Multiple sequence alignment - TraesCS3B01G161800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G161800 chr3B 100.000 9528 0 0 1 9528 158695247 158704774 0.000000e+00 17595.0
1 TraesCS3B01G161800 chr3D 94.688 2579 92 25 613 3168 107659253 107661809 0.000000e+00 3962.0
2 TraesCS3B01G161800 chr3D 97.683 2287 33 6 3215 5494 107661819 107664092 0.000000e+00 3912.0
3 TraesCS3B01G161800 chr3D 93.146 1853 64 22 7715 9528 107665998 107667826 0.000000e+00 2660.0
4 TraesCS3B01G161800 chr3D 93.215 1017 42 6 5539 6529 107664092 107665107 0.000000e+00 1471.0
5 TraesCS3B01G161800 chr3D 97.669 472 10 1 6825 7296 107665105 107665575 0.000000e+00 809.0
6 TraesCS3B01G161800 chr3D 87.654 243 23 7 7478 7717 107665661 107665899 9.430000e-70 276.0
7 TraesCS3B01G161800 chr3D 78.019 323 33 25 273 570 107658934 107659243 1.650000e-37 169.0
8 TraesCS3B01G161800 chr3D 95.455 88 4 0 7322 7409 107665574 107665661 3.590000e-29 141.0
9 TraesCS3B01G161800 chr3D 76.806 263 45 12 3855 4109 343451616 343451362 6.000000e-27 134.0
10 TraesCS3B01G161800 chr3D 97.917 48 1 0 7560 7607 107665790 107665743 6.130000e-12 84.2
11 TraesCS3B01G161800 chr3A 93.554 2234 100 20 2714 4925 124193920 124191709 0.000000e+00 3288.0
12 TraesCS3B01G161800 chr3A 90.073 2327 142 47 468 2759 124196201 124193929 0.000000e+00 2935.0
13 TraesCS3B01G161800 chr3A 93.127 1615 80 11 4913 6501 124191195 124189586 0.000000e+00 2338.0
14 TraesCS3B01G161800 chr3A 91.378 1705 90 29 6673 8360 124189524 124187860 0.000000e+00 2281.0
15 TraesCS3B01G161800 chr3A 82.030 1202 113 63 8359 9528 124187828 124186698 0.000000e+00 928.0
16 TraesCS3B01G161800 chr5B 79.245 265 44 5 3858 4113 282708489 282708227 3.540000e-39 174.0
17 TraesCS3B01G161800 chr5B 79.245 265 44 5 3858 4113 282709107 282708845 3.540000e-39 174.0
18 TraesCS3B01G161800 chr4A 85.211 142 20 1 3824 3964 98552207 98552066 2.770000e-30 145.0
19 TraesCS3B01G161800 chr2D 77.444 266 41 14 3857 4113 168621573 168621828 3.590000e-29 141.0
20 TraesCS3B01G161800 chr2D 78.008 241 39 11 3880 4111 124796839 124796604 1.290000e-28 139.0
21 TraesCS3B01G161800 chr2B 77.593 241 38 12 3880 4113 177217375 177217144 2.160000e-26 132.0
22 TraesCS3B01G161800 chr2B 100.000 28 0 0 818 845 432973587 432973560 1.700000e-02 52.8
23 TraesCS3B01G161800 chr5A 80.000 185 29 6 3860 4040 332573377 332573197 7.770000e-26 130.0
24 TraesCS3B01G161800 chr7B 90.000 50 4 1 4041 4090 159509376 159509424 7.990000e-06 63.9
25 TraesCS3B01G161800 chr7A 92.500 40 3 0 809 848 162045052 162045013 3.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G161800 chr3B 158695247 158704774 9527 False 17595 17595 100.000000 1 9528 1 chr3B.!!$F1 9527
1 TraesCS3B01G161800 chr3D 107658934 107667826 8892 False 1675 3962 92.191125 273 9528 8 chr3D.!!$F1 9255
2 TraesCS3B01G161800 chr3A 124186698 124196201 9503 True 2354 3288 90.032400 468 9528 5 chr3A.!!$R1 9060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 597 0.028770 CGCGAAAACTCTGTTTGCCA 59.971 50.000 0.00 0.00 0.00 4.92 F
857 895 0.106167 TCGAATCCCCATCTCGGAGT 60.106 55.000 4.69 0.00 36.56 3.85 F
2391 2458 0.037882 CGTCTCTGGCATGTGACTGT 60.038 55.000 13.33 0.00 0.00 3.55 F
2625 2696 0.871722 TTGACCTGCAATCCGTTTCG 59.128 50.000 0.00 0.00 0.00 3.46 F
3328 3467 7.823745 AGAAAAATTGACCTGAGAGCTAAAA 57.176 32.000 0.00 0.00 0.00 1.52 F
3945 4084 1.134487 CCTTAACATGCACCACGCG 59.866 57.895 3.53 3.53 46.97 6.01 F
5720 6440 1.281656 GTCGTGGCAAAAGTTCCCG 59.718 57.895 0.00 0.00 0.00 5.14 F
6574 7323 0.801872 GTGCCGAATGTGTACATGCA 59.198 50.000 0.00 4.47 36.56 3.96 F
7266 8032 0.251165 TGGGGGCTCTTTGCTGTTAC 60.251 55.000 0.00 0.00 42.39 2.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1619 0.109132 CGCCAAGCACAAAATCCTCC 60.109 55.000 0.00 0.00 0.00 4.30 R
2625 2696 0.796312 CGTCACAACATACCTGCCAC 59.204 55.000 0.00 0.00 0.00 5.01 R
3476 3615 2.936919 TCGGATGAATTCCCATCAGG 57.063 50.000 2.27 0.00 43.49 3.86 R
3477 3616 3.748083 ACATCGGATGAATTCCCATCAG 58.252 45.455 23.98 2.23 43.49 2.90 R
4803 4952 0.611618 ATGCGGAAACAATGAGGCCA 60.612 50.000 5.01 0.00 0.00 5.36 R
5801 6545 1.654137 CCGTCAAATAATGCGCCGC 60.654 57.895 4.18 0.00 0.00 6.53 R
6709 7473 0.096281 ACGAACACGCACACACAAAG 59.904 50.000 0.00 0.00 0.00 2.77 R
8374 9310 1.095228 ACTGGTTGCAGGTTGTCGTG 61.095 55.000 0.00 0.00 0.00 4.35 R
8923 9879 1.061131 GTACATAACGCAGCAGCAGTG 59.939 52.381 0.82 0.00 42.27 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.593134 TTTTGCTTTGTTGTATTATTGAACTGT 57.407 25.926 0.00 0.00 0.00 3.55
52 53 8.572828 TTGCTTTGTTGTATTATTGAACTGTG 57.427 30.769 0.00 0.00 0.00 3.66
53 54 7.935520 TGCTTTGTTGTATTATTGAACTGTGA 58.064 30.769 0.00 0.00 0.00 3.58
54 55 8.575589 TGCTTTGTTGTATTATTGAACTGTGAT 58.424 29.630 0.00 0.00 0.00 3.06
55 56 8.853345 GCTTTGTTGTATTATTGAACTGTGATG 58.147 33.333 0.00 0.00 0.00 3.07
70 71 9.671279 TGAACTGTGATGAATTTGTGATATAGT 57.329 29.630 0.00 0.00 0.00 2.12
85 86 9.855021 TTGTGATATAGTATATGATTGACGTGG 57.145 33.333 7.41 0.00 0.00 4.94
86 87 9.238368 TGTGATATAGTATATGATTGACGTGGA 57.762 33.333 7.41 0.00 0.00 4.02
89 90 9.684448 GATATAGTATATGATTGACGTGGATGG 57.316 37.037 7.41 0.00 0.00 3.51
90 91 7.718334 ATAGTATATGATTGACGTGGATGGA 57.282 36.000 0.00 0.00 0.00 3.41
91 92 6.611613 AGTATATGATTGACGTGGATGGAT 57.388 37.500 0.00 0.00 0.00 3.41
92 93 7.009179 AGTATATGATTGACGTGGATGGATT 57.991 36.000 0.00 0.00 0.00 3.01
93 94 7.453393 AGTATATGATTGACGTGGATGGATTT 58.547 34.615 0.00 0.00 0.00 2.17
94 95 4.906065 ATGATTGACGTGGATGGATTTG 57.094 40.909 0.00 0.00 0.00 2.32
95 96 3.949132 TGATTGACGTGGATGGATTTGA 58.051 40.909 0.00 0.00 0.00 2.69
96 97 3.940852 TGATTGACGTGGATGGATTTGAG 59.059 43.478 0.00 0.00 0.00 3.02
97 98 3.417069 TTGACGTGGATGGATTTGAGT 57.583 42.857 0.00 0.00 0.00 3.41
98 99 4.545208 TTGACGTGGATGGATTTGAGTA 57.455 40.909 0.00 0.00 0.00 2.59
99 100 4.753516 TGACGTGGATGGATTTGAGTAT 57.246 40.909 0.00 0.00 0.00 2.12
100 101 5.097742 TGACGTGGATGGATTTGAGTATT 57.902 39.130 0.00 0.00 0.00 1.89
101 102 5.496556 TGACGTGGATGGATTTGAGTATTT 58.503 37.500 0.00 0.00 0.00 1.40
102 103 5.943416 TGACGTGGATGGATTTGAGTATTTT 59.057 36.000 0.00 0.00 0.00 1.82
103 104 6.432783 TGACGTGGATGGATTTGAGTATTTTT 59.567 34.615 0.00 0.00 0.00 1.94
124 125 5.773239 TTTTTATACGAGCAGTGTGTAGC 57.227 39.130 0.00 0.00 0.00 3.58
125 126 4.713824 TTTATACGAGCAGTGTGTAGCT 57.286 40.909 0.00 0.00 45.25 3.32
126 127 2.568696 ATACGAGCAGTGTGTAGCTG 57.431 50.000 0.00 0.00 42.04 4.24
127 128 0.526211 TACGAGCAGTGTGTAGCTGG 59.474 55.000 0.00 0.00 42.04 4.85
128 129 2.097038 CGAGCAGTGTGTAGCTGGC 61.097 63.158 0.00 0.00 42.04 4.85
129 130 1.743252 GAGCAGTGTGTAGCTGGCC 60.743 63.158 0.00 0.00 42.04 5.36
130 131 3.121030 GCAGTGTGTAGCTGGCCG 61.121 66.667 0.00 0.00 34.73 6.13
131 132 2.656646 CAGTGTGTAGCTGGCCGA 59.343 61.111 0.00 0.00 0.00 5.54
132 133 1.738099 CAGTGTGTAGCTGGCCGAC 60.738 63.158 0.00 0.00 0.00 4.79
133 134 2.207229 AGTGTGTAGCTGGCCGACA 61.207 57.895 0.00 0.00 0.00 4.35
142 143 2.780595 CTGGCCGACAGGGTATTTG 58.219 57.895 0.00 0.00 43.70 2.32
143 144 0.251916 CTGGCCGACAGGGTATTTGA 59.748 55.000 0.00 0.00 43.70 2.69
144 145 0.693622 TGGCCGACAGGGTATTTGAA 59.306 50.000 0.00 0.00 38.44 2.69
145 146 1.339631 TGGCCGACAGGGTATTTGAAG 60.340 52.381 0.00 0.00 38.44 3.02
146 147 1.379527 GCCGACAGGGTATTTGAAGG 58.620 55.000 0.00 0.00 38.44 3.46
147 148 2.017113 GCCGACAGGGTATTTGAAGGG 61.017 57.143 0.00 0.00 38.44 3.95
148 149 1.379527 CGACAGGGTATTTGAAGGGC 58.620 55.000 0.00 0.00 0.00 5.19
149 150 1.379527 GACAGGGTATTTGAAGGGCG 58.620 55.000 0.00 0.00 0.00 6.13
150 151 0.696501 ACAGGGTATTTGAAGGGCGT 59.303 50.000 0.00 0.00 0.00 5.68
151 152 1.074889 ACAGGGTATTTGAAGGGCGTT 59.925 47.619 0.00 0.00 0.00 4.84
152 153 1.472480 CAGGGTATTTGAAGGGCGTTG 59.528 52.381 0.00 0.00 0.00 4.10
153 154 0.815095 GGGTATTTGAAGGGCGTTGG 59.185 55.000 0.00 0.00 0.00 3.77
154 155 0.815095 GGTATTTGAAGGGCGTTGGG 59.185 55.000 0.00 0.00 0.00 4.12
155 156 0.172578 GTATTTGAAGGGCGTTGGGC 59.827 55.000 0.00 0.00 42.51 5.36
156 157 1.309499 TATTTGAAGGGCGTTGGGCG 61.309 55.000 0.00 0.00 44.92 6.13
165 166 3.726517 CGTTGGGCGCTGTTCAGG 61.727 66.667 7.64 0.00 0.00 3.86
166 167 3.365265 GTTGGGCGCTGTTCAGGG 61.365 66.667 7.64 11.62 0.00 4.45
167 168 3.884774 TTGGGCGCTGTTCAGGGT 61.885 61.111 7.64 0.00 0.00 4.34
168 169 3.842925 TTGGGCGCTGTTCAGGGTC 62.843 63.158 7.64 14.10 0.00 4.46
