Multiple sequence alignment - TraesCS3B01G160400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G160400 chr3B 100.000 2810 0 0 1 2810 155529208 155526399 0.000000e+00 5190
1 TraesCS3B01G160400 chr3B 96.523 1927 60 7 1 1925 167114284 167116205 0.000000e+00 3181
2 TraesCS3B01G160400 chr2B 96.636 1932 57 7 1 1925 799135544 799133614 0.000000e+00 3201
3 TraesCS3B01G160400 chr2B 96.646 1908 59 4 1 1904 673265846 673263940 0.000000e+00 3164
4 TraesCS3B01G160400 chr2B 96.120 1933 67 6 1 1925 673292700 673290768 0.000000e+00 3147
5 TraesCS3B01G160400 chr2B 85.284 299 37 7 2514 2809 63263170 63263464 4.550000e-78 302
6 TraesCS3B01G160400 chr5B 96.584 1932 58 6 1 1925 622577920 622579850 0.000000e+00 3195
7 TraesCS3B01G160400 chr5B 85.517 290 35 7 2515 2801 682421212 682421497 2.120000e-76 296
8 TraesCS3B01G160400 chr5B 84.452 283 43 1 2519 2800 527778705 527778423 7.670000e-71 278
9 TraesCS3B01G160400 chr4B 96.019 1934 69 6 1 1929 113376413 113378343 0.000000e+00 3138
10 TraesCS3B01G160400 chr4B 90.301 299 27 2 2513 2809 467457436 467457138 9.440000e-105 390
11 TraesCS3B01G160400 chr4B 89.003 291 28 3 2523 2809 567437744 567438034 9.570000e-95 357
12 TraesCS3B01G160400 chr3D 95.952 1927 71 6 1 1925 62337602 62335681 0.000000e+00 3120
13 TraesCS3B01G160400 chr3D 95.902 1928 73 5 1 1925 3358703 3356779 0.000000e+00 3118
14 TraesCS3B01G160400 chr3D 95.900 1927 76 3 1 1925 573428914 573430839 0.000000e+00 3118
15 TraesCS3B01G160400 chr3D 83.754 634 61 23 1918 2517 104357248 104356623 1.890000e-156 562
16 TraesCS3B01G160400 chr5D 90.365 301 26 3 2510 2809 347476864 347476566 2.620000e-105 392
17 TraesCS3B01G160400 chr7D 85.816 282 39 1 2518 2798 183025017 183024736 5.880000e-77 298
18 TraesCS3B01G160400 chr7B 84.868 304 37 9 2510 2809 572030665 572030367 5.880000e-77 298
19 TraesCS3B01G160400 chr7A 84.407 295 39 7 2518 2809 189712768 189713058 1.650000e-72 283


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G160400 chr3B 155526399 155529208 2809 True 5190 5190 100.000 1 2810 1 chr3B.!!$R1 2809
1 TraesCS3B01G160400 chr3B 167114284 167116205 1921 False 3181 3181 96.523 1 1925 1 chr3B.!!$F1 1924
2 TraesCS3B01G160400 chr2B 799133614 799135544 1930 True 3201 3201 96.636 1 1925 1 chr2B.!!$R3 1924
3 TraesCS3B01G160400 chr2B 673263940 673265846 1906 True 3164 3164 96.646 1 1904 1 chr2B.!!$R1 1903
4 TraesCS3B01G160400 chr2B 673290768 673292700 1932 True 3147 3147 96.120 1 1925 1 chr2B.!!$R2 1924
5 TraesCS3B01G160400 chr5B 622577920 622579850 1930 False 3195 3195 96.584 1 1925 1 chr5B.!!$F1 1924
6 TraesCS3B01G160400 chr4B 113376413 113378343 1930 False 3138 3138 96.019 1 1929 1 chr4B.!!$F1 1928
7 TraesCS3B01G160400 chr3D 62335681 62337602 1921 True 3120 3120 95.952 1 1925 1 chr3D.!!$R2 1924
8 TraesCS3B01G160400 chr3D 3356779 3358703 1924 True 3118 3118 95.902 1 1925 1 chr3D.!!$R1 1924
9 TraesCS3B01G160400 chr3D 573428914 573430839 1925 False 3118 3118 95.900 1 1925 1 chr3D.!!$F1 1924
10 TraesCS3B01G160400 chr3D 104356623 104357248 625 True 562 562 83.754 1918 2517 1 chr3D.!!$R3 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 325 1.985895 GGTATGGGATTCCGGGATCTT 59.014 52.381 22.31 10.16 35.24 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 1996 1.069258 GGTGGAGGCGTACTATGGC 59.931 63.158 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 6.954684 TGCTATGGGTATTTTTAAGTTCCCAA 59.045 34.615 6.49 0.00 46.17 4.12
254 256 6.765512 GGAGATGAGGAAGATCGAAGAAAAAT 59.234 38.462 0.00 0.00 43.58 1.82
321 325 1.985895 GGTATGGGATTCCGGGATCTT 59.014 52.381 22.31 10.16 35.24 2.40
379 383 2.841266 TGGAGGTTATTGGTTCATCCGA 59.159 45.455 0.00 0.00 39.52 4.55
383 387 5.359860 GGAGGTTATTGGTTCATCCGAATTT 59.640 40.000 0.00 0.00 39.52 1.82
496 500 4.167892 AGGGTATTATGCATGGTCTGGAAA 59.832 41.667 10.16 0.00 0.00 3.13
552 556 9.896645 GGAGATGGATCTAGCATTAATATTTGA 57.103 33.333 0.00 0.00 37.25 2.69
612 616 6.588719 ATTTCAGCTAAAAGGCACAATACA 57.411 33.333 0.00 0.00 34.17 2.29
920 924 8.692682 AAGGCTAATATCCCTCAGAAGATAAT 57.307 34.615 0.00 0.00 0.00 1.28
921 925 8.692682 AGGCTAATATCCCTCAGAAGATAATT 57.307 34.615 0.00 0.00 0.00 1.40
922 926 9.121806 AGGCTAATATCCCTCAGAAGATAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1074 1081 0.815734 GTCCTAAGGCTCGTGCACTA 59.184 55.000 16.19 2.43 41.91 2.74
1202 1209 3.381590 AGAGGGCAAGTTTTGTTTCTGTC 59.618 43.478 0.00 0.00 0.00 3.51
1228 1235 2.742856 CGAGCATGGCACCTGAGAAATA 60.743 50.000 0.00 0.00 0.00 1.40
1399 1407 2.832563 TCGCAACATCACAAGAACAGA 58.167 42.857 0.00 0.00 0.00 3.41
1403 1411 3.503363 GCAACATCACAAGAACAGATGGA 59.497 43.478 0.00 0.00 42.55 3.41
1484 1492 1.836999 ATTAGTGCGGCCAGTGTGGA 61.837 55.000 2.24 0.00 40.96 4.02
1717 1727 3.755378 TGATCTGAAGAAAGAAGCCTTGC 59.245 43.478 0.00 0.00 31.91 4.01
1808 1819 7.114811 ACACGAAATTGCAAGTTTAGCTTTATG 59.885 33.333 14.04 7.40 34.69 1.90
1847 1858 7.339482 GGATTCTTCTTAATAGTGTTCCACCT 58.661 38.462 0.00 0.00 34.49 4.00
1946 1962 5.116069 AGGAACACGCAAATAATCGTTTT 57.884 34.783 0.00 0.00 36.73 2.43
1947 1963 5.525199 AGGAACACGCAAATAATCGTTTTT 58.475 33.333 0.00 0.00 36.73 1.94
1979 1995 9.429109 TTTTTCTAACTTAATCCCCTTTTCACT 57.571 29.630 0.00 0.00 0.00 3.41
1980 1996 7.996098 TTCTAACTTAATCCCCTTTTCACTG 57.004 36.000 0.00 0.00 0.00 3.66
2010 2026 1.342374 GCCTCCACCTTTGATTCCCAT 60.342 52.381 0.00 0.00 0.00 4.00
2018 2034 6.605594 TCCACCTTTGATTCCCATAATTGTAC 59.394 38.462 0.00 0.00 0.00 2.90
2044 2060 7.887996 TTGCTGAATCAAATAATGGTTTGTC 57.112 32.000 0.00 0.00 39.50 3.18
