Multiple sequence alignment - TraesCS3B01G159700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G159700 chr3B 100.000 2440 0 0 1 2440 154483920 154486359 0.000000e+00 4506.0
1 TraesCS3B01G159700 chr3B 100.000 252 0 0 2715 2966 154486634 154486885 1.610000e-127 466.0
2 TraesCS3B01G159700 chr3B 90.625 64 1 1 2377 2440 575865538 575865596 2.450000e-11 80.5
3 TraesCS3B01G159700 chr3B 77.600 125 23 5 1601 1722 472306319 472306197 1.470000e-08 71.3
4 TraesCS3B01G159700 chr3D 93.078 2066 76 19 192 2223 103873187 103875219 0.000000e+00 2961.0
5 TraesCS3B01G159700 chr3D 88.235 221 14 6 2746 2966 103875219 103875427 1.360000e-63 254.0
6 TraesCS3B01G159700 chr3D 92.025 163 4 3 5 166 103872938 103873092 1.380000e-53 220.0
7 TraesCS3B01G159700 chr3D 98.551 69 1 0 2309 2377 213373563 213373631 4.010000e-24 122.0
8 TraesCS3B01G159700 chr3D 71.341 328 80 13 1601 1921 362856090 362856410 4.100000e-09 73.1
9 TraesCS3B01G159700 chr3D 76.984 126 22 7 1601 1722 362424014 362423892 6.860000e-07 65.8
10 TraesCS3B01G159700 chr3A 91.663 2051 122 28 187 2223 552318009 552315994 0.000000e+00 2795.0
11 TraesCS3B01G159700 chrUn 98.551 69 1 0 2309 2377 206789746 206789814 4.010000e-24 122.0
12 TraesCS3B01G159700 chrUn 98.551 69 1 0 2309 2377 353899733 353899665 4.010000e-24 122.0
13 TraesCS3B01G159700 chrUn 90.476 63 1 1 2378 2440 433173443 433173500 8.810000e-11 78.7
14 TraesCS3B01G159700 chr7D 98.551 69 1 0 2309 2377 203491098 203491166 4.010000e-24 122.0
15 TraesCS3B01G159700 chr7D 98.551 69 1 0 2309 2377 381911075 381911143 4.010000e-24 122.0
16 TraesCS3B01G159700 chr6D 98.551 69 1 0 2309 2377 124508622 124508690 4.010000e-24 122.0
17 TraesCS3B01G159700 chr6D 98.551 69 1 0 2309 2377 283231410 283231342 4.010000e-24 122.0
18 TraesCS3B01G159700 chr4D 98.551 69 1 0 2309 2377 123294814 123294882 4.010000e-24 122.0
19 TraesCS3B01G159700 chr1A 98.551 69 1 0 2309 2377 359902583 359902515 4.010000e-24 122.0
20 TraesCS3B01G159700 chr6B 90.476 63 1 1 2378 2440 394443130 394443073 8.810000e-11 78.7
21 TraesCS3B01G159700 chr6B 97.500 40 1 0 2269 2308 264976177 264976216 5.300000e-08 69.4
22 TraesCS3B01G159700 chr6B 97.500 40 1 0 2269 2308 388140629 388140590 5.300000e-08 69.4
23 TraesCS3B01G159700 chr6A 90.476 63 1 1 2378 2440 289134625 289134682 8.810000e-11 78.7
24 TraesCS3B01G159700 chr6A 97.500 40 1 0 2269 2308 597225636 597225597 5.300000e-08 69.4
25 TraesCS3B01G159700 chr5B 90.476 63 1 1 2378 2440 455590395 455590338 8.810000e-11 78.7
26 TraesCS3B01G159700 chr5B 97.500 40 1 0 2269 2308 533043718 533043757 5.300000e-08 69.4
27 TraesCS3B01G159700 chr5A 90.476 63 1 1 2378 2440 16596933 16596876 8.810000e-11 78.7
28 TraesCS3B01G159700 chr5A 90.476 63 1 1 2378 2440 300078975 300079032 8.810000e-11 78.7
29 TraesCS3B01G159700 chr2A 90.476 63 1 1 2378 2440 735198646 735198703 8.810000e-11 78.7
30 TraesCS3B01G159700 chr1B 90.476 63 1 1 2378 2440 583606112 583606055 8.810000e-11 78.7
31 TraesCS3B01G159700 chr2B 97.500 40 1 0 2269 2308 10528069 10528108 5.300000e-08 69.4
32 TraesCS3B01G159700 chr2B 97.500 40 1 0 2269 2308 357460004 357459965 5.300000e-08 69.4
33 TraesCS3B01G159700 chr2B 97.500 40 1 0 2269 2308 357527312 357527351 5.300000e-08 69.4
34 TraesCS3B01G159700 chr2B 97.500 40 1 0 2269 2308 391178941 391178902 5.300000e-08 69.4
35 TraesCS3B01G159700 chr2B 97.500 40 1 0 2269 2308 405558885 405558924 5.300000e-08 69.4
36 TraesCS3B01G159700 chr2B 100.000 36 0 0 2715 2750 357335487 357335522 1.910000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G159700 chr3B 154483920 154486885 2965 False 2486 4506 100.000000 1 2966 2 chr3B.!!$F2 2965
1 TraesCS3B01G159700 chr3D 103872938 103875427 2489 False 1145 2961 91.112667 5 2966 3 chr3D.!!$F3 2961
2 TraesCS3B01G159700 chr3A 552315994 552318009 2015 True 2795 2795 91.663000 187 2223 1 chr3A.!!$R1 2036

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.250338 GCCGCCCCGAGATTAGATTT 60.250 55.0 0.00 0.0 0.00 2.17 F
421 504 0.743097 GCATGCTGAATGGTCTTCCC 59.257 55.0 11.37 0.0 36.71 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 1490 0.898320 TCTCCTCCTTGTAGCACAGC 59.102 55.0 0.0 0.0 0.0 4.40 R
2403 2531 0.032813 ATGGGTTGGGATTGCCTGAG 60.033 55.0 0.0 0.0 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.681486 ACTAGTTCCCGTTTACTAATGTTTTT 57.319 30.769 0.00 0.00 0.00 1.94
68 69 9.578576 AATATGCCACTATTCAACATCACTATT 57.421 29.630 0.00 0.00 0.00 1.73
69 70 6.682423 TGCCACTATTCAACATCACTATTG 57.318 37.500 0.00 0.00 0.00 1.90
70 71 5.589855 TGCCACTATTCAACATCACTATTGG 59.410 40.000 0.00 0.00 0.00 3.16
71 72 5.590259 GCCACTATTCAACATCACTATTGGT 59.410 40.000 0.00 0.00 0.00 3.67
72 73 6.765989 GCCACTATTCAACATCACTATTGGTA 59.234 38.462 0.00 0.00 0.00 3.25
73 74 7.445402 GCCACTATTCAACATCACTATTGGTAT 59.555 37.037 0.00 0.00 0.00 2.73
100 101 4.750098 ACGTCTCAAACTAAGAATGTGTGG 59.250 41.667 0.00 0.00 0.00 4.17
132 133 6.590677 GTCAACTCTTAATACTTGAGGGACAC 59.409 42.308 0.00 0.00 36.82 3.67
159 160 2.913060 GTAGAGCCGCCCCGAGAT 60.913 66.667 0.00 0.00 0.00 2.75
160 161 2.123425 TAGAGCCGCCCCGAGATT 60.123 61.111 0.00 0.00 0.00 2.40
161 162 1.152138 TAGAGCCGCCCCGAGATTA 59.848 57.895 0.00 0.00 0.00 1.75
162 163 0.894184 TAGAGCCGCCCCGAGATTAG 60.894 60.000 0.00 0.00 0.00 1.73
163 164 2.123425 AGCCGCCCCGAGATTAGA 60.123 61.111 0.00 0.00 0.00 2.10
164 165 1.534235 AGCCGCCCCGAGATTAGAT 60.534 57.895 0.00 0.00 0.00 1.98
165 166 1.122019 AGCCGCCCCGAGATTAGATT 61.122 55.000 0.00 0.00 0.00 2.40
166 167 0.250338 GCCGCCCCGAGATTAGATTT 60.250 55.000 0.00 0.00 0.00 2.17