187 188 4.708386 CCGCCCGGGCTGTGTAAA 62.708 66.667 41.01 0.00 39.32 2.01
188 189 2.670251 CGCCCGGGCTGTGTAAAA 60.670 61.111 41.01 0.00 39.32 1.52
189 190 2.959372 GCCCGGGCTGTGTAAAAC 59.041 61.111 38.76 4.71 38.26 2.43
190 191 2.973316 GCCCGGGCTGTGTAAAACG 61.973 63.158 38.76 0.00 38.26 3.60
191 192 1.301874 CCCGGGCTGTGTAAAACGA 60.302 57.895 8.08 0.00 0.00 3.85
192 193 1.296056 CCCGGGCTGTGTAAAACGAG 61.296 60.000 8.08 0.00 0.00 4.18
193 194 0.601841 CCGGGCTGTGTAAAACGAGT 60.602 55.000 0.00 0.00 0.00 4.18
194 195 0.511221 CGGGCTGTGTAAAACGAGTG 59.489 55.000 0.00 0.00 0.00 3.51
195 196 0.237498 GGGCTGTGTAAAACGAGTGC 59.763 55.000 0.00 0.00 0.00 4.40
196 197 0.110823 GGCTGTGTAAAACGAGTGCG 60.111 55.000 0.00 0.00 44.79 5.34
197 198 0.721483 GCTGTGTAAAACGAGTGCGC 60.721 55.000 0.00 0.00 42.48 6.09
198 199 0.448861 CTGTGTAAAACGAGTGCGCG 60.449 55.000 0.00 0.00 42.48 6.86
199 200 1.154727 GTGTAAAACGAGTGCGCGG 60.155 57.895 8.83 0.00 42.48 6.46
200 201 2.311701 TGTAAAACGAGTGCGCGGG 61.312 57.895 8.83 0.00 42.48 6.13
201 202 3.416382 TAAAACGAGTGCGCGGGC 61.416 61.111 18.81 18.81 42.48 6.13
202 203 3.869473 TAAAACGAGTGCGCGGGCT 62.869 57.895 25.62 5.89 42.48 5.19
214 215 4.838152 CGGGCTGGGATGGTGTCG 62.838 72.222 0.00 0.00 0.00 4.35
240 241 2.508663 GCGTTAGCGACACCCCTC 60.509 66.667 2.07 0.00 41.33 4.30
241 242 2.967397 CGTTAGCGACACCCCTCA 59.033 61.111 0.00 0.00 41.33 3.86
242 243 1.290955 CGTTAGCGACACCCCTCAA 59.709 57.895 0.00 0.00 41.33 3.02
243 244 0.320073 CGTTAGCGACACCCCTCAAA 60.320 55.000 0.00 0.00 41.33 2.69
244 245 1.674817 CGTTAGCGACACCCCTCAAAT 60.675 52.381 0.00 0.00 41.33 2.32
245 246 2.433436 GTTAGCGACACCCCTCAAATT 58.567 47.619 0.00 0.00 0.00 1.82
246 247 2.107950 TAGCGACACCCCTCAAATTG 57.892 50.000 0.00 0.00 0.00 2.32
247 248 0.400213 AGCGACACCCCTCAAATTGA 59.600 50.000 0.00 0.00 0.00 2.57
248 249 1.004745 AGCGACACCCCTCAAATTGAT 59.995 47.619 0.00 0.00 0.00 2.57
249 250 1.401905 GCGACACCCCTCAAATTGATC 59.598 52.381 0.00 0.00 0.00 2.92
250 251 1.665679 CGACACCCCTCAAATTGATCG 59.334 52.381 0.00 0.00 0.00 3.69
251 252 2.711542 GACACCCCTCAAATTGATCGT 58.288 47.619 0.00 0.00 0.00 3.73
252 253 3.677700 CGACACCCCTCAAATTGATCGTA 60.678 47.826 0.00 0.00 0.00 3.43
253 254 3.606687 ACACCCCTCAAATTGATCGTAC 58.393 45.455 0.00 0.00 0.00 3.67
254 255 3.263425 ACACCCCTCAAATTGATCGTACT 59.737 43.478 0.00 0.00 0.00 2.73
255 256 4.468510 ACACCCCTCAAATTGATCGTACTA 59.531 41.667 0.00 0.00 0.00 1.82
256 257 4.809426 CACCCCTCAAATTGATCGTACTAC 59.191 45.833 0.00 0.00 0.00 2.73
257 258 4.141779 ACCCCTCAAATTGATCGTACTACC 60.142 45.833 0.00 0.00 0.00 3.18
258 259 4.101119 CCCCTCAAATTGATCGTACTACCT 59.899 45.833 0.00 0.00 0.00 3.08
259 260 5.303589 CCCCTCAAATTGATCGTACTACCTA 59.696 44.000 0.00 0.00 0.00 3.08
260 261 6.183360 CCCCTCAAATTGATCGTACTACCTAA 60.183 42.308 0.00 0.00 0.00 2.69
261 262 6.700520 CCCTCAAATTGATCGTACTACCTAAC 59.299 42.308 0.00 0.00 0.00 2.34
262 263 6.700520 CCTCAAATTGATCGTACTACCTAACC 59.299 42.308 0.00 0.00 0.00 2.85
263 264 7.414222 TCAAATTGATCGTACTACCTAACCT 57.586 36.000 0.00 0.00 0.00 3.50
264 265 7.486647 TCAAATTGATCGTACTACCTAACCTC 58.513 38.462 0.00 0.00 0.00 3.85
265 266 7.123098 TCAAATTGATCGTACTACCTAACCTCA 59.877 37.037 0.00 0.00 0.00 3.86
266 267 6.636562 ATTGATCGTACTACCTAACCTCAG 57.363 41.667 0.00 0.00 0.00 3.35
267 268 4.458397 TGATCGTACTACCTAACCTCAGG 58.542 47.826 0.00 0.00 41.87 3.86
268 269 2.648059 TCGTACTACCTAACCTCAGGC 58.352 52.381 0.00 0.00 39.53 4.85
269 270 2.025981 TCGTACTACCTAACCTCAGGCA 60.026 50.000 0.00 0.00 39.53 4.75
270 271 2.098770 CGTACTACCTAACCTCAGGCAC 59.901 54.545 0.00 0.00 39.53 5.01
271 272 1.569653 ACTACCTAACCTCAGGCACC 58.430 55.000 0.00 0.00 39.53 5.01
280 281 2.842462 TCAGGCACCACAGGACGT 60.842 61.111 0.00 0.00 0.00 4.34
311 312 2.134287 CGTCCGGGAGATCCATGGT 61.134 63.158 12.58 0.00 37.91 3.55
312 313 1.749033 GTCCGGGAGATCCATGGTC 59.251 63.158 12.58 8.86 37.91 4.02
313 314 1.048724 GTCCGGGAGATCCATGGTCA 61.049 60.000 12.58 0.00 37.91 4.02
338 342 3.636043 CGTGACAAGGCGCGTGTT 61.636 61.111 15.52 0.00 37.04 3.32
354 358 1.154413 GTTTGCGTCATCTGCGGTG 60.154 57.895 0.00 0.00 34.24 4.94
381 392 3.520862 GGGCGTCCGGTCGATGTA 61.521 66.667 25.18 0.00 0.00 2.29
383 394 1.153784 GGCGTCCGGTCGATGTAAA 60.154 57.895 25.18 0.00 0.00 2.01
384 395 0.737019 GGCGTCCGGTCGATGTAAAA 60.737 55.000 25.18 0.00 0.00 1.52
386 397 0.636733 CGTCCGGTCGATGTAAAACG 59.363 55.000 16.36 2.64 0.00 3.60
417 428 1.294659 GCTCGGAGCACAGTTCCTTG 61.295 60.000 24.42 0.00 41.89 3.61
422 433 2.594592 GCACAGTTCCTTGCGGGT 60.595 61.111 0.00 0.00 36.25 5.28
424 435 1.966451 CACAGTTCCTTGCGGGTCC 60.966 63.158 0.00 0.00 36.25 4.46
426 437 2.920912 AGTTCCTTGCGGGTCCGA 60.921 61.111 14.15 0.00 42.83 4.55
442 453 3.444751 CGACACGGAGAGAGAGAGA 57.555 57.895 0.00 0.00 0.00 3.10
444 455 1.134936 CGACACGGAGAGAGAGAGAGA 60.135 57.143 0.00 0.00 0.00 3.10
445 456 2.550978 GACACGGAGAGAGAGAGAGAG 58.449 57.143 0.00 0.00 0.00 3.20
446 457 2.167693 GACACGGAGAGAGAGAGAGAGA 59.832 54.545 0.00 0.00 0.00 3.10
447 458 2.168521 ACACGGAGAGAGAGAGAGAGAG 59.831 54.545 0.00 0.00 0.00 3.20
449 460 1.138859 CGGAGAGAGAGAGAGAGAGCA 59.861 57.143 0.00 0.00 0.00 4.26
450 461 2.565841 GGAGAGAGAGAGAGAGAGCAC 58.434 57.143 0.00 0.00 0.00 4.40
452 463 1.212935 AGAGAGAGAGAGAGAGCACCC 59.787 57.143 0.00 0.00 0.00 4.61
455 466 1.000993 GAGAGAGAGAGCACCCCCA 59.999 63.158 0.00 0.00 0.00 4.96
456 467 0.616111 GAGAGAGAGAGCACCCCCAA 60.616 60.000 0.00 0.00 0.00 4.12
458 469 0.915364 GAGAGAGAGCACCCCCAAAT 59.085 55.000 0.00 0.00 0.00 2.32
460 471 0.106967 GAGAGAGCACCCCCAAATCC 60.107 60.000 0.00 0.00 0.00 3.01
461 472 1.452108 GAGAGCACCCCCAAATCCG 60.452 63.158 0.00 0.00 0.00 4.18
462 473 1.910580 GAGAGCACCCCCAAATCCGA 61.911 60.000 0.00 0.00 0.00 4.55
463 474 1.452108 GAGCACCCCCAAATCCGAG 60.452 63.158 0.00 0.00 0.00 4.63
464 475 3.140814 GCACCCCCAAATCCGAGC 61.141 66.667 0.00 0.00 0.00 5.03
486 506 0.820891 CAGAATCCAATGGCCGAGGG 60.821 60.000 0.00 0.00 0.00 4.30
571 593 1.155424 TCCGCGCGAAAACTCTGTTT 61.155 50.000 34.63 0.00 0.00 2.83
575 597 0.028770 CGCGAAAACTCTGTTTGCCA 59.971 50.000 0.00 0.00 0.00 4.92
578 600 1.269051 CGAAAACTCTGTTTGCCACCC 60.269 52.381 0.00 0.00 0.00 4.61
579 601 0.744281 AAAACTCTGTTTGCCACCCG 59.256 50.000 0.00 0.00 0.00 5.28
580 602 0.106918 AAACTCTGTTTGCCACCCGA 60.107 50.000 0.00 0.00 0.00 5.14
582 604 1.966451 CTCTGTTTGCCACCCGACC 60.966 63.158 0.00 0.00 0.00 4.79
584 606 1.603455 CTGTTTGCCACCCGACCAT 60.603 57.895 0.00 0.00 0.00 3.55
585 607 1.586154 CTGTTTGCCACCCGACCATC 61.586 60.000 0.00 0.00 0.00 3.51
586 608 1.303317 GTTTGCCACCCGACCATCT 60.303 57.895 0.00 0.00 0.00 2.90
587 609 1.303236 TTTGCCACCCGACCATCTG 60.303 57.895 0.00 0.00 0.00 2.90
588 610 2.762969 TTTGCCACCCGACCATCTGG 62.763 60.000 0.00 0.00 42.17 3.86
594 616 1.227764 CCCGACCATCTGGCATCTG 60.228 63.158 0.00 0.00 39.32 2.90
614 636 3.774702 GGCGTTGCGTCGTCTTCC 61.775 66.667 0.00 0.00 32.43 3.46
651 677 4.806339 CCCCCTCCCTCGCCTCTT 62.806 72.222 0.00 0.00 0.00 2.85
653 679 3.157949 CCCTCCCTCGCCTCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
654 680 2.042435 CCTCCCTCGCCTCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
656 682 3.077556 TCCCTCGCCTCTTCCTGC 61.078 66.667 0.00 0.00 0.00 4.85
657 683 3.080121 CCCTCGCCTCTTCCTGCT 61.080 66.667 0.00 0.00 0.00 4.24
658 684 1.758514 CCCTCGCCTCTTCCTGCTA 60.759 63.158 0.00 0.00 0.00 3.49
659 685 1.118356 CCCTCGCCTCTTCCTGCTAT 61.118 60.000 0.00 0.00 0.00 2.97
662 688 0.747255 TCGCCTCTTCCTGCTATCAC 59.253 55.000 0.00 0.00 0.00 3.06
663 689 0.749649 CGCCTCTTCCTGCTATCACT 59.250 55.000 0.00 0.00 0.00 3.41
664 690 1.537776 CGCCTCTTCCTGCTATCACTG 60.538 57.143 0.00 0.00 0.00 3.66
665 691 1.809651 GCCTCTTCCTGCTATCACTGC 60.810 57.143 0.00 0.00 0.00 4.40
666 692 1.761784 CCTCTTCCTGCTATCACTGCT 59.238 52.381 0.00 0.00 0.00 4.24
667 693 2.961741 CCTCTTCCTGCTATCACTGCTA 59.038 50.000 0.00 0.00 0.00 3.49
668 694 3.243704 CCTCTTCCTGCTATCACTGCTAC 60.244 52.174 0.00 0.00 0.00 3.58
669 695 2.359214 TCTTCCTGCTATCACTGCTACG 59.641 50.000 0.00 0.00 0.00 3.51
670 696 2.052782 TCCTGCTATCACTGCTACGA 57.947 50.000 0.00 0.00 0.00 3.43
702 728 1.370414 CAGGCAACGCGTTCCAAAG 60.370 57.895 29.35 18.54 46.39 2.77
703 729 1.822186 AGGCAACGCGTTCCAAAGT 60.822 52.632 29.35 14.73 46.39 2.66