2047 2063 7.384660 TGCTGAATCAAATAATGGTTTGTCAAC 59.615 33.333 0.00 0.00 39.50 3.18
2051 2067 2.911819 ATAATGGTTTGTCAACGCGG 57.088 45.000 12.47 0.00 33.13 6.46
2063 2105 3.807631 AACGCGGCAGACAAGCTCA 62.808 57.895 12.47 0.00 34.17 4.26
2064 2106 3.043713 CGCGGCAGACAAGCTCAA 61.044 61.111 0.00 0.00 34.17 3.02
2074 2116 3.002042 CAGACAAGCTCAAACTGTGTGAG 59.998 47.826 21.20 21.20 44.48 3.51
2075 2117 2.289002 GACAAGCTCAAACTGTGTGAGG 59.711 50.000 25.25 13.72 42.36 3.86
2112 2154 0.614812 GCTTGGTGGCATGGGAAAAT 59.385 50.000 0.00 0.00 0.00 1.82
2113 2155 1.676615 GCTTGGTGGCATGGGAAAATG 60.677 52.381 0.00 0.00 0.00 2.32
2130 2172 0.250467 ATGTGTGCACTCCTGTCCAC 60.250 55.000 19.41 5.62 0.00 4.02
2134 2176 2.348998 GCACTCCTGTCCACCTGG 59.651 66.667 0.00 0.00 0.00 4.45
2135 2177 3.072476 CACTCCTGTCCACCTGGG 58.928 66.667 0.00 0.00 35.41 4.45
2145 2187 1.871418 TCCACCTGGGATCTCTCAAG 58.129 55.000 0.00 0.00 42.15 3.02
2170 2221 1.490574 AGCTCTCAAAGACGCCCTAT 58.509 50.000 0.00 0.00 0.00 2.57
2171 2222 1.137872 AGCTCTCAAAGACGCCCTATG 59.862 52.381 0.00 0.00 0.00 2.23
2191 2242 2.159184 TGCTCAAACTGGCTCTAGATCG 60.159 50.000 0.00 0.00 0.00 3.69
2195 2246 3.699538 TCAAACTGGCTCTAGATCGCTAA 59.300 43.478 4.19 0.00 0.00 3.09
2196 2247 4.047822 CAAACTGGCTCTAGATCGCTAAG 58.952 47.826 4.19 5.23 0.00 2.18
2213 2264 4.142049 CGCTAAGATATCCATCCTTCTCCC 60.142 50.000 0.00 0.00 0.00 4.30
2214 2265 4.780021 GCTAAGATATCCATCCTTCTCCCA 59.220 45.833 0.00 0.00 0.00 4.37
2222 2273 1.700042 ATCCTTCTCCCATGGTCCGC 61.700 60.000 11.73 0.00 0.00 5.54
2229 2280 2.028190 CCATGGTCCGCGCTAGAG 59.972 66.667 5.56 0.00 0.00 2.43
2231 2282 1.299468 CATGGTCCGCGCTAGAGAC 60.299 63.158 5.56 7.01 0.00 3.36
2233 2284 2.829458 GGTCCGCGCTAGAGACCT 60.829 66.667 20.10 0.00 45.49 3.85
2234 2285 2.716864 GTCCGCGCTAGAGACCTC 59.283 66.667 5.56 0.00 0.00 3.85
2238 2289 4.273257 GCGCTAGAGACCTCGGCC 62.273 72.222 0.00 0.00 32.65 6.13
2311 2362 4.042684 AGAATGGTGCTTCCTCTCTCTTTT 59.957 41.667 0.80 0.00 37.07 2.27
2313 2364 2.224621 TGGTGCTTCCTCTCTCTTTTGG 60.225 50.000 0.80 0.00 37.07 3.28
2314 2365 1.809547 GTGCTTCCTCTCTCTTTTGGC 59.190 52.381 0.00 0.00 0.00 4.52
2315 2366 1.421268 TGCTTCCTCTCTCTTTTGGCA 59.579 47.619 0.00 0.00 0.00 4.92
2316 2367 1.809547 GCTTCCTCTCTCTTTTGGCAC 59.190 52.381 0.00 0.00 0.00 5.01
2318 2369 2.847327 TCCTCTCTCTTTTGGCACAG 57.153 50.000 0.00 0.00 42.39 3.66
2319 2370 2.050144 TCCTCTCTCTTTTGGCACAGT 58.950 47.619 0.00 0.00 42.39 3.55
2320 2371 2.149578 CCTCTCTCTTTTGGCACAGTG 58.850 52.381 0.00 0.00 42.39 3.66
2324 2377 4.464008 TCTCTCTTTTGGCACAGTGAATT 58.536 39.130 4.15 0.00 42.39 2.17
2329 2382 3.883830 TTTGGCACAGTGAATTGTTGT 57.116 38.095 4.15 0.00 42.39 3.32
2332 2385 1.860326 GGCACAGTGAATTGTTGTTGC 59.140 47.619 4.15 0.00 0.00 4.17
2342 2395 0.178992 TTGTTGTTGCCTCCCTCCAG 60.179 55.000 0.00 0.00 0.00 3.86
2351 2404 0.984230 CCTCCCTCCAGCAACTTACA 59.016 55.000 0.00 0.00 0.00 2.41
2355 2408 1.073923 CCCTCCAGCAACTTACACCTT 59.926 52.381 0.00 0.00 0.00 3.50
2364 2417 5.914635 CAGCAACTTACACCTTATTTGTGTG 59.085 40.000 6.31 0.00 45.96 3.82
2374 2427 3.820467 CCTTATTTGTGTGCTCTGGTCAA 59.180 43.478 0.00 0.00 0.00 3.18
2377 2430 1.388547 TTGTGTGCTCTGGTCAAACC 58.611 50.000 0.00 0.00 39.22 3.27
2413 2468 0.540454 TGTACGGTGTGGGACAACAA 59.460 50.000 0.00 0.00 44.16 2.83
2443 2498 7.055667 ACAACTCTTGAACTAGTGATCTTCA 57.944 36.000 0.00 0.00 0.00 3.02
2461 2516 2.091541 TCACGGATCCCTTTTGATTGC 58.908 47.619 6.06 0.00 0.00 3.56
2469 2524 3.439154 TCCCTTTTGATTGCTGCCATTA 58.561 40.909 0.00 0.00 0.00 1.90
2487 2542 6.722590 TGCCATTATGCAATTCTTGGATATCT 59.277 34.615 2.05 0.00 42.38 1.98
2488 2543 7.033791 GCCATTATGCAATTCTTGGATATCTG 58.966 38.462 2.05 4.20 42.38 2.90
2490 2545 8.799367 CCATTATGCAATTCTTGGATATCTGAA 58.201 33.333 2.05 5.86 42.38 3.02
2504 2559 7.220030 TGGATATCTGAAGTTTGATCTTAGGC 58.780 38.462 2.05 0.00 0.00 3.93
2506 2561 4.537135 TCTGAAGTTTGATCTTAGGCGT 57.463 40.909 0.00 0.00 0.00 5.68
2556 2611 6.016423 CAAAGCTTGCGTATCATTTCATTG 57.984 37.500 0.00 0.00 0.00 2.82
2557 2612 5.565592 AAGCTTGCGTATCATTTCATTGA 57.434 34.783 0.00 0.00 0.00 2.57
2558 2613 5.762825 AGCTTGCGTATCATTTCATTGAT 57.237 34.783 0.00 0.00 39.60 2.57
2559 2614 6.866010 AGCTTGCGTATCATTTCATTGATA 57.134 33.333 0.00 0.00 37.51 2.15
2560 2615 7.263100 AGCTTGCGTATCATTTCATTGATAA 57.737 32.000 0.00 0.00 39.61 1.75
2561 2616 7.706159 AGCTTGCGTATCATTTCATTGATAAA 58.294 30.769 0.00 0.00 39.61 1.40
2562 2617 8.190122 AGCTTGCGTATCATTTCATTGATAAAA 58.810 29.630 0.00 0.00 39.61 1.52
2563 2618 8.806634 GCTTGCGTATCATTTCATTGATAAAAA 58.193 29.630 0.00 0.00 39.61 1.94
2592 2647 9.880157 GTTAGAATAAATACAAGAGGTGGTACA 57.120 33.333 0.00 0.00 0.00 2.90
2604 2659 2.941891 GTGGTACAACACATGACACG 57.058 50.000 0.00 0.00 44.16 4.49
2605 2660 1.529438 GTGGTACAACACATGACACGG 59.471 52.381 0.00 0.00 44.16 4.94
2606 2661 1.413077 TGGTACAACACATGACACGGA 59.587 47.619 0.00 0.00 31.92 4.69
2607 2662 2.037902 TGGTACAACACATGACACGGAT 59.962 45.455 0.00 0.00 31.92 4.18
2608 2663 2.415168 GGTACAACACATGACACGGATG 59.585 50.000 0.00 0.00 0.00 3.51
2609 2664 0.874390 ACAACACATGACACGGATGC 59.126 50.000 0.00 0.00 0.00 3.91
2610 2665 0.873721 CAACACATGACACGGATGCA 59.126 50.000 0.00 0.00 0.00 3.96
2611 2666 1.266446 CAACACATGACACGGATGCAA 59.734 47.619 0.00 0.00 0.00 4.08
2612 2667 1.159285 ACACATGACACGGATGCAAG 58.841 50.000 0.00 0.00 0.00 4.01
2613 2668 1.270785 ACACATGACACGGATGCAAGA 60.271 47.619 0.00 0.00 0.00 3.02