167 168 1.814248 GCCGCCCCGAGATTAGATTTT 60.814 52.381 0.00 0.00 0.00 1.82
168 169 1.873591 CCGCCCCGAGATTAGATTTTG 59.126 52.381 0.00 0.00 0.00 2.44
169 170 2.484770 CCGCCCCGAGATTAGATTTTGA 60.485 50.000 0.00 0.00 0.00 2.69
174 175 6.402550 CGCCCCGAGATTAGATTTTGATATTG 60.403 42.308 0.00 0.00 0.00 1.90
230 313 5.268118 TGTGCACATATCTTCCACTCTAG 57.732 43.478 17.42 0.00 0.00 2.43
244 327 2.420372 CACTCTAGAGCAGTCAACGCTA 59.580 50.000 19.97 0.00 40.63 4.26
267 350 3.372060 CTCGAATAGACACGCATGCTTA 58.628 45.455 17.13 0.93 0.00 3.09
269 352 2.218759 CGAATAGACACGCATGCTTACC 59.781 50.000 17.13 1.48 0.00 2.85
270 353 2.979814 ATAGACACGCATGCTTACCA 57.020 45.000 17.13 0.00 0.00 3.25
271 354 2.293677 TAGACACGCATGCTTACCAG 57.706 50.000 17.13 0.80 0.00 4.00
376 459 1.807142 GTAAGCTGCTGACCTGGTTTC 59.193 52.381 5.81 0.00 35.24 2.78
421 504 0.743097 GCATGCTGAATGGTCTTCCC 59.257 55.000 11.37 0.00 36.71 3.97
522 606 6.939132 AGCTGAATCTTCTGGATTTGTATG 57.061 37.500 0.00 0.00 43.90 2.39
523 607 6.656902 AGCTGAATCTTCTGGATTTGTATGA 58.343 36.000 0.00 0.00 43.90 2.15
561 645 1.692519 ACTAGGAACAAACAGGACGCT 59.307 47.619 0.00 0.00 0.00 5.07
627 711 1.566018 GGCCGTTTCTTGGTCAGACG 61.566 60.000 0.00 0.00 0.00 4.18
676 766 1.209261 CTTCCTCTTCCTCTTGCTCCC 59.791 57.143 0.00 0.00 0.00 4.30
679 769 1.632920 CCTCTTCCTCTTGCTCCCTTT 59.367 52.381 0.00 0.00 0.00 3.11
680 770 2.355615 CCTCTTCCTCTTGCTCCCTTTC 60.356 54.545 0.00 0.00 0.00 2.62
847 947 3.803082 CAATGGTGGCGCGGTCAG 61.803 66.667 8.83 0.00 0.00 3.51
848 948 4.015406 AATGGTGGCGCGGTCAGA 62.015 61.111 8.83 0.00 0.00 3.27
849 949 3.545124 AATGGTGGCGCGGTCAGAA 62.545 57.895 8.83 0.00 0.00 3.02
850 950 3.545124 ATGGTGGCGCGGTCAGAAA 62.545 57.895 8.83 0.00 0.00 2.52
851 951 3.723348 GGTGGCGCGGTCAGAAAC 61.723 66.667 8.83 0.00 0.00 2.78
852 952 2.665185 GTGGCGCGGTCAGAAACT 60.665 61.111 8.83 0.00 0.00 2.66
853 953 2.664851 TGGCGCGGTCAGAAACTG 60.665 61.111 8.83 0.00 37.31 3.16
940 1040 1.889105 CGCATTCCCCATGTCCTCG 60.889 63.158 0.00 0.00 34.98 4.63
963 1063 2.125106 CTCCACCGGTAAGGCAGC 60.125 66.667 6.87 0.00 46.52 5.25
1164 1268 2.488355 GCGATCGTCACGGAGGAA 59.512 61.111 17.81 0.00 30.29 3.36
1497 1601 1.843421 CCGAGGCCCCATCCAAATA 59.157 57.895 0.00 0.00 0.00 1.40
1510 1614 5.707298 CCCATCCAAATATCATGGTACTGAC 59.293 44.000 7.24 0.00 39.09 3.51
1517 1621 7.285172 CCAAATATCATGGTACTGACAAATCCA 59.715 37.037 0.00 0.00 33.08 3.41
1519 1623 4.632327 TCATGGTACTGACAAATCCACA 57.368 40.909 0.00 0.00 0.00 4.17
1614 1737 2.165319 ACAGGAACTTCAACTACGGC 57.835 50.000 0.00 0.00 34.60 5.68
1968 2091 1.455959 CCAGCTCCCGTACTAGCCT 60.456 63.158 7.79 0.00 39.64 4.58
1969 2092 0.178998 CCAGCTCCCGTACTAGCCTA 60.179 60.000 7.79 0.00 39.64 3.93
1997 2120 0.179171 GCCTCACGTTTCTCGATCGA 60.179 55.000 18.32 18.32 42.86 3.59
2044 2172 7.271438 GCTAGTTGCTTGAATTTGTAGTTTAGC 59.729 37.037 0.00 0.00 38.95 3.09
2055 2183 7.845066 ATTTGTAGTTTAGCTAAGCCTACAC 57.155 36.000 29.29 16.89 0.00 2.90
2133 2261 8.218441 TCTTTCTTAAACAACATTGATCGTACG 58.782 33.333 9.53 9.53 0.00 3.67
2134 2262 6.397831 TCTTAAACAACATTGATCGTACGG 57.602 37.500 16.52 0.00 0.00 4.02
2155 2283 3.730715 GGTCAACAAGTGAAATTGAAGCG 59.269 43.478 0.00 0.00 38.23 4.68
2162 2290 0.516877 TGAAATTGAAGCGAGCACGG 59.483 50.000 5.52 0.00 40.15 4.94
2179 2307 3.248602 GCACGGATGACAAATATCCTGAC 59.751 47.826 0.00 0.00 41.57 3.51
2216 2344 5.855045 ACACCAAGATTCTCTAAAGTCGTT 58.145 37.500 0.00 0.00 0.00 3.85
2223 2351 6.750148 AGATTCTCTAAAGTCGTTGTGTCTT 58.250 36.000 0.00 0.00 0.00 3.01
2224 2352 6.864165 AGATTCTCTAAAGTCGTTGTGTCTTC 59.136 38.462 0.00 0.00 0.00 2.87
2225 2353 4.534168 TCTCTAAAGTCGTTGTGTCTTCG 58.466 43.478 0.00 0.00 0.00 3.79
2226 2354 3.635331 TCTAAAGTCGTTGTGTCTTCGG 58.365 45.455 0.00 0.00 0.00 4.30
2227 2355 2.589798 AAAGTCGTTGTGTCTTCGGA 57.410 45.000 0.00 0.00 0.00 4.55
2228 2356 2.589798 AAGTCGTTGTGTCTTCGGAA 57.410 45.000 0.00 0.00 0.00 4.30
2229 2357 2.135664 AGTCGTTGTGTCTTCGGAAG 57.864 50.000 11.54 11.54 0.00 3.46
2230 2358 1.407979 AGTCGTTGTGTCTTCGGAAGT 59.592 47.619 16.78 0.00 0.00 3.01
2231 2359 2.620115 AGTCGTTGTGTCTTCGGAAGTA 59.380 45.455 16.78 5.64 0.00 2.24
2232 2360 3.067180 AGTCGTTGTGTCTTCGGAAGTAA 59.933 43.478 16.78 4.58 0.00 2.24
2233 2361 3.424529 GTCGTTGTGTCTTCGGAAGTAAG 59.575 47.826 16.78 4.33 0.00 2.34
2234 2362 3.067180 TCGTTGTGTCTTCGGAAGTAAGT 59.933 43.478 16.78 0.00 0.00 2.24
2235 2363 3.800506 CGTTGTGTCTTCGGAAGTAAGTT 59.199 43.478 16.78 0.00 0.00 2.66
2236 2364 4.269363 CGTTGTGTCTTCGGAAGTAAGTTT 59.731 41.667 16.78 0.00 0.00 2.66
2237 2365 5.459762 CGTTGTGTCTTCGGAAGTAAGTTTA 59.540 40.000 16.78 0.00 0.00 2.01
2238 2366 6.345565 CGTTGTGTCTTCGGAAGTAAGTTTAG 60.346 42.308 16.78 1.86 0.00 1.85
2239 2367 5.535333 TGTGTCTTCGGAAGTAAGTTTAGG 58.465 41.667 16.78 0.00 0.00 2.69
2240 2368 5.302568 TGTGTCTTCGGAAGTAAGTTTAGGA 59.697 40.000 16.78 0.00 0.00 2.94
2241 2369 6.014840 TGTGTCTTCGGAAGTAAGTTTAGGAT 60.015 38.462 16.78 0.00 0.00 3.24
2242 2370 7.177216 TGTGTCTTCGGAAGTAAGTTTAGGATA 59.823 37.037 16.78 0.00 0.00 2.59
2243 2371 8.031277 GTGTCTTCGGAAGTAAGTTTAGGATAA 58.969 37.037 16.78 0.00 0.00 1.75
2244 2372 8.248945 TGTCTTCGGAAGTAAGTTTAGGATAAG 58.751 37.037 16.78 0.00 0.00 1.73
2245 2373 7.705752 GTCTTCGGAAGTAAGTTTAGGATAAGG 59.294 40.741 16.78 0.00 0.00 2.69
2246 2374 7.398332 TCTTCGGAAGTAAGTTTAGGATAAGGT 59.602 37.037 16.78 0.00 0.00 3.50
2247 2375 7.486407 TCGGAAGTAAGTTTAGGATAAGGTT 57.514 36.000 0.00 0.00 0.00 3.50
2248 2376 7.910584 TCGGAAGTAAGTTTAGGATAAGGTTT 58.089 34.615 0.00 0.00 0.00 3.27