708 734 2.520979 CAACGCGTTCCAAAGTTTTCA 58.479 42.857 23.92 0.00 0.00 2.69
723 749 4.143986 GTTTTCATTCAAAACCACCCCA 57.856 40.909 0.00 0.00 45.76 4.96
724 750 3.828875 TTTCATTCAAAACCACCCCAC 57.171 42.857 0.00 0.00 0.00 4.61
725 751 1.710816 TCATTCAAAACCACCCCACC 58.289 50.000 0.00 0.00 0.00 4.61
857 895 0.106167 TCGAATCCCCATCTCGGAGT 60.106 55.000 4.69 0.00 36.56 3.85
861 899 0.106167 ATCCCCATCTCGGAGTCGAA 60.106 55.000 4.69 0.00 45.47 3.71
862 900 0.106167 TCCCCATCTCGGAGTCGAAT 60.106 55.000 4.69 0.00 45.47 3.34
863 901 1.144298 TCCCCATCTCGGAGTCGAATA 59.856 52.381 4.69 0.00 45.47 1.75
865 903 2.563179 CCCCATCTCGGAGTCGAATAAT 59.437 50.000 4.69 0.00 45.47 1.28
867 905 3.367498 CCCATCTCGGAGTCGAATAATCC 60.367 52.174 4.69 0.00 45.47 3.01
868 906 3.367498 CCATCTCGGAGTCGAATAATCCC 60.367 52.174 4.69 0.00 45.47 3.85
869 907 2.940158 TCTCGGAGTCGAATAATCCCA 58.060 47.619 4.69 0.00 45.47 4.37
871 909 2.623889 CTCGGAGTCGAATAATCCCACT 59.376 50.000 0.00 0.00 45.47 4.00
888 939 3.646637 CCCACTCGACCTTAAATCCCTAT 59.353 47.826 0.00 0.00 0.00 2.57
889 940 4.836736 CCCACTCGACCTTAAATCCCTATA 59.163 45.833 0.00 0.00 0.00 1.31
893 945 5.774184 ACTCGACCTTAAATCCCTATACTCC 59.226 44.000 0.00 0.00 0.00 3.85
918 970 2.372890 CCGGAACCCTAAGGACCCC 61.373 68.421 0.00 0.00 36.73 4.95
1290 1346 2.867855 GCAGACCGAGGTGTGGACA 61.868 63.158 19.08 0.00 39.42 4.02
1293 1349 2.122989 ACCGAGGTGTGGACAGGT 60.123 61.111 0.00 0.00 0.00 4.00
1374 1430 1.672356 CTCGGGCTGTTTCAGTGGG 60.672 63.158 0.00 0.00 33.43 4.61
1485 1541 2.751436 GCTGCTGGAAATGCCGGA 60.751 61.111 5.05 0.00 46.81 5.14
1563 1619 2.035321 GAGAGAGGATTTCTACTGGCCG 59.965 54.545 0.00 0.00 35.87 6.13
1689 1745 4.016706 AACTCTTGCGTCCCCGGG 62.017 66.667 15.80 15.80 33.68 5.73
1751 1811 5.867174 GCCAAAACAGGGTAATTTATCACAC 59.133 40.000 0.00 0.00 0.00 3.82
1852 1915 0.179004 TTCCGTGGGCTCACATTGTT 60.179 50.000 18.70 0.00 43.79 2.83
2164 2227 2.519377 TTGGACGTGTGGAGTTGTAG 57.481 50.000 0.00 0.00 0.00 2.74
2173 2236 3.506455 GTGTGGAGTTGTAGTAGCTGAGA 59.494 47.826 0.00 0.00 0.00 3.27
2273 2336 4.218417 AGGTGGTTGTTAAATTAGCAGCAG 59.782 41.667 6.12 0.00 39.47 4.24
2274 2337 3.920412 GTGGTTGTTAAATTAGCAGCAGC 59.080 43.478 6.12 0.00 42.56 5.25
2275 2338 3.571828 TGGTTGTTAAATTAGCAGCAGCA 59.428 39.130 3.17 0.00 45.49 4.41
2296 2359 5.181245 AGCATGTTGTGATAGTTGTGGTAAC 59.819 40.000 0.00 0.00 0.00 2.50
2302 2365 4.171754 GTGATAGTTGTGGTAACCGTCTC 58.828 47.826 0.00 0.00 0.00 3.36
2313 2376 0.613777 AACCGTCTCCCATCCAAGAC 59.386 55.000 0.00 0.00 38.81 3.01
2391 2458 0.037882 CGTCTCTGGCATGTGACTGT 60.038 55.000 13.33 0.00 0.00 3.55
2392 2459 1.436600 GTCTCTGGCATGTGACTGTG 58.563 55.000 0.00 0.00 0.00 3.66
2415 2483 2.416547 CCAAGGTGCTTCGTATGTTCTG 59.583 50.000 0.00 0.00 0.00 3.02
2435 2504 8.922676 TGTTCTGTTAACTCATTCGTTTCTATC 58.077 33.333 7.22 0.00 0.00 2.08
2441 2510 9.784680 GTTAACTCATTCGTTTCTATCTAGTGA 57.215 33.333 0.00 0.00 0.00 3.41
2488 2559 3.132629 CAGCTATTGCAGTCAAAGCAG 57.867 47.619 1.12 0.00 43.75 4.24
2543 2614 1.677820 CGGATGGTGGAAACTGGGTAC 60.678 57.143 0.00 0.00 0.00 3.34
2625 2696 0.871722 TTGACCTGCAATCCGTTTCG 59.128 50.000 0.00 0.00 0.00 3.46
2885 3014 8.506168 AGAGAGTATTGAAAGTTGAACAAACA 57.494 30.769 0.00 0.00 41.61 2.83
3328 3467 7.823745 AGAAAAATTGACCTGAGAGCTAAAA 57.176 32.000 0.00 0.00 0.00 1.52
3476 3615 3.507622 CCCTTTGAGGATTGGTCACTTTC 59.492 47.826 0.00 0.00 37.67 2.62
3477 3616 3.507622 CCTTTGAGGATTGGTCACTTTCC 59.492 47.826 0.00 0.00 37.67 3.13
3511 3650 4.339530 TCATCCGATGTTTAGAGACCAGAG 59.660 45.833 8.24 0.00 0.00 3.35
3945 4084 1.134487 CCTTAACATGCACCACGCG 59.866 57.895 3.53 3.53 46.97 6.01
4082 4227 6.418057 TTGAAATAATTGCAACCAAGTCCT 57.582 33.333 0.00 0.00 33.80 3.85
4209 4354 4.803452 TGGTGGGAATTTCAAGTCTTCTT 58.197 39.130 0.00 0.00 0.00 2.52
4309 4455 8.739039 TGGTTGGTGATTTTAATATGACTTCAG 58.261 33.333 0.00 0.00 0.00 3.02
4312 4458 9.513906 TTGGTGATTTTAATATGACTTCAGACA 57.486 29.630 0.00 0.00 0.00 3.41
4845 4994 3.007182 CACAAACAGGGCTCCAATTGATT 59.993 43.478 7.12 0.00 0.00 2.57
5026 5701 9.710979 TTCTAATGTTTTCTTGTCTTGTTTACG 57.289 29.630 0.00 0.00 0.00 3.18
5314 5989 5.991606 TCTGTGTTCAATCACCTTACTCTTG 59.008 40.000 0.00 0.00 37.51 3.02
5493 6171 8.090214 CCTTTTTGTAGTGGAAATTGTCATCAT 58.910 33.333 0.00 0.00 0.00 2.45
5504 6182 9.531942 TGGAAATTGTCATCATAATATGTTTGC 57.468 29.630 0.00 0.00 0.00 3.68
5505 6183 9.531942 GGAAATTGTCATCATAATATGTTTGCA 57.468 29.630 0.00 0.00 0.00 4.08
5511 6189 9.517868 TGTCATCATAATATGTTTGCATATCCA 57.482 29.630 0.00 0.00 44.90 3.41
5534 6212 9.374711 TCCATTTTCTTTAATTTAACCTCCACT 57.625 29.630 0.00 0.00 0.00 4.00
5535 6213 9.639601 CCATTTTCTTTAATTTAACCTCCACTC 57.360 33.333 0.00 0.00 0.00 3.51
5666 6386 8.800370 TTCTGTGTATTATTGCTGTGGATTAA 57.200 30.769 0.00 0.00 0.00 1.40
5688 6408 8.760103 TTAACAAGTTTTTACCACCAACTTTC 57.240 30.769 0.00 0.00 38.43 2.62
5720 6440 1.281656 GTCGTGGCAAAAGTTCCCG 59.718 57.895 0.00 0.00 0.00 5.14
5757 6478 3.244078 TGTGTCGTTGCTCAAATACTCCT 60.244 43.478 0.00 0.00 0.00 3.69
5803 6547 7.216317 GCATAACTTGATACAACTGTTTAAGCG 59.784 37.037 0.00 0.00 0.00 4.68
5819 6563 1.654137 GCGGCGCATTATTTGACGG 60.654 57.895 29.21 0.00 0.00 4.79
5843 6587 2.693074 ACATTTTCTGGCGTTTGTTCCT 59.307 40.909 0.00 0.00 0.00 3.36
5936 6681 6.778821 TGAAAGAAATGGTAGGAAGATGACA 58.221 36.000 0.00 0.00 0.00 3.58
6055 6802 5.473504 ACAATTCTAAGTTGGCTTCACGATT 59.526 36.000 0.00 0.00 36.22 3.34
6057 6804 3.334691 TCTAAGTTGGCTTCACGATTGG 58.665 45.455 0.00 0.00 36.22 3.16
6090 6837 6.609616 ACTTCCTTTTGTGTAATCTTTTGGGA 59.390 34.615 0.00 0.00 0.00 4.37
6169 6916 2.827322 TGGAACTGGCATGATTTTGGAG 59.173 45.455 0.00 0.00 0.00 3.86
6331 7078 5.049828 GAGTGTTCTCCACCAAATTTTTGG 58.950 41.667 18.31 18.31 46.39 3.28
6374 7121 7.344352 ACAATCTCCTTCAAGACTAGCTAAGAT 59.656 37.037 0.00 0.00 0.00 2.40
6377 7124 4.036971 TCCTTCAAGACTAGCTAAGATCGC 59.963 45.833 0.00 0.00 0.00 4.58
6492 7239 4.864704 TTATCTTTGTTTTCTGCACCCC 57.135 40.909 0.00 0.00 0.00 4.95
6526 7275 3.634397 CCCCCTCATACGCATATCATT 57.366 47.619 0.00 0.00 0.00 2.57
6527 7276 3.273434 CCCCCTCATACGCATATCATTG 58.727 50.000 0.00 0.00 0.00 2.82
6528 7277 3.307691 CCCCCTCATACGCATATCATTGT 60.308 47.826 0.00 0.00 0.00 2.71
6529 7278 4.081142 CCCCCTCATACGCATATCATTGTA 60.081 45.833 0.00 0.00 0.00 2.41
6530 7279 5.396772 CCCCCTCATACGCATATCATTGTAT 60.397 44.000 0.00 0.00 0.00 2.29
6531 7280 6.115446 CCCCTCATACGCATATCATTGTATT 58.885 40.000 0.00 0.00 0.00 1.89
6532 7281 6.037500 CCCCTCATACGCATATCATTGTATTG 59.962 42.308 0.00 0.00 0.00 1.90
6533 7282 6.595326 CCCTCATACGCATATCATTGTATTGT 59.405 38.462 0.00 0.00 0.00 2.71
6534 7283 7.201556 CCCTCATACGCATATCATTGTATTGTC 60.202 40.741 0.00 0.00 0.00 3.18
6535 7284 7.331687 CCTCATACGCATATCATTGTATTGTCA 59.668 37.037 0.00 0.00 0.00 3.58
6536 7285 8.017587 TCATACGCATATCATTGTATTGTCAC 57.982 34.615 0.00 0.00 0.00 3.67
6537 7286 7.655328 TCATACGCATATCATTGTATTGTCACA 59.345 33.333 0.00 0.00 0.00 3.58
6538 7287 6.048073 ACGCATATCATTGTATTGTCACAC 57.952 37.500 0.00 0.00 0.00 3.82
6539 7288 5.132576 CGCATATCATTGTATTGTCACACG 58.867 41.667 0.00 0.00 0.00 4.49
6540 7289 5.051106 CGCATATCATTGTATTGTCACACGA 60.051 40.000 0.00 0.00 0.00 4.35
6541 7290 6.346838 CGCATATCATTGTATTGTCACACGAT 60.347 38.462 0.00 0.00 0.00 3.73
6542 7291 7.148820 CGCATATCATTGTATTGTCACACGATA 60.149 37.037 0.00 0.00 0.00 2.92
6543 7292 8.659491 GCATATCATTGTATTGTCACACGATAT 58.341 33.333 0.00 0.00 28.03 1.63
6547 7296 9.981114 ATCATTGTATTGTCACACGATATAAGA 57.019 29.630 0.00 0.00 31.80 2.10
6548 7297 9.810545 TCATTGTATTGTCACACGATATAAGAA 57.189 29.630 0.00 0.00 31.80 2.52
6552 7301 9.863845 TGTATTGTCACACGATATAAGAAAAGA 57.136 29.630 0.00 0.00 28.03 2.52
6554 7303 8.771920 ATTGTCACACGATATAAGAAAAGACA 57.228 30.769 0.00 0.00 0.00 3.41
6555 7304 7.812309 TGTCACACGATATAAGAAAAGACAG 57.188 36.000 0.00 0.00 0.00 3.51
6556 7305 7.375834 TGTCACACGATATAAGAAAAGACAGT 58.624 34.615 0.00 0.00 0.00 3.55
6557 7306 7.328493 TGTCACACGATATAAGAAAAGACAGTG 59.672 37.037 0.00 0.00 0.00 3.66
6558 7307 6.310467 TCACACGATATAAGAAAAGACAGTGC 59.690 38.462 0.00 0.00 0.00 4.40
6559 7308 5.581085 ACACGATATAAGAAAAGACAGTGCC 59.419 40.000 0.00 0.00 0.00 5.01
6560 7309 4.804139 ACGATATAAGAAAAGACAGTGCCG 59.196 41.667 0.00 0.00 0.00 5.69
6561 7310 5.041287 CGATATAAGAAAAGACAGTGCCGA 58.959 41.667 0.00 0.00 0.00 5.54