2614 2669 1.805943 CACATGACACGGATGCAAGAA 59.194 47.619 0.00 0.00 0.00 2.52
2615 2670 2.079158 ACATGACACGGATGCAAGAAG 58.921 47.619 0.00 0.00 0.00 2.85
2616 2671 1.089920 ATGACACGGATGCAAGAAGC 58.910 50.000 0.00 0.00 45.96 3.86
2633 2688 4.758251 CGTGAGCATGGTGCCGGA 62.758 66.667 5.05 0.00 46.52 5.14
2634 2689 2.359850 GTGAGCATGGTGCCGGAA 60.360 61.111 5.05 0.00 46.52 4.30
2635 2690 2.046023 TGAGCATGGTGCCGGAAG 60.046 61.111 5.05 0.00 46.52 3.46
2636 2691 2.045926 GAGCATGGTGCCGGAAGT 60.046 61.111 5.05 0.00 46.52 3.01
2637 2692 1.220749 GAGCATGGTGCCGGAAGTA 59.779 57.895 5.05 0.00 46.52 2.24
2638 2693 0.392461 GAGCATGGTGCCGGAAGTAA 60.392 55.000 5.05 0.00 46.52 2.24
2639 2694 0.037590 AGCATGGTGCCGGAAGTAAA 59.962 50.000 5.05 0.00 46.52 2.01
2640 2695 0.451783 GCATGGTGCCGGAAGTAAAG 59.548 55.000 5.05 0.00 37.42 1.85
2641 2696 1.948611 GCATGGTGCCGGAAGTAAAGA 60.949 52.381 5.05 0.00 37.42 2.52
2642 2697 2.009774 CATGGTGCCGGAAGTAAAGAG 58.990 52.381 5.05 0.00 0.00 2.85
2643 2698 1.344065 TGGTGCCGGAAGTAAAGAGA 58.656 50.000 5.05 0.00 0.00 3.10
2644 2699 1.001633 TGGTGCCGGAAGTAAAGAGAC 59.998 52.381 5.05 0.00 0.00 3.36
2645 2700 1.001633 GGTGCCGGAAGTAAAGAGACA 59.998 52.381 5.05 0.00 0.00 3.41
2646 2701 2.354805 GGTGCCGGAAGTAAAGAGACAT 60.355 50.000 5.05 0.00 0.00 3.06
2647 2702 2.673368 GTGCCGGAAGTAAAGAGACATG 59.327 50.000 5.05 0.00 0.00 3.21
2648 2703 2.565391 TGCCGGAAGTAAAGAGACATGA 59.435 45.455 5.05 0.00 0.00 3.07
2649 2704 3.190874 GCCGGAAGTAAAGAGACATGAG 58.809 50.000 5.05 0.00 0.00 2.90
2650 2705 3.119101 GCCGGAAGTAAAGAGACATGAGA 60.119 47.826 5.05 0.00 0.00 3.27
2651 2706 4.442192 GCCGGAAGTAAAGAGACATGAGAT 60.442 45.833 5.05 0.00 0.00 2.75
2652 2707 5.046529 CCGGAAGTAAAGAGACATGAGATG 58.953 45.833 0.00 0.00 0.00 2.90
2653 2708 4.505922 CGGAAGTAAAGAGACATGAGATGC 59.494 45.833 0.00 0.00 0.00 3.91
2654 2709 5.669477 GGAAGTAAAGAGACATGAGATGCT 58.331 41.667 0.00 0.00 0.00 3.79
2655 2710 5.752955 GGAAGTAAAGAGACATGAGATGCTC 59.247 44.000 0.00 0.00 35.26 4.26
2656 2711 4.930963 AGTAAAGAGACATGAGATGCTCG 58.069 43.478 0.00 0.00 37.99 5.03
2657 2712 4.642437 AGTAAAGAGACATGAGATGCTCGA 59.358 41.667 0.00 0.00 37.99 4.04
2658 2713 3.435105 AAGAGACATGAGATGCTCGAC 57.565 47.619 0.00 0.00 37.99 4.20
2659 2714 1.680735 AGAGACATGAGATGCTCGACC 59.319 52.381 0.00 0.00 37.99 4.79
2660 2715 0.749649 AGACATGAGATGCTCGACCC 59.250 55.000 0.00 0.00 32.35 4.46
2661 2716 0.461548 GACATGAGATGCTCGACCCA 59.538 55.000 0.00 0.00 32.35 4.51
2662 2717 0.904649 ACATGAGATGCTCGACCCAA 59.095 50.000 0.00 0.00 32.35 4.12
2663 2718 1.278985 ACATGAGATGCTCGACCCAAA 59.721 47.619 0.00 0.00 32.35 3.28
2664 2719 2.092753 ACATGAGATGCTCGACCCAAAT 60.093 45.455 0.00 0.00 32.35 2.32
2665 2720 3.134623 ACATGAGATGCTCGACCCAAATA 59.865 43.478 0.00 0.00 32.35 1.40
2666 2721 3.904800 TGAGATGCTCGACCCAAATAA 57.095 42.857 0.00 0.00 32.35 1.40
2667 2722 4.214986 TGAGATGCTCGACCCAAATAAA 57.785 40.909 0.00 0.00 32.35 1.40
2668 2723 4.191544 TGAGATGCTCGACCCAAATAAAG 58.808 43.478 0.00 0.00 32.35 1.85
2669 2724 4.081142 TGAGATGCTCGACCCAAATAAAGA 60.081 41.667 0.00 0.00 32.35 2.52
2670 2725 5.041191 AGATGCTCGACCCAAATAAAGAT 57.959 39.130 0.00 0.00 0.00 2.40
2671 2726 6.174720 AGATGCTCGACCCAAATAAAGATA 57.825 37.500 0.00 0.00 0.00 1.98
2672 2727 6.591935 AGATGCTCGACCCAAATAAAGATAA 58.408 36.000 0.00 0.00 0.00 1.75
2673 2728 6.483640 AGATGCTCGACCCAAATAAAGATAAC 59.516 38.462 0.00 0.00 0.00 1.89
2674 2729 4.879545 TGCTCGACCCAAATAAAGATAACC 59.120 41.667 0.00 0.00 0.00 2.85
2675 2730 4.275196 GCTCGACCCAAATAAAGATAACCC 59.725 45.833 0.00 0.00 0.00 4.11
2676 2731 5.433526 CTCGACCCAAATAAAGATAACCCA 58.566 41.667 0.00 0.00 0.00 4.51
2677 2732 5.817784 TCGACCCAAATAAAGATAACCCAA 58.182 37.500 0.00 0.00 0.00 4.12
2678 2733 6.428295 TCGACCCAAATAAAGATAACCCAAT 58.572 36.000 0.00 0.00 0.00 3.16
2679 2734 6.893005 TCGACCCAAATAAAGATAACCCAATT 59.107 34.615 0.00 0.00 0.00 2.32
2680 2735 8.053963 TCGACCCAAATAAAGATAACCCAATTA 58.946 33.333 0.00 0.00 0.00 1.40
2681 2736 8.688151 CGACCCAAATAAAGATAACCCAATTAA 58.312 33.333 0.00 0.00 0.00 1.40
2687 2742 9.797556 AAATAAAGATAACCCAATTAAACTCGC 57.202 29.630 0.00 0.00 0.00 5.03
2688 2743 5.830000 AAGATAACCCAATTAAACTCGCC 57.170 39.130 0.00 0.00 0.00 5.54
2689 2744 3.875134 AGATAACCCAATTAAACTCGCCG 59.125 43.478 0.00 0.00 0.00 6.46
2690 2745 2.188062 AACCCAATTAAACTCGCCGA 57.812 45.000 0.00 0.00 0.00 5.54
2691 2746 1.445871 ACCCAATTAAACTCGCCGAC 58.554 50.000 0.00 0.00 0.00 4.79
2692 2747 0.730840 CCCAATTAAACTCGCCGACC 59.269 55.000 0.00 0.00 0.00 4.79
2693 2748 1.444836 CCAATTAAACTCGCCGACCA 58.555 50.000 0.00 0.00 0.00 4.02
2694 2749 1.807742 CCAATTAAACTCGCCGACCAA 59.192 47.619 0.00 0.00 0.00 3.67
2695 2750 2.226912 CCAATTAAACTCGCCGACCAAA 59.773 45.455 0.00 0.00 0.00 3.28
2696 2751 3.488489 CAATTAAACTCGCCGACCAAAG 58.512 45.455 0.00 0.00 0.00 2.77
2697 2752 2.529780 TTAAACTCGCCGACCAAAGA 57.470 45.000 0.00 0.00 0.00 2.52
2698 2753 2.529780 TAAACTCGCCGACCAAAGAA 57.470 45.000 0.00 0.00 0.00 2.52
2699 2754 1.226746 AAACTCGCCGACCAAAGAAG 58.773 50.000 0.00 0.00 0.00 2.85
2700 2755 1.228657 AACTCGCCGACCAAAGAAGC 61.229 55.000 0.00 0.00 0.00 3.86
2701 2756 1.667830 CTCGCCGACCAAAGAAGCA 60.668 57.895 0.00 0.00 0.00 3.91
2702 2757 1.227704 TCGCCGACCAAAGAAGCAA 60.228 52.632 0.00 0.00 0.00 3.91
2703 2758 0.605319 TCGCCGACCAAAGAAGCAAT 60.605 50.000 0.00 0.00 0.00 3.56
2704 2759 0.179189 CGCCGACCAAAGAAGCAATC 60.179 55.000 0.00 0.00 0.00 2.67