2249 2377 8.037166 TCGGAAGTAAGTTTAGGATAAGGTTTC 58.963 37.037 0.00 0.00 0.00 2.78
2250 2378 7.279536 CGGAAGTAAGTTTAGGATAAGGTTTCC 59.720 40.741 0.00 0.00 0.00 3.13
2251 2379 7.279536 GGAAGTAAGTTTAGGATAAGGTTTCCG 59.720 40.741 0.00 0.00 38.36 4.30
2252 2380 7.486407 AGTAAGTTTAGGATAAGGTTTCCGA 57.514 36.000 0.00 0.00 38.36 4.55
2253 2381 8.087303 AGTAAGTTTAGGATAAGGTTTCCGAT 57.913 34.615 0.00 0.00 38.36 4.18
2254 2382 8.202811 AGTAAGTTTAGGATAAGGTTTCCGATC 58.797 37.037 0.00 0.00 38.36 3.69
2255 2383 5.926663 AGTTTAGGATAAGGTTTCCGATCC 58.073 41.667 11.98 11.98 39.58 3.36
2256 2384 4.595762 TTAGGATAAGGTTTCCGATCCG 57.404 45.455 13.24 0.00 42.16 4.18
2266 2394 3.884900 CCGATCCGGTTGGTGTTC 58.115 61.111 0.00 0.00 42.73 3.18
2267 2395 1.295423 CCGATCCGGTTGGTGTTCT 59.705 57.895 0.00 0.00 42.73 3.01
2268 2396 1.019278 CCGATCCGGTTGGTGTTCTG 61.019 60.000 0.00 0.00 42.73 3.02
2269 2397 0.037697 CGATCCGGTTGGTGTTCTGA 60.038 55.000 0.00 0.00 36.30 3.27
2270 2398 1.405526 CGATCCGGTTGGTGTTCTGAT 60.406 52.381 0.00 0.00 36.30 2.90
2271 2399 2.159156 CGATCCGGTTGGTGTTCTGATA 60.159 50.000 0.00 0.00 36.30 2.15
2272 2400 3.492656 CGATCCGGTTGGTGTTCTGATAT 60.493 47.826 0.00 0.00 36.30 1.63
2273 2401 3.992943 TCCGGTTGGTGTTCTGATATT 57.007 42.857 0.00 0.00 36.30 1.28
2274 2402 4.295141 TCCGGTTGGTGTTCTGATATTT 57.705 40.909 0.00 0.00 36.30 1.40
2275 2403 4.658063 TCCGGTTGGTGTTCTGATATTTT 58.342 39.130 0.00 0.00 36.30 1.82
2276 2404 4.457603 TCCGGTTGGTGTTCTGATATTTTG 59.542 41.667 0.00 0.00 36.30 2.44
2277 2405 4.165779 CGGTTGGTGTTCTGATATTTTGC 58.834 43.478 0.00 0.00 0.00 3.68
2278 2406 4.165779 GGTTGGTGTTCTGATATTTTGCG 58.834 43.478 0.00 0.00 0.00 4.85
2279 2407 3.485947 TGGTGTTCTGATATTTTGCGC 57.514 42.857 0.00 0.00 0.00 6.09
2280 2408 3.081061 TGGTGTTCTGATATTTTGCGCT 58.919 40.909 9.73 0.00 0.00 5.92
2281 2409 3.505680 TGGTGTTCTGATATTTTGCGCTT 59.494 39.130 9.73 0.00 0.00 4.68
2282 2410 4.022416 TGGTGTTCTGATATTTTGCGCTTT 60.022 37.500 9.73 0.00 0.00 3.51
2283 2411 4.558860 GGTGTTCTGATATTTTGCGCTTTC 59.441 41.667 9.73 0.00 0.00 2.62
2284 2412 5.153513 GTGTTCTGATATTTTGCGCTTTCA 58.846 37.500 9.73 0.00 0.00 2.69
2285 2413 5.801947 GTGTTCTGATATTTTGCGCTTTCAT 59.198 36.000 9.73 0.00 0.00 2.57
2286 2414 6.966632 GTGTTCTGATATTTTGCGCTTTCATA 59.033 34.615 9.73 0.03 0.00 2.15
2287 2415 7.645340 GTGTTCTGATATTTTGCGCTTTCATAT 59.355 33.333 9.73 5.34 0.00 1.78
2288 2416 8.190122 TGTTCTGATATTTTGCGCTTTCATATT 58.810 29.630 9.73 0.00 0.00 1.28
2289 2417 8.685536 GTTCTGATATTTTGCGCTTTCATATTC 58.314 33.333 9.73 0.00 0.00 1.75
2290 2418 8.158169 TCTGATATTTTGCGCTTTCATATTCT 57.842 30.769 9.73 0.00 0.00 2.40
2291 2419 9.271828 TCTGATATTTTGCGCTTTCATATTCTA 57.728 29.630 9.73 0.00 0.00 2.10
2292 2420 9.539139 CTGATATTTTGCGCTTTCATATTCTAG 57.461 33.333 9.73 2.98 0.00 2.43
2293 2421 9.056005 TGATATTTTGCGCTTTCATATTCTAGT 57.944 29.630 9.73 0.00 0.00 2.57
2294 2422 9.884465 GATATTTTGCGCTTTCATATTCTAGTT 57.116 29.630 9.73 0.00 0.00 2.24
2295 2423 9.884465 ATATTTTGCGCTTTCATATTCTAGTTC 57.116 29.630 9.73 0.00 0.00 3.01
2296 2424 5.734855 TTGCGCTTTCATATTCTAGTTCC 57.265 39.130 9.73 0.00 0.00 3.62
2297 2425 5.023533 TGCGCTTTCATATTCTAGTTCCT 57.976 39.130 9.73 0.00 0.00 3.36
2298 2426 5.050490 TGCGCTTTCATATTCTAGTTCCTC 58.950 41.667 9.73 0.00 0.00 3.71
2299 2427 5.050490 GCGCTTTCATATTCTAGTTCCTCA 58.950 41.667 0.00 0.00 0.00 3.86
2300 2428 5.698545 GCGCTTTCATATTCTAGTTCCTCAT 59.301 40.000 0.00 0.00 0.00 2.90
2301 2429 6.203723 GCGCTTTCATATTCTAGTTCCTCATT 59.796 38.462 0.00 0.00 0.00 2.57
2302 2430 7.254932 GCGCTTTCATATTCTAGTTCCTCATTT 60.255 37.037 0.00 0.00 0.00 2.32
2303 2431 8.066595 CGCTTTCATATTCTAGTTCCTCATTTG 58.933 37.037 0.00 0.00 0.00 2.32
2304 2432 9.113838 GCTTTCATATTCTAGTTCCTCATTTGA 57.886 33.333 0.00 0.00 0.00 2.69
2306 2434 8.668510 TTCATATTCTAGTTCCTCATTTGAGC 57.331 34.615 1.90 0.00 40.75 4.26
2307 2435 6.925718 TCATATTCTAGTTCCTCATTTGAGCG 59.074 38.462 1.90 0.00 40.75 5.03
2308 2436 4.801330 TTCTAGTTCCTCATTTGAGCGA 57.199 40.909 1.90 0.00 40.75 4.93
2309 2437 5.344743 TTCTAGTTCCTCATTTGAGCGAT 57.655 39.130 1.90 0.00 40.75 4.58
2310 2438 6.465439 TTCTAGTTCCTCATTTGAGCGATA 57.535 37.500 1.90 0.00 40.75 2.92
2311 2439 5.833082 TCTAGTTCCTCATTTGAGCGATAC 58.167 41.667 1.90 3.87 40.75 2.24
2312 2440 3.798202 AGTTCCTCATTTGAGCGATACC 58.202 45.455 1.90 0.00 40.75 2.73
2313 2441 2.872858 GTTCCTCATTTGAGCGATACCC 59.127 50.000 1.90 0.00 40.75 3.69
2314 2442 2.115427 TCCTCATTTGAGCGATACCCA 58.885 47.619 1.90 0.00 40.75 4.51
2315 2443 2.158957 TCCTCATTTGAGCGATACCCAC 60.159 50.000 1.90 0.00 40.75 4.61
2316 2444 2.158900 CCTCATTTGAGCGATACCCACT 60.159 50.000 1.90 0.00 40.75 4.00
2317 2445 3.535561 CTCATTTGAGCGATACCCACTT 58.464 45.455 0.00 0.00 35.13 3.16
2318 2446 3.270027 TCATTTGAGCGATACCCACTTG 58.730 45.455 0.00 0.00 0.00 3.16
2319 2447 2.107950 TTTGAGCGATACCCACTTGG 57.892 50.000 0.00 0.00 41.37 3.61
2320 2448 1.271856 TTGAGCGATACCCACTTGGA 58.728 50.000 0.00 0.00 37.39 3.53
2321 2449 0.824109 TGAGCGATACCCACTTGGAG 59.176 55.000 0.00 0.00 37.39 3.86
2322 2450 0.530870 GAGCGATACCCACTTGGAGC 60.531 60.000 0.00 0.00 37.39 4.70
2323 2451 0.978146 AGCGATACCCACTTGGAGCT 60.978 55.000 0.00 0.00 37.39 4.09
2324 2452 0.811616 GCGATACCCACTTGGAGCTG 60.812 60.000 0.00 0.00 37.39 4.24
2325 2453 0.824109 CGATACCCACTTGGAGCTGA 59.176 55.000 0.00 0.00 37.39 4.26
2326 2454 1.471676 CGATACCCACTTGGAGCTGAC 60.472 57.143 0.00 0.00 37.39 3.51
2327 2455 0.912486 ATACCCACTTGGAGCTGACC 59.088 55.000 0.00 0.00 37.39 4.02