6562 7311 5.518847 CGATATAAGAAAAGACAGTGCCGAA 59.481 40.000 0.00 0.00 0.00 4.30
6563 7312 6.201044 CGATATAAGAAAAGACAGTGCCGAAT 59.799 38.462 0.00 0.00 0.00 3.34
6564 7313 3.904136 AAGAAAAGACAGTGCCGAATG 57.096 42.857 0.00 0.00 0.00 2.67
6565 7314 2.851195 AGAAAAGACAGTGCCGAATGT 58.149 42.857 0.00 0.00 0.00 2.71
6566 7315 2.549754 AGAAAAGACAGTGCCGAATGTG 59.450 45.455 0.00 0.00 0.00 3.21
6567 7316 1.967319 AAAGACAGTGCCGAATGTGT 58.033 45.000 0.00 0.00 0.00 3.72
6568 7317 2.831685 AAGACAGTGCCGAATGTGTA 57.168 45.000 0.00 0.00 0.00 2.90
6569 7318 2.080286 AGACAGTGCCGAATGTGTAC 57.920 50.000 0.00 0.00 0.00 2.90
6570 7319 1.343142 AGACAGTGCCGAATGTGTACA 59.657 47.619 0.00 0.00 0.00 2.90
6571 7320 2.028112 AGACAGTGCCGAATGTGTACAT 60.028 45.455 0.00 0.00 38.41 2.29
6572 7321 2.076100 ACAGTGCCGAATGTGTACATG 58.924 47.619 0.00 0.00 36.56 3.21
6573 7322 1.086696 AGTGCCGAATGTGTACATGC 58.913 50.000 0.00 0.00 36.56 4.06
6574 7323 0.801872 GTGCCGAATGTGTACATGCA 59.198 50.000 0.00 4.47 36.56 3.96
6575 7324 1.401552 GTGCCGAATGTGTACATGCAT 59.598 47.619 0.00 0.00 35.95 3.96
6576 7325 2.611751 GTGCCGAATGTGTACATGCATA 59.388 45.455 0.00 0.00 35.95 3.14
6577 7326 3.064682 GTGCCGAATGTGTACATGCATAA 59.935 43.478 0.00 0.00 35.95 1.90
6578 7327 3.691609 TGCCGAATGTGTACATGCATAAA 59.308 39.130 0.00 0.00 36.56 1.40
6579 7328 4.337836 TGCCGAATGTGTACATGCATAAAT 59.662 37.500 0.00 0.00 36.56 1.40
6580 7329 4.911610 GCCGAATGTGTACATGCATAAATC 59.088 41.667 0.00 0.00 36.56 2.17
6581 7330 5.277974 GCCGAATGTGTACATGCATAAATCT 60.278 40.000 0.00 0.00 36.56 2.40
6582 7331 6.365839 CCGAATGTGTACATGCATAAATCTC 58.634 40.000 0.00 0.00 36.56 2.75
6583 7332 6.203530 CCGAATGTGTACATGCATAAATCTCT 59.796 38.462 0.00 0.00 36.56 3.10
6584 7333 7.384932 CCGAATGTGTACATGCATAAATCTCTA 59.615 37.037 0.00 0.00 36.56 2.43
6585 7334 8.764287 CGAATGTGTACATGCATAAATCTCTAA 58.236 33.333 0.00 0.00 36.56 2.10
6587 7336 9.836864 AATGTGTACATGCATAAATCTCTAAGA 57.163 29.630 0.00 0.00 36.56 2.10
6588 7337 8.877808 TGTGTACATGCATAAATCTCTAAGAG 57.122 34.615 0.00 0.00 0.00 2.85
6589 7338 8.695456 TGTGTACATGCATAAATCTCTAAGAGA 58.305 33.333 0.00 0.00 43.20 3.10
6626 7375 8.753497 ATTCATTCCTACTAATCTTTTGGACC 57.247 34.615 0.00 0.00 0.00 4.46
6638 7387 4.457466 TCTTTTGGACCTTACCTTGTGAC 58.543 43.478 0.00 0.00 0.00 3.67
6645 7394 5.659079 TGGACCTTACCTTGTGACAATTTTT 59.341 36.000 0.00 0.00 0.00 1.94
6649 7398 6.816140 ACCTTACCTTGTGACAATTTTTGTTG 59.184 34.615 0.00 0.00 45.52 3.33
6676 7440 9.976511 CTAGTTCATTTATACTTATTCGGACCA 57.023 33.333 0.00 0.00 0.00 4.02
6709 7473 8.882736 CATTTTTCCTGTATAATTTCTTTGCCC 58.117 33.333 0.00 0.00 0.00 5.36
6710 7474 7.790782 TTTTCCTGTATAATTTCTTTGCCCT 57.209 32.000 0.00 0.00 0.00 5.19
6718 7482 4.486125 AATTTCTTTGCCCTTTGTGTGT 57.514 36.364 0.00 0.00 0.00 3.72
6970 7736 5.482878 AGGATTTGATTGAGGCTTTGAACAT 59.517 36.000 0.00 0.00 0.00 2.71
7160 7926 3.181520 CGATCGTGGTTCTTAAAAGGCTG 60.182 47.826 7.03 0.00 0.00 4.85
7266 8032 0.251165 TGGGGGCTCTTTGCTGTTAC 60.251 55.000 0.00 0.00 42.39 2.50
7297 8063 2.031870 GAGGGGCAAATGGTAATCACC 58.968 52.381 0.00 0.00 46.00 4.02
7309 8075 4.016113 GGTAATCACCGCAGACATTTTC 57.984 45.455 0.00 0.00 34.36 2.29
7310 8076 3.689649 GGTAATCACCGCAGACATTTTCT 59.310 43.478 0.00 0.00 34.36 2.52
7311 8077 4.156008 GGTAATCACCGCAGACATTTTCTT 59.844 41.667 0.00 0.00 34.36 2.52
7312 8078 4.425577 AATCACCGCAGACATTTTCTTC 57.574 40.909 0.00 0.00 28.96 2.87
7313 8079 3.126001 TCACCGCAGACATTTTCTTCT 57.874 42.857 0.00 0.00 28.96 2.85
7314 8080 3.476552 TCACCGCAGACATTTTCTTCTT 58.523 40.909 0.00 0.00 28.96 2.52
7315 8081 3.498397 TCACCGCAGACATTTTCTTCTTC 59.502 43.478 0.00 0.00 28.96 2.87
7316 8082 3.499918 CACCGCAGACATTTTCTTCTTCT 59.500 43.478 0.00 0.00 28.96 2.85
7317 8083 4.023707 CACCGCAGACATTTTCTTCTTCTT 60.024 41.667 0.00 0.00 28.96 2.52
7318 8084 4.214332 ACCGCAGACATTTTCTTCTTCTTC 59.786 41.667 0.00 0.00 28.96 2.87
7319 8085 4.214119 CCGCAGACATTTTCTTCTTCTTCA 59.786 41.667 0.00 0.00 28.96 3.02
7320 8086 5.277974 CCGCAGACATTTTCTTCTTCTTCAA 60.278 40.000 0.00 0.00 28.96 2.69
7321 8087 5.622856 CGCAGACATTTTCTTCTTCTTCAAC 59.377 40.000 0.00 0.00 28.96 3.18
7322 8088 6.498304 GCAGACATTTTCTTCTTCTTCAACA 58.502 36.000 0.00 0.00 28.96 3.33
7323 8089 6.636044 GCAGACATTTTCTTCTTCTTCAACAG 59.364 38.462 0.00 0.00 28.96 3.16
7371 8166 4.260907 GCACATGCACTGACATACCATTAG 60.261 45.833 0.00 0.00 41.59 1.73
7446 8241 9.069078 CAATTTGATTAAATGTGCACTGTCTAG 57.931 33.333 19.41 0.00 36.65 2.43
7447 8242 7.977789 TTTGATTAAATGTGCACTGTCTAGA 57.022 32.000 19.41 0.00 0.00 2.43
7448 8243 8.565896 TTTGATTAAATGTGCACTGTCTAGAT 57.434 30.769 19.41 0.00 0.00 1.98
7467 8262 8.821894 GTCTAGATTACAGCAGATAACTTTTGG 58.178 37.037 0.00 0.00 0.00 3.28
7485 8283 4.524316 TTGGTTGCTTGATCTCCAATTG 57.476 40.909 0.00 0.00 33.95 2.32
7496 8294 7.571983 GCTTGATCTCCAATTGGTGAATATACG 60.572 40.741 27.95 16.77 40.59 3.06
7548 8346 6.584488 TGAATATAATTGGCTGCAATGCTTT 58.416 32.000 6.82 0.00 0.00 3.51
7591 8389 9.935241 TGTAATTGGTTTGTTGTGCATAATTAT 57.065 25.926 0.00 0.00 0.00 1.28
7595 8393 6.568869 TGGTTTGTTGTGCATAATTATAGGC 58.431 36.000 0.00 0.00 39.23 3.93
7596 8394 6.153510 TGGTTTGTTGTGCATAATTATAGGCA 59.846 34.615 0.00 6.41 45.74 4.75
7916 8814 9.403583 TGTTTTAGTTGGTTCTCTACTTTCAAT 57.596 29.630 0.00 0.00 0.00 2.57
7937 8835 8.393671 TCAATTATAACGGTTTAACTGGTGTT 57.606 30.769 4.51 3.34 39.98 3.32
7945 8843 6.523840 ACGGTTTAACTGGTGTTACTAATCA 58.476 36.000 8.89 0.00 38.26 2.57
8042 8941 4.816385 AGTTTGATGTTCTGACGTTGTGAT 59.184 37.500 0.00 0.00 0.00 3.06
8045 8944 5.749596 TGATGTTCTGACGTTGTGATTTT 57.250 34.783 0.00 0.00 0.00 1.82
8312 9215 1.065564 GCCAGGAGAGATGTTTCAGCT 60.066 52.381 0.00 0.00 30.65 4.24
8341 9244 5.162075 AGAACTGACGTACTGCTTCATAAC 58.838 41.667 0.00 0.00 0.00 1.89
8342 9245 3.846360 ACTGACGTACTGCTTCATAACC 58.154 45.455 0.00 0.00 0.00 2.85
8345 9248 2.167900 GACGTACTGCTTCATAACCCCT 59.832 50.000 0.00 0.00 0.00 4.79
8374 9310 1.069432 TCAGTCGCGTTGAGAGTGTAC 60.069 52.381 5.77 0.00 39.41 2.90
8417 9353 1.625818 TCTTCTTTCTGACCCCTCTGC 59.374 52.381 0.00 0.00 0.00 4.26
8421 9357 1.627834 CTTTCTGACCCCTCTGCTTCT 59.372 52.381 0.00 0.00 0.00 2.85
8634 9571 3.058160 GCCGTCAGCATGCAACCT 61.058 61.111 21.98 0.00 42.97 3.50
8637 9574 1.499056 CGTCAGCATGCAACCTGTC 59.501 57.895 21.98 6.16 34.76 3.51
8641 9578 0.956633 CAGCATGCAACCTGTCTGTT 59.043 50.000 21.98 0.00 0.00 3.16
8642 9579 2.153645 CAGCATGCAACCTGTCTGTTA 58.846 47.619 21.98 0.00 0.00 2.41
8782 9723 9.880157 ATTGCTGTAATAAATTGATGCTTTCTT 57.120 25.926 0.00 0.00 0.00 2.52
8783 9724 8.915871 TGCTGTAATAAATTGATGCTTTCTTC 57.084 30.769 0.00 0.00 0.00 2.87
8785 9726 9.230932 GCTGTAATAAATTGATGCTTTCTTCTC 57.769 33.333 0.00 0.00 0.00 2.87
8883 9832 3.942130 TTCGTGTGACATCTCAGATGT 57.058 42.857 20.78 20.78 30.30 3.06
8933 9889 1.001293 TCTCTGTTACCACTGCTGCTG 59.999 52.381 4.89 4.89 0.00 4.41
8935 9891 1.904852 CTGTTACCACTGCTGCTGCG 61.905 60.000 11.21 8.29 43.34 5.18
8937 9893 1.227823 TTACCACTGCTGCTGCGTT 60.228 52.632 11.21 0.00 43.34 4.84
8938 9894 0.034198 TTACCACTGCTGCTGCGTTA 59.966 50.000 11.21 0.62 43.34 3.18
9083 10039 1.380302 GGGTGGCCAGAATGTCAGT 59.620 57.895 5.11 0.00 0.00 3.41
9089 10045 0.678048 GCCAGAATGTCAGTGACCCC 60.678 60.000 20.43 9.31 0.00 4.95
9094 10050 0.836400 AATGTCAGTGACCCCTCCGT 60.836 55.000 20.43 0.00 0.00 4.69
9108 10064 4.135153 CCGTCTCTCCCGCTGGTG 62.135 72.222 0.00 0.00 0.00 4.17
9272 10262 1.153086 GTGGGCGAGGAAGATGCAT 60.153 57.895 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.593134 ACAGTTCAATAATACAACAAAGCAAAA 57.407 25.926 0.00 0.00 0.00 2.44
26 27 9.029243 CACAGTTCAATAATACAACAAAGCAAA 57.971 29.630 0.00 0.00 0.00 3.68
27 28 8.409371 TCACAGTTCAATAATACAACAAAGCAA 58.591 29.630 0.00 0.00 0.00 3.91
28 29 7.935520 TCACAGTTCAATAATACAACAAAGCA 58.064 30.769 0.00 0.00 0.00 3.91
29 30 8.853345 CATCACAGTTCAATAATACAACAAAGC 58.147 33.333 0.00 0.00 0.00 3.51
44 45 9.671279 ACTATATCACAAATTCATCACAGTTCA 57.329 29.630 0.00 0.00 0.00 3.18
59 60 9.855021 CCACGTCAATCATATACTATATCACAA 57.145 33.333 0.00 0.00 0.00 3.33
60 61 9.238368 TCCACGTCAATCATATACTATATCACA 57.762 33.333 0.00 0.00 0.00 3.58
63 64 9.684448 CCATCCACGTCAATCATATACTATATC 57.316 37.037 0.00 0.00 0.00 1.63
64 65 9.421399 TCCATCCACGTCAATCATATACTATAT 57.579 33.333 0.00 0.00 0.00 0.86
65 66 8.817092 TCCATCCACGTCAATCATATACTATA 57.183 34.615 0.00 0.00 0.00 1.31