2705 2760 0.171231 GCCGACCAAAGAAGCAATCC 59.829 55.000 0.00 0.00 0.00 3.01
2706 2761 0.811281 CCGACCAAAGAAGCAATCCC 59.189 55.000 0.00 0.00 0.00 3.85
2707 2762 1.533625 CGACCAAAGAAGCAATCCCA 58.466 50.000 0.00 0.00 0.00 4.37
2708 2763 1.200020 CGACCAAAGAAGCAATCCCAC 59.800 52.381 0.00 0.00 0.00 4.61
2709 2764 1.546029 GACCAAAGAAGCAATCCCACC 59.454 52.381 0.00 0.00 0.00 4.61
2710 2765 0.527565 CCAAAGAAGCAATCCCACCG 59.472 55.000 0.00 0.00 0.00 4.94
2711 2766 1.533625 CAAAGAAGCAATCCCACCGA 58.466 50.000 0.00 0.00 0.00 4.69
2712 2767 1.200020 CAAAGAAGCAATCCCACCGAC 59.800 52.381 0.00 0.00 0.00 4.79
2713 2768 0.400213 AAGAAGCAATCCCACCGACA 59.600 50.000 0.00 0.00 0.00 4.35
2714 2769 0.400213 AGAAGCAATCCCACCGACAA 59.600 50.000 0.00 0.00 0.00 3.18
2715 2770 0.521735 GAAGCAATCCCACCGACAAC 59.478 55.000 0.00 0.00 0.00 3.32
2716 2771 0.110486 AAGCAATCCCACCGACAACT 59.890 50.000 0.00 0.00 0.00 3.16
2717 2772 0.981183 AGCAATCCCACCGACAACTA 59.019 50.000 0.00 0.00 0.00 2.24
2718 2773 1.066143 AGCAATCCCACCGACAACTAG 60.066 52.381 0.00 0.00 0.00 2.57
2719 2774 2.012051 GCAATCCCACCGACAACTAGG 61.012 57.143 0.00 0.00 0.00 3.02
2720 2775 0.252197 AATCCCACCGACAACTAGGC 59.748 55.000 0.00 0.00 0.00 3.93
2721 2776 0.907704 ATCCCACCGACAACTAGGCA 60.908 55.000 0.00 0.00 0.00 4.75
2722 2777 1.122632 TCCCACCGACAACTAGGCAA 61.123 55.000 0.00 0.00 0.00 4.52
2723 2778 0.953960 CCCACCGACAACTAGGCAAC 60.954 60.000 0.00 0.00 0.00 4.17
2724 2779 0.953960 CCACCGACAACTAGGCAACC 60.954 60.000 0.00 0.00 37.17 3.77
2725 2780 0.250124 CACCGACAACTAGGCAACCA 60.250 55.000 0.00 0.00 37.17 3.67
2726 2781 0.470766 ACCGACAACTAGGCAACCAA 59.529 50.000 0.00 0.00 37.17 3.67
2727 2782 0.872388 CCGACAACTAGGCAACCAAC 59.128 55.000 0.00 0.00 37.17 3.77
2728 2783 1.588674 CGACAACTAGGCAACCAACA 58.411 50.000 0.00 0.00 37.17 3.33
2729 2784 2.151202 CGACAACTAGGCAACCAACAT 58.849 47.619 0.00 0.00 37.17 2.71
2730 2785 2.159627 CGACAACTAGGCAACCAACATC 59.840 50.000 0.00 0.00 37.17 3.06
2731 2786 3.412386 GACAACTAGGCAACCAACATCT 58.588 45.455 0.00 0.00 37.17 2.90
2732 2787 3.412386 ACAACTAGGCAACCAACATCTC 58.588 45.455 0.00 0.00 37.17 2.75
2733 2788 2.749621 CAACTAGGCAACCAACATCTCC 59.250 50.000 0.00 0.00 37.17 3.71
2734 2789 1.985159 ACTAGGCAACCAACATCTCCA 59.015 47.619 0.00 0.00 37.17 3.86
2735 2790 2.375174 ACTAGGCAACCAACATCTCCAA 59.625 45.455 0.00 0.00 37.17 3.53
2736 2791 2.380064 AGGCAACCAACATCTCCAAA 57.620 45.000 0.00 0.00 37.17 3.28
2737 2792 2.893424 AGGCAACCAACATCTCCAAAT 58.107 42.857 0.00 0.00 37.17 2.32
2738 2793 2.827921 AGGCAACCAACATCTCCAAATC 59.172 45.455 0.00 0.00 37.17 2.17
2739 2794 2.094026 GGCAACCAACATCTCCAAATCC 60.094 50.000 0.00 0.00 0.00 3.01
2740 2795 2.562298 GCAACCAACATCTCCAAATCCA 59.438 45.455 0.00 0.00 0.00 3.41
2741 2796 3.614870 GCAACCAACATCTCCAAATCCAC 60.615 47.826 0.00 0.00 0.00 4.02
2742 2797 3.524095 ACCAACATCTCCAAATCCACA 57.476 42.857 0.00 0.00 0.00 4.17
2743 2798 3.157087 ACCAACATCTCCAAATCCACAC 58.843 45.455 0.00 0.00 0.00 3.82
2744 2799 2.493278 CCAACATCTCCAAATCCACACC 59.507 50.000 0.00 0.00 0.00 4.16
2745 2800 2.113860 ACATCTCCAAATCCACACCG 57.886 50.000 0.00 0.00 0.00 4.94
2746 2801 1.628340 ACATCTCCAAATCCACACCGA 59.372 47.619 0.00 0.00 0.00 4.69
2747 2802 2.283298 CATCTCCAAATCCACACCGAG 58.717 52.381 0.00 0.00 0.00 4.63
2748 2803 0.613260 TCTCCAAATCCACACCGAGG 59.387 55.000 0.00 0.00 0.00 4.63
2749 2804 0.613260 CTCCAAATCCACACCGAGGA 59.387 55.000 0.00 0.00 39.97 3.71
2750 2805 0.323629 TCCAAATCCACACCGAGGAC 59.676 55.000 0.00 0.00 38.13 3.85
2751 2806 0.036164 CCAAATCCACACCGAGGACA 59.964 55.000 0.00 0.00 38.13 4.02
2752 2807 1.156736 CAAATCCACACCGAGGACAC 58.843 55.000 0.00 0.00 38.13 3.67
2753 2808 0.036306 AAATCCACACCGAGGACACC 59.964 55.000 0.00 0.00 38.13 4.16
2754 2809 2.167398 AATCCACACCGAGGACACCG 62.167 60.000 0.00 0.00 38.13 4.94
2762 2817 2.357034 GAGGACACCGCGAGCAAA 60.357 61.111 8.23 0.00 0.00 3.68
2763 2818 2.665185 AGGACACCGCGAGCAAAC 60.665 61.111 8.23 0.00 0.00 2.93
2764 2819 2.970324 GGACACCGCGAGCAAACA 60.970 61.111 8.23 0.00 0.00 2.83
2765 2820 2.539338 GGACACCGCGAGCAAACAA 61.539 57.895 8.23 0.00 0.00 2.83
2766 2821 1.082756 GACACCGCGAGCAAACAAG 60.083 57.895 8.23 0.00 0.00 3.16
2767 2822 1.495584 GACACCGCGAGCAAACAAGA 61.496 55.000 8.23 0.00 0.00 3.02
2768 2823 1.082756 CACCGCGAGCAAACAAGAC 60.083 57.895 8.23 0.00 0.00 3.01
2769 2824 1.522806 ACCGCGAGCAAACAAGACA 60.523 52.632 8.23 0.00 0.00 3.41
2770 2825 1.092921 ACCGCGAGCAAACAAGACAA 61.093 50.000 8.23 0.00 0.00 3.18
2771 2826 0.657368 CCGCGAGCAAACAAGACAAC 60.657 55.000 8.23 0.00 0.00 3.32
2772 2827 0.027455 CGCGAGCAAACAAGACAACA 59.973 50.000 0.00 0.00 0.00 3.33
2773 2828 1.466855 GCGAGCAAACAAGACAACAC 58.533 50.000 0.00 0.00 0.00 3.32
2774 2829 1.859998 GCGAGCAAACAAGACAACACC 60.860 52.381 0.00 0.00 0.00 4.16
2775 2830 1.670811 CGAGCAAACAAGACAACACCT 59.329 47.619 0.00 0.00 0.00 4.00
2776 2831 2.097466 CGAGCAAACAAGACAACACCTT 59.903 45.455 0.00 0.00 0.00 3.50
2777 2832 3.695816 GAGCAAACAAGACAACACCTTC 58.304 45.455 0.00 0.00 0.00 3.46
2778 2833 3.088532 AGCAAACAAGACAACACCTTCA 58.911 40.909 0.00 0.00 0.00 3.02
2779 2834 3.119495 AGCAAACAAGACAACACCTTCAC 60.119 43.478 0.00 0.00 0.00 3.18
2780 2835 3.425404 CAAACAAGACAACACCTTCACG 58.575 45.455 0.00 0.00 0.00 4.35
2781 2836 2.684001 ACAAGACAACACCTTCACGA 57.316 45.000 0.00 0.00 0.00 4.35
2782 2837 2.980568 ACAAGACAACACCTTCACGAA 58.019 42.857 0.00 0.00 0.00 3.85
2783 2838 2.936498 ACAAGACAACACCTTCACGAAG 59.064 45.455 0.00 0.00 38.14 3.79