2328 2456 0.178903 TACCCACTTGGAGCTGACCT 60.179 55.000 0.00 0.00 37.39 3.85
2329 2457 1.062488 ACCCACTTGGAGCTGACCTT 61.062 55.000 0.00 0.00 37.39 3.50
2330 2458 0.322008 CCCACTTGGAGCTGACCTTC 60.322 60.000 0.00 0.00 37.39 3.46
2331 2459 0.397941 CCACTTGGAGCTGACCTTCA 59.602 55.000 0.00 0.00 37.39 3.02
2332 2460 1.517242 CACTTGGAGCTGACCTTCAC 58.483 55.000 0.00 0.00 0.00 3.18
2333 2461 1.071385 CACTTGGAGCTGACCTTCACT 59.929 52.381 0.00 0.00 0.00 3.41
2334 2462 1.771255 ACTTGGAGCTGACCTTCACTT 59.229 47.619 0.00 0.00 0.00 3.16
2335 2463 2.173569 ACTTGGAGCTGACCTTCACTTT 59.826 45.455 0.00 0.00 0.00 2.66
2336 2464 3.217626 CTTGGAGCTGACCTTCACTTTT 58.782 45.455 0.00 0.00 0.00 2.27
2337 2465 2.851195 TGGAGCTGACCTTCACTTTTC 58.149 47.619 0.00 0.00 0.00 2.29
2338 2466 2.172505 TGGAGCTGACCTTCACTTTTCA 59.827 45.455 0.00 0.00 0.00 2.69
2339 2467 2.810852 GGAGCTGACCTTCACTTTTCAG 59.189 50.000 0.00 0.00 38.83 3.02
2340 2468 3.495100 GGAGCTGACCTTCACTTTTCAGA 60.495 47.826 0.00 0.00 38.19 3.27
2341 2469 3.737850 AGCTGACCTTCACTTTTCAGAG 58.262 45.455 1.64 0.00 38.19 3.35
2342 2470 3.389329 AGCTGACCTTCACTTTTCAGAGA 59.611 43.478 1.64 0.00 38.19 3.10
2343 2471 3.496507 GCTGACCTTCACTTTTCAGAGAC 59.503 47.826 1.64 0.00 38.19 3.36
2344 2472 4.697514 CTGACCTTCACTTTTCAGAGACA 58.302 43.478 0.00 0.00 38.19 3.41
2345 2473 4.697514 TGACCTTCACTTTTCAGAGACAG 58.302 43.478 0.00 0.00 0.00 3.51
2346 2474 4.061596 GACCTTCACTTTTCAGAGACAGG 58.938 47.826 0.00 0.00 30.89 4.00
2347 2475 3.181450 ACCTTCACTTTTCAGAGACAGGG 60.181 47.826 0.00 0.00 29.84 4.45
2348 2476 3.406764 CTTCACTTTTCAGAGACAGGGG 58.593 50.000 0.00 0.00 0.00 4.79
2349 2477 1.072331 TCACTTTTCAGAGACAGGGGC 59.928 52.381 0.00 0.00 0.00 5.80
2350 2478 1.140312 ACTTTTCAGAGACAGGGGCA 58.860 50.000 0.00 0.00 0.00 5.36
2351 2479 1.494721 ACTTTTCAGAGACAGGGGCAA 59.505 47.619 0.00 0.00 0.00 4.52
2352 2480 2.157738 CTTTTCAGAGACAGGGGCAAG 58.842 52.381 0.00 0.00 0.00 4.01
2353 2481 0.250901 TTTCAGAGACAGGGGCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
2354 2482 2.045536 CAGAGACAGGGGCAAGCC 60.046 66.667 1.52 1.52 0.00 4.35
2355 2483 3.710722 AGAGACAGGGGCAAGCCG 61.711 66.667 4.80 0.00 36.85 5.52
2356 2484 3.706373 GAGACAGGGGCAAGCCGA 61.706 66.667 4.80 0.00 36.85 5.54
2357 2485 3.011517 AGACAGGGGCAAGCCGAT 61.012 61.111 4.80 0.00 36.85 4.18
2358 2486 1.686325 GAGACAGGGGCAAGCCGATA 61.686 60.000 4.80 0.00 36.85 2.92
2359 2487 1.223487 GACAGGGGCAAGCCGATAA 59.777 57.895 4.80 0.00 36.85 1.75
2360 2488 0.179018 GACAGGGGCAAGCCGATAAT 60.179 55.000 4.80 0.00 36.85 1.28
2361 2489 0.258774 ACAGGGGCAAGCCGATAATT 59.741 50.000 4.80 0.00 36.85 1.40
2362 2490 1.341976 ACAGGGGCAAGCCGATAATTT 60.342 47.619 4.80 0.00 36.85 1.82
2363 2491 1.067516 CAGGGGCAAGCCGATAATTTG 59.932 52.381 4.80 0.00 36.85 2.32
2364 2492 1.111277 GGGGCAAGCCGATAATTTGT 58.889 50.000 4.80 0.00 36.85 2.83
2365 2493 2.092103 AGGGGCAAGCCGATAATTTGTA 60.092 45.455 4.80 0.00 36.85 2.41
2366 2494 2.293399 GGGGCAAGCCGATAATTTGTAG 59.707 50.000 4.80 0.00 36.85 2.74
2367 2495 2.287608 GGGCAAGCCGATAATTTGTAGC 60.288 50.000 4.80 0.00 36.85 3.58
2368 2496 2.287608 GGCAAGCCGATAATTTGTAGCC 60.288 50.000 0.00 0.00 0.00 3.93
2369 2497 2.618709 GCAAGCCGATAATTTGTAGCCT 59.381 45.455 0.00 0.00 0.00 4.58
2370 2498 3.304057 GCAAGCCGATAATTTGTAGCCTC 60.304 47.826 0.00 0.00 0.00 4.70
2371 2499 3.127425 AGCCGATAATTTGTAGCCTCC 57.873 47.619 0.00 0.00 0.00 4.30
2372 2500 2.152016 GCCGATAATTTGTAGCCTCCC 58.848 52.381 0.00 0.00 0.00 4.30
2373 2501 2.224548 GCCGATAATTTGTAGCCTCCCT 60.225 50.000 0.00 0.00 0.00 4.20
2374 2502 3.403038 CCGATAATTTGTAGCCTCCCTG 58.597 50.000 0.00 0.00 0.00 4.45
2375 2503 3.403038 CGATAATTTGTAGCCTCCCTGG 58.597 50.000 0.00 0.00 39.35 4.45
2376 2504 3.181454 CGATAATTTGTAGCCTCCCTGGT 60.181 47.826 0.00 0.00 38.35 4.00
2377 2505 2.514458 AATTTGTAGCCTCCCTGGTG 57.486 50.000 0.00 0.00 38.35 4.17
2378 2506 0.625849 ATTTGTAGCCTCCCTGGTGG 59.374 55.000 0.00 0.00 38.35 4.61
2395 2523 7.655521 CCTGGTGGGAGTATATCGAATATAA 57.344 40.000 0.00 0.00 37.23 0.98
2396 2524 7.717568 CCTGGTGGGAGTATATCGAATATAAG 58.282 42.308 0.00 0.00 37.23 1.73
2397 2525 7.201920 CCTGGTGGGAGTATATCGAATATAAGG 60.202 44.444 0.00 0.00 37.23 2.69
2398 2526 6.097839 TGGTGGGAGTATATCGAATATAAGGC 59.902 42.308 0.00 0.00 30.07 4.35
2399 2527 6.324254 GGTGGGAGTATATCGAATATAAGGCT 59.676 42.308 0.00 0.00 30.07 4.58
2400 2528 7.203910 GTGGGAGTATATCGAATATAAGGCTG 58.796 42.308 0.00 0.00 30.07 4.85
2401 2529 6.183360 TGGGAGTATATCGAATATAAGGCTGC 60.183 42.308 0.00 0.00 30.07 5.25
2402 2530 6.217294 GGAGTATATCGAATATAAGGCTGCC 58.783 44.000 11.65 11.65 30.07 4.85
2403 2531 6.163135 AGTATATCGAATATAAGGCTGCCC 57.837 41.667 16.57 0.00 30.07 5.36
2404 2532 5.900123 AGTATATCGAATATAAGGCTGCCCT 59.100 40.000 16.57 4.69 45.77 5.19
2405 2533 3.618690 ATCGAATATAAGGCTGCCCTC 57.381 47.619 16.57 1.97 41.90 4.30
2406 2534 2.325484 TCGAATATAAGGCTGCCCTCA 58.675 47.619 16.57 0.30 41.90 3.86
2407 2535 2.300152 TCGAATATAAGGCTGCCCTCAG 59.700 50.000 16.57 0.00 41.90 3.35
2408 2536 2.613977 CGAATATAAGGCTGCCCTCAGG 60.614 54.545 16.57 0.00 41.90 3.86
2418 2546 4.344237 CCCTCAGGCAATCCCAAC 57.656 61.111 0.00 0.00 35.39 3.77
2419 2547 1.380380 CCCTCAGGCAATCCCAACC 60.380 63.158 0.00 0.00 35.39 3.77
2420 2548 1.380380 CCTCAGGCAATCCCAACCC 60.380 63.158 0.00 0.00 35.39 4.11
2421 2549 1.383799 CTCAGGCAATCCCAACCCA 59.616 57.895 0.00 0.00 35.39 4.51
2422 2550 0.032813 CTCAGGCAATCCCAACCCAT 60.033 55.000 0.00 0.00 35.39 4.00
2423 2551 1.215173 CTCAGGCAATCCCAACCCATA 59.785 52.381 0.00 0.00 35.39 2.74