66 67 7.718334 TCCATCCACGTCAATCATATACTAT 57.282 36.000 0.00 0.00 0.00 2.12
67 68 7.718334 ATCCATCCACGTCAATCATATACTA 57.282 36.000 0.00 0.00 0.00 1.82
68 69 6.611613 ATCCATCCACGTCAATCATATACT 57.388 37.500 0.00 0.00 0.00 2.12
69 70 7.387673 TCAAATCCATCCACGTCAATCATATAC 59.612 37.037 0.00 0.00 0.00 1.47
70 71 7.449247 TCAAATCCATCCACGTCAATCATATA 58.551 34.615 0.00 0.00 0.00 0.86
71 72 6.298361 TCAAATCCATCCACGTCAATCATAT 58.702 36.000 0.00 0.00 0.00 1.78
72 73 5.679601 TCAAATCCATCCACGTCAATCATA 58.320 37.500 0.00 0.00 0.00 2.15
73 74 4.525996 TCAAATCCATCCACGTCAATCAT 58.474 39.130 0.00 0.00 0.00 2.45
74 75 3.940852 CTCAAATCCATCCACGTCAATCA 59.059 43.478 0.00 0.00 0.00 2.57
75 76 3.941483 ACTCAAATCCATCCACGTCAATC 59.059 43.478 0.00 0.00 0.00 2.67
76 77 3.955471 ACTCAAATCCATCCACGTCAAT 58.045 40.909 0.00 0.00 0.00 2.57
77 78 3.417069 ACTCAAATCCATCCACGTCAA 57.583 42.857 0.00 0.00 0.00 3.18
78 79 4.753516 ATACTCAAATCCATCCACGTCA 57.246 40.909 0.00 0.00 0.00 4.35
79 80 6.436843 AAAATACTCAAATCCATCCACGTC 57.563 37.500 0.00 0.00 0.00 4.34
80 81 6.834168 AAAAATACTCAAATCCATCCACGT 57.166 33.333 0.00 0.00 0.00 4.49
102 103 5.347635 CAGCTACACACTGCTCGTATAAAAA 59.652 40.000 0.00 0.00 37.44 1.94
103 104 4.862574 CAGCTACACACTGCTCGTATAAAA 59.137 41.667 0.00 0.00 37.44 1.52
104 105 4.421058 CAGCTACACACTGCTCGTATAAA 58.579 43.478 0.00 0.00 37.44 1.40
105 106 3.181490 CCAGCTACACACTGCTCGTATAA 60.181 47.826 0.00 0.00 37.44 0.98
106 107 2.357952 CCAGCTACACACTGCTCGTATA 59.642 50.000 0.00 0.00 37.44 1.47
107 108 1.135139 CCAGCTACACACTGCTCGTAT 59.865 52.381 0.00 0.00 37.44 3.06
108 109 0.526211 CCAGCTACACACTGCTCGTA 59.474 55.000 0.00 0.00 37.44 3.43
109 110 1.290324 CCAGCTACACACTGCTCGT 59.710 57.895 0.00 0.00 37.44 4.18
110 111 2.097038 GCCAGCTACACACTGCTCG 61.097 63.158 0.00 0.00 37.44 5.03
111 112 1.743252 GGCCAGCTACACACTGCTC 60.743 63.158 0.00 0.00 37.44 4.26
112 113 2.348998 GGCCAGCTACACACTGCT 59.651 61.111 0.00 0.00 40.54 4.24
113 114 3.121030 CGGCCAGCTACACACTGC 61.121 66.667 2.24 0.00 33.65 4.40
114 115 1.738099 GTCGGCCAGCTACACACTG 60.738 63.158 2.24 0.00 34.82 3.66
115 116 2.159819 CTGTCGGCCAGCTACACACT 62.160 60.000 2.24 0.00 33.59 3.55
116 117 1.738099 CTGTCGGCCAGCTACACAC 60.738 63.158 2.24 0.00 33.59 3.82
117 118 2.656646 CTGTCGGCCAGCTACACA 59.343 61.111 2.24 0.00 33.59 3.72
118 119 2.125512 CCTGTCGGCCAGCTACAC 60.126 66.667 2.24 0.00 40.06 2.90
119 120 2.791613 TACCCTGTCGGCCAGCTACA 62.792 60.000 2.24 0.00 40.06 2.74
120 121 1.400530 ATACCCTGTCGGCCAGCTAC 61.401 60.000 2.24 0.00 40.06 3.58
121 122 0.689745 AATACCCTGTCGGCCAGCTA 60.690 55.000 2.24 0.00 40.06 3.32
122 123 1.562672 AAATACCCTGTCGGCCAGCT 61.563 55.000 2.24 0.00 40.06 4.24
123 124 1.077716 AAATACCCTGTCGGCCAGC 60.078 57.895 2.24 0.00 40.06 4.85
124 125 0.251916 TCAAATACCCTGTCGGCCAG 59.748 55.000 2.24 0.00 41.15 4.85
125 126 0.693622 TTCAAATACCCTGTCGGCCA 59.306 50.000 2.24 0.00 33.26 5.36
126 127 1.379527 CTTCAAATACCCTGTCGGCC 58.620 55.000 0.00 0.00 33.26 6.13
127 128 1.379527 CCTTCAAATACCCTGTCGGC 58.620 55.000 0.00 0.00 33.26 5.54
128 129 2.017113 GCCCTTCAAATACCCTGTCGG 61.017 57.143 0.00 0.00 37.81 4.79
129 130 1.379527 GCCCTTCAAATACCCTGTCG 58.620 55.000 0.00 0.00 0.00 4.35
130 131 1.339727 ACGCCCTTCAAATACCCTGTC 60.340 52.381 0.00 0.00 0.00 3.51
131 132 0.696501 ACGCCCTTCAAATACCCTGT 59.303 50.000 0.00 0.00 0.00 4.00
132 133 1.472480 CAACGCCCTTCAAATACCCTG 59.528 52.381 0.00 0.00 0.00 4.45
133 134 1.615919 CCAACGCCCTTCAAATACCCT 60.616 52.381 0.00 0.00 0.00 4.34
134 135 0.815095 CCAACGCCCTTCAAATACCC 59.185 55.000 0.00 0.00 0.00 3.69
135 136 0.815095 CCCAACGCCCTTCAAATACC 59.185 55.000 0.00 0.00 0.00 2.73
136 137 0.172578 GCCCAACGCCCTTCAAATAC 59.827 55.000 0.00 0.00 0.00 1.89
137 138 1.309499 CGCCCAACGCCCTTCAAATA 61.309 55.000 0.00 0.00 33.16 1.40
138 139 2.635443 CGCCCAACGCCCTTCAAAT 61.635 57.895 0.00 0.00 33.16 2.32
139 140 3.291383 CGCCCAACGCCCTTCAAA 61.291 61.111 0.00 0.00 33.16 2.69
149 150 3.365265 CCCTGAACAGCGCCCAAC 61.365 66.667 2.29 0.00 0.00 3.77
150 151 3.842925 GACCCTGAACAGCGCCCAA 62.843 63.158 2.29 0.00 0.00 4.12
151 152 4.329545 GACCCTGAACAGCGCCCA 62.330 66.667 2.29 0.00 0.00 5.36
172 173 2.959372 GTTTTACACAGCCCGGGC 59.041 61.111 39.29 39.29 42.33 6.13
173 174 1.296056 CTCGTTTTACACAGCCCGGG 61.296 60.000 19.09 19.09 0.00 5.73
174 175 0.601841 ACTCGTTTTACACAGCCCGG 60.602 55.000 0.00 0.00 0.00 5.73
175 176 0.511221 CACTCGTTTTACACAGCCCG 59.489 55.000 0.00 0.00 0.00 6.13
176 177 0.237498 GCACTCGTTTTACACAGCCC 59.763 55.000 0.00 0.00 0.00 5.19
177 178 0.110823 CGCACTCGTTTTACACAGCC 60.111 55.000 0.00 0.00 0.00 4.85
178 179 0.721483 GCGCACTCGTTTTACACAGC 60.721 55.000 0.30 0.00 38.14 4.40
179 180 0.448861 CGCGCACTCGTTTTACACAG 60.449 55.000 8.75 0.00 38.14 3.66
180 181 1.560770 CGCGCACTCGTTTTACACA 59.439 52.632 8.75 0.00 38.14 3.72
181 182 1.154727 CCGCGCACTCGTTTTACAC 60.155 57.895 8.75 0.00 38.14 2.90
182 183 2.311701 CCCGCGCACTCGTTTTACA 61.312 57.895 8.75 0.00 38.14 2.41
183 184 2.472934 CCCGCGCACTCGTTTTAC 59.527 61.111 8.75 0.00 38.14 2.01
184 185 3.416382 GCCCGCGCACTCGTTTTA 61.416 61.111 8.75 0.00 38.14 1.52
197 198 4.838152 CGACACCATCCCAGCCCG 62.838 72.222 0.00 0.00 0.00 6.13
219 220 4.130281 GGTGTCGCTAACGCACGC 62.130 66.667 6.89 1.77 42.98 5.34
220 221 3.475774 GGGTGTCGCTAACGCACG 61.476 66.667 6.89 0.00 42.98 5.34
221 222 3.116531 GGGGTGTCGCTAACGCAC 61.117 66.667 5.04 5.04 41.29 5.34
222 223 3.291101 GAGGGGTGTCGCTAACGCA 62.291 63.158 2.66 0.00 40.30 5.24
223 224 2.508663 GAGGGGTGTCGCTAACGC 60.509 66.667 0.00 0.00 39.84 4.84
224 225 0.320073 TTTGAGGGGTGTCGCTAACG 60.320 55.000 0.00 0.00 42.01 3.18
225 226 2.109425 ATTTGAGGGGTGTCGCTAAC 57.891 50.000 0.00 0.00 36.23 2.34
226 227 2.039216 TCAATTTGAGGGGTGTCGCTAA 59.961 45.455 0.00 0.00 36.23 3.09
227 228 1.626321 TCAATTTGAGGGGTGTCGCTA 59.374 47.619 0.00 0.00 36.23 4.26
228 229 0.400213 TCAATTTGAGGGGTGTCGCT 59.600 50.000 0.00 0.00 38.99 4.93
229 230 1.401905 GATCAATTTGAGGGGTGTCGC 59.598 52.381 5.21 0.00 0.00 5.19
230 231 1.665679 CGATCAATTTGAGGGGTGTCG 59.334 52.381 5.21 4.59 0.00 4.35
231 232 2.711542 ACGATCAATTTGAGGGGTGTC 58.288 47.619 5.21 0.00 0.00 3.67
232 233 2.879103 ACGATCAATTTGAGGGGTGT 57.121 45.000 5.21 0.00 0.00 4.16
233 234 3.873910 AGTACGATCAATTTGAGGGGTG 58.126 45.455 5.21 0.00 0.00 4.61
234 235 4.141779 GGTAGTACGATCAATTTGAGGGGT 60.142 45.833 5.21 5.37 0.00 4.95
235 236 4.101119 AGGTAGTACGATCAATTTGAGGGG 59.899 45.833 5.21 0.00 0.00 4.79
236 237 5.277857 AGGTAGTACGATCAATTTGAGGG 57.722 43.478 5.21 2.06 0.00 4.30
237 238 6.700520 GGTTAGGTAGTACGATCAATTTGAGG 59.299 42.308 5.21 2.41 0.00 3.86
238 239 7.490000 AGGTTAGGTAGTACGATCAATTTGAG 58.510 38.462 5.21 0.00 0.00 3.02
239 240 7.123098 TGAGGTTAGGTAGTACGATCAATTTGA 59.877 37.037 0.75 0.75 0.00 2.69
240 241 7.262772 TGAGGTTAGGTAGTACGATCAATTTG 58.737 38.462 0.00 0.00 0.00 2.32
241 242 7.414222 TGAGGTTAGGTAGTACGATCAATTT 57.586 36.000 0.00 0.00 0.00 1.82
242 243 6.040616 CCTGAGGTTAGGTAGTACGATCAATT 59.959 42.308 0.00 0.00 32.99 2.32
243 244 5.535406 CCTGAGGTTAGGTAGTACGATCAAT 59.465 44.000 0.00 0.00 32.99 2.57
244 245 4.885907 CCTGAGGTTAGGTAGTACGATCAA 59.114 45.833 0.00 0.00 32.99 2.57
245 246 4.458397 CCTGAGGTTAGGTAGTACGATCA 58.542 47.826 0.00 0.00 32.99 2.92
246 247 3.252944 GCCTGAGGTTAGGTAGTACGATC 59.747 52.174 0.00 0.00 40.11 3.69
247 248 3.220940 GCCTGAGGTTAGGTAGTACGAT 58.779 50.000 0.00 0.00 40.11 3.73
248 249 2.025981 TGCCTGAGGTTAGGTAGTACGA 60.026 50.000 0.00 0.00 40.11 3.43
249 250 2.098770 GTGCCTGAGGTTAGGTAGTACG 59.901 54.545 0.00 0.00 40.11 3.67
250 251 2.429971 GGTGCCTGAGGTTAGGTAGTAC 59.570 54.545 0.00 0.00 40.11 2.73
251 252 2.043389 TGGTGCCTGAGGTTAGGTAGTA 59.957 50.000 0.00 0.00 40.11 1.82
252 253 1.203262 TGGTGCCTGAGGTTAGGTAGT 60.203 52.381 0.00 0.00 40.11 2.73
253 254 1.207329 GTGGTGCCTGAGGTTAGGTAG 59.793 57.143 0.00 0.00 40.11 3.18
254 255 1.272807 GTGGTGCCTGAGGTTAGGTA 58.727 55.000 0.00 0.00 40.11 3.08
255 256 0.766674 TGTGGTGCCTGAGGTTAGGT 60.767 55.000 0.00 0.00 40.11 3.08
256 257 0.036010 CTGTGGTGCCTGAGGTTAGG 60.036 60.000 0.00 0.00 40.95 2.69
257 258 0.036010 CCTGTGGTGCCTGAGGTTAG 60.036 60.000 0.00 0.00 0.00 2.34
258 259 0.472925 TCCTGTGGTGCCTGAGGTTA 60.473 55.000 0.00 0.00 0.00 2.85
259 260 1.770110 TCCTGTGGTGCCTGAGGTT 60.770 57.895 0.00 0.00 0.00 3.50
