1.190000e-129 473.0
37 TraesCS3B01G163200 chr6D 78.756 965 134 37 925 1832 1561741 1560791 6.830000e-162 580.0
38 TraesCS3B01G163200 chr6D 80.887 293 44 3 384 675 62973073 62972792 1.720000e-53 220.0
39 TraesCS3B01G163200 chr6D 86.928 153 20 0 2435 2587 1560312 1560160 4.870000e-39 172.0
40 TraesCS3B01G163200 chr6A 78.881 947 135 37 925 1832 1090534 1091454 6.830000e-162 580.0
41 TraesCS3B01G163200 chrUn 99.614 259 1 0 3413 3671 473046084 473046342 1.190000e-129 473.0
42 TraesCS3B01G163200 chr4B 99.240 263 1 1 3409 3671 438151846 438152107 1.190000e-129 473.0
43 TraesCS3B01G163200 chr7A 85.714 210 24 3 249 456 6098785 6098580 2.220000e-52 217.0
44 TraesCS3B01G163200 chr4D 84.848 66 8 2 2 67 131274625 131274688 8.510000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G163200 chr3B 160821906 160825576 3670 True 6780.000000 6780 100.0000 1 3671 1 chr3B.!!$R2 3670
1 TraesCS3B01G163200 chr3B 52707764 52708578 814 True 1362.000000 1362 96.8140 2598 3412 1 chr3B.!!$R1 814
2 TraesCS3B01G163200 chr3A 120691964 120693882 1918 False 1022.500000 1583 88.2100 777 2602 2 chr3A.!!$F1 1825
3 TraesCS3B01G163200 chr5B 148993942 148994752 810 True 1387.000000 1387 97.5340 2602 3412 1 chr5B.!!$R1 810
4 TraesCS3B01G163200 chr5B 70966253 70966908 655 False 926.000000 926 92.1800 2755 3412 1 chr5B.!!$F1 657
5 TraesCS3B01G163200 chr2B 154850566 154851375 809 True 1386.000000 1386 97.5310 2603 3412 1 chr2B.!!$R1 809
6 TraesCS3B01G163200 chr2B 763498211 763498910 699 False 664.000000 664 84.4190 925 1602 1 chr2B.!!$F1 677
7 TraesCS3B01G163200 chr1B 603756451 603757275 824 False 1188.000000 1188 92.9780 2603 3412 1 chr1B.!!$F1 809
8 TraesCS3B01G163200 chr1B 673170425 673171204 779 True 1077.000000 1077 91.3790 2602 3407 1 chr1B.!!$R1 805
9 TraesCS3B01G163200 chr7B 551610447 551611252 805 True 1083.000000 1083 90.9310 2603 3412 1 chr7B.!!$R3 809
10 TraesCS3B01G163200 chr4A 646133991 646134776 785 True 1062.000000 1062 90.9090 2605 3412 1 chr4A.!!$R1 807
11 TraesCS3B01G163200 chr2A 753439377 753441133 1756 False 439.000000 780 87.3960 925 2587 3 chr2A.!!$F2 1662
12 TraesCS3B01G163200 chr3D 109738619 109739977 1358 True 592.666667 723 91.6890 779 2602 3 chr3D.!!$R1 1823
13 TraesCS3B01G163200 chr2D 621750286 621752075 1789 False 471.500000 723 89.0675 922 2587 2 chr2D.!!$F1 1665
14 TraesCS3B01G163200 chr5A 501882900 501883631 731 False 686.000000 686 83.8930 1 730 1 chr5A.!!$F2 729
15 TraesCS3B01G163200 chr6D 1560160 1561741 1581 True 376.000000 580 82.8420 925 2587 2 chr6D.!!$R2 1662
16 TraesCS3B01G163200 chr6A 1090534 1091454 920 False 580.000000 580 78.8810 925 1832 1 chr6A.!!$F1 907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 710 0.034059 GTGGACAGATATGCGGGAGG 59.966 60.0 0.0 0.0 0.00 4.30 F
1819 1930 0.106469 TCGTAGGAGCCATCTCAGCT 60.106 55.0 0.0 0.0 45.23 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1948 0.108662 TGTCATGTGCTGCTACGGAG 60.109 55.0 0.0 0.0 0.0 4.63 R
3414 3932 0.103572 GCTTAAGTATCCGGGCGTCA 59.896 55.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.154131 CCTCTATCGATCTGCGGCG 60.154 63.158 0.00 0.51 41.33 6.46
42 43 1.202382 CGGTCCGGACATACTTTCTCC 60.202 57.143 34.40 13.32 0.00 3.71
45 46 0.822164 CCGGACATACTTTCTCCCGT 59.178 55.000 0.00 0.00 35.61 5.28
49 50 4.110482 CGGACATACTTTCTCCCGTAAAG 58.890 47.826 0.00 0.00 39.38 1.85
61 62 1.131826 CGTAAAGCGGAGGCAAACG 59.868 57.895 0.00 0.00 43.41 3.60
68 69 3.961414 GGAGGCAAACGTGGGGGA 61.961 66.667 0.00 0.00 0.00 4.81
69 70 2.359975 GAGGCAAACGTGGGGGAG 60.360 66.667 0.00 0.00 0.00 4.30
72 73 2.265904 GGCAAACGTGGGGGAGTTC 61.266 63.158 0.00 0.00 0.00 3.01
73 74 1.228154 GCAAACGTGGGGGAGTTCT 60.228 57.895 0.00 0.00 0.00 3.01
74 75 1.515521 GCAAACGTGGGGGAGTTCTG 61.516 60.000 0.00 0.00 0.00 3.02
75 76 1.228154 AAACGTGGGGGAGTTCTGC 60.228 57.895 0.00 0.00 0.00 4.26
79 80 2.528127 TGGGGGAGTTCTGCGGAA 60.528 61.111 3.13 3.13 0.00 4.30
80 81 2.150719 TGGGGGAGTTCTGCGGAAA 61.151 57.895 10.18 0.00 32.81 3.13
81 82 1.303282 GGGGGAGTTCTGCGGAAAT 59.697 57.895 10.18 9.17 32.81 2.17
82 83 0.748367 GGGGGAGTTCTGCGGAAATC 60.748 60.000 24.13 24.13 43.30 2.17
121 122 0.881159 CCAAAAGTCGCCACGTACCA 60.881 55.000 0.00 0.00 0.00 3.25
133 134 0.595095 ACGTACCACACCTCTTCGTC 59.405 55.000 0.00 0.00 0.00 4.20
135 136 0.963962 GTACCACACCTCTTCGTCCA 59.036 55.000 0.00 0.00 0.00 4.02
140 141 1.273606 CACACCTCTTCGTCCAGATGT 59.726 52.381 0.00 0.00 0.00 3.06
160 162 2.100916 GTCGGAAGGCTAGCATGTTAGA 59.899 50.000 19.62 5.08 0.00 2.10
200 202 6.641723 GCATTTGGCAAAAACTTTGCAAATAT 59.358 30.769 23.41 12.13 46.58 1.28
206 208 7.041508 TGGCAAAAACTTTGCAAATATAGTTGG 60.042 33.333 21.82 7.86 46.58 3.77
243 251 7.561356 AAGGTTACTTCTTGCCATTAGCATTAT 59.439 33.333 0.00 0.00 41.98 1.28
272 280 5.049828 GTGATTAGTATTTGGGCATTTGGC 58.950 41.667 0.00 0.00 43.74 4.52
283 291 2.738013 GCATTTGGCAGAAGCTTTCT 57.262 45.000 0.00 0.00 43.97 2.52
303 311 9.762933 GCTTTCTAAATATATTTGGGCATTTGA 57.237 29.630 18.98 0.00 0.00 2.69
305 313 9.743057 TTTCTAAATATATTTGGGCATTTGACG 57.257 29.630 18.98 0.00 0.00 4.35
343 351 7.110043 TGCCATATGATTAGCATTTGACAAA 57.890 32.000 3.65 2.48 37.93 2.83
346 354 9.048446 GCCATATGATTAGCATTTGACAAAATT 57.952 29.630 3.65 0.00 37.93 1.82
448 456 4.298332 CGGAAGGTTTGAAAATGACCAAG 58.702 43.478 0.00 0.00 35.89 3.61
456 464 5.815233 TTGAAAATGACCAAGCCCATTTA 57.185 34.783 0.00 0.00 40.78 1.40
463 471 1.181786 CCAAGCCCATTTAGCGGAAA 58.818 50.000 0.00 0.00 34.64 3.13
474 482 5.123979 CCATTTAGCGGAAAGAAGCTAGTTT 59.876 40.000 0.00 0.00 45.31 2.66
510 518 3.877508 GCTATCTTTGGCGGAAACTACAT 59.122 43.478 0.00 0.00 0.00 2.29
513 521 2.817258 TCTTTGGCGGAAACTACATTGG 59.183 45.455 0.00 0.00 0.00 3.16
545 553 0.955905 TAGCCTTCCGCCAAACAAAC 59.044 50.000 0.00 0.00 38.78 2.93
547 555 0.179097 GCCTTCCGCCAAACAAACAA 60.179 50.000 0.00 0.00 0.00 2.83
555 563 2.779471 CGCCAAACAAACAACGACTAAC 59.221 45.455 0.00 0.00 0.00 2.34
558 566 4.735283 GCCAAACAAACAACGACTAACCAT 60.735 41.667 0.00 0.00 0.00 3.55
565 573 7.412063 ACAAACAACGACTAACCATAGTTTTC 58.588 34.615 0.00 0.00 42.47 2.29
566 574 7.281549 ACAAACAACGACTAACCATAGTTTTCT 59.718 33.333 0.00 0.00 42.47 2.52
570 578 9.328845 ACAACGACTAACCATAGTTTTCTAAAA 57.671 29.630 0.00 0.00 42.47 1.52
580 588 9.533831 ACCATAGTTTTCTAAAAGGAATCATGT 57.466 29.630 0.00 0.00 35.90 3.21
593 601 4.081087 AGGAATCATGTAGTTAGTTGGCGT 60.081 41.667 0.00 0.00 0.00 5.68
607 615 9.240159 AGTTAGTTGGCGTTTAAAATTTAACAG 57.760 29.630 0.00 0.00 0.00 3.16
614 622 6.138088 GCGTTTAAAATTTAACAGAGACGGT 58.862 36.000 16.35 0.00 0.00 4.83
624 636 4.602340 AACAGAGACGGTCATTTACAGT 57.398 40.909 11.27 0.00 39.39 3.55
627 639 5.467705 ACAGAGACGGTCATTTACAGTTAC 58.532 41.667 11.27 0.00 36.57 2.50