2424 2552 1.643286 TCAGGCAATCCCAACCCATAA 59.357 47.619 0.00 0.00 35.39 1.90
2425 2553 2.247111 TCAGGCAATCCCAACCCATAAT 59.753 45.455 0.00 0.00 35.39 1.28
2426 2554 3.465210 TCAGGCAATCCCAACCCATAATA 59.535 43.478 0.00 0.00 35.39 0.98
2427 2555 4.078922 TCAGGCAATCCCAACCCATAATAA 60.079 41.667 0.00 0.00 35.39 1.40
2428 2556 4.281688 CAGGCAATCCCAACCCATAATAAG 59.718 45.833 0.00 0.00 35.39 1.73
2429 2557 4.169856 AGGCAATCCCAACCCATAATAAGA 59.830 41.667 0.00 0.00 35.39 2.10
2430 2558 4.280929 GGCAATCCCAACCCATAATAAGAC 59.719 45.833 0.00 0.00 0.00 3.01
2431 2559 5.140454 GCAATCCCAACCCATAATAAGACT 58.860 41.667 0.00 0.00 0.00 3.24
2432 2560 5.010012 GCAATCCCAACCCATAATAAGACTG 59.990 44.000 0.00 0.00 0.00 3.51
2433 2561 6.364701 CAATCCCAACCCATAATAAGACTGA 58.635 40.000 0.00 0.00 0.00 3.41
2434 2562 6.786843 ATCCCAACCCATAATAAGACTGAT 57.213 37.500 0.00 0.00 0.00 2.90
2435 2563 5.940617 TCCCAACCCATAATAAGACTGATG 58.059 41.667 0.00 0.00 0.00 3.07
2436 2564 5.669904 TCCCAACCCATAATAAGACTGATGA 59.330 40.000 0.00 0.00 0.00 2.92
2437 2565 6.159575 TCCCAACCCATAATAAGACTGATGAA 59.840 38.462 0.00 0.00 0.00 2.57
2438 2566 6.833416 CCCAACCCATAATAAGACTGATGAAA 59.167 38.462 0.00 0.00 0.00 2.69
2439 2567 7.013655 CCCAACCCATAATAAGACTGATGAAAG 59.986 40.741 0.00 0.00 0.00 2.62
2731 2859 3.777556 CAACAAAGGGGTGGGAGC 58.222 61.111 0.00 0.00 0.00 4.70
2732 2860 2.115266 AACAAAGGGGTGGGAGCG 59.885 61.111 0.00 0.00 0.00 5.03
2733 2861 2.457323 AACAAAGGGGTGGGAGCGA 61.457 57.895 0.00 0.00 0.00 4.93
2734 2862 1.789576 AACAAAGGGGTGGGAGCGAT 61.790 55.000 0.00 0.00 0.00 4.58
2735 2863 1.750399 CAAAGGGGTGGGAGCGATG 60.750 63.158 0.00 0.00 0.00 3.84
2736 2864 2.231380 AAAGGGGTGGGAGCGATGT 61.231 57.895 0.00 0.00 0.00 3.06
2737 2865 2.484287 AAAGGGGTGGGAGCGATGTG 62.484 60.000 0.00 0.00 0.00 3.21
2761 2889 3.364964 CGCCTTTAACTTCATTGTTCGCT 60.365 43.478 0.00 0.00 0.00 4.93
2762 2890 3.914364 GCCTTTAACTTCATTGTTCGCTG 59.086 43.478 0.00 0.00 0.00 5.18
2785 2913 7.452880 TGCTAATTGTGCTTTCTTGTATTCT 57.547 32.000 6.78 0.00 0.00 2.40
2856 2984 2.057137 AAAGGACAAGCAGCACAAGA 57.943 45.000 0.00 0.00 0.00 3.02
2892 3020 0.331616 TTAAAGAGAGGGGCTTGCCC 59.668 55.000 21.74 21.74 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.777297 AAAAACATTAGTAAACGGGAACTAGTA 57.223 29.630 0.00 0.00 30.27 1.82
1 2 8.681486 AAAAACATTAGTAAACGGGAACTAGT 57.319 30.769 0.00 0.00 30.27 2.57
26 27 8.439971 AGTGGCATATTAGGACAGAATGAATAA 58.560 33.333 0.00 0.00 39.69 1.40
27 28 7.977818 AGTGGCATATTAGGACAGAATGAATA 58.022 34.615 0.00 0.00 39.69 1.75
68 69 5.244402 TCTTAGTTTGAGACGTCCAATACCA 59.756 40.000 13.01 4.61 0.00 3.25
69 70 5.717119 TCTTAGTTTGAGACGTCCAATACC 58.283 41.667 13.01 7.49 0.00 2.73
70 71 7.331193 ACATTCTTAGTTTGAGACGTCCAATAC 59.669 37.037 13.01 14.79 0.00 1.89
71 72 7.330946 CACATTCTTAGTTTGAGACGTCCAATA 59.669 37.037 13.01 4.30 0.00 1.90
72 73 6.147821 CACATTCTTAGTTTGAGACGTCCAAT 59.852 38.462 13.01 5.22 0.00 3.16
73 74 5.465390 CACATTCTTAGTTTGAGACGTCCAA 59.535 40.000 13.01 13.21 0.00 3.53
132 133 2.592308 GGCTCTACCTTGGGCTGG 59.408 66.667 0.00 0.00 34.51 4.85
159 160 9.955208 CTGCAGCAATACAATATCAAAATCTAA 57.045 29.630 0.00 0.00 0.00 2.10
160 161 9.341078 TCTGCAGCAATACAATATCAAAATCTA 57.659 29.630 9.47 0.00 0.00 1.98
161 162 8.229253 TCTGCAGCAATACAATATCAAAATCT 57.771 30.769 9.47 0.00 0.00 2.40
162 163 7.594015 CCTCTGCAGCAATACAATATCAAAATC 59.406 37.037 9.47 0.00 0.00 2.17
163 164 7.431249 CCTCTGCAGCAATACAATATCAAAAT 58.569 34.615 9.47 0.00 0.00 1.82
164 165 6.681120 GCCTCTGCAGCAATACAATATCAAAA 60.681 38.462 9.47 0.00 37.47 2.44
165 166 5.221106 GCCTCTGCAGCAATACAATATCAAA 60.221 40.000 9.47 0.00 37.47 2.69
166 167 4.276678 GCCTCTGCAGCAATACAATATCAA 59.723 41.667 9.47 0.00 37.47 2.57
167 168 3.817084 GCCTCTGCAGCAATACAATATCA 59.183 43.478 9.47 0.00 37.47 2.15
168 169 3.190118 GGCCTCTGCAGCAATACAATATC 59.810 47.826 9.47 0.00 40.13 1.63
169 170 3.152341 GGCCTCTGCAGCAATACAATAT 58.848 45.455 9.47 0.00 40.13 1.28
174 175 2.182842 CCGGCCTCTGCAGCAATAC 61.183 63.158 9.47 0.00 40.13 1.89
208 291 4.956075 TCTAGAGTGGAAGATATGTGCACA 59.044 41.667 24.08 24.08 39.57 4.57
230 313 1.136872 CGAGCTAGCGTTGACTGCTC 61.137 60.000 9.55 0.00 42.85 4.26
244 327 1.845266 CATGCGTGTCTATTCGAGCT 58.155 50.000 0.00 0.00 0.00 4.09
376 459 1.419374 GTGCGCAGGGTATCTAATCG 58.581 55.000 12.22 0.00 0.00 3.34
473 557 5.542779 AGATTATGAATCGTAAGTGGAGCC 58.457 41.667 1.24 0.00 42.75 4.70
522 606 2.887152 AGTTGAATTGGCAAGTGGAGTC 59.113 45.455 4.31 0.00 30.59 3.36
523 607 2.949447 AGTTGAATTGGCAAGTGGAGT 58.051 42.857 4.31 0.00 30.59 3.85
561 645 3.841845 CCTTATTACATGGGGGACGGATA 59.158 47.826 0.00 0.00 0.00 2.59
627 711 3.723348 GCGACGGCAAAGTGGTCC 61.723 66.667 0.00 0.00 39.62 4.46
676 766 1.672881 CAGGCGGGCTGAATAAGAAAG 59.327 52.381 25.76 0.00 0.00 2.62
679 769 1.153168 GCAGGCGGGCTGAATAAGA 60.153 57.895 32.71 0.00 0.00 2.10
680 770 0.820891 ATGCAGGCGGGCTGAATAAG 60.821 55.000 32.71 7.83 34.04 1.73
940 1040 4.382320 TTACCGGTGGAGTGGCGC 62.382 66.667 19.93 0.00 0.00 6.53
1158 1262 1.064537 AGGGACGAGTAGAGTTCCTCC 60.065 57.143 0.00 0.00 44.02 4.30
1164 1268 1.355043 AGGAACAGGGACGAGTAGAGT 59.645 52.381 0.00 0.00 0.00 3.24
1386 1490 0.898320 TCTCCTCCTTGTAGCACAGC 59.102 55.000 0.00 0.00 0.00 4.40
1497 1601 5.045651 TCTGTGGATTTGTCAGTACCATGAT 60.046 40.000 0.00 0.00 33.19 2.45
1510 1614 2.421424 GCAGGTAAGCTCTGTGGATTTG 59.579 50.000 3.15 0.00 34.89 2.32
1517 1621 4.022849 GTGAAATTTGCAGGTAAGCTCTGT 60.023 41.667 0.00 0.00 34.89 3.41
1519 1623 4.401925 AGTGAAATTTGCAGGTAAGCTCT 58.598 39.130 0.00 0.00 34.99 4.09