2793 2848 2.417339 CTTCACGAAGGAGAACGACA 57.583 50.000 0.00 0.00 34.87 4.35
2794 2849 2.947852 CTTCACGAAGGAGAACGACAT 58.052 47.619 0.00 0.00 34.87 3.06
2795 2850 2.631418 TCACGAAGGAGAACGACATC 57.369 50.000 0.00 0.00 0.00 3.06
2796 2851 1.883926 TCACGAAGGAGAACGACATCA 59.116 47.619 0.00 0.00 0.00 3.07
2797 2852 2.295070 TCACGAAGGAGAACGACATCAA 59.705 45.455 0.00 0.00 0.00 2.57
2798 2853 2.663602 CACGAAGGAGAACGACATCAAG 59.336 50.000 0.00 0.00 0.00 3.02
2799 2854 2.557056 ACGAAGGAGAACGACATCAAGA 59.443 45.455 0.00 0.00 0.00 3.02
2800 2855 3.193691 ACGAAGGAGAACGACATCAAGAT 59.806 43.478 0.00 0.00 0.00 2.40
2801 2856 3.794028 CGAAGGAGAACGACATCAAGATC 59.206 47.826 0.00 0.00 0.00 2.75
2802 2857 4.439426 CGAAGGAGAACGACATCAAGATCT 60.439 45.833 0.00 0.00 0.00 2.75
2803 2858 4.647424 AGGAGAACGACATCAAGATCTC 57.353 45.455 0.00 0.00 34.08 2.75
2804 2859 3.066064 AGGAGAACGACATCAAGATCTCG 59.934 47.826 0.00 6.24 35.74 4.04
2805 2860 3.181495 GGAGAACGACATCAAGATCTCGT 60.181 47.826 7.42 7.42 42.66 4.18
2806 2861 4.022464 AGAACGACATCAAGATCTCGTC 57.978 45.455 12.52 7.60 40.59 4.20
2808 2863 2.460243 CGACATCAAGATCTCGTCGT 57.540 50.000 20.22 7.76 43.26 4.34
2809 2864 2.786854 CGACATCAAGATCTCGTCGTT 58.213 47.619 20.22 0.00 43.26 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 4.165372 TGTTAACTCCTCACAAAGGGAAGT 59.835 41.667 7.22 0.00 46.23 3.01
208 209 7.426667 TCTCCCCACCAAAAATTCCTAATAAT 58.573 34.615 0.00 0.00 0.00 1.28
209 210 6.806217 TCTCCCCACCAAAAATTCCTAATAA 58.194 36.000 0.00 0.00 0.00 1.40
211 212 5.283876 TCTCCCCACCAAAAATTCCTAAT 57.716 39.130 0.00 0.00 0.00 1.73
212 213 4.750833 TCTCCCCACCAAAAATTCCTAA 57.249 40.909 0.00 0.00 0.00 2.69
254 256 4.374689 TTGTCCCAAGCTAACCAATGTA 57.625 40.909 0.00 0.00 0.00 2.29
321 325 7.937394 GCTAAGAGGGCTTGGTTAAATAATCTA 59.063 37.037 0.00 0.00 35.28 1.98
379 383 4.916983 TCAGCTTAGCACACAACAAATT 57.083 36.364 7.07 0.00 0.00 1.82
383 387 3.124578 TCATCAGCTTAGCACACAACA 57.875 42.857 7.07 0.00 0.00 3.33
496 500 5.625197 GCCAAATGACACCATTCTTAAGCAT 60.625 40.000 0.00 0.00 41.84 3.79
612 616 5.511386 AATCAGAGACCCACTTCAATCTT 57.489 39.130 0.00 0.00 0.00 2.40
970 974 5.675538 AGTAATCTGATGGTGCTTAACTCC 58.324 41.667 0.00 0.00 0.00 3.85
1074 1081 1.205893 GATTCTCTCAAGGCCAGTCGT 59.794 52.381 5.01 0.00 0.00 4.34
1228 1235 8.051468 TCCTTCCCTTTCCCAAAAATTAAATT 57.949 30.769 0.00 0.00 0.00 1.82
1263 1271 2.406130 ACCACAAAAATTGCAGATGCG 58.594 42.857 0.00 0.00 45.83 4.73
1441 1449 2.440627 TCTCCACATAGCTGGCATCAAT 59.559 45.455 0.00 0.00 0.00 2.57
1484 1492 3.910627 AGATGAGTTCCTAACAACCACCT 59.089 43.478 0.00 0.00 0.00 4.00
1640 1650 1.886542 GGAAAGAACGGACAAAGGCAT 59.113 47.619 0.00 0.00 0.00 4.40
1717 1727 6.696825 ATTCTTGAGCATCGTCAATATACG 57.303 37.500 0.00 0.00 44.19 3.06
1782 1792 4.568152 AGCTAAACTTGCAATTTCGTGT 57.432 36.364 0.00 0.00 0.00 4.49
1847 1858 5.188327 TCATTACAAAATTCGCCACACAA 57.812 34.783 0.00 0.00 0.00 3.33
1958 1974 5.125578 GGCAGTGAAAAGGGGATTAAGTTAG 59.874 44.000 0.00 0.00 0.00 2.34
1961 1977 3.181423 TGGCAGTGAAAAGGGGATTAAGT 60.181 43.478 0.00 0.00 0.00 2.24
1979 1995 1.682451 GGTGGAGGCGTACTATGGCA 61.682 60.000 4.75 0.00 31.21 4.92
1980 1996 1.069258 GGTGGAGGCGTACTATGGC 59.931 63.158 0.00 0.00 0.00 4.40
2018 2034 8.314143 ACAAACCATTATTTGATTCAGCAAAG 57.686 30.769 5.30 0.00 41.28 2.77
2044 2060 3.300667 GAGCTTGTCTGCCGCGTTG 62.301 63.158 4.92 0.00 0.00 4.10
2047 2063 2.606961 TTTGAGCTTGTCTGCCGCG 61.607 57.895 0.00 0.00 0.00 6.46
2051 2067 1.672881 ACACAGTTTGAGCTTGTCTGC 59.327 47.619 0.00 0.00 0.00 4.26
2112 2154 3.640761 TGGACAGGAGTGCACACA 58.359 55.556 21.04 3.19 41.46 3.72
2130 2172 1.493861 TGAGCTTGAGAGATCCCAGG 58.506 55.000 0.00 0.00 37.51 4.45
2145 2187 1.136113 GCGTCTTTGAGAGCTTTGAGC 60.136 52.381 0.00 0.00 42.84 4.26
2170 2221 2.159184 CGATCTAGAGCCAGTTTGAGCA 60.159 50.000 1.64 0.00 0.00 4.26
2171 2222 2.468831 CGATCTAGAGCCAGTTTGAGC 58.531 52.381 1.64 0.00 0.00 4.26
2191 2242 4.780021 TGGGAGAAGGATGGATATCTTAGC 59.220 45.833 2.05 0.00 33.68 3.09
2195 2246 4.110072 CCATGGGAGAAGGATGGATATCT 58.890 47.826 2.85 0.00 39.29 1.98
2196 2247 3.848975 ACCATGGGAGAAGGATGGATATC 59.151 47.826 18.09 0.00 39.29 1.63
2213 2264 1.299468 GTCTCTAGCGCGGACCATG 60.299 63.158 8.83 0.00 0.00 3.66
2214 2265 2.491022 GGTCTCTAGCGCGGACCAT 61.491 63.158 26.98 5.14 46.14 3.55
2222 2273 2.517402 AGGCCGAGGTCTCTAGCG 60.517 66.667 0.00 0.00 0.00 4.26
2229 2280 1.144936 CTCATTGGAGGCCGAGGTC 59.855 63.158 0.00 0.00 37.51 3.85
2253 2304 2.434702 GGTCGATACCCTGAAGATGGTT 59.565 50.000 0.00 0.00 40.21 3.67
2254 2305 2.040178 GGTCGATACCCTGAAGATGGT 58.960 52.381 0.00 0.00 40.21 3.55
2287 2338 2.500910 AGAGAGAGGAAGCACCATTCTG 59.499 50.000 9.57 0.00 42.04 3.02
2311 2362 2.738000 GCAACAACAATTCACTGTGCCA 60.738 45.455 2.12 0.00 0.00 4.92
2313 2364 1.860326 GGCAACAACAATTCACTGTGC 59.140 47.619 2.12 0.00 0.00 4.57
2314 2365 3.374745 GAGGCAACAACAATTCACTGTG 58.625 45.455 0.17 0.17 41.41 3.66
2315 2366 2.362077 GGAGGCAACAACAATTCACTGT 59.638 45.455 0.00 0.00 41.41 3.55
2316 2367 2.288395 GGGAGGCAACAACAATTCACTG 60.288 50.000 0.00 0.00 41.41 3.66
2318 2369 1.963515 AGGGAGGCAACAACAATTCAC 59.036 47.619 0.00 0.00 41.41 3.18
2319 2370 2.238521 GAGGGAGGCAACAACAATTCA 58.761 47.619 0.00 0.00 41.41 2.57
2320 2371 1.546029 GGAGGGAGGCAACAACAATTC 59.454 52.381 0.00 0.00 41.41 2.17
2324 2377 1.455849 CTGGAGGGAGGCAACAACA 59.544 57.895 0.00 0.00 41.41 3.33
2329 2382 1.719063 AAGTTGCTGGAGGGAGGCAA 61.719 55.000 0.00 0.00 42.54 4.52