629 641 4.456911 AGAGACGGTCATTTACAGTTACGA 59.543 41.667 11.27 0.00 36.57 3.43
637 649 6.537301 GGTCATTTACAGTTACGATTGGATGA 59.463 38.462 0.00 0.00 0.00 2.92
644 656 3.114065 GTTACGATTGGATGACGGTCTC 58.886 50.000 9.88 4.59 0.00 3.36
645 657 1.182667 ACGATTGGATGACGGTCTCA 58.817 50.000 9.88 2.84 0.00 3.27
646 658 1.757118 ACGATTGGATGACGGTCTCAT 59.243 47.619 9.88 0.00 42.84 2.90
648 660 1.869767 GATTGGATGACGGTCTCATGC 59.130 52.381 9.88 2.21 45.70 4.06
653 665 0.249615 ATGACGGTCTCATGCATCCG 60.250 55.000 19.73 19.73 46.98 4.18
674 686 2.526046 CCCACGGACTGGTCCCTTT 61.526 63.158 13.41 0.00 46.96 3.11
676 688 0.688487 CCACGGACTGGTCCCTTTTA 59.312 55.000 13.41 0.00 46.96 1.52
689 701 3.196254 GTCCCTTTTACCGTGGACAGATA 59.804 47.826 0.00 0.00 45.29 1.98
690 702 4.035112 TCCCTTTTACCGTGGACAGATAT 58.965 43.478 0.00 0.00 0.00 1.63
692 704 3.560068 CCTTTTACCGTGGACAGATATGC 59.440 47.826 0.00 0.00 0.00 3.14
693 705 2.502213 TTACCGTGGACAGATATGCG 57.498 50.000 0.00 0.00 0.00 4.73
694 706 0.671796 TACCGTGGACAGATATGCGG 59.328 55.000 3.04 3.04 44.10 5.69
696 708 1.739667 CGTGGACAGATATGCGGGA 59.260 57.895 0.00 0.00 0.00 5.14
697 709 0.319040 CGTGGACAGATATGCGGGAG 60.319 60.000 0.00 0.00 0.00 4.30
698 710 0.034059 GTGGACAGATATGCGGGAGG 59.966 60.000 0.00 0.00 0.00 4.30
700 712 1.048601 GGACAGATATGCGGGAGGAA 58.951 55.000 0.00 0.00 0.00 3.36
701 713 1.416401 GGACAGATATGCGGGAGGAAA 59.584 52.381 0.00 0.00 0.00 3.13
702 714 2.484889 GACAGATATGCGGGAGGAAAC 58.515 52.381 0.00 0.00 0.00 2.78
704 716 3.305720 ACAGATATGCGGGAGGAAACTA 58.694 45.455 0.00 0.00 44.43 2.24
705 717 3.322254 ACAGATATGCGGGAGGAAACTAG 59.678 47.826 0.00 0.00 44.43 2.57
706 718 2.300437 AGATATGCGGGAGGAAACTAGC 59.700 50.000 0.00 0.00 44.43 3.42
707 719 0.387929 TATGCGGGAGGAAACTAGCG 59.612 55.000 0.00 0.00 44.43 4.26
708 720 2.202892 GCGGGAGGAAACTAGCGG 60.203 66.667 0.00 0.00 44.43 5.52
709 721 2.499685 CGGGAGGAAACTAGCGGG 59.500 66.667 0.00 0.00 44.43 6.13
710 722 2.356780 CGGGAGGAAACTAGCGGGT 61.357 63.158 0.00 0.00 44.43 5.28
711 723 1.896122 CGGGAGGAAACTAGCGGGTT 61.896 60.000 0.00 0.00 44.43 4.11
712 724 0.392595 GGGAGGAAACTAGCGGGTTG 60.393 60.000 0.00 0.00 44.43 3.77
713 725 1.025113 GGAGGAAACTAGCGGGTTGC 61.025 60.000 0.00 0.00 44.43 4.17
714 726 0.321298 GAGGAAACTAGCGGGTTGCA 60.321 55.000 5.09 0.00 45.41 4.08
715 727 1.679032 GAGGAAACTAGCGGGTTGCAT 60.679 52.381 5.09 0.00 45.41 3.96
716 728 3.825959 GAGGAAACTAGCGGGTTGCATG 61.826 54.545 5.09 0.00 45.41 4.06
722 734 3.667087 GCGGGTTGCATGTGAAGA 58.333 55.556 0.00 0.00 45.45 2.87
723 735 2.183409 GCGGGTTGCATGTGAAGAT 58.817 52.632 0.00 0.00 45.45 2.40
724 736 0.179156 GCGGGTTGCATGTGAAGATG 60.179 55.000 0.00 0.00 45.45 2.90
726 738 0.174162 GGGTTGCATGTGAAGATGCC 59.826 55.000 9.65 0.00 46.98 4.40
727 739 1.180029 GGTTGCATGTGAAGATGCCT 58.820 50.000 9.65 0.00 46.98 4.75
728 740 2.368439 GGTTGCATGTGAAGATGCCTA 58.632 47.619 9.65 0.00 46.98 3.93
729 741 2.754552 GGTTGCATGTGAAGATGCCTAA 59.245 45.455 9.65 0.00 46.98 2.69
730 742 3.193267 GGTTGCATGTGAAGATGCCTAAA 59.807 43.478 9.65 0.00 46.98 1.85
731 743 4.418392 GTTGCATGTGAAGATGCCTAAAG 58.582 43.478 9.65 0.00 46.98 1.85
732 744 3.018856 TGCATGTGAAGATGCCTAAAGG 58.981 45.455 9.65 0.00 46.98 3.11
733 745 3.282021 GCATGTGAAGATGCCTAAAGGA 58.718 45.455 0.00 0.00 42.57 3.36
734 746 3.314635 GCATGTGAAGATGCCTAAAGGAG 59.685 47.826 0.00 0.00 42.57 3.69
735 747 4.521146 CATGTGAAGATGCCTAAAGGAGT 58.479 43.478 0.00 0.00 37.39 3.85
736 748 5.674525 CATGTGAAGATGCCTAAAGGAGTA 58.325 41.667 0.00 0.00 37.39 2.59
737 749 5.755409 TGTGAAGATGCCTAAAGGAGTAA 57.245 39.130 0.00 0.00 37.39 2.24
738 750 6.313519 TGTGAAGATGCCTAAAGGAGTAAT 57.686 37.500 0.00 0.00 37.39 1.89
739 751 7.432148 TGTGAAGATGCCTAAAGGAGTAATA 57.568 36.000 0.00 0.00 37.39 0.98
740 752 7.857456 TGTGAAGATGCCTAAAGGAGTAATAA 58.143 34.615 0.00 0.00 37.39 1.40
741 753 8.494433 TGTGAAGATGCCTAAAGGAGTAATAAT 58.506 33.333 0.00 0.00 37.39 1.28
742 754 8.778358 GTGAAGATGCCTAAAGGAGTAATAATG 58.222 37.037 0.00 0.00 37.39 1.90
743 755 7.445402 TGAAGATGCCTAAAGGAGTAATAATGC 59.555 37.037 0.00 0.00 37.39 3.56
744 756 7.084268 AGATGCCTAAAGGAGTAATAATGCT 57.916 36.000 0.00 0.00 37.39 3.79
745 757 6.939163 AGATGCCTAAAGGAGTAATAATGCTG 59.061 38.462 0.00 0.00 37.39 4.41
746 758 4.821805 TGCCTAAAGGAGTAATAATGCTGC 59.178 41.667 0.00 0.00 37.39 5.25
747 759 5.066593 GCCTAAAGGAGTAATAATGCTGCT 58.933 41.667 0.00 0.00 41.55 4.24
748 760 5.049129 GCCTAAAGGAGTAATAATGCTGCTG 60.049 44.000 0.00 0.00 38.95 4.41
749 761 6.058183 CCTAAAGGAGTAATAATGCTGCTGT 58.942 40.000 0.00 0.00 38.95 4.40
750 762 7.217200 CCTAAAGGAGTAATAATGCTGCTGTA 58.783 38.462 0.00 0.00 38.95 2.74
751 763 7.715249 CCTAAAGGAGTAATAATGCTGCTGTAA 59.285 37.037 0.00 0.00 38.95 2.41
752 764 9.277783 CTAAAGGAGTAATAATGCTGCTGTAAT 57.722 33.333 0.00 0.00 38.95 1.89
754 766 9.799106 AAAGGAGTAATAATGCTGCTGTAATAT 57.201 29.630 0.00 0.00 38.95 1.28
757 769 9.319143 GGAGTAATAATGCTGCTGTAATATAGG 57.681 37.037 0.00 0.00 0.00 2.57
758 770 8.723942 AGTAATAATGCTGCTGTAATATAGGC 57.276 34.615 0.00 0.00 0.00 3.93
759 771 8.321353 AGTAATAATGCTGCTGTAATATAGGCA 58.679 33.333 0.00 0.00 0.00 4.75
760 772 9.113838 GTAATAATGCTGCTGTAATATAGGCAT 57.886 33.333 0.00 0.00 40.04 4.40
761 773 7.798596 ATAATGCTGCTGTAATATAGGCATC 57.201 36.000 0.00 0.00 37.85 3.91
762 774 3.942829 TGCTGCTGTAATATAGGCATCC 58.057 45.455 0.00 0.00 34.12 3.51
763 775 3.327464 TGCTGCTGTAATATAGGCATCCA 59.673 43.478 0.00 0.00 34.12 3.41
764 776 4.202451 TGCTGCTGTAATATAGGCATCCAA 60.202 41.667 0.00 0.00 34.12 3.53
765 777 4.761739 GCTGCTGTAATATAGGCATCCAAA 59.238 41.667 0.00 0.00 34.12 3.28
766 778 5.241506 GCTGCTGTAATATAGGCATCCAAAA 59.758 40.000 0.00 0.00 34.12 2.44
767 779 6.633500 TGCTGTAATATAGGCATCCAAAAC 57.367 37.500 0.00 0.00 0.00 2.43
768 780 6.364701 TGCTGTAATATAGGCATCCAAAACT 58.635 36.000 0.00 0.00 0.00 2.66
769 781 6.833416 TGCTGTAATATAGGCATCCAAAACTT 59.167 34.615 0.00 0.00 0.00 2.66
770 782 7.341769 TGCTGTAATATAGGCATCCAAAACTTT 59.658 33.333 0.00 0.00 0.00 2.66
771 783 7.649306 GCTGTAATATAGGCATCCAAAACTTTG 59.351 37.037 0.00 0.00 37.90 2.77
801 814 1.355720 ACAAGGGCAAGAGCTTGGTAT 59.644 47.619 11.78 0.00 40.74 2.73
862 880 4.724279 AATCCAAGTAAACCTGTCCACT 57.276 40.909 0.00 0.00 0.00 4.00
863 881 3.485463 TCCAAGTAAACCTGTCCACTG 57.515 47.619 0.00 0.00 0.00 3.66
864 882 2.775384 TCCAAGTAAACCTGTCCACTGT 59.225 45.455 0.00 0.00 0.00 3.55
865 883 3.139077 CCAAGTAAACCTGTCCACTGTC 58.861 50.000 0.00 0.00 0.00 3.51
866 884 2.800544 CAAGTAAACCTGTCCACTGTCG 59.199 50.000 0.00 0.00 0.00 4.35
867 885 2.313317 AGTAAACCTGTCCACTGTCGA 58.687 47.619 0.00 0.00 0.00 4.20
868 886 2.296471 AGTAAACCTGTCCACTGTCGAG 59.704 50.000 0.00 0.00 0.00 4.04
920 940 0.742990 CCGCCGATACAAGCAAAGGA 60.743 55.000 0.00 0.00 0.00 3.36