1570 1674 4.767255 CCGGCCAGAGGTCAGCAC 62.767 72.222 2.24 0.00 0.00 4.40
1813 1936 1.944024 GTTGACGATGTTGGTGACCAA 59.056 47.619 14.05 14.05 41.69 3.67
1897 2020 1.682684 CGAGGACCTGGCAGTACCT 60.683 63.158 23.28 23.28 40.22 3.08
1968 2091 2.226962 AACGTGAGGCTACTCCCTTA 57.773 50.000 0.00 0.00 43.29 2.69
1969 2092 1.275573 GAAACGTGAGGCTACTCCCTT 59.724 52.381 0.00 0.00 43.29 3.95
1997 2120 3.589988 CACGTGAGGCTATGTTTTCTCT 58.410 45.455 10.90 0.00 0.00 3.10
2044 2172 6.038271 ACAAGTGTTTTTCTGTGTAGGCTTAG 59.962 38.462 0.00 0.00 0.00 2.18
2115 2243 4.059511 TGACCGTACGATCAATGTTGTTT 58.940 39.130 18.76 0.00 0.00 2.83
2118 2246 3.430556 TGTTGACCGTACGATCAATGTTG 59.569 43.478 26.91 4.62 37.19 3.33
2133 2261 3.730715 CGCTTCAATTTCACTTGTTGACC 59.269 43.478 0.00 0.00 32.26 4.02
2134 2262 4.597079 TCGCTTCAATTTCACTTGTTGAC 58.403 39.130 0.00 0.00 32.26 3.18
2155 2283 3.496130 CAGGATATTTGTCATCCGTGCTC 59.504 47.826 0.00 0.00 45.64 4.26
2162 2290 7.999679 TCAATTTGGTCAGGATATTTGTCATC 58.000 34.615 0.00 0.00 0.00 2.92
2179 2307 5.452078 TCTTGGTGTAGCTTTCAATTTGG 57.548 39.130 0.00 0.00 0.00 3.28
2216 2344 5.302568 TCCTAAACTTACTTCCGAAGACACA 59.697 40.000 15.23 0.00 0.00 3.72
2223 2351 7.486407 AACCTTATCCTAAACTTACTTCCGA 57.514 36.000 0.00 0.00 0.00 4.55
2224 2352 7.279536 GGAAACCTTATCCTAAACTTACTTCCG 59.720 40.741 0.00 0.00 33.98 4.30
2225 2353 7.279536 CGGAAACCTTATCCTAAACTTACTTCC 59.720 40.741 0.00 0.00 34.66 3.46
2226 2354 8.037166 TCGGAAACCTTATCCTAAACTTACTTC 58.963 37.037 0.00 0.00 34.66 3.01
2227 2355 7.910584 TCGGAAACCTTATCCTAAACTTACTT 58.089 34.615 0.00 0.00 34.66 2.24
2228 2356 7.486407 TCGGAAACCTTATCCTAAACTTACT 57.514 36.000 0.00 0.00 34.66 2.24
2229 2357 7.440556 GGATCGGAAACCTTATCCTAAACTTAC 59.559 40.741 0.00 0.00 33.59 2.34
2230 2358 7.503549 GGATCGGAAACCTTATCCTAAACTTA 58.496 38.462 0.00 0.00 33.59 2.24
2231 2359 6.354938 GGATCGGAAACCTTATCCTAAACTT 58.645 40.000 0.00 0.00 33.59 2.66
2232 2360 5.452917 CGGATCGGAAACCTTATCCTAAACT 60.453 44.000 13.30 0.00 33.95 2.66
2233 2361 4.748600 CGGATCGGAAACCTTATCCTAAAC 59.251 45.833 13.30 0.00 33.95 2.01
2234 2362 4.952460 CGGATCGGAAACCTTATCCTAAA 58.048 43.478 13.30 0.00 33.95 1.85
2235 2363 4.595762 CGGATCGGAAACCTTATCCTAA 57.404 45.455 13.30 0.00 33.95 2.69
2250 2378 0.037697 TCAGAACACCAACCGGATCG 60.038 55.000 9.46 0.00 35.59 3.69
2251 2379 2.403252 ATCAGAACACCAACCGGATC 57.597 50.000 9.46 0.00 35.59 3.36
2252 2380 4.503714 AATATCAGAACACCAACCGGAT 57.496 40.909 9.46 0.00 35.59 4.18
2253 2381 3.992943 AATATCAGAACACCAACCGGA 57.007 42.857 9.46 0.00 35.59 5.14
2254 2382 4.732784 CAAAATATCAGAACACCAACCGG 58.267 43.478 0.00 0.00 38.77 5.28
2255 2383 4.165779 GCAAAATATCAGAACACCAACCG 58.834 43.478 0.00 0.00 0.00 4.44
2256 2384 4.165779 CGCAAAATATCAGAACACCAACC 58.834 43.478 0.00 0.00 0.00 3.77
2257 2385 3.608073 GCGCAAAATATCAGAACACCAAC 59.392 43.478 0.30 0.00 0.00 3.77
2258 2386 3.505680 AGCGCAAAATATCAGAACACCAA 59.494 39.130 11.47 0.00 0.00 3.67
2259 2387 3.081061 AGCGCAAAATATCAGAACACCA 58.919 40.909 11.47 0.00 0.00 4.17
2260 2388 3.764885 AGCGCAAAATATCAGAACACC 57.235 42.857 11.47 0.00 0.00 4.16
2261 2389 5.153513 TGAAAGCGCAAAATATCAGAACAC 58.846 37.500 11.47 0.00 0.00 3.32
2262 2390 5.369685 TGAAAGCGCAAAATATCAGAACA 57.630 34.783 11.47 0.00 0.00 3.18
2263 2391 8.566008 AATATGAAAGCGCAAAATATCAGAAC 57.434 30.769 11.47 0.00 0.00 3.01
2264 2392 8.623903 AGAATATGAAAGCGCAAAATATCAGAA 58.376 29.630 11.47 0.00 0.00 3.02
2265 2393 8.158169 AGAATATGAAAGCGCAAAATATCAGA 57.842 30.769 11.47 1.99 0.00 3.27
2266 2394 9.539139 CTAGAATATGAAAGCGCAAAATATCAG 57.461 33.333 11.47 3.04 0.00 2.90
2267 2395 9.056005 ACTAGAATATGAAAGCGCAAAATATCA 57.944 29.630 11.47 4.68 0.00 2.15
2268 2396 9.884465 AACTAGAATATGAAAGCGCAAAATATC 57.116 29.630 11.47 0.00 0.00 1.63
2269 2397 9.884465 GAACTAGAATATGAAAGCGCAAAATAT 57.116 29.630 11.47 4.63 0.00 1.28
2270 2398 8.342634 GGAACTAGAATATGAAAGCGCAAAATA 58.657 33.333 11.47 2.12 0.00 1.40
2271 2399 7.067494 AGGAACTAGAATATGAAAGCGCAAAAT 59.933 33.333 11.47 0.00 36.02 1.82
2272 2400 6.374333 AGGAACTAGAATATGAAAGCGCAAAA 59.626 34.615 11.47 0.00 36.02 2.44
2273 2401 5.880332 AGGAACTAGAATATGAAAGCGCAAA 59.120 36.000 11.47 0.00 36.02 3.68
2274 2402 5.428253 AGGAACTAGAATATGAAAGCGCAA 58.572 37.500 11.47 0.00 36.02 4.85
2275 2403 5.023533 AGGAACTAGAATATGAAAGCGCA 57.976 39.130 11.47 0.00 36.02 6.09
2276 2404 5.050490 TGAGGAACTAGAATATGAAAGCGC 58.950 41.667 0.00 0.00 41.55 5.92
2277 2405 7.721286 AATGAGGAACTAGAATATGAAAGCG 57.279 36.000 0.00 0.00 41.55 4.68
2278 2406 9.113838 TCAAATGAGGAACTAGAATATGAAAGC 57.886 33.333 0.00 0.00 41.55 3.51
2280 2408 9.113838 GCTCAAATGAGGAACTAGAATATGAAA 57.886 33.333 12.09 0.00 41.55 2.69
2281 2409 7.439356 CGCTCAAATGAGGAACTAGAATATGAA 59.561 37.037 12.09 0.00 41.55 2.57
2282 2410 6.925718 CGCTCAAATGAGGAACTAGAATATGA 59.074 38.462 12.09 0.00 41.55 2.15
2283 2411 6.925718 TCGCTCAAATGAGGAACTAGAATATG 59.074 38.462 12.09 0.00 41.55 1.78
2284 2412 7.055667 TCGCTCAAATGAGGAACTAGAATAT 57.944 36.000 12.09 0.00 41.55 1.28
2285 2413 6.465439 TCGCTCAAATGAGGAACTAGAATA 57.535 37.500 12.09 0.00 41.55 1.75
2286 2414 5.344743 TCGCTCAAATGAGGAACTAGAAT 57.655 39.130 12.09 0.00 41.55 2.40
2287 2415 4.801330 TCGCTCAAATGAGGAACTAGAA 57.199 40.909 12.09 0.00 41.55 2.10
2288 2416 5.221263 GGTATCGCTCAAATGAGGAACTAGA 60.221 44.000 12.09 0.00 41.55 2.43
2289 2417 4.985409 GGTATCGCTCAAATGAGGAACTAG 59.015 45.833 12.09 0.00 41.55 2.57
2290 2418 4.202223 GGGTATCGCTCAAATGAGGAACTA 60.202 45.833 12.09 0.00 41.55 2.24