260 261 2.122413 TCCTGTGGTGCCTGAGGT 60.122 61.111 0.00 0.00 0.00 3.85
261 262 2.348998 GTCCTGTGGTGCCTGAGG 59.651 66.667 0.00 0.00 0.00 3.86
262 263 2.047844 CGTCCTGTGGTGCCTGAG 60.048 66.667 0.00 0.00 0.00 3.35
263 264 2.842462 ACGTCCTGTGGTGCCTGA 60.842 61.111 0.00 0.00 0.00 3.86
264 265 2.357517 GACGTCCTGTGGTGCCTG 60.358 66.667 3.51 0.00 0.00 4.85
265 266 3.991051 CGACGTCCTGTGGTGCCT 61.991 66.667 10.58 0.00 0.00 4.75
296 297 1.447643 GTGACCATGGATCTCCCGG 59.552 63.158 21.47 0.00 37.93 5.73
297 298 1.447643 GGTGACCATGGATCTCCCG 59.552 63.158 21.47 0.00 37.93 5.14
336 340 1.154413 CACCGCAGATGACGCAAAC 60.154 57.895 0.00 0.00 0.00 2.93
338 342 2.027073 GTCACCGCAGATGACGCAA 61.027 57.895 0.00 0.00 0.00 4.85
364 368 2.561549 TTTACATCGACCGGACGCCC 62.562 60.000 21.57 0.00 0.00 6.13
371 382 1.274596 CCTCCGTTTTACATCGACCG 58.725 55.000 0.00 0.00 0.00 4.79
377 388 2.104253 CGCCGCCTCCGTTTTACAT 61.104 57.895 0.00 0.00 0.00 2.29
378 389 2.739287 CGCCGCCTCCGTTTTACA 60.739 61.111 0.00 0.00 0.00 2.41
399 410 1.294659 GCAAGGAACTGTGCTCCGAG 61.295 60.000 0.00 0.00 40.86 4.63
424 435 1.134936 TCTCTCTCTCTCTCCGTGTCG 60.135 57.143 0.00 0.00 0.00 4.35
426 437 2.168521 CTCTCTCTCTCTCTCTCCGTGT 59.831 54.545 0.00 0.00 0.00 4.49
430 441 2.565841 GTGCTCTCTCTCTCTCTCTCC 58.434 57.143 0.00 0.00 0.00 3.71
436 447 1.309688 GGGGGTGCTCTCTCTCTCT 59.690 63.158 0.00 0.00 0.00 3.10
437 448 0.616111 TTGGGGGTGCTCTCTCTCTC 60.616 60.000 0.00 0.00 0.00 3.20
438 449 0.178891 TTTGGGGGTGCTCTCTCTCT 60.179 55.000 0.00 0.00 0.00 3.10
440 451 0.915364 GATTTGGGGGTGCTCTCTCT 59.085 55.000 0.00 0.00 0.00 3.10
441 452 0.106967 GGATTTGGGGGTGCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
442 453 1.915078 CGGATTTGGGGGTGCTCTCT 61.915 60.000 0.00 0.00 0.00 3.10
444 455 1.915078 CTCGGATTTGGGGGTGCTCT 61.915 60.000 0.00 0.00 0.00 4.09
445 456 1.452108 CTCGGATTTGGGGGTGCTC 60.452 63.158 0.00 0.00 0.00 4.26
446 457 2.677228 CTCGGATTTGGGGGTGCT 59.323 61.111 0.00 0.00 0.00 4.40
447 458 3.140814 GCTCGGATTTGGGGGTGC 61.141 66.667 0.00 0.00 0.00 5.01
449 460 1.304134 GTTGCTCGGATTTGGGGGT 60.304 57.895 0.00 0.00 0.00 4.95
450 461 1.304052 TGTTGCTCGGATTTGGGGG 60.304 57.895 0.00 0.00 0.00 5.40
452 463 1.533625 TTCTGTTGCTCGGATTTGGG 58.466 50.000 0.00 0.00 0.00 4.12
455 466 3.071874 TGGATTCTGTTGCTCGGATTT 57.928 42.857 0.00 0.00 0.00 2.17
456 467 2.787473 TGGATTCTGTTGCTCGGATT 57.213 45.000 0.00 0.00 0.00 3.01
458 469 2.358957 CATTGGATTCTGTTGCTCGGA 58.641 47.619 0.00 0.00 0.00 4.55
460 471 1.202222 GCCATTGGATTCTGTTGCTCG 60.202 52.381 6.95 0.00 0.00 5.03
461 472 1.135721 GGCCATTGGATTCTGTTGCTC 59.864 52.381 6.95 0.00 0.00 4.26
462 473 1.188863 GGCCATTGGATTCTGTTGCT 58.811 50.000 6.95 0.00 0.00 3.91
463 474 0.179129 CGGCCATTGGATTCTGTTGC 60.179 55.000 6.95 0.00 0.00 4.17
464 475 1.402968 CTCGGCCATTGGATTCTGTTG 59.597 52.381 6.95 0.00 0.00 3.33
486 506 1.482278 GCTGACGTGAGAATCGATCC 58.518 55.000 6.09 0.00 38.61 3.36
530 552 2.680370 GGATGGGTTCTTCCGGGCT 61.680 63.158 0.00 0.00 37.00 5.19
535 557 1.202698 CGGATCTGGATGGGTTCTTCC 60.203 57.143 0.00 0.00 37.63 3.46
536 558 1.811941 GCGGATCTGGATGGGTTCTTC 60.812 57.143 3.14 0.00 0.00 2.87
537 559 0.181350 GCGGATCTGGATGGGTTCTT 59.819 55.000 3.14 0.00 0.00 2.52
571 593 3.716195 CCAGATGGTCGGGTGGCA 61.716 66.667 0.00 0.00 0.00 4.92
575 597 1.690633 AGATGCCAGATGGTCGGGT 60.691 57.895 0.00 0.00 34.05 5.28
578 600 1.890979 GCCAGATGCCAGATGGTCG 60.891 63.158 0.00 0.00 36.43 4.79
579 601 1.890979 CGCCAGATGCCAGATGGTC 60.891 63.158 0.00 0.00 36.43 4.02
580 602 2.191375 CGCCAGATGCCAGATGGT 59.809 61.111 0.00 0.00 36.43 3.55
582 604 3.285215 GCCGCCAGATGCCAGATG 61.285 66.667 0.00 0.00 36.24 2.90
604 626 1.248785 TGGGGAAGAGGAAGACGACG 61.249 60.000 0.00 0.00 0.00 5.12
606 628 0.903454 GGTGGGGAAGAGGAAGACGA 60.903 60.000 0.00 0.00 0.00 4.20
607 629 0.905337 AGGTGGGGAAGAGGAAGACG 60.905 60.000 0.00 0.00 0.00 4.18
608 630 0.906066 GAGGTGGGGAAGAGGAAGAC 59.094 60.000 0.00 0.00 0.00 3.01
609 631 0.491823 TGAGGTGGGGAAGAGGAAGA 59.508 55.000 0.00 0.00 0.00 2.87
610 632 0.615850 GTGAGGTGGGGAAGAGGAAG 59.384 60.000 0.00 0.00 0.00 3.46
611 633 0.193574 AGTGAGGTGGGGAAGAGGAA 59.806 55.000 0.00 0.00 0.00 3.36
614 636 1.190643 GAGAGTGAGGTGGGGAAGAG 58.809 60.000 0.00 0.00 0.00 2.85
643 669 0.747255 GTGATAGCAGGAAGAGGCGA 59.253 55.000 0.00 0.00 34.54 5.54
644 670 0.749649 AGTGATAGCAGGAAGAGGCG 59.250 55.000 0.00 0.00 34.54 5.52
645 671 1.809651 GCAGTGATAGCAGGAAGAGGC 60.810 57.143 0.00 0.00 0.00 4.70
646 672 1.761784 AGCAGTGATAGCAGGAAGAGG 59.238 52.381 0.00 0.00 0.00 3.69
647 673 3.549827 CGTAGCAGTGATAGCAGGAAGAG 60.550 52.174 0.00 0.00 0.00 2.85
648 674 2.359214 CGTAGCAGTGATAGCAGGAAGA 59.641 50.000 0.00 0.00 0.00 2.87
651 677 1.950216 CTCGTAGCAGTGATAGCAGGA 59.050 52.381 0.00 0.00 0.00 3.86
653 679 3.367607 GAACTCGTAGCAGTGATAGCAG 58.632 50.000 0.00 0.00 0.00 4.24
654 680 2.099263 GGAACTCGTAGCAGTGATAGCA 59.901 50.000 0.00 0.00 0.00 3.49
656 682 2.612672 TCGGAACTCGTAGCAGTGATAG 59.387 50.000 0.00 0.00 40.32 2.08
657 683 2.353889 GTCGGAACTCGTAGCAGTGATA 59.646 50.000 0.00 0.00 40.32 2.15
658 684 1.132643 GTCGGAACTCGTAGCAGTGAT 59.867 52.381 0.00 0.00 40.32 3.06
659 685 0.520404 GTCGGAACTCGTAGCAGTGA 59.480 55.000 0.00 0.00 40.32 3.41
662 688 1.139095 GGGTCGGAACTCGTAGCAG 59.861 63.158 0.00 0.00 40.32 4.24
663 689 2.345760 GGGGTCGGAACTCGTAGCA 61.346 63.158 0.00 0.00 40.32 3.49
664 690 2.493501 GGGGTCGGAACTCGTAGC 59.506 66.667 0.00 0.00 40.32 3.58
665 691 1.746615 TCGGGGTCGGAACTCGTAG 60.747 63.158 15.89 0.00 40.32 3.51
666 692 2.040544 GTCGGGGTCGGAACTCGTA 61.041 63.158 15.89 0.00 40.32 3.43
667 693 3.368571 GTCGGGGTCGGAACTCGT 61.369 66.667 15.89 0.00 40.32 4.18
668 694 3.338126 CTGTCGGGGTCGGAACTCG 62.338 68.421 9.52 9.52 40.90 4.18
669 695 2.572284 CTGTCGGGGTCGGAACTC 59.428 66.667 0.00 0.00 36.95 3.01
670 696 2.995574 CCTGTCGGGGTCGGAACT 60.996 66.667 0.00 0.00 36.95 3.01
703 729 3.118223 GGTGGGGTGGTTTTGAATGAAAA 60.118 43.478 0.00 0.00 0.00 2.29
708 734 0.472925 GGGGTGGGGTGGTTTTGAAT 60.473 55.000 0.00 0.00 0.00 2.57
834 868 1.005630 GAGATGGGGATTCGAGGCG 60.006 63.158 0.00 0.00 0.00 5.52
835 869 1.005630 CGAGATGGGGATTCGAGGC 60.006 63.158 0.00 0.00 36.49 4.70
836 870 0.827925 TCCGAGATGGGGATTCGAGG 60.828 60.000 0.00 0.00 38.76 4.63
837 871 0.600557 CTCCGAGATGGGGATTCGAG 59.399 60.000 0.00 0.00 43.10 4.04
838 872 0.106167 ACTCCGAGATGGGGATTCGA 60.106 55.000 1.33 0.00 43.10 3.71
840 874 0.315568 CGACTCCGAGATGGGGATTC 59.684 60.000 1.33 0.00 43.10 2.52
841 875 0.106167 TCGACTCCGAGATGGGGATT 60.106 55.000 1.33 0.00 43.10 3.01
857 895 2.662866 AGGTCGAGTGGGATTATTCGA 58.337 47.619 0.00 0.00 39.48 3.71
861 899 5.221864 GGGATTTAAGGTCGAGTGGGATTAT 60.222 44.000 0.00 0.00 0.00 1.28
862 900 4.102054 GGGATTTAAGGTCGAGTGGGATTA 59.898 45.833 0.00 0.00 0.00 1.75
863 901 3.118000 GGGATTTAAGGTCGAGTGGGATT 60.118 47.826 0.00 0.00 0.00 3.01
865 903 1.835531 GGGATTTAAGGTCGAGTGGGA 59.164 52.381 0.00 0.00 0.00 4.37
867 905 4.957684 ATAGGGATTTAAGGTCGAGTGG 57.042 45.455 0.00 0.00 0.00 4.00
868 906 6.294620 GGAGTATAGGGATTTAAGGTCGAGTG 60.295 46.154 0.00 0.00 0.00 3.51
869 907 5.774184 GGAGTATAGGGATTTAAGGTCGAGT 59.226 44.000 0.00 0.00 0.00 4.18
871 909 4.763793 CGGAGTATAGGGATTTAAGGTCGA 59.236 45.833 0.00 0.00 0.00 4.20
1125 1178 3.692406 GCCGAGTCCCTGAACCGT 61.692 66.667 0.00 0.00 0.00 4.83
1304 1360 1.076923 TACAGCTCCTCCTCCGTCC 60.077 63.158 0.00 0.00 0.00 4.79
1374 1430 2.254651 ACGGAAGTGACGACGCTC 59.745 61.111 0.58 0.00 46.97 5.03
1563 1619 0.109132 CGCCAAGCACAAAATCCTCC 60.109 55.000 0.00 0.00 0.00 4.30
1632 1688 2.359850 TGCAGCGGGTTGATCACC 60.360 61.111 0.00 0.00 46.46 4.02
1751 1811 2.083774 TGCAACGCTTATCCAGGAAAG 58.916 47.619 0.00 0.07 0.00 2.62
1852 1915 9.559732 CCATAGTCCTACATACAAATGAATTCA 57.440 33.333 11.26 11.26 36.54 2.57
2113 2176 2.250924 TGAGATTGACACTCCTGCTCA 58.749 47.619 0.00 0.00 33.95 4.26
2164 2227 9.672086 CTAGTACAAGATTACAATCTCAGCTAC 57.328 37.037 4.98 3.64 44.67 3.58
2173 2236 6.127054 TGAGGCAGCTAGTACAAGATTACAAT 60.127 38.462 0.00 0.00 0.00 2.71
2273 2336 5.390613 GTTACCACAACTATCACAACATGC 58.609 41.667 0.00 0.00 0.00 4.06
2274 2337 5.390461 CGGTTACCACAACTATCACAACATG 60.390 44.000 1.13 0.00 0.00 3.21
2275 2338 4.693566 CGGTTACCACAACTATCACAACAT 59.306 41.667 1.13 0.00 0.00 2.71