951 971 2.156098 GTACTTGGACATTTCCGCCAA 58.844 47.619 0.00 0.00 46.37 4.52
1050 1076 1.062810 GCCTTCTTCCTCCTCCCTCTA 60.063 57.143 0.00 0.00 0.00 2.43
1053 1079 3.464080 CCTTCTTCCTCCTCCCTCTACTA 59.536 52.174 0.00 0.00 0.00 1.82
1179 1205 2.040544 GCCGGTGTTCCTGGTCATG 61.041 63.158 1.90 0.00 32.67 3.07
1214 1240 1.726533 CCCTACGGCGAGACCTTCTC 61.727 65.000 16.62 0.00 40.06 2.87
1291 1332 4.467198 ACCGTCCTTTGTCTCGAATTAT 57.533 40.909 0.00 0.00 0.00 1.28
1293 1334 3.802685 CCGTCCTTTGTCTCGAATTATCC 59.197 47.826 0.00 0.00 0.00 2.59
1306 1353 7.277981 GTCTCGAATTATCCAGCTTTCAGTTTA 59.722 37.037 0.00 0.00 0.00 2.01
1333 1384 7.342026 TGTTACAGAGAATGCTATAGAAGGTGA 59.658 37.037 3.21 0.00 0.00 4.02
1358 1425 0.398522 ACCATGCCGGGACTGATAGA 60.399 55.000 2.18 0.00 40.22 1.98
1360 1427 2.179427 CCATGCCGGGACTGATAGATA 58.821 52.381 2.18 0.00 0.00 1.98
1361 1428 2.768527 CCATGCCGGGACTGATAGATAT 59.231 50.000 2.18 0.00 0.00 1.63
1362 1429 3.198635 CCATGCCGGGACTGATAGATATT 59.801 47.826 2.18 0.00 0.00 1.28
1363 1430 4.437239 CATGCCGGGACTGATAGATATTC 58.563 47.826 2.18 0.00 0.00 1.75
1443 1511 0.669625 AAGAGCGTAACTTCACCCGC 60.670 55.000 0.00 0.00 46.07 6.13
1608 1676 1.799121 GCCACGAGGTACGACGAAC 60.799 63.158 15.15 0.00 45.77 3.95
1609 1677 1.510623 CCACGAGGTACGACGAACG 60.511 63.158 15.15 0.00 45.77 3.95
1610 1678 1.492873 CACGAGGTACGACGAACGA 59.507 57.895 15.15 0.00 45.77 3.85
1612 1680 1.576122 CGAGGTACGACGAACGACG 60.576 63.158 15.65 15.65 45.77 5.12
1628 1735 1.063806 GACGTAGCCATGATCGATGC 58.936 55.000 0.54 0.00 0.00 3.91
1630 1737 1.001293 ACGTAGCCATGATCGATGCAT 59.999 47.619 0.54 0.00 0.00 3.96
1631 1738 1.392510 CGTAGCCATGATCGATGCATG 59.607 52.381 21.29 21.29 42.07 4.06
1633 1740 0.536460 AGCCATGATCGATGCATGCA 60.536 50.000 25.04 25.04 41.30 3.96
1635 1742 1.235724 CCATGATCGATGCATGCAGT 58.764 50.000 26.69 14.02 41.30 4.40
1636 1743 1.197036 CCATGATCGATGCATGCAGTC 59.803 52.381 26.69 20.23 41.30 3.51
1637 1744 1.197036 CATGATCGATGCATGCAGTCC 59.803 52.381 26.69 15.82 37.00 3.85
1641 1748 1.596203 CGATGCATGCAGTCCCGAT 60.596 57.895 26.69 7.01 0.00 4.18
1642 1749 1.563435 CGATGCATGCAGTCCCGATC 61.563 60.000 26.69 15.18 0.00 3.69
1643 1750 1.563435 GATGCATGCAGTCCCGATCG 61.563 60.000 26.69 8.51 0.00 3.69
1645 1752 1.953138 GCATGCAGTCCCGATCGAG 60.953 63.158 18.66 2.49 0.00 4.04
1650 1757 0.318275 GCAGTCCCGATCGAGTGATC 60.318 60.000 18.66 5.45 46.24 2.92
1666 1773 3.504906 AGTGATCTGGCTGACAAATTGTG 59.495 43.478 2.20 0.00 0.00 3.33
1681 1792 6.758254 ACAAATTGTGGTTTTATCTTCAGGG 58.242 36.000 0.00 0.00 0.00 4.45
1720 1831 2.371510 GAGATCCCTCTTCTTCATGGGG 59.628 54.545 0.00 0.00 40.05 4.96
1766 1877 4.122149 TCATGGCCGCCGGGAAAT 62.122 61.111 4.77 0.00 34.06 2.17
1805 1916 2.159841 TCGTACGTTCCGAAAGTCGTAG 60.160 50.000 16.05 0.00 38.40 3.51
1819 1930 0.106469 TCGTAGGAGCCATCTCAGCT 60.106 55.000 0.00 0.00 45.23 4.24
1836 1947 2.028125 GCTGGCGCTGAGGTATGGTA 62.028 60.000 7.64 0.00 0.00 3.25
1837 1948 0.249489 CTGGCGCTGAGGTATGGTAC 60.249 60.000 7.64 0.00 0.00 3.34
1838 1949 0.686441 TGGCGCTGAGGTATGGTACT 60.686 55.000 7.64 0.00 0.00 2.73
1872 2067 7.011109 AGCACATGACAAATAGAATTACGTACC 59.989 37.037 0.00 0.00 0.00 3.34
1873 2068 7.201574 GCACATGACAAATAGAATTACGTACCA 60.202 37.037 0.00 0.00 0.00 3.25
1875 2070 9.221933 ACATGACAAATAGAATTACGTACCAAA 57.778 29.630 0.00 0.00 0.00 3.28
1948 2332 3.412879 GAGGGAGCGAGGTACGTGC 62.413 68.421 0.00 0.00 44.60 5.34
2124 2509 1.067582 GCTCCGGATCAAGTACCCG 59.932 63.158 3.57 0.97 42.64 5.28
2208 2593 2.368655 AATTCGGTAAGCGTTACGGT 57.631 45.000 2.83 2.83 40.00 4.83
2225 2610 1.743995 GTGCCCGCGGTTAGAATGT 60.744 57.895 26.12 0.00 0.00 2.71
2227 2612 0.460635 TGCCCGCGGTTAGAATGTAC 60.461 55.000 26.12 0.41 0.00 2.90
2335 2832 5.339008 TCTTAAACATATCGTGTCAGCCT 57.661 39.130 0.00 0.00 41.14 4.58
2343 2840 5.008811 ACATATCGTGTCAGCCTAGTAGTTC 59.991 44.000 0.00 0.00 35.77 3.01
2348 2845 6.531923 TCGTGTCAGCCTAGTAGTTCTATAT 58.468 40.000 0.00 0.00 0.00 0.86
2349 2846 7.674120 TCGTGTCAGCCTAGTAGTTCTATATA 58.326 38.462 0.00 0.00 0.00 0.86
2350 2847 8.319881 TCGTGTCAGCCTAGTAGTTCTATATAT 58.680 37.037 0.00 0.00 0.00 0.86
2351 2848 9.597170 CGTGTCAGCCTAGTAGTTCTATATATA 57.403 37.037 0.00 0.00 0.00 0.86
2353 2850 9.597170 TGTCAGCCTAGTAGTTCTATATATACG 57.403 37.037 0.00 0.00 0.00 3.06
2354 2851 9.814899 GTCAGCCTAGTAGTTCTATATATACGA 57.185 37.037 0.00 0.00 0.00 3.43
2356 2853 9.820725 CAGCCTAGTAGTTCTATATATACGAGT 57.179 37.037 0.00 0.00 0.00 4.18
2429 2931 0.588252 CTAATGCCGAGCGGAATTGG 59.412 55.000 22.27 16.75 43.17 3.16
2671 3173 6.821616 AGACTACCTCTGGATCAATTTGAT 57.178 37.500 11.64 11.64 40.34 2.57
2805 3308 1.577328 AACGGATTTCCTGCAGTGCG 61.577 55.000 13.81 13.44 0.00 5.34
2806 3309 1.741401 CGGATTTCCTGCAGTGCGA 60.741 57.895 13.81 0.00 0.00 5.10
2807 3310 1.699656 CGGATTTCCTGCAGTGCGAG 61.700 60.000 13.81 8.94 0.00 5.03
3060 3577 2.334971 TGACGACGAATTTCACGCTA 57.665 45.000 0.00 1.41 0.00 4.26
3206 3723 2.313342 TCTGCCCTCCTCTTCTACTCTT 59.687 50.000 0.00 0.00 0.00 2.85
3221 3738 1.064060 ACTCTTTGCGTGCAAGAACAC 59.936 47.619 2.99 0.00 37.24 3.32
3314 3832 6.428159 TGCTGAAGTTGAAGAAAAGATAGACC 59.572 38.462 0.00 0.00 0.00 3.85
3412 3930 4.689612 ATGTGTTCTCTGTTGTGGTAGT 57.310 40.909 0.00 0.00 0.00 2.73
3413 3931 3.792401 TGTGTTCTCTGTTGTGGTAGTG 58.208 45.455 0.00 0.00 0.00 2.74
3414 3932 3.196901 TGTGTTCTCTGTTGTGGTAGTGT 59.803 43.478 0.00 0.00 0.00 3.55
3415 3933 3.555956 GTGTTCTCTGTTGTGGTAGTGTG 59.444 47.826 0.00 0.00 0.00 3.82
3416 3934 3.449377 TGTTCTCTGTTGTGGTAGTGTGA 59.551 43.478 0.00 0.00 0.00 3.58
3417 3935 3.728076 TCTCTGTTGTGGTAGTGTGAC 57.272 47.619 0.00 0.00 0.00 3.67
3418 3936 2.034179 TCTCTGTTGTGGTAGTGTGACG 59.966 50.000 0.00 0.00 0.00 4.35
3419 3937 0.859232 CTGTTGTGGTAGTGTGACGC 59.141 55.000 0.00 0.00 0.00 5.19
3420 3938 0.531090 TGTTGTGGTAGTGTGACGCC 60.531 55.000 0.00 0.00 0.00 5.68
3421 3939 1.070105 TTGTGGTAGTGTGACGCCC 59.930 57.895 0.00 0.00 0.00 6.13
3422 3940 2.431942 GTGGTAGTGTGACGCCCG 60.432 66.667 0.00 0.00 0.00 6.13
3423 3941 3.687102 TGGTAGTGTGACGCCCGG 61.687 66.667 0.00 0.00 0.00 5.73
3424 3942 3.376078 GGTAGTGTGACGCCCGGA 61.376 66.667 0.73 0.00 0.00 5.14
3425 3943 2.718073 GGTAGTGTGACGCCCGGAT 61.718 63.158 0.73 0.00 0.00 4.18
3426 3944 1.386525 GGTAGTGTGACGCCCGGATA 61.387 60.000 0.73 0.00 0.00 2.59
3427 3945 0.248784 GTAGTGTGACGCCCGGATAC 60.249 60.000 0.73 0.00 0.00 2.24
3428 3946 0.394762 TAGTGTGACGCCCGGATACT 60.395 55.000 0.73 0.00 0.00 2.12
3429 3947 1.217244 GTGTGACGCCCGGATACTT 59.783 57.895 0.73 0.00 0.00 2.24
3430 3948 0.457035 GTGTGACGCCCGGATACTTA 59.543 55.000 0.73 0.00 0.00 2.24
3431 3949 1.135024 GTGTGACGCCCGGATACTTAA 60.135 52.381 0.73 0.00 0.00 1.85
3432 3950 1.135527 TGTGACGCCCGGATACTTAAG 59.864 52.381 0.73 0.00 0.00 1.85