2332 2385 0.984230 TGTAAGTTGCTGGAGGGAGG 59.016 55.000 0.00 0.00 0.00 4.30
2351 2404 3.181445 TGACCAGAGCACACAAATAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
2355 2408 3.568007 GGTTTGACCAGAGCACACAAATA 59.432 43.478 0.00 0.00 38.42 1.40
2413 2468 4.576463 CACTAGTTCAAGAGTTGTTGGCTT 59.424 41.667 0.00 0.00 0.00 4.35
2443 2498 2.094675 CAGCAATCAAAAGGGATCCGT 58.905 47.619 5.45 2.61 0.00 4.69
2487 2542 3.007506 TCCACGCCTAAGATCAAACTTCA 59.992 43.478 0.00 0.00 0.00 3.02
2488 2543 3.596214 TCCACGCCTAAGATCAAACTTC 58.404 45.455 0.00 0.00 0.00 3.01
2490 2545 2.678190 GCTCCACGCCTAAGATCAAACT 60.678 50.000 0.00 0.00 0.00 2.66
2501 2556 0.398318 AAAAGAGAAGCTCCACGCCT 59.602 50.000 0.00 0.00 40.39 5.52
2532 2587 8.833450 ATCAATGAAATGATACGCAAGCTTTGC 61.833 37.037 0.00 3.35 44.24 3.68
2533 2588 5.801444 TCAATGAAATGATACGCAAGCTTTG 59.199 36.000 0.00 0.00 45.62 2.77
2534 2589 5.953183 TCAATGAAATGATACGCAAGCTTT 58.047 33.333 0.00 0.00 45.62 3.51
2535 2590 5.565592 TCAATGAAATGATACGCAAGCTT 57.434 34.783 0.00 0.00 45.62 3.74
2536 2591 5.762825 ATCAATGAAATGATACGCAAGCT 57.237 34.783 0.00 0.00 38.25 3.74
2537 2592 7.912949 TTTATCAATGAAATGATACGCAAGC 57.087 32.000 0.00 0.00 40.92 4.01
2566 2621 9.880157 TGTACCACCTCTTGTATTTATTCTAAC 57.120 33.333 0.00 0.00 0.00 2.34
2568 2623 9.880157 GTTGTACCACCTCTTGTATTTATTCTA 57.120 33.333 0.00 0.00 0.00 2.10
2569 2624 8.380099 TGTTGTACCACCTCTTGTATTTATTCT 58.620 33.333 0.00 0.00 0.00 2.40
2570 2625 8.448615 GTGTTGTACCACCTCTTGTATTTATTC 58.551 37.037 0.00 0.00 0.00 1.75
2571 2626 7.940137 TGTGTTGTACCACCTCTTGTATTTATT 59.060 33.333 0.00 0.00 34.35 1.40
2572 2627 7.455058 TGTGTTGTACCACCTCTTGTATTTAT 58.545 34.615 0.00 0.00 34.35 1.40
2573 2628 6.828788 TGTGTTGTACCACCTCTTGTATTTA 58.171 36.000 0.00 0.00 34.35 1.40
2574 2629 5.686753 TGTGTTGTACCACCTCTTGTATTT 58.313 37.500 0.00 0.00 34.35 1.40
2575 2630 5.298989 TGTGTTGTACCACCTCTTGTATT 57.701 39.130 0.00 0.00 34.35 1.89
2576 2631 4.967084 TGTGTTGTACCACCTCTTGTAT 57.033 40.909 0.00 0.00 34.35 2.29
2577 2632 4.345547 TCATGTGTTGTACCACCTCTTGTA 59.654 41.667 0.00 0.00 34.35 2.41
2578 2633 3.135712 TCATGTGTTGTACCACCTCTTGT 59.864 43.478 0.00 0.00 34.35 3.16
2579 2634 3.498397 GTCATGTGTTGTACCACCTCTTG 59.502 47.826 0.00 0.00 34.35 3.02
2580 2635 3.135712 TGTCATGTGTTGTACCACCTCTT 59.864 43.478 0.00 0.00 34.35 2.85
2581 2636 2.703536 TGTCATGTGTTGTACCACCTCT 59.296 45.455 0.00 0.00 34.35 3.69
2582 2637 2.806244 GTGTCATGTGTTGTACCACCTC 59.194 50.000 0.00 0.00 34.35 3.85
2583 2638 2.805295 CGTGTCATGTGTTGTACCACCT 60.805 50.000 0.00 0.00 34.35 4.00
2584 2639 1.529438 CGTGTCATGTGTTGTACCACC 59.471 52.381 0.00 0.00 34.35 4.61
2585 2640 1.529438 CCGTGTCATGTGTTGTACCAC 59.471 52.381 0.00 0.00 35.86 4.16
2586 2641 1.413077 TCCGTGTCATGTGTTGTACCA 59.587 47.619 0.00 0.00 0.00 3.25
2587 2642 2.157834 TCCGTGTCATGTGTTGTACC 57.842 50.000 0.00 0.00 0.00 3.34
2588 2643 2.159707 GCATCCGTGTCATGTGTTGTAC 60.160 50.000 0.00 0.00 0.00 2.90
2589 2644 2.073056 GCATCCGTGTCATGTGTTGTA 58.927 47.619 0.00 0.00 0.00 2.41
2590 2645 0.874390 GCATCCGTGTCATGTGTTGT 59.126 50.000 0.00 0.00 0.00 3.32
2591 2646 0.873721 TGCATCCGTGTCATGTGTTG 59.126 50.000 0.00 0.00 0.00 3.33
2592 2647 1.536766 CTTGCATCCGTGTCATGTGTT 59.463 47.619 0.00 0.00 0.00 3.32
2593 2648 1.159285 CTTGCATCCGTGTCATGTGT 58.841 50.000 0.00 0.00 0.00 3.72
2594 2649 1.441738 TCTTGCATCCGTGTCATGTG 58.558 50.000 0.00 0.00 0.00 3.21
2595 2650 2.079158 CTTCTTGCATCCGTGTCATGT 58.921 47.619 0.00 0.00 0.00 3.21
2596 2651 1.202110 GCTTCTTGCATCCGTGTCATG 60.202 52.381 0.00 0.00 42.31 3.07
2597 2652 1.089920 GCTTCTTGCATCCGTGTCAT 58.910 50.000 0.00 0.00 42.31 3.06
2598 2653 1.291184 CGCTTCTTGCATCCGTGTCA 61.291 55.000 0.00 0.00 43.06 3.58
2599 2654 1.291877 ACGCTTCTTGCATCCGTGTC 61.292 55.000 0.00 0.00 43.06 3.67
2600 2655 1.301716 ACGCTTCTTGCATCCGTGT 60.302 52.632 0.00 0.00 43.06 4.49
2601 2656 1.133253 CACGCTTCTTGCATCCGTG 59.867 57.895 9.52 9.52 43.06 4.94
2602 2657 1.005037 TCACGCTTCTTGCATCCGT 60.005 52.632 0.00 0.00 43.06 4.69
2603 2658 1.712081 CTCACGCTTCTTGCATCCG 59.288 57.895 0.00 0.00 43.06 4.18
2604 2659 1.300971 TGCTCACGCTTCTTGCATCC 61.301 55.000 0.00 0.00 43.06 3.51
2605 2660 0.731417 ATGCTCACGCTTCTTGCATC 59.269 50.000 0.00 0.00 39.79 3.91
2606 2661 0.450583 CATGCTCACGCTTCTTGCAT 59.549 50.000 0.00 0.00 43.96 3.96
2607 2662 1.579964 CCATGCTCACGCTTCTTGCA 61.580 55.000 0.00 0.00 43.06 4.08
2608 2663 1.136147 CCATGCTCACGCTTCTTGC 59.864 57.895 0.00 0.00 36.97 4.01
2609 2664 0.167470 CACCATGCTCACGCTTCTTG 59.833 55.000 0.00 0.00 36.97 3.02
2610 2665 1.580845 GCACCATGCTCACGCTTCTT 61.581 55.000 0.00 0.00 40.96 2.52
2611 2666 2.037136 GCACCATGCTCACGCTTCT 61.037 57.895 0.00 0.00 40.96 2.85
2612 2667 2.482374 GCACCATGCTCACGCTTC 59.518 61.111 0.00 0.00 40.96 3.86
2613 2668 3.058160 GGCACCATGCTCACGCTT 61.058 61.111 0.13 0.00 44.28 4.68
2616 2671 4.758251 TCCGGCACCATGCTCACG 62.758 66.667 0.00 0.00 44.28 4.35
2617 2672 2.359850 TTCCGGCACCATGCTCAC 60.360 61.111 0.00 0.00 44.28 3.51
2618 2673 1.549243 TACTTCCGGCACCATGCTCA 61.549 55.000 0.00 0.00 44.28 4.26
2619 2674 0.392461 TTACTTCCGGCACCATGCTC 60.392 55.000 0.00 0.00 44.28 4.26
2620 2675 0.037590 TTTACTTCCGGCACCATGCT 59.962 50.000 0.00 0.00 44.28 3.79
2621 2676 0.451783 CTTTACTTCCGGCACCATGC 59.548 55.000 0.00 0.00 44.08 4.06
2622 2677 2.009774 CTCTTTACTTCCGGCACCATG 58.990 52.381 0.00 0.00 0.00 3.66
2623 2678 1.906574 TCTCTTTACTTCCGGCACCAT 59.093 47.619 0.00 0.00 0.00 3.55