2292 2420 2.872858 GGGTATCGCTCAAATGAGGAAC 59.127 50.000 12.09 8.27 42.29 3.62
2293 2421 2.503765 TGGGTATCGCTCAAATGAGGAA 59.496 45.455 12.09 0.00 42.29 3.36
2294 2422 2.115427 TGGGTATCGCTCAAATGAGGA 58.885 47.619 12.09 8.00 42.29 3.71
2295 2423 2.158900 AGTGGGTATCGCTCAAATGAGG 60.159 50.000 12.09 3.14 42.29 3.86
2296 2424 3.185246 AGTGGGTATCGCTCAAATGAG 57.815 47.619 6.05 6.05 44.75 2.90
2297 2425 3.270027 CAAGTGGGTATCGCTCAAATGA 58.730 45.455 0.00 0.00 34.68 2.57
2298 2426 2.355756 CCAAGTGGGTATCGCTCAAATG 59.644 50.000 0.00 0.00 34.68 2.32
2299 2427 2.238646 TCCAAGTGGGTATCGCTCAAAT 59.761 45.455 0.00 0.00 38.11 2.32
2300 2428 1.626321 TCCAAGTGGGTATCGCTCAAA 59.374 47.619 0.00 0.00 38.11 2.69
2301 2429 1.207089 CTCCAAGTGGGTATCGCTCAA 59.793 52.381 0.00 0.00 38.11 3.02
2302 2430 0.824109 CTCCAAGTGGGTATCGCTCA 59.176 55.000 0.00 0.00 38.11 4.26
2303 2431 0.530870 GCTCCAAGTGGGTATCGCTC 60.531 60.000 0.00 0.00 38.11 5.03
2304 2432 0.978146 AGCTCCAAGTGGGTATCGCT 60.978 55.000 0.00 0.00 38.11 4.93
2305 2433 0.811616 CAGCTCCAAGTGGGTATCGC 60.812 60.000 0.00 0.00 38.11 4.58
2306 2434 0.824109 TCAGCTCCAAGTGGGTATCG 59.176 55.000 0.00 0.00 38.11 2.92
2307 2435 1.134371 GGTCAGCTCCAAGTGGGTATC 60.134 57.143 0.00 0.00 38.11 2.24
2308 2436 0.912486 GGTCAGCTCCAAGTGGGTAT 59.088 55.000 0.00 0.00 38.11 2.73
2309 2437 0.178903 AGGTCAGCTCCAAGTGGGTA 60.179 55.000 0.00 0.00 38.11 3.69
2310 2438 1.062488 AAGGTCAGCTCCAAGTGGGT 61.062 55.000 0.00 0.00 38.11 4.51
2311 2439 0.322008 GAAGGTCAGCTCCAAGTGGG 60.322 60.000 0.00 0.00 35.41 4.61
2312 2440 0.397941 TGAAGGTCAGCTCCAAGTGG 59.602 55.000 0.00 0.00 0.00 4.00
2313 2441 1.071385 AGTGAAGGTCAGCTCCAAGTG 59.929 52.381 0.00 0.00 0.00 3.16
2314 2442 1.428869 AGTGAAGGTCAGCTCCAAGT 58.571 50.000 0.00 0.00 0.00 3.16
2315 2443 2.557920 AAGTGAAGGTCAGCTCCAAG 57.442 50.000 0.00 0.00 0.00 3.61
2316 2444 3.214328 GAAAAGTGAAGGTCAGCTCCAA 58.786 45.455 0.00 0.00 0.00 3.53
2317 2445 2.172505 TGAAAAGTGAAGGTCAGCTCCA 59.827 45.455 0.00 0.00 0.00 3.86
2318 2446 2.810852 CTGAAAAGTGAAGGTCAGCTCC 59.189 50.000 0.00 0.00 31.80 4.70
2319 2447 3.733337 TCTGAAAAGTGAAGGTCAGCTC 58.267 45.455 0.00 0.00 37.90 4.09
2320 2448 3.389329 TCTCTGAAAAGTGAAGGTCAGCT 59.611 43.478 0.00 0.00 37.90 4.24
2321 2449 3.496507 GTCTCTGAAAAGTGAAGGTCAGC 59.503 47.826 0.00 0.00 37.90 4.26
2322 2450 4.697514 TGTCTCTGAAAAGTGAAGGTCAG 58.302 43.478 0.00 0.00 39.09 3.51
2323 2451 4.443457 CCTGTCTCTGAAAAGTGAAGGTCA 60.443 45.833 0.00 0.00 0.00 4.02
2324 2452 4.061596 CCTGTCTCTGAAAAGTGAAGGTC 58.938 47.826 0.00 0.00 0.00 3.85
2325 2453 3.181450 CCCTGTCTCTGAAAAGTGAAGGT 60.181 47.826 0.00 0.00 0.00 3.50
2326 2454 3.406764 CCCTGTCTCTGAAAAGTGAAGG 58.593 50.000 0.00 0.00 0.00 3.46
2327 2455 3.406764 CCCCTGTCTCTGAAAAGTGAAG 58.593 50.000 0.00 0.00 0.00 3.02
2328 2456 2.487265 GCCCCTGTCTCTGAAAAGTGAA 60.487 50.000 0.00 0.00 0.00 3.18
2329 2457 1.072331 GCCCCTGTCTCTGAAAAGTGA 59.928 52.381 0.00 0.00 0.00 3.41
2330 2458 1.202806 TGCCCCTGTCTCTGAAAAGTG 60.203 52.381 0.00 0.00 0.00 3.16
2331 2459 1.140312 TGCCCCTGTCTCTGAAAAGT 58.860 50.000 0.00 0.00 0.00 2.66
2332 2460 2.157738 CTTGCCCCTGTCTCTGAAAAG 58.842 52.381 0.00 0.00 0.00 2.27
2333 2461 1.819305 GCTTGCCCCTGTCTCTGAAAA 60.819 52.381 0.00 0.00 0.00 2.29
2334 2462 0.250901 GCTTGCCCCTGTCTCTGAAA 60.251 55.000 0.00 0.00 0.00 2.69
2335 2463 1.376466 GCTTGCCCCTGTCTCTGAA 59.624 57.895 0.00 0.00 0.00 3.02
2336 2464 2.596851 GGCTTGCCCCTGTCTCTGA 61.597 63.158 0.00 0.00 0.00 3.27
2337 2465 2.045536 GGCTTGCCCCTGTCTCTG 60.046 66.667 0.00 0.00 0.00 3.35
2338 2466 3.710722 CGGCTTGCCCCTGTCTCT 61.711 66.667 6.02 0.00 0.00 3.10
2339 2467 1.686325 TATCGGCTTGCCCCTGTCTC 61.686 60.000 6.02 0.00 0.00 3.36
2340 2468 1.271840 TTATCGGCTTGCCCCTGTCT 61.272 55.000 6.02 0.00 0.00 3.41
2341 2469 0.179018 ATTATCGGCTTGCCCCTGTC 60.179 55.000 6.02 0.00 0.00 3.51
2342 2470 0.258774 AATTATCGGCTTGCCCCTGT 59.741 50.000 6.02 0.00 0.00 4.00
2343 2471 1.067516 CAAATTATCGGCTTGCCCCTG 59.932 52.381 6.02 0.00 0.00 4.45
2344 2472 1.341976 ACAAATTATCGGCTTGCCCCT 60.342 47.619 6.02 0.00 0.00 4.79
2345 2473 1.111277 ACAAATTATCGGCTTGCCCC 58.889 50.000 6.02 0.00 0.00 5.80
2346 2474 2.287608 GCTACAAATTATCGGCTTGCCC 60.288 50.000 6.02 0.00 0.00 5.36
2347 2475 2.287608 GGCTACAAATTATCGGCTTGCC 60.288 50.000 0.75 0.75 0.00 4.52
2348 2476 2.618709 AGGCTACAAATTATCGGCTTGC 59.381 45.455 0.00 0.00 0.00 4.01
2349 2477 3.251004 GGAGGCTACAAATTATCGGCTTG 59.749 47.826 0.00 0.00 0.00 4.01
2350 2478 3.477530 GGAGGCTACAAATTATCGGCTT 58.522 45.455 0.00 0.00 0.00 4.35
2351 2479 2.224548 GGGAGGCTACAAATTATCGGCT 60.225 50.000 0.00 0.00 0.00 5.52
2352 2480 2.152016 GGGAGGCTACAAATTATCGGC 58.848 52.381 0.00 0.00 0.00 5.54
2353 2481 3.403038 CAGGGAGGCTACAAATTATCGG 58.597 50.000 0.00 0.00 0.00 4.18
2354 2482 3.181454 ACCAGGGAGGCTACAAATTATCG 60.181 47.826 0.00 0.00 43.14 2.92
2355 2483 4.137543 CACCAGGGAGGCTACAAATTATC 58.862 47.826 0.00 0.00 43.14 1.75
2356 2484 3.117512 CCACCAGGGAGGCTACAAATTAT 60.118 47.826 0.00 0.00 43.14 1.28
2357 2485 2.241176 CCACCAGGGAGGCTACAAATTA 59.759 50.000 0.00 0.00 43.14 1.40
2358 2486 1.005924 CCACCAGGGAGGCTACAAATT 59.994 52.381 0.00 0.00 43.14 1.82
2359 2487 0.625849 CCACCAGGGAGGCTACAAAT 59.374 55.000 0.00 0.00 43.14 2.32
2360 2488 2.074967 CCACCAGGGAGGCTACAAA 58.925 57.895 0.00 0.00 43.14 2.83
2361 2489 3.820425 CCACCAGGGAGGCTACAA 58.180 61.111 0.00 0.00 43.14 2.41
2371 2499 7.201920 CCTTATATTCGATATACTCCCACCAGG 60.202 44.444 0.00 0.00 0.00 4.45
2372 2500 7.684670 GCCTTATATTCGATATACTCCCACCAG 60.685 44.444 0.00 0.00 0.00 4.00