3433 3951 0.103572 TGACGCCCGGATACTTAAGC 59.896 55.000 0.73 0.00 0.00 3.09
3434 3952 0.388294 GACGCCCGGATACTTAAGCT 59.612 55.000 0.73 0.00 0.00 3.74
3435 3953 1.610522 GACGCCCGGATACTTAAGCTA 59.389 52.381 0.73 0.00 0.00 3.32
3436 3954 1.339291 ACGCCCGGATACTTAAGCTAC 59.661 52.381 0.73 0.00 0.00 3.58
3437 3955 1.338973 CGCCCGGATACTTAAGCTACA 59.661 52.381 0.73 0.00 0.00 2.74
3438 3956 2.607282 CGCCCGGATACTTAAGCTACAG 60.607 54.545 0.73 0.00 0.00 2.74
3439 3957 2.364647 GCCCGGATACTTAAGCTACAGT 59.635 50.000 0.73 3.36 0.00 3.55
3440 3958 3.571401 GCCCGGATACTTAAGCTACAGTA 59.429 47.826 0.73 7.26 0.00 2.74
3441 3959 4.038402 GCCCGGATACTTAAGCTACAGTAA 59.962 45.833 0.73 0.00 0.00 2.24
3442 3960 5.452356 GCCCGGATACTTAAGCTACAGTAAA 60.452 44.000 0.73 0.00 0.00 2.01
3443 3961 5.981915 CCCGGATACTTAAGCTACAGTAAAC 59.018 44.000 0.73 6.63 0.00 2.01
3444 3962 5.981915 CCGGATACTTAAGCTACAGTAAACC 59.018 44.000 0.00 12.37 0.00 3.27
3445 3963 6.406177 CCGGATACTTAAGCTACAGTAAACCA 60.406 42.308 19.80 2.07 31.69 3.67
3446 3964 6.474751 CGGATACTTAAGCTACAGTAAACCAC 59.525 42.308 19.80 8.68 31.69 4.16
3447 3965 7.554211 GGATACTTAAGCTACAGTAAACCACT 58.446 38.462 17.48 2.36 38.32 4.00
3459 3977 5.897377 AGTAAACCACTGTTAATGATGCC 57.103 39.130 0.00 0.00 35.62 4.40
3460 3978 5.321102 AGTAAACCACTGTTAATGATGCCA 58.679 37.500 0.00 0.00 35.62 4.92
3461 3979 4.519540 AAACCACTGTTAATGATGCCAC 57.480 40.909 0.00 0.00 33.30 5.01
3462 3980 2.083774 ACCACTGTTAATGATGCCACG 58.916 47.619 0.00 0.00 0.00 4.94
3463 3981 2.083774 CCACTGTTAATGATGCCACGT 58.916 47.619 0.00 0.00 0.00 4.49
3464 3982 2.095853 CCACTGTTAATGATGCCACGTC 59.904 50.000 0.00 0.00 0.00 4.34
3465 3983 2.741517 CACTGTTAATGATGCCACGTCA 59.258 45.455 0.00 0.00 0.00 4.35
3466 3984 3.002791 ACTGTTAATGATGCCACGTCAG 58.997 45.455 0.00 0.00 0.00 3.51
3467 3985 1.737236 TGTTAATGATGCCACGTCAGC 59.263 47.619 0.04 0.04 0.00 4.26
3468 3986 1.737236 GTTAATGATGCCACGTCAGCA 59.263 47.619 11.88 11.88 45.94 4.41
3469 3987 1.368641 TAATGATGCCACGTCAGCAC 58.631 50.000 11.74 7.18 44.40 4.40
3470 3988 0.606130 AATGATGCCACGTCAGCACA 60.606 50.000 11.74 11.80 44.40 4.57
3471 3989 0.606130 ATGATGCCACGTCAGCACAA 60.606 50.000 11.74 4.31 44.40 3.33
3472 3990 0.606130 TGATGCCACGTCAGCACAAT 60.606 50.000 11.74 0.00 44.40 2.71
3473 3991 0.523072 GATGCCACGTCAGCACAATT 59.477 50.000 11.74 0.00 44.40 2.32
3474 3992 1.737236 GATGCCACGTCAGCACAATTA 59.263 47.619 11.74 0.00 44.40 1.40
3475 3993 0.871722 TGCCACGTCAGCACAATTAC 59.128 50.000 5.70 0.00 34.69 1.89
3476 3994 1.156736 GCCACGTCAGCACAATTACT 58.843 50.000 2.25 0.00 0.00 2.24
3477 3995 1.135972 GCCACGTCAGCACAATTACTG 60.136 52.381 2.25 0.00 35.15 2.74
3478 3996 2.143122 CCACGTCAGCACAATTACTGT 58.857 47.619 0.00 0.00 39.56 3.55
3479 3997 2.548057 CCACGTCAGCACAATTACTGTT 59.452 45.455 0.00 0.00 35.47 3.16
3480 3998 3.544651 CACGTCAGCACAATTACTGTTG 58.455 45.455 0.00 0.00 35.47 3.33
3481 3999 2.032030 ACGTCAGCACAATTACTGTTGC 60.032 45.455 0.00 0.00 35.47 4.17
3482 4000 2.224079 CGTCAGCACAATTACTGTTGCT 59.776 45.455 0.00 0.00 40.68 3.91
3483 4001 3.431912 CGTCAGCACAATTACTGTTGCTA 59.568 43.478 3.81 0.00 39.12 3.49
3484 4002 4.084066 CGTCAGCACAATTACTGTTGCTAA 60.084 41.667 3.81 0.00 39.12 3.09
3485 4003 5.390885 CGTCAGCACAATTACTGTTGCTAAT 60.391 40.000 3.81 0.00 39.12 1.73
3486 4004 6.024049 GTCAGCACAATTACTGTTGCTAATC 58.976 40.000 3.81 0.00 39.12 1.75
3487 4005 5.939883 TCAGCACAATTACTGTTGCTAATCT 59.060 36.000 3.81 0.00 39.12 2.40
3488 4006 6.092670 TCAGCACAATTACTGTTGCTAATCTC 59.907 38.462 3.81 0.00 39.12 2.75
3489 4007 5.063944 AGCACAATTACTGTTGCTAATCTCG 59.936 40.000 2.27 0.00 39.26 4.04
3490 4008 5.258622 CACAATTACTGTTGCTAATCTCGC 58.741 41.667 0.00 0.00 35.47 5.03
3491 4009 4.032900 ACAATTACTGTTGCTAATCTCGCG 59.967 41.667 0.00 0.00 32.99 5.87
3492 4010 2.933495 TACTGTTGCTAATCTCGCGT 57.067 45.000 5.77 0.00 0.00 6.01
3493 4011 2.080286 ACTGTTGCTAATCTCGCGTT 57.920 45.000 5.77 0.00 0.00 4.84
3494 4012 3.226346 ACTGTTGCTAATCTCGCGTTA 57.774 42.857 5.77 0.00 0.00 3.18
3495 4013 3.179830 ACTGTTGCTAATCTCGCGTTAG 58.820 45.455 5.77 8.34 33.36 2.34
3496 4014 3.179830 CTGTTGCTAATCTCGCGTTAGT 58.820 45.455 5.77 0.00 32.90 2.24
3497 4015 3.581755 TGTTGCTAATCTCGCGTTAGTT 58.418 40.909 5.77 0.00 32.90 2.24
3498 4016 3.611113 TGTTGCTAATCTCGCGTTAGTTC 59.389 43.478 5.77 3.28 32.90 3.01
3499 4017 2.447250 TGCTAATCTCGCGTTAGTTCG 58.553 47.619 5.77 0.00 32.90 3.95
3500 4018 2.096335 TGCTAATCTCGCGTTAGTTCGA 59.904 45.455 5.77 0.00 32.90 3.71
3501 4019 3.103738 GCTAATCTCGCGTTAGTTCGAA 58.896 45.455 5.77 0.00 34.07 3.71
3502 4020 3.545078 GCTAATCTCGCGTTAGTTCGAAA 59.455 43.478 5.77 0.00 34.07 3.46
3503 4021 3.967080 AATCTCGCGTTAGTTCGAAAC 57.033 42.857 5.77 0.00 34.07 2.78
3504 4022 2.693797 TCTCGCGTTAGTTCGAAACT 57.306 45.000 5.77 2.34 45.40 2.66
3505 4023 2.313234 TCTCGCGTTAGTTCGAAACTG 58.687 47.619 5.77 0.00 42.84 3.16
3506 4024 2.031769 TCTCGCGTTAGTTCGAAACTGA 60.032 45.455 5.77 0.00 42.84 3.41
3507 4025 2.915463 CTCGCGTTAGTTCGAAACTGAT 59.085 45.455 5.77 0.00 42.84 2.90
3508 4026 3.311106 TCGCGTTAGTTCGAAACTGATT 58.689 40.909 5.77 0.00 42.84 2.57
3509 4027 3.362831 TCGCGTTAGTTCGAAACTGATTC 59.637 43.478 5.77 0.00 42.84 2.52
3510 4028 3.120616 CGCGTTAGTTCGAAACTGATTCA 59.879 43.478 0.00 0.00 42.84 2.57
3511 4029 4.375606 CGCGTTAGTTCGAAACTGATTCAA 60.376 41.667 0.00 0.00 42.84 2.69
3512 4030 5.437263 GCGTTAGTTCGAAACTGATTCAAA 58.563 37.500 0.00 0.00 42.84 2.69
3513 4031 6.077838 GCGTTAGTTCGAAACTGATTCAAAT 58.922 36.000 0.00 0.00 42.84 2.32
3514 4032 6.577427 GCGTTAGTTCGAAACTGATTCAAATT 59.423 34.615 0.00 0.00 42.84 1.82
3515 4033 7.201157 GCGTTAGTTCGAAACTGATTCAAATTC 60.201 37.037 0.00 0.00 42.84 2.17
3516 4034 7.796660 CGTTAGTTCGAAACTGATTCAAATTCA 59.203 33.333 0.00 0.00 42.84 2.57
3517 4035 9.445786 GTTAGTTCGAAACTGATTCAAATTCAA 57.554 29.630 0.00 3.65 42.84 2.69
3520 4038 9.533253 AGTTCGAAACTGATTCAAATTCAAATT 57.467 25.926 0.00 0.00 41.01 1.82
3521 4039 9.783425 GTTCGAAACTGATTCAAATTCAAATTC 57.217 29.630 0.00 0.00 37.96 2.17
3522 4040 9.526713 TTCGAAACTGATTCAAATTCAAATTCA 57.473 25.926 0.00 0.00 37.96 2.57
3523 4041 9.526713 TCGAAACTGATTCAAATTCAAATTCAA 57.473 25.926 10.15 0.00 37.96 2.69
3538 4056 9.881529 ATTCAAATTCAAAATCAAATCAAACGG 57.118 25.926 0.00 0.00 0.00 4.44
3539 4057 8.430801 TCAAATTCAAAATCAAATCAAACGGT 57.569 26.923 0.00 0.00 0.00 4.83
3540 4058 9.534565 TCAAATTCAAAATCAAATCAAACGGTA 57.465 25.926 0.00 0.00 0.00 4.02
3545 4063 8.934507 TCAAAATCAAATCAAACGGTAAAAGT 57.065 26.923 0.00 0.00 0.00 2.66
3546 4064 9.372369 TCAAAATCAAATCAAACGGTAAAAGTT 57.628 25.926 0.00 0.00 0.00 2.66
3547 4065 9.980780 CAAAATCAAATCAAACGGTAAAAGTTT 57.019 25.926 0.00 0.00 41.90 2.66
3550 4068 8.934507 ATCAAATCAAACGGTAAAAGTTTTCA 57.065 26.923 3.60 0.00 39.50 2.69