2624 2679 1.001633 GTCTCTTTACTTCCGGCACCA 59.998 52.381 0.00 0.00 0.00 4.17
2625 2680 1.001633 TGTCTCTTTACTTCCGGCACC 59.998 52.381 0.00 0.00 0.00 5.01
2626 2681 2.450609 TGTCTCTTTACTTCCGGCAC 57.549 50.000 0.00 0.00 0.00 5.01
2627 2682 2.565391 TCATGTCTCTTTACTTCCGGCA 59.435 45.455 0.00 0.00 0.00 5.69
2628 2683 3.119101 TCTCATGTCTCTTTACTTCCGGC 60.119 47.826 0.00 0.00 0.00 6.13
2629 2684 4.720649 TCTCATGTCTCTTTACTTCCGG 57.279 45.455 0.00 0.00 0.00 5.14
2630 2685 4.505922 GCATCTCATGTCTCTTTACTTCCG 59.494 45.833 0.00 0.00 0.00 4.30
2631 2686 5.669477 AGCATCTCATGTCTCTTTACTTCC 58.331 41.667 0.00 0.00 0.00 3.46
2632 2687 5.458452 CGAGCATCTCATGTCTCTTTACTTC 59.542 44.000 0.00 0.00 33.90 3.01
2633 2688 5.126222 TCGAGCATCTCATGTCTCTTTACTT 59.874 40.000 0.00 0.00 33.90 2.24
2634 2689 4.642437 TCGAGCATCTCATGTCTCTTTACT 59.358 41.667 0.00 0.00 33.90 2.24
2635 2690 4.737765 GTCGAGCATCTCATGTCTCTTTAC 59.262 45.833 0.00 0.00 33.90 2.01
2636 2691 4.202060 GGTCGAGCATCTCATGTCTCTTTA 60.202 45.833 10.30 0.00 33.90 1.85
2637 2692 3.430098 GGTCGAGCATCTCATGTCTCTTT 60.430 47.826 10.30 0.00 33.90 2.52
2638 2693 2.100584 GGTCGAGCATCTCATGTCTCTT 59.899 50.000 10.30 0.00 33.90 2.85
2639 2694 1.680735 GGTCGAGCATCTCATGTCTCT 59.319 52.381 10.30 0.00 33.90 3.10
2640 2695 1.269517 GGGTCGAGCATCTCATGTCTC 60.270 57.143 17.59 0.00 33.23 3.36
2641 2696 0.749649 GGGTCGAGCATCTCATGTCT 59.250 55.000 17.59 0.00 0.00 3.41
2642 2697 0.461548 TGGGTCGAGCATCTCATGTC 59.538 55.000 17.59 0.00 0.00 3.06
2643 2698 0.904649 TTGGGTCGAGCATCTCATGT 59.095 50.000 17.59 0.00 0.00 3.21
2644 2699 2.028420 TTTGGGTCGAGCATCTCATG 57.972 50.000 17.59 0.00 0.00 3.07
2645 2700 4.422073 TTATTTGGGTCGAGCATCTCAT 57.578 40.909 17.59 3.39 0.00 2.90
2646 2701 3.904800 TTATTTGGGTCGAGCATCTCA 57.095 42.857 17.59 1.79 0.00 3.27
2647 2702 4.442706 TCTTTATTTGGGTCGAGCATCTC 58.557 43.478 17.59 0.00 0.00 2.75
2648 2703 4.487714 TCTTTATTTGGGTCGAGCATCT 57.512 40.909 17.59 0.31 0.00 2.90
2649 2704 6.293462 GGTTATCTTTATTTGGGTCGAGCATC 60.293 42.308 17.59 0.00 0.00 3.91
2650 2705 5.531287 GGTTATCTTTATTTGGGTCGAGCAT 59.469 40.000 17.59 4.02 0.00 3.79
2651 2706 4.879545 GGTTATCTTTATTTGGGTCGAGCA 59.120 41.667 17.59 0.00 0.00 4.26
2652 2707 4.275196 GGGTTATCTTTATTTGGGTCGAGC 59.725 45.833 5.93 5.93 0.00 5.03
2653 2708 5.433526 TGGGTTATCTTTATTTGGGTCGAG 58.566 41.667 0.00 0.00 0.00 4.04
2654 2709 5.438698 TGGGTTATCTTTATTTGGGTCGA 57.561 39.130 0.00 0.00 0.00 4.20
2655 2710 6.709018 ATTGGGTTATCTTTATTTGGGTCG 57.291 37.500 0.00 0.00 0.00 4.79
2661 2716 9.797556 GCGAGTTTAATTGGGTTATCTTTATTT 57.202 29.630 0.00 0.00 0.00 1.40
2662 2717 8.410912 GGCGAGTTTAATTGGGTTATCTTTATT 58.589 33.333 0.00 0.00 0.00 1.40
2663 2718 7.255001 CGGCGAGTTTAATTGGGTTATCTTTAT 60.255 37.037 0.00 0.00 0.00 1.40
2664 2719 6.037391 CGGCGAGTTTAATTGGGTTATCTTTA 59.963 38.462 0.00 0.00 0.00 1.85
2665 2720 5.163693 CGGCGAGTTTAATTGGGTTATCTTT 60.164 40.000 0.00 0.00 0.00 2.52
2666 2721 4.334481 CGGCGAGTTTAATTGGGTTATCTT 59.666 41.667 0.00 0.00 0.00 2.40
2667 2722 3.875134 CGGCGAGTTTAATTGGGTTATCT 59.125 43.478 0.00 0.00 0.00 1.98
2668 2723 3.872771 TCGGCGAGTTTAATTGGGTTATC 59.127 43.478 4.99 0.00 0.00 1.75
2669 2724 3.624410 GTCGGCGAGTTTAATTGGGTTAT 59.376 43.478 11.20 0.00 0.00 1.89
2670 2725 3.002102 GTCGGCGAGTTTAATTGGGTTA 58.998 45.455 11.20 0.00 0.00 2.85
2671 2726 1.808343 GTCGGCGAGTTTAATTGGGTT 59.192 47.619 11.20 0.00 0.00 4.11
2672 2727 1.445871 GTCGGCGAGTTTAATTGGGT 58.554 50.000 11.20 0.00 0.00 4.51
2673 2728 0.730840 GGTCGGCGAGTTTAATTGGG 59.269 55.000 11.20 0.00 0.00 4.12
2674 2729 1.444836 TGGTCGGCGAGTTTAATTGG 58.555 50.000 11.20 0.00 0.00 3.16
2675 2730 3.187637 TCTTTGGTCGGCGAGTTTAATTG 59.812 43.478 11.20 0.00 0.00 2.32
2676 2731 3.404899 TCTTTGGTCGGCGAGTTTAATT 58.595 40.909 11.20 0.00 0.00 1.40
2677 2732 3.048337 TCTTTGGTCGGCGAGTTTAAT 57.952 42.857 11.20 0.00 0.00 1.40
2678 2733 2.529780 TCTTTGGTCGGCGAGTTTAA 57.470 45.000 11.20 0.00 0.00 1.52
2679 2734 2.409975 CTTCTTTGGTCGGCGAGTTTA 58.590 47.619 11.20 0.00 0.00 2.01
2680 2735 1.226746 CTTCTTTGGTCGGCGAGTTT 58.773 50.000 11.20 0.00 0.00 2.66
2681 2736 1.228657 GCTTCTTTGGTCGGCGAGTT 61.229 55.000 11.20 0.00 0.00 3.01
2682 2737 1.668151 GCTTCTTTGGTCGGCGAGT 60.668 57.895 11.20 0.00 0.00 4.18
2683 2738 1.227999 TTGCTTCTTTGGTCGGCGAG 61.228 55.000 11.20 0.00 0.00 5.03
2684 2739 0.605319 ATTGCTTCTTTGGTCGGCGA 60.605 50.000 4.99 4.99 0.00 5.54
2685 2740 0.179189 GATTGCTTCTTTGGTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
2686 2741 0.171231 GGATTGCTTCTTTGGTCGGC 59.829 55.000 0.00 0.00 0.00 5.54
2687 2742 0.811281 GGGATTGCTTCTTTGGTCGG 59.189 55.000 0.00 0.00 0.00 4.79
2688 2743 1.200020 GTGGGATTGCTTCTTTGGTCG 59.800 52.381 0.00 0.00 0.00 4.79
2689 2744 1.546029 GGTGGGATTGCTTCTTTGGTC 59.454 52.381 0.00 0.00 0.00 4.02
2690 2745 1.632589 GGTGGGATTGCTTCTTTGGT 58.367 50.000 0.00 0.00 0.00 3.67
2691 2746 0.527565 CGGTGGGATTGCTTCTTTGG 59.472 55.000 0.00 0.00 0.00 3.28
2692 2747 1.200020 GTCGGTGGGATTGCTTCTTTG 59.800 52.381 0.00 0.00 0.00 2.77
2693 2748 1.202879 TGTCGGTGGGATTGCTTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
2694 2749 0.400213 TGTCGGTGGGATTGCTTCTT 59.600 50.000 0.00 0.00 0.00 2.52
2695 2750 0.400213 TTGTCGGTGGGATTGCTTCT 59.600 50.000 0.00 0.00 0.00 2.85
2696 2751 0.521735 GTTGTCGGTGGGATTGCTTC 59.478 55.000 0.00 0.00 0.00 3.86
2697 2752 0.110486 AGTTGTCGGTGGGATTGCTT 59.890 50.000 0.00 0.00 0.00 3.91
2698 2753 0.981183 TAGTTGTCGGTGGGATTGCT 59.019 50.000 0.00 0.00 0.00 3.91