2373 2501 6.097839 GCCTTATATTCGATATACTCCCACCA 59.902 42.308 0.00 0.00 0.00 4.17
2374 2502 6.324254 AGCCTTATATTCGATATACTCCCACC 59.676 42.308 0.00 0.00 0.00 4.61
2375 2503 7.203910 CAGCCTTATATTCGATATACTCCCAC 58.796 42.308 0.00 0.00 0.00 4.61
2376 2504 6.183360 GCAGCCTTATATTCGATATACTCCCA 60.183 42.308 0.00 0.00 0.00 4.37
2377 2505 6.217294 GCAGCCTTATATTCGATATACTCCC 58.783 44.000 0.00 0.00 0.00 4.30
2378 2506 6.217294 GGCAGCCTTATATTCGATATACTCC 58.783 44.000 3.29 0.00 0.00 3.85
2379 2507 6.041069 AGGGCAGCCTTATATTCGATATACTC 59.959 42.308 12.43 0.00 0.00 2.59
2380 2508 5.900123 AGGGCAGCCTTATATTCGATATACT 59.100 40.000 12.43 0.00 0.00 2.12
2381 2509 6.163135 AGGGCAGCCTTATATTCGATATAC 57.837 41.667 12.43 0.00 0.00 1.47
2382 2510 5.897250 TGAGGGCAGCCTTATATTCGATATA 59.103 40.000 12.43 0.00 0.00 0.86
2383 2511 4.716784 TGAGGGCAGCCTTATATTCGATAT 59.283 41.667 12.43 0.00 0.00 1.63
2384 2512 4.093743 TGAGGGCAGCCTTATATTCGATA 58.906 43.478 12.43 0.00 0.00 2.92
2385 2513 2.906389 TGAGGGCAGCCTTATATTCGAT 59.094 45.455 12.43 0.00 0.00 3.59
2386 2514 2.300152 CTGAGGGCAGCCTTATATTCGA 59.700 50.000 12.43 0.00 34.95 3.71
2387 2515 2.613977 CCTGAGGGCAGCCTTATATTCG 60.614 54.545 12.43 0.00 40.91 3.34
2388 2516 3.064900 CCTGAGGGCAGCCTTATATTC 57.935 52.381 12.43 0.92 40.91 1.75
2401 2529 1.380380 GGTTGGGATTGCCTGAGGG 60.380 63.158 0.00 0.00 0.00 4.30
2402 2530 1.380380 GGGTTGGGATTGCCTGAGG 60.380 63.158 0.00 0.00 0.00 3.86
2403 2531 0.032813 ATGGGTTGGGATTGCCTGAG 60.033 55.000 0.00 0.00 0.00 3.35
2404 2532 1.303898 TATGGGTTGGGATTGCCTGA 58.696 50.000 0.00 0.00 0.00 3.86
2405 2533 2.157640 TTATGGGTTGGGATTGCCTG 57.842 50.000 0.00 0.00 0.00 4.85
2406 2534 4.169856 TCTTATTATGGGTTGGGATTGCCT 59.830 41.667 0.00 0.00 0.00 4.75
2407 2535 4.280929 GTCTTATTATGGGTTGGGATTGCC 59.719 45.833 0.00 0.00 0.00 4.52
2408 2536 5.010012 CAGTCTTATTATGGGTTGGGATTGC 59.990 44.000 0.00 0.00 0.00 3.56
2409 2537 6.364701 TCAGTCTTATTATGGGTTGGGATTG 58.635 40.000 0.00 0.00 0.00 2.67
2410 2538 6.590656 TCAGTCTTATTATGGGTTGGGATT 57.409 37.500 0.00 0.00 0.00 3.01
2411 2539 6.332635 TCATCAGTCTTATTATGGGTTGGGAT 59.667 38.462 0.00 0.00 0.00 3.85
2412 2540 5.669904 TCATCAGTCTTATTATGGGTTGGGA 59.330 40.000 0.00 0.00 0.00 4.37
2413 2541 5.940617 TCATCAGTCTTATTATGGGTTGGG 58.059 41.667 0.00 0.00 0.00 4.12
2414 2542 7.880160 TTTCATCAGTCTTATTATGGGTTGG 57.120 36.000 0.00 0.00 0.00 3.77
2714 2842 2.268076 CGCTCCCACCCCTTTGTTG 61.268 63.158 0.00 0.00 0.00 3.33
2715 2843 1.789576 ATCGCTCCCACCCCTTTGTT 61.790 55.000 0.00 0.00 0.00 2.83
2716 2844 2.231380 ATCGCTCCCACCCCTTTGT 61.231 57.895 0.00 0.00 0.00 2.83
2717 2845 1.750399 CATCGCTCCCACCCCTTTG 60.750 63.158 0.00 0.00 0.00 2.77
2718 2846 2.231380 ACATCGCTCCCACCCCTTT 61.231 57.895 0.00 0.00 0.00 3.11
2719 2847 2.610859 ACATCGCTCCCACCCCTT 60.611 61.111 0.00 0.00 0.00 3.95
2720 2848 3.402681 CACATCGCTCCCACCCCT 61.403 66.667 0.00 0.00 0.00 4.79
2731 2859 0.802494 AAGTTAAAGGCGGCACATCG 59.198 50.000 13.08 0.00 0.00 3.84
2732 2860 1.810151 TGAAGTTAAAGGCGGCACATC 59.190 47.619 13.08 3.49 0.00 3.06
2733 2861 1.904287 TGAAGTTAAAGGCGGCACAT 58.096 45.000 13.08 0.00 0.00 3.21
2734 2862 1.904287 ATGAAGTTAAAGGCGGCACA 58.096 45.000 13.08 0.00 0.00 4.57
2735 2863 2.030274 ACAATGAAGTTAAAGGCGGCAC 60.030 45.455 13.08 0.00 0.00 5.01
2736 2864 2.235016 ACAATGAAGTTAAAGGCGGCA 58.765 42.857 13.08 0.00 0.00 5.69
2737 2865 3.242518 GAACAATGAAGTTAAAGGCGGC 58.757 45.455 0.00 0.00 0.00 6.53
2738 2866 3.488489 CGAACAATGAAGTTAAAGGCGG 58.512 45.455 0.00 0.00 0.00 6.13
2739 2867 2.908626 GCGAACAATGAAGTTAAAGGCG 59.091 45.455 0.00 0.00 0.00 5.52
2740 2868 3.914364 CAGCGAACAATGAAGTTAAAGGC 59.086 43.478 0.00 0.00 0.00 4.35
2741 2869 3.914364 GCAGCGAACAATGAAGTTAAAGG 59.086 43.478 0.00 0.00 0.00 3.11
2742 2870 4.787598 AGCAGCGAACAATGAAGTTAAAG 58.212 39.130 0.00 0.00 0.00 1.85
2743 2871 4.829064 AGCAGCGAACAATGAAGTTAAA 57.171 36.364 0.00 0.00 0.00 1.52
2744 2872 5.933187 TTAGCAGCGAACAATGAAGTTAA 57.067 34.783 0.00 0.00 0.00 2.01
2745 2873 6.072728 ACAATTAGCAGCGAACAATGAAGTTA 60.073 34.615 0.00 0.00 0.00 2.24
2761 2889 7.452880 AGAATACAAGAAAGCACAATTAGCA 57.547 32.000 5.04 0.00 0.00 3.49
2801 2929 4.036498 TCGAATACTTCCCGCAAAAACAAA 59.964 37.500 0.00 0.00 0.00 2.83
2802 2930 3.564644 TCGAATACTTCCCGCAAAAACAA 59.435 39.130 0.00 0.00 0.00 2.83
2803 2931 3.139850 TCGAATACTTCCCGCAAAAACA 58.860 40.909 0.00 0.00 0.00 2.83
2804 2932 3.817148 TCGAATACTTCCCGCAAAAAC 57.183 42.857 0.00 0.00 0.00 2.43
2805 2933 6.316640 TCATTATCGAATACTTCCCGCAAAAA 59.683 34.615 0.00 0.00 0.00 1.94
2806 2934 5.818336 TCATTATCGAATACTTCCCGCAAAA 59.182 36.000 0.00 0.00 0.00 2.44
2807 2935 5.361427 TCATTATCGAATACTTCCCGCAAA 58.639 37.500 0.00 0.00 0.00 3.68
2808 2936 4.951254 TCATTATCGAATACTTCCCGCAA 58.049 39.130 0.00 0.00 0.00 4.85
2809 2937 4.594123 TCATTATCGAATACTTCCCGCA 57.406 40.909 0.00 0.00 0.00 5.69
2810 2938 5.917541 TTTCATTATCGAATACTTCCCGC 57.082 39.130 0.00 0.00 0.00 6.13
2811 2939 7.861630 ACAATTTCATTATCGAATACTTCCCG 58.138 34.615 0.00 0.00 0.00 5.14
2838 2966 1.312815 GTCTTGTGCTGCTTGTCCTT 58.687 50.000 0.00 0.00 0.00 3.36
2848 2976 1.115930 AGGTGACTCCGTCTTGTGCT 61.116 55.000 0.00 0.00 41.99 4.40
2850 2978 2.240493 AAAGGTGACTCCGTCTTGTG 57.760 50.000 0.00 0.00 42.68 3.33
2892 3020 0.394352 AGGGCCTGACTTTATTGCCG 60.394 55.000 4.50 0.00 43.09 5.69
2902 3030 3.418684 TTTGTAAGAGAAGGGCCTGAC 57.581 47.619 6.92 4.61 0.00 3.51
2904 3032 4.398319 TCTTTTTGTAAGAGAAGGGCCTG 58.602 43.478 6.92 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.