3551 4069 8.758633 TCAAATCAAACGGTAAAAGTTTTCAA 57.241 26.923 3.60 0.00 39.50 2.69
3552 4070 9.204570 TCAAATCAAACGGTAAAAGTTTTCAAA 57.795 25.926 3.60 0.00 39.50 2.69
3553 4071 9.980780 CAAATCAAACGGTAAAAGTTTTCAAAT 57.019 25.926 3.60 0.00 39.50 2.32
3581 4099 9.615295 TTAAAACTAAAATATTCGAGTTGTGCC 57.385 29.630 13.07 0.00 32.57 5.01
3582 4100 6.811253 AACTAAAATATTCGAGTTGTGCCA 57.189 33.333 12.03 0.00 31.05 4.92
3583 4101 6.811253 ACTAAAATATTCGAGTTGTGCCAA 57.189 33.333 0.00 0.00 0.00 4.52
3584 4102 7.209471 ACTAAAATATTCGAGTTGTGCCAAA 57.791 32.000 0.00 0.00 0.00 3.28
3585 4103 7.826690 ACTAAAATATTCGAGTTGTGCCAAAT 58.173 30.769 0.00 0.00 0.00 2.32
3586 4104 8.952278 ACTAAAATATTCGAGTTGTGCCAAATA 58.048 29.630 0.00 0.00 0.00 1.40
3587 4105 9.781834 CTAAAATATTCGAGTTGTGCCAAATAA 57.218 29.630 0.00 0.00 0.00 1.40
3589 4107 8.633075 AAATATTCGAGTTGTGCCAAATAATG 57.367 30.769 0.00 0.00 0.00 1.90
3590 4108 3.485947 TCGAGTTGTGCCAAATAATGC 57.514 42.857 0.00 0.00 0.00 3.56
3591 4109 2.816672 TCGAGTTGTGCCAAATAATGCA 59.183 40.909 0.00 0.00 34.54 3.96
3592 4110 3.254411 TCGAGTTGTGCCAAATAATGCAA 59.746 39.130 0.00 0.00 39.57 4.08
3593 4111 3.986572 CGAGTTGTGCCAAATAATGCAAA 59.013 39.130 0.00 0.00 39.57 3.68
3594 4112 4.090354 CGAGTTGTGCCAAATAATGCAAAG 59.910 41.667 0.00 0.00 39.57 2.77
3595 4113 4.959723 AGTTGTGCCAAATAATGCAAAGT 58.040 34.783 0.00 0.00 39.57 2.66
3596 4114 5.367302 AGTTGTGCCAAATAATGCAAAGTT 58.633 33.333 0.00 0.00 39.57 2.66
3597 4115 6.520272 AGTTGTGCCAAATAATGCAAAGTTA 58.480 32.000 0.00 0.00 39.57 2.24
3598 4116 6.989169 AGTTGTGCCAAATAATGCAAAGTTAA 59.011 30.769 0.00 0.00 39.57 2.01
3599 4117 7.661027 AGTTGTGCCAAATAATGCAAAGTTAAT 59.339 29.630 0.00 0.00 39.57 1.40
3600 4118 7.976135 TGTGCCAAATAATGCAAAGTTAATT 57.024 28.000 0.00 0.00 39.57 1.40
3601 4119 7.804712 TGTGCCAAATAATGCAAAGTTAATTG 58.195 30.769 0.00 0.00 39.57 2.32
3602 4120 7.443575 TGTGCCAAATAATGCAAAGTTAATTGT 59.556 29.630 0.00 0.00 39.57 2.71
3603 4121 7.745594 GTGCCAAATAATGCAAAGTTAATTGTG 59.254 33.333 0.00 0.00 39.57 3.33
3604 4122 7.094890 TGCCAAATAATGCAAAGTTAATTGTGG 60.095 33.333 0.00 0.00 33.87 4.17
3605 4123 7.094848 GCCAAATAATGCAAAGTTAATTGTGGT 60.095 33.333 0.00 0.00 32.80 4.16
3606 4124 8.229137 CCAAATAATGCAAAGTTAATTGTGGTG 58.771 33.333 0.00 0.00 32.80 4.17
3607 4125 8.986847 CAAATAATGCAAAGTTAATTGTGGTGA 58.013 29.630 0.00 0.00 32.80 4.02
3608 4126 9.553064 AAATAATGCAAAGTTAATTGTGGTGAA 57.447 25.926 0.00 0.00 32.80 3.18
3609 4127 8.761575 ATAATGCAAAGTTAATTGTGGTGAAG 57.238 30.769 0.00 0.00 32.80 3.02
3610 4128 5.843673 TGCAAAGTTAATTGTGGTGAAGA 57.156 34.783 0.00 0.00 32.80 2.87
3611 4129 6.214191 TGCAAAGTTAATTGTGGTGAAGAA 57.786 33.333 0.00 0.00 32.80 2.52
3612 4130 6.634805 TGCAAAGTTAATTGTGGTGAAGAAA 58.365 32.000 0.00 0.00 32.80 2.52
3613 4131 6.533367 TGCAAAGTTAATTGTGGTGAAGAAAC 59.467 34.615 0.00 0.00 32.80 2.78
3614 4132 6.019075 GCAAAGTTAATTGTGGTGAAGAAACC 60.019 38.462 0.00 0.00 40.94 3.27
3615 4133 5.784578 AGTTAATTGTGGTGAAGAAACCC 57.215 39.130 0.00 0.00 39.70 4.11
3616 4134 4.587262 AGTTAATTGTGGTGAAGAAACCCC 59.413 41.667 0.00 0.00 39.70 4.95
3617 4135 2.765689 ATTGTGGTGAAGAAACCCCA 57.234 45.000 0.00 0.00 39.70 4.96
3618 4136 1.770294 TTGTGGTGAAGAAACCCCAC 58.230 50.000 0.00 0.00 46.04 4.61
3619 4137 0.923358 TGTGGTGAAGAAACCCCACT 59.077 50.000 8.91 0.00 46.02 4.00
3620 4138 1.286553 TGTGGTGAAGAAACCCCACTT 59.713 47.619 8.91 0.00 46.02 3.16
3621 4139 2.291930 TGTGGTGAAGAAACCCCACTTT 60.292 45.455 8.91 0.00 46.02 2.66
3622 4140 2.764010 GTGGTGAAGAAACCCCACTTTT 59.236 45.455 0.00 0.00 43.21 2.27
3623 4141 3.955551 GTGGTGAAGAAACCCCACTTTTA 59.044 43.478 0.00 0.00 43.21 1.52
3624 4142 4.587262 GTGGTGAAGAAACCCCACTTTTAT 59.413 41.667 0.00 0.00 43.21 1.40
3625 4143 5.771165 GTGGTGAAGAAACCCCACTTTTATA 59.229 40.000 0.00 0.00 43.21 0.98
3626 4144 6.265876 GTGGTGAAGAAACCCCACTTTTATAA 59.734 38.462 0.00 0.00 43.21 0.98
3627 4145 6.839657 TGGTGAAGAAACCCCACTTTTATAAA 59.160 34.615 0.00 0.00 39.70 1.40
3628 4146 7.344871 TGGTGAAGAAACCCCACTTTTATAAAA 59.655 33.333 10.16 10.16 39.70 1.52
3629 4147 8.372459 GGTGAAGAAACCCCACTTTTATAAAAT 58.628 33.333 10.97 0.04 33.79 1.82
3630 4148 9.203421 GTGAAGAAACCCCACTTTTATAAAATG 57.797 33.333 10.97 10.86 0.00 2.32
3631 4149 8.929487 TGAAGAAACCCCACTTTTATAAAATGT 58.071 29.630 10.97 8.66 0.00 2.71
3632 4150 9.772973 GAAGAAACCCCACTTTTATAAAATGTT 57.227 29.630 10.97 7.36 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.168604 CGCGCCGCAGATCGATAG 61.169 66.667 10.75 0.00 41.67 2.08
21 22 0.175073 AGAAAGTATGTCCGGACCGC 59.825 55.000 31.19 20.01 0.00 5.68
45 46 1.231958 CCACGTTTGCCTCCGCTTTA 61.232 55.000 0.00 0.00 35.36 1.85
55 56 1.228154 AGAACTCCCCCACGTTTGC 60.228 57.895 0.00 0.00 0.00 3.68
60 61 4.760047 CCGCAGAACTCCCCCACG 62.760 72.222 0.00 0.00 0.00 4.94
61 62 2.406002 TTTCCGCAGAACTCCCCCAC 62.406 60.000 0.00 0.00 0.00 4.61
79 80 0.179000 GTCATGAGGCTGTCCGGATT 59.821 55.000 7.81 0.00 37.47 3.01
80 81 0.977627 TGTCATGAGGCTGTCCGGAT 60.978 55.000 7.81 0.00 37.47 4.18
81 82 1.191489 TTGTCATGAGGCTGTCCGGA 61.191 55.000 0.00 0.00 37.47 5.14
82 83 0.321564 TTTGTCATGAGGCTGTCCGG 60.322 55.000 0.00 0.00 37.47 5.14
89 90 3.642705 GACTTTTGGTTTGTCATGAGGC 58.357 45.455 0.00 0.00 0.00 4.70
121 122 1.546476 GACATCTGGACGAAGAGGTGT 59.454 52.381 8.95 4.24 41.04 4.16
133 134 0.249657 GCTAGCCTTCCGACATCTGG 60.250 60.000 2.29 0.00 0.00 3.86
135 136 1.069823 CATGCTAGCCTTCCGACATCT 59.930 52.381 13.29 0.00 0.00 2.90
140 141 2.384828 TCTAACATGCTAGCCTTCCGA 58.615 47.619 13.29 0.00 0.00 4.55
160 162 7.838079 TGCCAAATGCCTAAATACTAATCAT 57.162 32.000 0.00 0.00 40.16 2.45
173 175 2.358582 GCAAAGTTTTTGCCAAATGCCT 59.641 40.909 13.97 0.00 39.38 4.75
184 186 6.995091 TGCCCAACTATATTTGCAAAGTTTTT 59.005 30.769 18.19 2.63 29.93 1.94
185 187 6.529220 TGCCCAACTATATTTGCAAAGTTTT 58.471 32.000 18.19 3.03 29.93 2.43
188 190 5.937975 ATGCCCAACTATATTTGCAAAGT 57.062 34.783 18.19 11.12 31.81 2.66
200 202 0.679640 CTTCCGCCAATGCCCAACTA 60.680 55.000 0.00 0.00 0.00 2.24
206 208 0.679960 AGTAACCTTCCGCCAATGCC 60.680 55.000 0.00 0.00 0.00 4.40
243 251 4.769488 TGCCCAAATACTAATCACTTTGCA 59.231 37.500 0.00 0.00 0.00 4.08
245 253 7.278424 CCAAATGCCCAAATACTAATCACTTTG 59.722 37.037 0.00 0.00 0.00 2.77
248 256 5.163416 GCCAAATGCCCAAATACTAATCACT 60.163 40.000 0.00 0.00 0.00 3.41
272 280 8.632679 TGCCCAAATATATTTAGAAAGCTTCTG 58.367 33.333 10.34 0.00 40.94 3.02
273 281 8.766994 TGCCCAAATATATTTAGAAAGCTTCT 57.233 30.769 10.34 1.33 43.72 2.85
282 290 7.881142 TCCGTCAAATGCCCAAATATATTTAG 58.119 34.615 10.34 3.63 0.00 1.85
283 291 7.825331 TCCGTCAAATGCCCAAATATATTTA 57.175 32.000 10.34 0.00 0.00 1.40
303 311 2.657143 TGGCAAAAGGTAAACTTCCGT 58.343 42.857 0.00 0.00 38.85 4.69
305 313 6.524101 TCATATGGCAAAAGGTAAACTTCC 57.476 37.500 2.13 0.00 38.85 3.46