2296 2359 0.905357 AAGTCTTGGATGGGAGACGG 59.095 55.000 0.00 0.00 45.33 4.79
2302 2365 5.789643 TTTTCTTTGAAGTCTTGGATGGG 57.210 39.130 0.00 0.00 0.00 4.00
2313 2376 6.532657 TGCTTCTTGCTTCTTTTTCTTTGAAG 59.467 34.615 0.00 0.00 43.37 3.02
2391 2458 1.346395 ACATACGAAGCACCTTGGTCA 59.654 47.619 0.00 0.00 34.49 4.02
2392 2459 2.094762 ACATACGAAGCACCTTGGTC 57.905 50.000 0.00 0.00 34.49 4.02
2415 2483 9.784680 TCACTAGATAGAAACGAATGAGTTAAC 57.215 33.333 0.00 0.00 33.41 2.01
2488 2559 4.963276 TTTCTTGCATATGCCACAGTAC 57.037 40.909 24.54 0.00 41.18 2.73
2625 2696 0.796312 CGTCACAACATACCTGCCAC 59.204 55.000 0.00 0.00 0.00 5.01
2885 3014 3.209410 CTCTGAACTGTTGGAAGTGCTT 58.791 45.455 0.00 0.00 0.00 3.91
3328 3467 7.240674 CGTAACATATGTTTGTGCACTTGTAT 58.759 34.615 25.31 10.00 39.31 2.29
3476 3615 2.936919 TCGGATGAATTCCCATCAGG 57.063 50.000 2.27 0.00 43.49 3.86
3477 3616 3.748083 ACATCGGATGAATTCCCATCAG 58.252 45.455 23.98 2.23 43.49 2.90
3511 3650 6.347321 GCAACTGTGTAATGGTTTTTATTGCC 60.347 38.462 0.00 0.00 33.23 4.52
4209 4354 6.030082 ACTCTTCTTTCTTAATACCTGGGGA 58.970 40.000 0.00 0.00 0.00 4.81
4309 4455 7.315142 TGCAGATATTGGAAAAATCAACTGTC 58.685 34.615 0.00 0.00 0.00 3.51
4312 4458 6.071221 TGCTGCAGATATTGGAAAAATCAACT 60.071 34.615 20.43 0.00 0.00 3.16
4803 4952 0.611618 ATGCGGAAACAATGAGGCCA 60.612 50.000 5.01 0.00 0.00 5.36
4845 4994 6.829811 TGATGAATCATGAAACTATGGAGCAA 59.170 34.615 0.00 0.00 0.00 3.91
4973 5648 2.183478 TACCACTGTGCACCAATCAG 57.817 50.000 15.69 7.08 35.60 2.90
5026 5701 5.727791 GCATGAGTGATCCGTAAACAACATC 60.728 44.000 0.00 0.00 0.00 3.06
5508 6186 9.374711 AGTGGAGGTTAAATTAAAGAAAATGGA 57.625 29.630 0.00 0.00 0.00 3.41
5509 6187 9.639601 GAGTGGAGGTTAAATTAAAGAAAATGG 57.360 33.333 0.00 0.00 0.00 3.16
5512 6190 9.862149 AGAGAGTGGAGGTTAAATTAAAGAAAA 57.138 29.630 0.00 0.00 0.00 2.29
5513 6191 9.862149 AAGAGAGTGGAGGTTAAATTAAAGAAA 57.138 29.630 0.00 0.00 0.00 2.52
5514 6192 9.503399 GAAGAGAGTGGAGGTTAAATTAAAGAA 57.497 33.333 0.00 0.00 0.00 2.52
5515 6193 8.881262 AGAAGAGAGTGGAGGTTAAATTAAAGA 58.119 33.333 0.00 0.00 0.00 2.52
5516 6194 9.508642 AAGAAGAGAGTGGAGGTTAAATTAAAG 57.491 33.333 0.00 0.00 0.00 1.85
5517 6195 9.862149 AAAGAAGAGAGTGGAGGTTAAATTAAA 57.138 29.630 0.00 0.00 0.00 1.52
5518 6196 9.862149 AAAAGAAGAGAGTGGAGGTTAAATTAA 57.138 29.630 0.00 0.00 0.00 1.40
5519 6197 9.503399 GAAAAGAAGAGAGTGGAGGTTAAATTA 57.497 33.333 0.00 0.00 0.00 1.40
5520 6198 8.221251 AGAAAAGAAGAGAGTGGAGGTTAAATT 58.779 33.333 0.00 0.00 0.00 1.82
5521 6199 7.750655 AGAAAAGAAGAGAGTGGAGGTTAAAT 58.249 34.615 0.00 0.00 0.00 1.40
5522 6200 7.138054 AGAAAAGAAGAGAGTGGAGGTTAAA 57.862 36.000 0.00 0.00 0.00 1.52
5523 6201 6.749036 AGAAAAGAAGAGAGTGGAGGTTAA 57.251 37.500 0.00 0.00 0.00 2.01
5524 6202 6.749036 AAGAAAAGAAGAGAGTGGAGGTTA 57.251 37.500 0.00 0.00 0.00 2.85
5525 6203 5.638530 AAGAAAAGAAGAGAGTGGAGGTT 57.361 39.130 0.00 0.00 0.00 3.50
5526 6204 6.943899 ATAAGAAAAGAAGAGAGTGGAGGT 57.056 37.500 0.00 0.00 0.00 3.85
5527 6205 8.700051 TCATATAAGAAAAGAAGAGAGTGGAGG 58.300 37.037 0.00 0.00 0.00 4.30
5666 6386 6.347859 TGAAAGTTGGTGGTAAAAACTTGT 57.652 33.333 1.15 0.00 41.93 3.16
5688 6408 3.799963 TGCCACGACGTAGCTTAAATATG 59.200 43.478 18.81 0.00 0.00 1.78
5757 6478 3.569277 TGCTTTGAAGACAGCATGCTTTA 59.431 39.130 19.98 0.00 42.53 1.85
5801 6545 1.654137 CCGTCAAATAATGCGCCGC 60.654 57.895 4.18 0.00 0.00 6.53
5803 6547 2.182014 GTTTCCGTCAAATAATGCGCC 58.818 47.619 4.18 0.00 0.00 6.53
5819 6563 4.026062 GGAACAAACGCCAGAAAATGTTTC 60.026 41.667 0.00 0.00 32.58 2.78
5878 6623 4.042187 ACTGCAAGAGTACAGGAAAAGGAT 59.958 41.667 0.00 0.00 38.25 3.24
5915 6660 8.477419 TTTTTGTCATCTTCCTACCATTTCTT 57.523 30.769 0.00 0.00 0.00 2.52
5936 6681 3.074412 CGCACAGTAGGAGACCATTTTT 58.926 45.455 0.00 0.00 0.00 1.94
6236 6983 6.259550 AGTGGACAAGAAAGAATAACATGC 57.740 37.500 0.00 0.00 0.00 4.06
6374 7121 2.066340 ACCTCCTGGTGATTTGCGA 58.934 52.632 0.00 0.00 46.51 5.10
6508 7257 6.595326 ACAATACAATGATATGCGTATGAGGG 59.405 38.462 2.36 0.00 0.00 4.30
6509 7258 7.331687 TGACAATACAATGATATGCGTATGAGG 59.668 37.037 2.36 0.00 0.00 3.86
6511 7260 7.655328 TGTGACAATACAATGATATGCGTATGA 59.345 33.333 2.36 0.00 0.00 2.15
6517 7266 6.285790 TCGTGTGACAATACAATGATATGC 57.714 37.500 0.00 0.00 31.36 3.14
6522 7271 9.810545 TTCTTATATCGTGTGACAATACAATGA 57.189 29.630 0.00 0.00 31.36 2.57
6526 7275 9.863845 TCTTTTCTTATATCGTGTGACAATACA 57.136 29.630 0.00 0.00 0.00 2.29
6528 7277 9.863845 TGTCTTTTCTTATATCGTGTGACAATA 57.136 29.630 0.00 0.00 0.00 1.90
6529 7278 8.771920 TGTCTTTTCTTATATCGTGTGACAAT 57.228 30.769 0.00 0.00 0.00 2.71
6530 7279 7.870954 ACTGTCTTTTCTTATATCGTGTGACAA 59.129 33.333 0.00 0.00 31.70 3.18
6531 7280 7.328493 CACTGTCTTTTCTTATATCGTGTGACA 59.672 37.037 0.00 0.00 0.00 3.58
6532 7281 7.667283 CACTGTCTTTTCTTATATCGTGTGAC 58.333 38.462 0.00 0.00 0.00 3.67
6533 7282 6.310467 GCACTGTCTTTTCTTATATCGTGTGA 59.690 38.462 0.00 0.00 0.00 3.58
6534 7283 6.455646 GGCACTGTCTTTTCTTATATCGTGTG 60.456 42.308 0.00 0.00 0.00 3.82
6535 7284 5.581085 GGCACTGTCTTTTCTTATATCGTGT 59.419 40.000 0.00 0.00 0.00 4.49
6536 7285 5.276395 CGGCACTGTCTTTTCTTATATCGTG 60.276 44.000 0.00 0.00 0.00 4.35
6537 7286 4.804139 CGGCACTGTCTTTTCTTATATCGT 59.196 41.667 0.00 0.00 0.00 3.73
6538 7287 5.041287 TCGGCACTGTCTTTTCTTATATCG 58.959 41.667 0.00 0.00 0.00 2.92
6539 7288 6.903883 TTCGGCACTGTCTTTTCTTATATC 57.096 37.500 0.00 0.00 0.00 1.63
6540 7289 6.823689 ACATTCGGCACTGTCTTTTCTTATAT 59.176 34.615 0.00 0.00 0.00 0.86
6541 7290 6.092122 CACATTCGGCACTGTCTTTTCTTATA 59.908 38.462 0.00 0.00 0.00 0.98
6542 7291 5.003804 ACATTCGGCACTGTCTTTTCTTAT 58.996 37.500 0.00 0.00 0.00 1.73
6543 7292 4.213270 CACATTCGGCACTGTCTTTTCTTA 59.787 41.667 0.00 0.00 0.00 2.10
6544 7293 3.003689 CACATTCGGCACTGTCTTTTCTT 59.996 43.478 0.00 0.00 0.00 2.52
6545 7294 2.549754 CACATTCGGCACTGTCTTTTCT 59.450 45.455 0.00 0.00 0.00 2.52
6546 7295 2.290641 ACACATTCGGCACTGTCTTTTC 59.709 45.455 0.00 0.00 0.00 2.29
6547 7296 2.297701 ACACATTCGGCACTGTCTTTT 58.702 42.857 0.00 0.00 0.00 2.27
6548 7297 1.967319 ACACATTCGGCACTGTCTTT 58.033 45.000 0.00 0.00 0.00 2.52
6549 7298 2.224185 TGTACACATTCGGCACTGTCTT 60.224 45.455 0.00 0.00 0.00 3.01
6550 7299 1.343142 TGTACACATTCGGCACTGTCT 59.657 47.619 0.00 0.00 0.00 3.41
6551 7300 1.790755 TGTACACATTCGGCACTGTC 58.209 50.000 0.00 0.00 0.00 3.51
6552 7301 2.076100 CATGTACACATTCGGCACTGT 58.924 47.619 0.00 0.00 33.61 3.55
6553 7302 1.202065 GCATGTACACATTCGGCACTG 60.202 52.381 0.00 0.00 33.61 3.66
6554 7303 1.086696 GCATGTACACATTCGGCACT 58.913 50.000 0.00 0.00 33.61 4.40
6555 7304 0.801872 TGCATGTACACATTCGGCAC 59.198 50.000 0.00 0.00 33.61 5.01
6556 7305 1.748950 ATGCATGTACACATTCGGCA 58.251 45.000 0.00 7.91 37.25 5.69
6557 7306 3.961477 TTATGCATGTACACATTCGGC 57.039 42.857 10.16 0.00 33.61 5.54
6558 7307 6.203530 AGAGATTTATGCATGTACACATTCGG 59.796 38.462 10.16 0.00 33.61 4.30
6559 7308 7.182361 AGAGATTTATGCATGTACACATTCG 57.818 36.000 10.16 0.00 33.61 3.34
6561 7310 9.836864 TCTTAGAGATTTATGCATGTACACATT 57.163 29.630 10.16 0.00 33.61 2.71
6562 7311 9.486497 CTCTTAGAGATTTATGCATGTACACAT 57.514 33.333 10.16 0.38 36.96 3.21
6563 7312 8.695456 TCTCTTAGAGATTTATGCATGTACACA 58.305 33.333 10.16 0.00 33.35 3.72
6564 7313 9.703892 ATCTCTTAGAGATTTATGCATGTACAC 57.296 33.333 18.14 0.00 45.86 2.90
6600 7349 9.847224 GGTCCAAAAGATTAGTAGGAATGAATA 57.153 33.333 0.00 0.00 0.00 1.75
6601 7350 8.560903 AGGTCCAAAAGATTAGTAGGAATGAAT 58.439 33.333 0.00 0.00 0.00 2.57
6602 7351 7.928873 AGGTCCAAAAGATTAGTAGGAATGAA 58.071 34.615 0.00 0.00 0.00 2.57
6603 7352 7.510675 AGGTCCAAAAGATTAGTAGGAATGA 57.489 36.000 0.00 0.00 0.00 2.57
6604 7353 9.110502 GTAAGGTCCAAAAGATTAGTAGGAATG 57.889 37.037 0.00 0.00 0.00 2.67
6605 7354 8.272889 GGTAAGGTCCAAAAGATTAGTAGGAAT 58.727 37.037 0.00 0.00 0.00 3.01
6606 7355 7.460082 AGGTAAGGTCCAAAAGATTAGTAGGAA 59.540 37.037 0.00 0.00 0.00 3.36
6607 7356 6.964086 AGGTAAGGTCCAAAAGATTAGTAGGA 59.036 38.462 0.00 0.00 0.00 2.94
6608 7357 7.196637 AGGTAAGGTCCAAAAGATTAGTAGG 57.803 40.000 0.00 0.00 0.00 3.18
6609 7358 8.101419 ACAAGGTAAGGTCCAAAAGATTAGTAG 58.899 37.037 0.00 0.00 0.00 2.57
6610 7359 7.881232 CACAAGGTAAGGTCCAAAAGATTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
6611 7360 6.715264 CACAAGGTAAGGTCCAAAAGATTAGT 59.285 38.462 0.00 0.00 0.00 2.24
6612 7361 6.940298 TCACAAGGTAAGGTCCAAAAGATTAG 59.060 38.462 0.00 0.00 0.00 1.73