2699 2754 1.369625 CTAGTTGTCGGTGGGATTGC 58.630 55.000 0.00 0.00 0.00 3.56
2700 2755 2.012051 GCCTAGTTGTCGGTGGGATTG 61.012 57.143 0.00 0.00 0.00 2.67
2701 2756 0.252197 GCCTAGTTGTCGGTGGGATT 59.748 55.000 0.00 0.00 0.00 3.01
2702 2757 0.907704 TGCCTAGTTGTCGGTGGGAT 60.908 55.000 0.00 0.00 0.00 3.85
2703 2758 1.122632 TTGCCTAGTTGTCGGTGGGA 61.123 55.000 0.00 0.00 0.00 4.37
2704 2759 0.953960 GTTGCCTAGTTGTCGGTGGG 60.954 60.000 0.00 0.00 0.00 4.61
2705 2760 0.953960 GGTTGCCTAGTTGTCGGTGG 60.954 60.000 0.00 0.00 0.00 4.61
2706 2761 0.250124 TGGTTGCCTAGTTGTCGGTG 60.250 55.000 0.00 0.00 0.00 4.94
2707 2762 0.470766 TTGGTTGCCTAGTTGTCGGT 59.529 50.000 0.00 0.00 0.00 4.69
2708 2763 0.872388 GTTGGTTGCCTAGTTGTCGG 59.128 55.000 0.00 0.00 0.00 4.79
2709 2764 1.588674 TGTTGGTTGCCTAGTTGTCG 58.411 50.000 0.00 0.00 0.00 4.35
2710 2765 3.412386 AGATGTTGGTTGCCTAGTTGTC 58.588 45.455 0.00 0.00 0.00 3.18
2711 2766 3.412386 GAGATGTTGGTTGCCTAGTTGT 58.588 45.455 0.00 0.00 0.00 3.32
2712 2767 2.749621 GGAGATGTTGGTTGCCTAGTTG 59.250 50.000 0.00 0.00 0.00 3.16
2713 2768 2.375174 TGGAGATGTTGGTTGCCTAGTT 59.625 45.455 0.00 0.00 0.00 2.24
2714 2769 1.985159 TGGAGATGTTGGTTGCCTAGT 59.015 47.619 0.00 0.00 0.00 2.57
2715 2770 2.787473 TGGAGATGTTGGTTGCCTAG 57.213 50.000 0.00 0.00 0.00 3.02
2716 2771 3.517296 TTTGGAGATGTTGGTTGCCTA 57.483 42.857 0.00 0.00 0.00 3.93
2717 2772 2.380064 TTTGGAGATGTTGGTTGCCT 57.620 45.000 0.00 0.00 0.00 4.75
2718 2773 2.094026 GGATTTGGAGATGTTGGTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
2719 2774 2.562298 TGGATTTGGAGATGTTGGTTGC 59.438 45.455 0.00 0.00 0.00 4.17
2720 2775 3.573538 TGTGGATTTGGAGATGTTGGTTG 59.426 43.478 0.00 0.00 0.00 3.77
2721 2776 3.573967 GTGTGGATTTGGAGATGTTGGTT 59.426 43.478 0.00 0.00 0.00 3.67
2722 2777 3.157087 GTGTGGATTTGGAGATGTTGGT 58.843 45.455 0.00 0.00 0.00 3.67
2723 2778 2.493278 GGTGTGGATTTGGAGATGTTGG 59.507 50.000 0.00 0.00 0.00 3.77
2724 2779 2.162208 CGGTGTGGATTTGGAGATGTTG 59.838 50.000 0.00 0.00 0.00 3.33
2725 2780 2.039746 TCGGTGTGGATTTGGAGATGTT 59.960 45.455 0.00 0.00 0.00 2.71
2726 2781 1.628340 TCGGTGTGGATTTGGAGATGT 59.372 47.619 0.00 0.00 0.00 3.06
2727 2782 2.283298 CTCGGTGTGGATTTGGAGATG 58.717 52.381 0.00 0.00 0.00 2.90
2728 2783 1.210478 CCTCGGTGTGGATTTGGAGAT 59.790 52.381 0.00 0.00 0.00 2.75
2729 2784 0.613260 CCTCGGTGTGGATTTGGAGA 59.387 55.000 0.00 0.00 0.00 3.71
2730 2785 0.613260 TCCTCGGTGTGGATTTGGAG 59.387 55.000 0.00 0.00 0.00 3.86
2731 2786 0.323629 GTCCTCGGTGTGGATTTGGA 59.676 55.000 0.00 0.00 35.87 3.53
2732 2787 0.036164 TGTCCTCGGTGTGGATTTGG 59.964 55.000 0.00 0.00 35.87 3.28
2733 2788 1.156736 GTGTCCTCGGTGTGGATTTG 58.843 55.000 0.00 0.00 35.87 2.32
2734 2789 0.036306 GGTGTCCTCGGTGTGGATTT 59.964 55.000 0.00 0.00 35.87 2.17
2735 2790 1.677552 GGTGTCCTCGGTGTGGATT 59.322 57.895 0.00 0.00 35.87 3.01
2736 2791 2.646175 CGGTGTCCTCGGTGTGGAT 61.646 63.158 0.00 0.00 35.87 3.41
2737 2792 3.299977 CGGTGTCCTCGGTGTGGA 61.300 66.667 0.00 0.00 0.00 4.02
2741 2796 4.778415 CTCGCGGTGTCCTCGGTG 62.778 72.222 6.13 0.00 0.00 4.94
2744 2799 4.717629 TTGCTCGCGGTGTCCTCG 62.718 66.667 6.13 0.00 0.00 4.63
2745 2800 2.357034 TTTGCTCGCGGTGTCCTC 60.357 61.111 6.13 0.00 0.00 3.71
2746 2801 2.665185 GTTTGCTCGCGGTGTCCT 60.665 61.111 6.13 0.00 0.00 3.85
2747 2802 2.443957 CTTGTTTGCTCGCGGTGTCC 62.444 60.000 6.13 0.00 0.00 4.02
2748 2803 1.082756 CTTGTTTGCTCGCGGTGTC 60.083 57.895 6.13 0.00 0.00 3.67
2749 2804 1.522806 TCTTGTTTGCTCGCGGTGT 60.523 52.632 6.13 0.00 0.00 4.16
2750 2805 1.082756 GTCTTGTTTGCTCGCGGTG 60.083 57.895 6.13 0.07 0.00 4.94
2751 2806 1.092921 TTGTCTTGTTTGCTCGCGGT 61.093 50.000 6.13 0.00 0.00 5.68
2752 2807 0.657368 GTTGTCTTGTTTGCTCGCGG 60.657 55.000 6.13 0.00 0.00 6.46
2753 2808 0.027455 TGTTGTCTTGTTTGCTCGCG 59.973 50.000 0.00 0.00 0.00 5.87
2754 2809 1.466855 GTGTTGTCTTGTTTGCTCGC 58.533 50.000 0.00 0.00 0.00 5.03
2755 2810 1.670811 AGGTGTTGTCTTGTTTGCTCG 59.329 47.619 0.00 0.00 0.00 5.03
2756 2811 3.128589 TGAAGGTGTTGTCTTGTTTGCTC 59.871 43.478 0.00 0.00 0.00 4.26
2757 2812 3.088532 TGAAGGTGTTGTCTTGTTTGCT 58.911 40.909 0.00 0.00 0.00 3.91
2758 2813 3.179048 GTGAAGGTGTTGTCTTGTTTGC 58.821 45.455 0.00 0.00 0.00 3.68
2759 2814 3.126171 TCGTGAAGGTGTTGTCTTGTTTG 59.874 43.478 0.00 0.00 0.00 2.93
2760 2815 3.340034 TCGTGAAGGTGTTGTCTTGTTT 58.660 40.909 0.00 0.00 0.00 2.83
2761 2816 2.980568 TCGTGAAGGTGTTGTCTTGTT 58.019 42.857 0.00 0.00 0.00 2.83
2762 2817 2.684001 TCGTGAAGGTGTTGTCTTGT 57.316 45.000 0.00 0.00 0.00 3.16
2763 2818 3.592381 CTTCGTGAAGGTGTTGTCTTG 57.408 47.619 1.57 0.00 34.87 3.02
2774 2829 2.417339 TGTCGTTCTCCTTCGTGAAG 57.583 50.000 2.57 2.57 38.14 3.02
2775 2830 2.295070 TGATGTCGTTCTCCTTCGTGAA 59.705 45.455 0.00 0.00 0.00 3.18
2776 2831 1.883926 TGATGTCGTTCTCCTTCGTGA 59.116 47.619 0.00 0.00 0.00 4.35
2777 2832 2.347697 TGATGTCGTTCTCCTTCGTG 57.652 50.000 0.00 0.00 0.00 4.35
2778 2833 2.557056 TCTTGATGTCGTTCTCCTTCGT 59.443 45.455 0.00 0.00 0.00 3.85
2779 2834 3.217599 TCTTGATGTCGTTCTCCTTCG 57.782 47.619 0.00 0.00 0.00 3.79
2780 2835 5.004922 AGATCTTGATGTCGTTCTCCTTC 57.995 43.478 0.00 0.00 0.00 3.46
2781 2836 4.439426 CGAGATCTTGATGTCGTTCTCCTT 60.439 45.833 18.08 0.00 33.39 3.36
2782 2837 3.066064 CGAGATCTTGATGTCGTTCTCCT 59.934 47.826 18.08 0.00 33.39 3.69
2783 2838 3.181495 ACGAGATCTTGATGTCGTTCTCC 60.181 47.826 23.71 0.00 46.22 3.71
2784 2839 4.022464 ACGAGATCTTGATGTCGTTCTC 57.978 45.455 23.71 7.91 46.22 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.