310 318 7.652524 TGCTAATCATATGGCAAAAGGTAAA 57.347 32.000 2.13 0.00 0.00 2.01
314 322 7.170320 GTCAAATGCTAATCATATGGCAAAAGG 59.830 37.037 8.20 1.01 38.21 3.11
315 323 7.707464 TGTCAAATGCTAATCATATGGCAAAAG 59.293 33.333 8.20 2.71 38.21 2.27
317 325 7.110043 TGTCAAATGCTAATCATATGGCAAA 57.890 32.000 8.20 0.00 38.21 3.68
376 384 6.429692 AGTTTCCGTCATTTCATCAATGTGTA 59.570 34.615 0.00 0.00 42.79 2.90
381 389 7.630242 ACATAGTTTCCGTCATTTCATCAAT 57.370 32.000 0.00 0.00 0.00 2.57
386 394 9.878667 TCTATTTACATAGTTTCCGTCATTTCA 57.121 29.630 0.00 0.00 34.85 2.69
393 401 7.012989 GGCCAAATCTATTTACATAGTTTCCGT 59.987 37.037 0.00 0.00 34.85 4.69
394 402 7.228706 AGGCCAAATCTATTTACATAGTTTCCG 59.771 37.037 5.01 0.00 34.85 4.30
399 407 8.695456 CCAAAAGGCCAAATCTATTTACATAGT 58.305 33.333 5.01 0.00 34.85 2.12
402 410 6.348498 GCCAAAAGGCCAAATCTATTTACAT 58.652 36.000 5.01 0.00 0.00 2.29
448 456 1.202302 GCTTCTTTCCGCTAAATGGGC 60.202 52.381 0.00 0.00 0.00 5.36
456 464 4.246458 CACTAAACTAGCTTCTTTCCGCT 58.754 43.478 0.00 0.00 40.15 5.52
463 471 2.176889 TCCGCCACTAAACTAGCTTCT 58.823 47.619 0.00 0.00 0.00 2.85
474 482 0.389391 GATAGCTGCTTCCGCCACTA 59.611 55.000 7.79 0.00 34.43 2.74
492 500 2.817258 CCAATGTAGTTTCCGCCAAAGA 59.183 45.455 0.00 0.00 0.00 2.52
510 518 4.249638 AGGCTATTAATCCTTGTGCCAA 57.750 40.909 0.00 0.00 41.12 4.52
513 521 3.251004 CGGAAGGCTATTAATCCTTGTGC 59.749 47.826 12.05 0.54 42.37 4.57
533 541 0.099791 AGTCGTTGTTTGTTTGGCGG 59.900 50.000 0.00 0.00 0.00 6.13
534 542 2.741122 TAGTCGTTGTTTGTTTGGCG 57.259 45.000 0.00 0.00 0.00 5.69
545 553 9.807386 CTTTTAGAAAACTATGGTTAGTCGTTG 57.193 33.333 0.00 0.00 37.70 4.10
547 555 8.370182 TCCTTTTAGAAAACTATGGTTAGTCGT 58.630 33.333 0.00 0.00 37.70 4.34
565 573 8.398665 GCCAACTAACTACATGATTCCTTTTAG 58.601 37.037 0.00 0.00 0.00 1.85
566 574 7.065324 CGCCAACTAACTACATGATTCCTTTTA 59.935 37.037 0.00 0.00 0.00 1.52
570 578 4.081087 ACGCCAACTAACTACATGATTCCT 60.081 41.667 0.00 0.00 0.00 3.36
576 584 8.736751 AATTTTAAACGCCAACTAACTACATG 57.263 30.769 0.00 0.00 0.00 3.21
581 589 9.240159 CTGTTAAATTTTAAACGCCAACTAACT 57.760 29.630 3.23 0.00 0.00 2.24
586 594 7.356962 CGTCTCTGTTAAATTTTAAACGCCAAC 60.357 37.037 3.23 0.00 0.00 3.77
607 615 4.726416 TCGTAACTGTAAATGACCGTCTC 58.274 43.478 0.00 0.00 0.00 3.36
614 622 6.254804 CGTCATCCAATCGTAACTGTAAATGA 59.745 38.462 0.00 0.00 0.00 2.57
624 636 2.756207 TGAGACCGTCATCCAATCGTAA 59.244 45.455 0.40 0.00 0.00 3.18
627 639 2.130395 CATGAGACCGTCATCCAATCG 58.870 52.381 0.40 0.00 44.73 3.34
629 641 1.210234 TGCATGAGACCGTCATCCAAT 59.790 47.619 0.00 0.00 44.73 3.16
662 674 1.609841 CCACGGTAAAAGGGACCAGTC 60.610 57.143 0.00 0.00 36.72 3.51
666 678 3.238232 GTCCACGGTAAAAGGGACC 57.762 57.895 3.80 0.00 43.14 4.46
672 684 3.191669 CGCATATCTGTCCACGGTAAAA 58.808 45.455 0.00 0.00 0.00 1.52
674 686 1.067974 CCGCATATCTGTCCACGGTAA 59.932 52.381 0.00 0.00 35.99 2.85
676 688 1.441729 CCGCATATCTGTCCACGGT 59.558 57.895 0.00 0.00 35.99 4.83
689 701 1.144057 CGCTAGTTTCCTCCCGCAT 59.856 57.895 0.00 0.00 0.00 4.73
690 702 2.577059 CGCTAGTTTCCTCCCGCA 59.423 61.111 0.00 0.00 0.00 5.69
692 704 1.896122 AACCCGCTAGTTTCCTCCCG 61.896 60.000 0.00 0.00 0.00 5.14
693 705 0.392595 CAACCCGCTAGTTTCCTCCC 60.393 60.000 0.00 0.00 0.00 4.30
694 706 1.025113 GCAACCCGCTAGTTTCCTCC 61.025 60.000 0.00 0.00 37.77 4.30
696 708 0.328258 ATGCAACCCGCTAGTTTCCT 59.672 50.000 0.00 0.00 43.06 3.36
697 709 0.451783 CATGCAACCCGCTAGTTTCC 59.548 55.000 0.00 0.00 43.06 3.13
698 710 1.135689 CACATGCAACCCGCTAGTTTC 60.136 52.381 0.00 0.00 43.06 2.78
700 712 0.036164 TCACATGCAACCCGCTAGTT 59.964 50.000 0.00 0.00 43.06 2.24
701 713 0.036164 TTCACATGCAACCCGCTAGT 59.964 50.000 0.00 0.00 43.06 2.57
702 714 0.729116 CTTCACATGCAACCCGCTAG 59.271 55.000 0.00 0.00 43.06 3.42
703 715 0.323302 TCTTCACATGCAACCCGCTA 59.677 50.000 0.00 0.00 43.06 4.26
704 716 0.322816 ATCTTCACATGCAACCCGCT 60.323 50.000 0.00 0.00 43.06 5.52
705 717 0.179156 CATCTTCACATGCAACCCGC 60.179 55.000 0.00 0.00 42.89 6.13
713 725 4.521146 ACTCCTTTAGGCATCTTCACATG 58.479 43.478 0.00 0.00 34.44 3.21
714 726 4.851639 ACTCCTTTAGGCATCTTCACAT 57.148 40.909 0.00 0.00 34.44 3.21
715 727 5.755409 TTACTCCTTTAGGCATCTTCACA 57.245 39.130 0.00 0.00 34.44 3.58
716 728 8.778358 CATTATTACTCCTTTAGGCATCTTCAC 58.222 37.037 0.00 0.00 34.44 3.18
717 729 7.445402 GCATTATTACTCCTTTAGGCATCTTCA 59.555 37.037 0.00 0.00 34.44 3.02
718 730 7.663493 AGCATTATTACTCCTTTAGGCATCTTC 59.337 37.037 0.00 0.00 34.44 2.87
719 731 7.446625 CAGCATTATTACTCCTTTAGGCATCTT 59.553 37.037 0.00 0.00 34.44 2.40
720 732 6.939163 CAGCATTATTACTCCTTTAGGCATCT 59.061 38.462 0.00 0.00 34.44 2.90
721 733 6.348868 GCAGCATTATTACTCCTTTAGGCATC 60.349 42.308 0.00 0.00 34.44 3.91
722 734 5.474876 GCAGCATTATTACTCCTTTAGGCAT 59.525 40.000 0.00 0.00 34.44 4.40
723 735 4.821805 GCAGCATTATTACTCCTTTAGGCA 59.178 41.667 0.00 0.00 34.44 4.75
724 736 5.049129 CAGCAGCATTATTACTCCTTTAGGC 60.049 44.000 0.00 0.00 34.44 3.93
725 737 6.058183 ACAGCAGCATTATTACTCCTTTAGG 58.942 40.000 0.00 0.00 0.00 2.69
726 738 8.662781 TTACAGCAGCATTATTACTCCTTTAG 57.337 34.615 0.00 0.00 0.00 1.85
728 740 9.799106 ATATTACAGCAGCATTATTACTCCTTT 57.201 29.630 0.00 0.00 0.00 3.11
731 743 9.319143 CCTATATTACAGCAGCATTATTACTCC 57.681 37.037 0.00 0.00 0.00 3.85
732 744 8.821894 GCCTATATTACAGCAGCATTATTACTC 58.178 37.037 0.00 0.00 0.00 2.59
733 745 8.321353 TGCCTATATTACAGCAGCATTATTACT 58.679 33.333 0.00 0.00 0.00 2.24
734 746 8.492673 TGCCTATATTACAGCAGCATTATTAC 57.507 34.615 0.00 0.00 0.00 1.89
735 747 9.330063 GATGCCTATATTACAGCAGCATTATTA 57.670 33.333 0.00 0.00 41.14 0.98
736 748 7.284034 GGATGCCTATATTACAGCAGCATTATT 59.716 37.037 0.00 0.00 43.17 1.40
737 749 6.769822 GGATGCCTATATTACAGCAGCATTAT 59.230 38.462 0.00 0.00 43.17 1.28
738 750 6.115446 GGATGCCTATATTACAGCAGCATTA 58.885 40.000 0.00 0.00 43.17 1.90
739 751 4.946157 GGATGCCTATATTACAGCAGCATT 59.054 41.667 0.00 0.00 43.17 3.56
740 752 4.019051 TGGATGCCTATATTACAGCAGCAT 60.019 41.667 0.00 0.00 43.17 3.79
741 753 3.327464 TGGATGCCTATATTACAGCAGCA 59.673 43.478 0.00 0.00 43.17 4.41
742 754 3.942829 TGGATGCCTATATTACAGCAGC 58.057 45.455 0.00 0.00 40.77 5.25
743 755 6.488006 AGTTTTGGATGCCTATATTACAGCAG 59.512 38.462 0.00 0.00 38.89 4.24
744 756 6.364701 AGTTTTGGATGCCTATATTACAGCA 58.635 36.000 0.00 0.00 40.00 4.41
745 757 6.884280 AGTTTTGGATGCCTATATTACAGC 57.116 37.500 0.00 0.00 0.00 4.40
762 774 6.315144 CCCTTGTTTTCTAACCCAAAGTTTTG 59.685 38.462 0.00 0.00 40.05 2.44
763 775 6.411376 CCCTTGTTTTCTAACCCAAAGTTTT 58.589 36.000 0.00 0.00 40.05 2.43
764 776 5.628200 GCCCTTGTTTTCTAACCCAAAGTTT 60.628 40.000 0.00 0.00 40.05 2.66
765 777 4.141801 GCCCTTGTTTTCTAACCCAAAGTT 60.142 41.667 0.00 0.00 42.83 2.66