6613 7362 6.713450 GTCACAAGGTAAGGTCCAAAAGATTA 59.287 38.462 0.00 0.00 0.00 1.75
6614 7363 5.535030 GTCACAAGGTAAGGTCCAAAAGATT 59.465 40.000 0.00 0.00 0.00 2.40
6615 7364 5.070685 GTCACAAGGTAAGGTCCAAAAGAT 58.929 41.667 0.00 0.00 0.00 2.40
6616 7365 4.080243 TGTCACAAGGTAAGGTCCAAAAGA 60.080 41.667 0.00 0.00 0.00 2.52
6617 7366 4.204012 TGTCACAAGGTAAGGTCCAAAAG 58.796 43.478 0.00 0.00 0.00 2.27
6618 7367 4.237976 TGTCACAAGGTAAGGTCCAAAA 57.762 40.909 0.00 0.00 0.00 2.44
6619 7368 3.935818 TGTCACAAGGTAAGGTCCAAA 57.064 42.857 0.00 0.00 0.00 3.28
6620 7369 3.935818 TTGTCACAAGGTAAGGTCCAA 57.064 42.857 0.00 0.00 0.00 3.53
6621 7370 4.447138 AATTGTCACAAGGTAAGGTCCA 57.553 40.909 0.00 0.00 0.00 4.02
6622 7371 5.784578 AAAATTGTCACAAGGTAAGGTCC 57.215 39.130 0.00 0.00 0.00 4.46
6623 7372 6.569780 ACAAAAATTGTCACAAGGTAAGGTC 58.430 36.000 0.00 0.00 40.56 3.85
6624 7373 6.538945 ACAAAAATTGTCACAAGGTAAGGT 57.461 33.333 0.00 0.00 40.56 3.50
6625 7374 6.238076 GCAACAAAAATTGTCACAAGGTAAGG 60.238 38.462 0.00 0.00 44.59 2.69
6626 7375 6.534793 AGCAACAAAAATTGTCACAAGGTAAG 59.465 34.615 0.00 0.00 44.59 2.34
6649 7398 8.923683 GGTCCGAATAAGTATAAATGAACTAGC 58.076 37.037 0.00 0.00 0.00 3.42
6665 7414 9.425577 GGAAAAATGTAAAAATGGTCCGAATAA 57.574 29.630 0.00 0.00 0.00 1.40
6666 7415 8.808092 AGGAAAAATGTAAAAATGGTCCGAATA 58.192 29.630 0.00 0.00 0.00 1.75
6667 7416 7.602265 CAGGAAAAATGTAAAAATGGTCCGAAT 59.398 33.333 0.00 0.00 0.00 3.34
6669 7418 6.041069 ACAGGAAAAATGTAAAAATGGTCCGA 59.959 34.615 0.00 0.00 0.00 4.55
6670 7419 6.220201 ACAGGAAAAATGTAAAAATGGTCCG 58.780 36.000 0.00 0.00 0.00 4.79
6682 7446 9.435688 GGCAAAGAAATTATACAGGAAAAATGT 57.564 29.630 0.00 0.00 34.62 2.71
6686 7450 7.790782 AGGGCAAAGAAATTATACAGGAAAA 57.209 32.000 0.00 0.00 0.00 2.29
6687 7451 7.790782 AAGGGCAAAGAAATTATACAGGAAA 57.209 32.000 0.00 0.00 0.00 3.13
6702 7466 0.871163 CGCACACACAAAGGGCAAAG 60.871 55.000 0.00 0.00 0.00 2.77
6709 7473 0.096281 ACGAACACGCACACACAAAG 59.904 50.000 0.00 0.00 0.00 2.77
6710 7474 0.179212 CACGAACACGCACACACAAA 60.179 50.000 0.00 0.00 0.00 2.83
6718 7482 1.014564 TCAACACACACGAACACGCA 61.015 50.000 0.00 0.00 0.00 5.24
6970 7736 3.616219 GACCAGGCAATTACCATGTACA 58.384 45.455 0.00 0.00 0.00 2.90
7043 7809 3.282021 GCTGACAAGGGAATAAGATGCA 58.718 45.455 0.00 0.00 0.00 3.96
7160 7926 9.801873 AACATATGTTTATTGGTTTGCTCATAC 57.198 29.630 15.47 0.00 33.93 2.39
7266 8032 1.544724 TTGCCCCTCCTGAATTTTCG 58.455 50.000 0.00 0.00 0.00 3.46
7297 8063 5.348418 TGAAGAAGAAGAAAATGTCTGCG 57.652 39.130 0.00 0.00 36.93 5.18
7298 8064 6.498304 TGTTGAAGAAGAAGAAAATGTCTGC 58.502 36.000 0.00 0.00 36.40 4.26
7299 8065 7.642978 CACTGTTGAAGAAGAAGAAAATGTCTG 59.357 37.037 0.00 0.00 36.40 3.51
7300 8066 7.680588 GCACTGTTGAAGAAGAAGAAAATGTCT 60.681 37.037 0.00 0.00 38.69 3.41
7301 8067 6.416161 GCACTGTTGAAGAAGAAGAAAATGTC 59.584 38.462 0.00 0.00 0.00 3.06
7302 8068 6.096001 AGCACTGTTGAAGAAGAAGAAAATGT 59.904 34.615 0.00 0.00 0.00 2.71
7303 8069 6.501781 AGCACTGTTGAAGAAGAAGAAAATG 58.498 36.000 0.00 0.00 0.00 2.32
7304 8070 6.319658 TGAGCACTGTTGAAGAAGAAGAAAAT 59.680 34.615 0.00 0.00 0.00 1.82
7305 8071 5.647658 TGAGCACTGTTGAAGAAGAAGAAAA 59.352 36.000 0.00 0.00 0.00 2.29
7306 8072 5.185454 TGAGCACTGTTGAAGAAGAAGAAA 58.815 37.500 0.00 0.00 0.00 2.52
7307 8073 4.769688 TGAGCACTGTTGAAGAAGAAGAA 58.230 39.130 0.00 0.00 0.00 2.52
7308 8074 4.406648 TGAGCACTGTTGAAGAAGAAGA 57.593 40.909 0.00 0.00 0.00 2.87
7309 8075 5.931146 ACTATGAGCACTGTTGAAGAAGAAG 59.069 40.000 0.00 0.00 0.00 2.85
7310 8076 5.858381 ACTATGAGCACTGTTGAAGAAGAA 58.142 37.500 0.00 0.00 0.00 2.52
7311 8077 5.474578 ACTATGAGCACTGTTGAAGAAGA 57.525 39.130 0.00 0.00 0.00 2.87
7312 8078 6.870965 AGTTACTATGAGCACTGTTGAAGAAG 59.129 38.462 0.00 0.00 0.00 2.85
7313 8079 6.759272 AGTTACTATGAGCACTGTTGAAGAA 58.241 36.000 0.00 0.00 0.00 2.52
7314 8080 6.346477 AGTTACTATGAGCACTGTTGAAGA 57.654 37.500 0.00 0.00 0.00 2.87
7315 8081 7.090808 TGTAGTTACTATGAGCACTGTTGAAG 58.909 38.462 0.00 0.00 0.00 3.02
7316 8082 6.988522 TGTAGTTACTATGAGCACTGTTGAA 58.011 36.000 0.00 0.00 0.00 2.69
7317 8083 6.584185 TGTAGTTACTATGAGCACTGTTGA 57.416 37.500 0.00 0.00 0.00 3.18
7318 8084 7.834068 AATGTAGTTACTATGAGCACTGTTG 57.166 36.000 0.00 0.00 0.00 3.33
7319 8085 9.751542 GATAATGTAGTTACTATGAGCACTGTT 57.248 33.333 0.00 0.00 0.00 3.16
7320 8086 8.914011 TGATAATGTAGTTACTATGAGCACTGT 58.086 33.333 0.00 0.00 0.00 3.55
7321 8087 9.750125 TTGATAATGTAGTTACTATGAGCACTG 57.250 33.333 0.00 0.00 0.00 3.66
7322 8088 9.973450 CTTGATAATGTAGTTACTATGAGCACT 57.027 33.333 0.00 0.00 0.00 4.40
7323 8089 8.704234 GCTTGATAATGTAGTTACTATGAGCAC 58.296 37.037 0.00 0.00 0.00 4.40
7371 8166 7.367285 TGTTAAATTATGCTTTGTGACCAGAC 58.633 34.615 0.00 0.00 0.00 3.51
7446 8241 6.528072 GCAACCAAAAGTTATCTGCTGTAATC 59.472 38.462 0.00 0.00 36.18 1.75
7447 8242 6.209391 AGCAACCAAAAGTTATCTGCTGTAAT 59.791 34.615 0.00 0.00 37.43 1.89
7448 8243 5.534654 AGCAACCAAAAGTTATCTGCTGTAA 59.465 36.000 0.00 0.00 37.43 2.41
7467 8262 3.507233 TCACCAATTGGAGATCAAGCAAC 59.493 43.478 31.22 0.00 38.95 4.17
7485 8283 4.334203 TCAATGCAACCACGTATATTCACC 59.666 41.667 0.00 0.00 0.00 4.02
7496 8294 5.581126 TGGAGATAATTCAATGCAACCAC 57.419 39.130 0.00 0.00 0.00 4.16
7591 8389 8.527810 TGACGATTCAACATGTATATATGCCTA 58.472 33.333 9.21 0.00 0.00 3.93
7592 8390 7.386059 TGACGATTCAACATGTATATATGCCT 58.614 34.615 9.21 0.00 0.00 4.75
7593 8391 7.595311 TGACGATTCAACATGTATATATGCC 57.405 36.000 9.21 0.00 0.00 4.40
7595 8393 8.243289 TGCTGACGATTCAACATGTATATATG 57.757 34.615 7.84 7.84 0.00 1.78
7596 8394 8.876790 CATGCTGACGATTCAACATGTATATAT 58.123 33.333 0.00 0.00 45.48 0.86
7599 8397 6.529463 CATGCTGACGATTCAACATGTATA 57.471 37.500 0.00 0.00 45.48 1.47
7609 8407 7.023575 ACTAAAAATGTTCATGCTGACGATTC 58.976 34.615 0.00 0.00 0.00 2.52
7615 8413 9.979578 AAAATGTACTAAAAATGTTCATGCTGA 57.020 25.926 0.00 0.00 0.00 4.26
7740 8638 8.421002 ACAAGTTTGGTTAGCTGACAAATTAAT 58.579 29.630 11.15 0.00 36.60 1.40
7916 8814 9.988815 TTAGTAACACCAGTTAAACCGTTATAA 57.011 29.630 0.00 0.00 41.58 0.98
7918 8816 9.154847 GATTAGTAACACCAGTTAAACCGTTAT 57.845 33.333 0.00 0.00 41.58 1.89
7919 8817 8.147058 TGATTAGTAACACCAGTTAAACCGTTA 58.853 33.333 0.00 0.00 41.58 3.18
7937 8835 2.700722 TTGCATGGCGGTGATTAGTA 57.299 45.000 0.00 0.00 0.00 1.82
8312 9215 2.030185 GCAGTACGTCAGTTCTTCTCCA 60.030 50.000 0.00 0.00 0.00 3.86
8341 9244 1.611491 GCGACTGAATAGAGAGAGGGG 59.389 57.143 0.00 0.00 0.00 4.79
8342 9245 1.265635 CGCGACTGAATAGAGAGAGGG 59.734 57.143 0.00 0.00 0.00 4.30
8345 9248 3.007635 TCAACGCGACTGAATAGAGAGA 58.992 45.455 15.93 0.00 0.00 3.10
8374 9310 1.095228 ACTGGTTGCAGGTTGTCGTG 61.095 55.000 0.00 0.00 0.00 4.35
8851 9797 3.058570 TGTCACACGAAATGGTATTGCAC 60.059 43.478 0.00 0.00 0.00 4.57
8852 9798 3.142174 TGTCACACGAAATGGTATTGCA 58.858 40.909 0.00 0.00 0.00 4.08
8853 9799 3.822594 TGTCACACGAAATGGTATTGC 57.177 42.857 0.00 0.00 0.00 3.56
8854 9800 5.351189 TGAGATGTCACACGAAATGGTATTG 59.649 40.000 0.00 0.00 0.00 1.90
8855 9801 5.487433 TGAGATGTCACACGAAATGGTATT 58.513 37.500 0.00 0.00 0.00 1.89
8856 9802 5.084818 TGAGATGTCACACGAAATGGTAT 57.915 39.130 0.00 0.00 0.00 2.73
8857 9803 4.219725 TCTGAGATGTCACACGAAATGGTA 59.780 41.667 0.00 0.00 0.00 3.25
8859 9805 3.588955 TCTGAGATGTCACACGAAATGG 58.411 45.455 0.00 0.00 0.00 3.16
8923 9879 1.061131 GTACATAACGCAGCAGCAGTG 59.939 52.381 0.82 0.00 42.27 3.66
8924 9880 1.359848 GTACATAACGCAGCAGCAGT 58.640 50.000 0.82 0.00 42.27 4.40
8937 9893 9.589111 TGAAAACAGAAATATAGCACGTACATA 57.411 29.630 0.00 0.00 0.00 2.29
8938 9894 8.487313 TGAAAACAGAAATATAGCACGTACAT 57.513 30.769 0.00 0.00 0.00 2.29
8950 9906 9.113838 GCATCCTATCTTCTGAAAACAGAAATA 57.886 33.333 12.54 11.49 40.26 1.40
8951 9907 7.201679 CGCATCCTATCTTCTGAAAACAGAAAT 60.202 37.037 12.54 11.11 40.26 2.17
9083 10039 2.359404 GGAGAGACGGAGGGGTCA 59.641 66.667 0.00 0.00 39.42 4.02
9089 10045 3.522731 CCAGCGGGAGAGACGGAG 61.523 72.222 0.00 0.00 35.59 4.63
9094 10050 2.680352 GTCCACCAGCGGGAGAGA 60.680 66.667 10.86 0.00 38.05 3.10
9108 10064 1.372997 TTCACGCTGCTTCGAGTCC 60.373 57.895 0.00 0.00 0.00 3.85
9240 10230 4.021456 CCTCGCCCACTTTTTAAAATCCTT 60.021 41.667 0.55 0.00 0.00 3.36
9272 10262 4.659480 GTGGGCACGACGAGTAAA 57.341 55.556 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.