766 778 3.386726 GCCCTTGTTTTCTAACCCAAAGT 59.613 43.478 0.00 0.00 33.15 2.66
767 779 3.386402 TGCCCTTGTTTTCTAACCCAAAG 59.614 43.478 0.00 0.00 33.15 2.77
768 780 3.375699 TGCCCTTGTTTTCTAACCCAAA 58.624 40.909 0.00 0.00 33.15 3.28
769 781 3.033659 TGCCCTTGTTTTCTAACCCAA 57.966 42.857 0.00 0.00 33.15 4.12
770 782 2.757894 TGCCCTTGTTTTCTAACCCA 57.242 45.000 0.00 0.00 33.15 4.51
771 783 3.227614 TCTTGCCCTTGTTTTCTAACCC 58.772 45.455 0.00 0.00 33.15 4.11
772 784 3.305403 GCTCTTGCCCTTGTTTTCTAACC 60.305 47.826 0.00 0.00 33.15 2.85
773 785 3.570125 AGCTCTTGCCCTTGTTTTCTAAC 59.430 43.478 0.00 0.00 40.80 2.34
774 786 3.832527 AGCTCTTGCCCTTGTTTTCTAA 58.167 40.909 0.00 0.00 40.80 2.10
775 787 3.508845 AGCTCTTGCCCTTGTTTTCTA 57.491 42.857 0.00 0.00 40.80 2.10
801 814 3.361158 CGCGTTGACCCAATGGCA 61.361 61.111 0.00 0.00 31.70 4.92
920 940 7.817962 GGAAATGTCCAAGTACATATATAGCGT 59.182 37.037 0.00 0.00 44.26 5.07
972 992 0.809636 CGCAGTGTGTCAACTGGTCA 60.810 55.000 13.53 0.00 46.34 4.02
981 1001 0.941542 TAGTTTTGGCGCAGTGTGTC 59.058 50.000 10.83 0.07 0.00 3.67
1007 1030 3.011085 CACTTTGAGGCTGAGTGCA 57.989 52.632 0.00 0.00 45.15 4.57
1050 1076 0.806102 CGTAATGCACGCTGGCTAGT 60.806 55.000 0.00 0.00 45.03 2.57
1077 1103 4.083862 GAGGGACGACCAGGGTGC 62.084 72.222 6.20 0.00 43.89 5.01
1172 1198 1.686052 GGTTGTTGAAAGGCATGACCA 59.314 47.619 0.00 0.00 43.14 4.02
1179 1205 0.178961 AGGGGAGGTTGTTGAAAGGC 60.179 55.000 0.00 0.00 0.00 4.35
1291 1332 6.530120 TCTGTAACATAAACTGAAAGCTGGA 58.470 36.000 0.00 0.00 37.60 3.86
1293 1334 7.658179 TCTCTGTAACATAAACTGAAAGCTG 57.342 36.000 0.00 0.00 37.60 4.24
1306 1353 8.147058 CACCTTCTATAGCATTCTCTGTAACAT 58.853 37.037 0.00 0.00 0.00 2.71
1333 1384 0.691078 AGTCCCGGCATGGTAGACAT 60.691 55.000 0.00 0.00 41.57 3.06
1358 1425 5.278169 GCTGCCAAGTTGATTCATCGAATAT 60.278 40.000 3.87 0.00 31.89 1.28
1360 1427 3.181493 GCTGCCAAGTTGATTCATCGAAT 60.181 43.478 3.87 0.00 34.71 3.34
1361 1428 2.162208 GCTGCCAAGTTGATTCATCGAA 59.838 45.455 3.87 0.00 0.00 3.71
1362 1429 1.739466 GCTGCCAAGTTGATTCATCGA 59.261 47.619 3.87 0.00 0.00 3.59
1363 1430 1.202222 GGCTGCCAAGTTGATTCATCG 60.202 52.381 15.17 0.00 0.00 3.84
1443 1511 3.011760 GACGGCGAAGTTTGCTCCG 62.012 63.158 16.62 12.67 45.04 4.63
1608 1676 1.331241 CATCGATCATGGCTACGTCG 58.669 55.000 0.00 0.00 0.00 5.12
1609 1677 1.063806 GCATCGATCATGGCTACGTC 58.936 55.000 0.00 0.00 32.37 4.34
1610 1678 0.389025 TGCATCGATCATGGCTACGT 59.611 50.000 0.00 0.00 32.37 3.57
1612 1680 1.129998 GCATGCATCGATCATGGCTAC 59.870 52.381 25.58 13.73 41.08 3.58
1614 1682 0.536460 TGCATGCATCGATCATGGCT 60.536 50.000 25.58 6.04 41.08 4.75
1628 1735 0.873312 CACTCGATCGGGACTGCATG 60.873 60.000 24.50 4.03 0.00 4.06
1630 1737 1.037579 ATCACTCGATCGGGACTGCA 61.038 55.000 24.50 0.00 0.00 4.41
1631 1738 0.318275 GATCACTCGATCGGGACTGC 60.318 60.000 24.50 4.42 38.84 4.40
1641 1748 1.256812 TTGTCAGCCAGATCACTCGA 58.743 50.000 0.00 0.00 0.00 4.04
1642 1749 2.084610 TTTGTCAGCCAGATCACTCG 57.915 50.000 0.00 0.00 0.00 4.18
1643 1750 3.755378 ACAATTTGTCAGCCAGATCACTC 59.245 43.478 0.00 0.00 0.00 3.51
1645 1752 3.366679 CCACAATTTGTCAGCCAGATCAC 60.367 47.826 0.00 0.00 0.00 3.06
1650 1757 3.457610 AAACCACAATTTGTCAGCCAG 57.542 42.857 0.00 0.00 0.00 4.85
1666 1773 3.686016 TCTGCACCCTGAAGATAAAACC 58.314 45.455 0.00 0.00 0.00 3.27
1681 1792 4.775058 TCTCTTGAAGTAGTCTCTGCAC 57.225 45.455 0.00 0.00 0.00 4.57
1819 1930 0.686441 AGTACCATACCTCAGCGCCA 60.686 55.000 2.29 0.00 0.00 5.69
1837 1948 0.108662 TGTCATGTGCTGCTACGGAG 60.109 55.000 0.00 0.00 0.00 4.63
1838 1949 0.320050 TTGTCATGTGCTGCTACGGA 59.680 50.000 0.00 0.00 0.00 4.69
1877 2072 4.901324 GAACGATCAAGCTGCAGCGTTC 62.901 54.545 31.78 29.19 46.61 3.95
2124 2509 1.657794 GTAGACGATCTTCGCCGCC 60.658 63.158 0.00 0.00 45.12 6.13
2208 2593 0.460635 GTACATTCTAACCGCGGGCA 60.461 55.000 31.76 15.76 0.00 5.36
2213 2598 4.043037 ACAGCTAGTACATTCTAACCGC 57.957 45.455 0.00 0.00 0.00 5.68
2225 2610 5.575606 GCGTTTACTTTCATGACAGCTAGTA 59.424 40.000 8.81 3.40 0.00 1.82
2227 2612 4.201724 GGCGTTTACTTTCATGACAGCTAG 60.202 45.833 8.81 0.00 0.00 3.42
2429 2931 1.080298 GCACTGAACCCTGCAATGC 60.080 57.895 0.00 0.00 33.31 3.56
2431 2933 1.251251 GAAGCACTGAACCCTGCAAT 58.749 50.000 0.00 0.00 35.73 3.56
2671 3173 0.326927 CGCTGAGGGGGTCCTTTTTA 59.673 55.000 0.00 0.00 45.05 1.52
2982 3485 0.590195 GCGCCAGGAATAATCTGCAG 59.410 55.000 7.63 7.63 0.00 4.41
3060 3577 1.551883 GGAATCAGCCCAGTTTGCAAT 59.448 47.619 0.00 0.00 0.00 3.56
3206 3723 0.657312 CTCTGTGTTCTTGCACGCAA 59.343 50.000 4.12 4.12 41.94 4.85
3221 3738 6.728200 TGTGTAATGAGTTTTGCTTTCTCTG 58.272 36.000 0.00 0.00 0.00 3.35
3314 3832 9.793252 CAACAAAAATGGATAGATCTTACCTTG 57.207 33.333 0.00 8.00 0.00 3.61
3412 3930 1.135527 CTTAAGTATCCGGGCGTCACA 59.864 52.381 0.00 0.00 0.00 3.58
3413 3931 1.849097 CTTAAGTATCCGGGCGTCAC 58.151 55.000 0.00 0.00 0.00 3.67
3414 3932 0.103572 GCTTAAGTATCCGGGCGTCA 59.896 55.000 0.00 0.00 0.00 4.35
3415 3933 0.388294 AGCTTAAGTATCCGGGCGTC 59.612 55.000 0.00 0.00 0.00 5.19
3416 3934 1.339291 GTAGCTTAAGTATCCGGGCGT 59.661 52.381 0.00 0.00 0.00 5.68
3417 3935 1.338973 TGTAGCTTAAGTATCCGGGCG 59.661 52.381 0.00 0.00 0.00 6.13
3418 3936 2.364647 ACTGTAGCTTAAGTATCCGGGC 59.635 50.000 0.00 0.00 0.00 6.13
3419 3937 5.779529 TTACTGTAGCTTAAGTATCCGGG 57.220 43.478 0.00 0.00 0.00 5.73
3420 3938 5.981915 GGTTTACTGTAGCTTAAGTATCCGG 59.018 44.000 4.02 0.00 0.00 5.14
3421 3939 6.474751 GTGGTTTACTGTAGCTTAAGTATCCG 59.525 42.308 4.02 0.00 31.54 4.18
3422 3940 7.554211 AGTGGTTTACTGTAGCTTAAGTATCC 58.446 38.462 4.02 12.69 38.49 2.59
3437 3955 5.183140 GTGGCATCATTAACAGTGGTTTACT 59.817 40.000 0.00 0.00 41.36 2.24
3438 3956 5.399013 GTGGCATCATTAACAGTGGTTTAC 58.601 41.667 0.00 0.00 38.45 2.01
3439 3957 4.155099 CGTGGCATCATTAACAGTGGTTTA 59.845 41.667 0.00 0.00 38.45 2.01
3440 3958 3.057596 CGTGGCATCATTAACAGTGGTTT 60.058 43.478 0.00 0.00 38.45 3.27
3441 3959 2.487762 CGTGGCATCATTAACAGTGGTT 59.512 45.455 0.00 0.00 41.06 3.67
3442 3960 2.083774 CGTGGCATCATTAACAGTGGT 58.916 47.619 0.00 0.00 0.00 4.16
3443 3961 2.083774 ACGTGGCATCATTAACAGTGG 58.916 47.619 0.00 0.00 0.00 4.00
3444 3962 2.741517 TGACGTGGCATCATTAACAGTG 59.258 45.455 0.00 0.00 0.00 3.66
3445 3963 3.002791 CTGACGTGGCATCATTAACAGT 58.997 45.455 0.00 0.00 0.00 3.55
3446 3964 2.223112 GCTGACGTGGCATCATTAACAG 60.223 50.000 0.00 0.00 0.00 3.16
3447 3965 1.737236 GCTGACGTGGCATCATTAACA 59.263 47.619 0.00 0.00 0.00 2.41
3448 3966 1.737236 TGCTGACGTGGCATCATTAAC 59.263 47.619 8.47 0.00 34.56 2.01
3449 3967 1.737236 GTGCTGACGTGGCATCATTAA 59.263 47.619 14.47 0.00 41.86 1.40
3450 3968 1.338579 TGTGCTGACGTGGCATCATTA 60.339 47.619 14.47 0.11 41.86 1.90
3451 3969 0.606130 TGTGCTGACGTGGCATCATT 60.606 50.000 14.47 0.00 41.86 2.57
3452 3970 0.606130 TTGTGCTGACGTGGCATCAT 60.606 50.000 14.47 0.00 41.86 2.45
3453 3971 0.606130 ATTGTGCTGACGTGGCATCA 60.606 50.000 14.47 11.60 41.86 3.07
3454 3972 0.523072 AATTGTGCTGACGTGGCATC 59.477 50.000 14.47 9.67 41.86 3.91
3455 3973 1.468520 GTAATTGTGCTGACGTGGCAT 59.531 47.619 14.47 3.39 41.86 4.40
3456 3974 0.871722 GTAATTGTGCTGACGTGGCA 59.128 50.000 8.47 8.47 37.36 4.92
3457 3975 1.135972 CAGTAATTGTGCTGACGTGGC 60.136 52.381 0.00 0.00 39.68 5.01
3458 3976 2.143122 ACAGTAATTGTGCTGACGTGG 58.857 47.619 0.00 0.00 39.68 4.94
3459 3977 3.544651 CAACAGTAATTGTGCTGACGTG 58.455 45.455 0.00 0.00 39.68 4.49
3460 3978 2.032030 GCAACAGTAATTGTGCTGACGT 60.032 45.455 11.66 0.00 39.68 4.34
3461 3979 2.224079 AGCAACAGTAATTGTGCTGACG 59.776 45.455 11.66 0.00 39.68 4.35
3462 3980 3.904136 AGCAACAGTAATTGTGCTGAC 57.096 42.857 11.66 3.66 39.68 3.51
3463 3981 5.939883 AGATTAGCAACAGTAATTGTGCTGA 59.060 36.000 6.90 0.00 41.24 4.26
3464 3982 6.187125 AGATTAGCAACAGTAATTGTGCTG 57.813 37.500 6.90 8.17 41.24 4.41
3465 3983 5.063944 CGAGATTAGCAACAGTAATTGTGCT 59.936 40.000 2.32 2.32 42.62 4.40
3466 3984 5.258622 CGAGATTAGCAACAGTAATTGTGC 58.741 41.667 0.00 0.00 40.74 4.57
3467 3985 5.258622 GCGAGATTAGCAACAGTAATTGTG 58.741 41.667 0.00 0.00 40.74 3.33
3468 3986 4.032900 CGCGAGATTAGCAACAGTAATTGT 59.967 41.667 0.00 0.00 43.45 2.71
3469 3987 4.032900 ACGCGAGATTAGCAACAGTAATTG 59.967 41.667 15.93 0.00 34.19 2.32
3470 3988 4.181578 ACGCGAGATTAGCAACAGTAATT 58.818 39.130 15.93 0.00 34.19 1.40
3471 3989 3.782046 ACGCGAGATTAGCAACAGTAAT 58.218 40.909 15.93 0.00 34.19 1.89
3472 3990 3.226346 ACGCGAGATTAGCAACAGTAA 57.774 42.857 15.93 0.00 34.19 2.24
3473 3991 2.933495 ACGCGAGATTAGCAACAGTA 57.067 45.000 15.93 0.00 34.19 2.74
3474 3992 2.080286 AACGCGAGATTAGCAACAGT 57.920 45.000 15.93 0.00 34.19 3.55
3475 3993 3.179830 ACTAACGCGAGATTAGCAACAG 58.820 45.455 15.93 0.00 33.66 3.16
3476 3994 3.226346 ACTAACGCGAGATTAGCAACA 57.774 42.857 15.93 0.00 33.66 3.33
3477 3995 3.301007 CGAACTAACGCGAGATTAGCAAC 60.301 47.826 15.93 5.07 33.66 4.17
3478 3996 2.850060 CGAACTAACGCGAGATTAGCAA 59.150 45.455 15.93 0.00 33.66 3.91
3479 3997 2.096335 TCGAACTAACGCGAGATTAGCA 59.904 45.455 15.93 0.00 33.66 3.49
3480 3998 2.713011 TCGAACTAACGCGAGATTAGC 58.287 47.619 15.93 0.00 33.66 3.09
3481 3999 4.792189 AGTTTCGAACTAACGCGAGATTAG 59.208 41.667 15.93 13.42 40.69 1.73
3482 4000 4.556135 CAGTTTCGAACTAACGCGAGATTA 59.444 41.667 15.93 0.00 40.46 1.75
3483 4001 3.364023 CAGTTTCGAACTAACGCGAGATT 59.636 43.478 15.93 0.00 40.46 2.40
3484 4002 2.915463 CAGTTTCGAACTAACGCGAGAT 59.085 45.455 15.93 0.13 40.46 2.75
3485 4003 2.031769 TCAGTTTCGAACTAACGCGAGA 60.032 45.455 15.93 0.00 40.46 4.04
3486 4004 2.313234 TCAGTTTCGAACTAACGCGAG 58.687 47.619 15.93 2.26 40.46 5.03
3487 4005 2.404265 TCAGTTTCGAACTAACGCGA 57.596 45.000 15.93 0.00 40.46 5.87
3488 4006 3.120616 TGAATCAGTTTCGAACTAACGCG 59.879 43.478 3.53 3.53 40.46 6.01
3489 4007 4.640805 TGAATCAGTTTCGAACTAACGC 57.359 40.909 0.00 0.00 40.46 4.84
3490 4008 7.796660 TGAATTTGAATCAGTTTCGAACTAACG 59.203 33.333 0.00 0.00 39.90 3.18
3491 4009 9.445786 TTGAATTTGAATCAGTTTCGAACTAAC 57.554 29.630 0.00 0.00 39.90 2.34
3494 4012 9.533253 AATTTGAATTTGAATCAGTTTCGAACT 57.467 25.926 0.00 0.00 39.90 3.01
3495 4013 9.783425 GAATTTGAATTTGAATCAGTTTCGAAC 57.217 29.630 0.00 0.00 39.90 3.95
3496 4014 9.526713 TGAATTTGAATTTGAATCAGTTTCGAA 57.473 25.926 0.00 0.00 41.05 3.71
3497 4015 9.526713 TTGAATTTGAATTTGAATCAGTTTCGA 57.473 25.926 0.00 0.00 37.13 3.71
3512 4030 9.881529 CCGTTTGATTTGATTTTGAATTTGAAT 57.118 25.926 0.00 0.00 0.00 2.57
3513 4031 8.887717 ACCGTTTGATTTGATTTTGAATTTGAA 58.112 25.926 0.00 0.00 0.00 2.69
3514 4032 8.430801 ACCGTTTGATTTGATTTTGAATTTGA 57.569 26.923 0.00 0.00 0.00 2.69
3519 4037 9.372369 ACTTTTACCGTTTGATTTGATTTTGAA 57.628 25.926 0.00 0.00 0.00 2.69
3520 4038 8.934507 ACTTTTACCGTTTGATTTGATTTTGA 57.065 26.923 0.00 0.00 0.00 2.69
3521 4039 9.980780 AAACTTTTACCGTTTGATTTGATTTTG 57.019 25.926 0.00 0.00 33.64 2.44
3524 4042 9.372369 TGAAAACTTTTACCGTTTGATTTGATT 57.628 25.926 0.00 0.00 35.00 2.57
3525 4043 8.934507 TGAAAACTTTTACCGTTTGATTTGAT 57.065 26.923 0.00 0.00 35.00 2.57
3526 4044 8.758633 TTGAAAACTTTTACCGTTTGATTTGA 57.241 26.923 0.00 0.00 35.00 2.69
3527 4045 9.980780 ATTTGAAAACTTTTACCGTTTGATTTG 57.019 25.926 0.00 0.00 35.00 2.32
3555 4073 9.615295 GGCACAACTCGAATATTTTAGTTTTAA 57.385 29.630 11.60 0.00 29.93 1.52
3556 4074 8.784994 TGGCACAACTCGAATATTTTAGTTTTA 58.215 29.630 11.60 0.00 31.92 1.52
3557 4075 7.653647 TGGCACAACTCGAATATTTTAGTTTT 58.346 30.769 11.60 5.58 31.92 2.43
3558 4076 7.209471 TGGCACAACTCGAATATTTTAGTTT 57.791 32.000 11.60 4.41 31.92 2.66
3559 4077 6.811253 TGGCACAACTCGAATATTTTAGTT 57.189 33.333 9.43 9.43 31.92 2.24
3576 4094 7.443575 ACAATTAACTTTGCATTATTTGGCACA 59.556 29.630 13.57 0.00 40.23 4.57
3577 4095 7.745594 CACAATTAACTTTGCATTATTTGGCAC 59.254 33.333 13.57 0.00 40.23 5.01
3578 4096 7.094890 CCACAATTAACTTTGCATTATTTGGCA 60.095 33.333 13.57 0.00 38.46 4.92
3579 4097 7.094848 ACCACAATTAACTTTGCATTATTTGGC 60.095 33.333 13.57 0.00 31.63 4.52
3580 4098 8.229137 CACCACAATTAACTTTGCATTATTTGG 58.771 33.333 13.57 7.01 31.63 3.28
3581 4099 8.986847 TCACCACAATTAACTTTGCATTATTTG 58.013 29.630 9.83 9.83 32.76 2.32
3582 4100 9.553064 TTCACCACAATTAACTTTGCATTATTT 57.447 25.926 0.00 0.00 0.00 1.40
3583 4101 9.206870 CTTCACCACAATTAACTTTGCATTATT 57.793 29.630 0.00 0.00 0.00 1.40
3584 4102 8.584157 TCTTCACCACAATTAACTTTGCATTAT 58.416 29.630 0.00 0.00 0.00 1.28
3585 4103 7.946207 TCTTCACCACAATTAACTTTGCATTA 58.054 30.769 0.00 0.00 0.00 1.90
3586 4104 6.815089 TCTTCACCACAATTAACTTTGCATT 58.185 32.000 0.00 0.00 0.00 3.56
3587 4105 6.403866 TCTTCACCACAATTAACTTTGCAT 57.596 33.333 0.00 0.00 0.00 3.96
3588 4106 5.843673 TCTTCACCACAATTAACTTTGCA 57.156 34.783 0.00 0.00 0.00 4.08
3589 4107 6.019075 GGTTTCTTCACCACAATTAACTTTGC 60.019 38.462 0.00 0.00 36.73 3.68
3590 4108 6.478673 GGGTTTCTTCACCACAATTAACTTTG 59.521 38.462 0.00 0.00 38.79 2.77
3591 4109 6.407639 GGGGTTTCTTCACCACAATTAACTTT 60.408 38.462 0.00 0.00 40.42 2.66
3592 4110 5.069914 GGGGTTTCTTCACCACAATTAACTT 59.930 40.000 0.00 0.00 40.42 2.66
3593 4111 4.587262 GGGGTTTCTTCACCACAATTAACT 59.413 41.667 0.00 0.00 40.42 2.24
3594 4112 4.878439 GGGGTTTCTTCACCACAATTAAC 58.122 43.478 0.00 0.00 40.42 2.01
3602 4120 2.838637 AAAGTGGGGTTTCTTCACCA 57.161 45.000 0.00 0.00 38.79 4.17
3603 4121 6.904463 TTATAAAAGTGGGGTTTCTTCACC 57.096 37.500 0.00 0.00 35.88 4.02
3604 4122 9.203421 CATTTTATAAAAGTGGGGTTTCTTCAC 57.797 33.333 15.45 0.00 0.00 3.18
3605 4123 8.929487 ACATTTTATAAAAGTGGGGTTTCTTCA 58.071 29.630 15.45 0.00 0.00 3.02
3606 4124 9.772973 AACATTTTATAAAAGTGGGGTTTCTTC 57.227 29.630 15.45 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.