Multiple sequence alignment - TraesCS3B01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G156700 chr3B 100.000 3166 0 0 1 3166 149462053 149465218 0.000000e+00 5847
1 TraesCS3B01G156700 chr3D 93.756 1089 47 10 1316 2389 98883090 98884172 0.000000e+00 1615
2 TraesCS3B01G156700 chr3D 95.498 311 5 4 2859 3166 98886664 98886968 3.670000e-134 488
3 TraesCS3B01G156700 chr3D 89.231 390 36 2 1 384 98881994 98882383 1.710000e-132 483
4 TraesCS3B01G156700 chr3D 94.964 278 7 3 2551 2823 98886397 98886672 2.260000e-116 429
5 TraesCS3B01G156700 chr3D 82.111 341 23 16 730 1058 98882774 98883088 1.130000e-64 257
6 TraesCS3B01G156700 chr3A 83.501 897 73 43 2293 3166 116527237 116528081 0.000000e+00 767
7 TraesCS3B01G156700 chr3A 83.374 818 84 21 728 1515 116525472 116526267 0.000000e+00 710
8 TraesCS3B01G156700 chr3A 92.929 297 16 2 1514 1806 116526297 116526592 8.120000e-116 427
9 TraesCS3B01G156700 chr3A 89.503 181 16 3 1939 2118 116526816 116526994 3.180000e-55 226
10 TraesCS3B01G156700 chr3A 93.478 92 6 0 1804 1895 116526635 116526726 1.530000e-28 137
11 TraesCS3B01G156700 chr7D 85.408 233 30 4 1215 1445 629824291 629824521 4.080000e-59 239
12 TraesCS3B01G156700 chr7B 85.408 233 30 4 1215 1445 732644808 732645038 4.080000e-59 239
13 TraesCS3B01G156700 chr7B 88.372 172 20 0 14 185 304113168 304113339 1.150000e-49 207
14 TraesCS3B01G156700 chr7B 89.091 165 17 1 21 185 428829372 428829535 1.490000e-48 204
15 TraesCS3B01G156700 chr7B 88.889 162 18 0 24 185 682239792 682239953 1.930000e-47 200
16 TraesCS3B01G156700 chr7A 85.281 231 34 0 1215 1445 725912687 725912917 4.080000e-59 239
17 TraesCS3B01G156700 chr5A 83.550 231 38 0 1215 1445 547719977 547720207 1.910000e-52 217
18 TraesCS3B01G156700 chr1B 90.123 162 15 1 24 185 314565699 314565539 3.200000e-50 209
19 TraesCS3B01G156700 chr1B 87.006 177 19 3 23 197 507308990 507309164 2.490000e-46 196
20 TraesCS3B01G156700 chr2B 90.062 161 13 3 24 183 504473342 504473184 4.140000e-49 206
21 TraesCS3B01G156700 chr5B 87.079 178 20 3 21 196 318403048 318403224 6.930000e-47 198
22 TraesCS3B01G156700 chr5D 86.517 178 22 2 20 196 280785759 280785935 8.960000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G156700 chr3B 149462053 149465218 3165 False 5847.0 5847 100.000 1 3166 1 chr3B.!!$F1 3165
1 TraesCS3B01G156700 chr3D 98881994 98886968 4974 False 654.4 1615 91.112 1 3166 5 chr3D.!!$F1 3165
2 TraesCS3B01G156700 chr3A 116525472 116528081 2609 False 453.4 767 88.557 728 3166 5 chr3A.!!$F1 2438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 1067 0.248539 GAGAAGTAGGGTAGTGCGCG 60.249 60.0 0.0 0.0 34.93 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2865 5284 0.17902 TGCCCTTGTCAGTTCAGTGG 60.179 55.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.710375 TGTGACATCTAAAGTACTCCCTCC 59.290 45.833 0.00 0.00 0.00 4.30
33 34 4.710375 GTGACATCTAAAGTACTCCCTCCA 59.290 45.833 0.00 0.00 0.00 3.86
37 38 7.037586 TGACATCTAAAGTACTCCCTCCATTTT 60.038 37.037 0.00 0.00 0.00 1.82
81 82 8.865090 AGAGATTTCAATACAGACTACATAGGG 58.135 37.037 0.00 0.00 0.00 3.53
82 83 8.783660 AGATTTCAATACAGACTACATAGGGA 57.216 34.615 0.00 0.00 0.00 4.20
127 134 9.167311 AGTGTGTAGATTCACTCATTTTAATCC 57.833 33.333 0.00 0.00 40.28 3.01
128 135 8.946085 GTGTGTAGATTCACTCATTTTAATCCA 58.054 33.333 0.00 0.00 38.90 3.41
135 142 9.970395 GATTCACTCATTTTAATCCATATGCAA 57.030 29.630 0.00 0.00 0.00 4.08
139 146 7.539710 CACTCATTTTAATCCATATGCAATCCG 59.460 37.037 0.00 0.00 0.00 4.18
144 151 9.859427 ATTTTAATCCATATGCAATCCGTATTG 57.141 29.630 0.00 0.00 44.53 1.90
187 194 1.772836 TAGGAACGGAGGGAGTAAGC 58.227 55.000 0.00 0.00 0.00 3.09
257 264 5.296748 GTTTTGCCCACACATATTGAAGTT 58.703 37.500 0.00 0.00 0.00 2.66
259 266 2.230992 TGCCCACACATATTGAAGTTGC 59.769 45.455 0.00 0.00 0.00 4.17
353 360 6.934083 CCAAAATTTGGTGCCTAAAGTTACAT 59.066 34.615 16.24 0.00 45.93 2.29
421 428 9.869844 TTTTTGTTTTGTTTCAGTGTACATTTG 57.130 25.926 0.00 1.12 0.00 2.32
422 429 8.818141 TTTGTTTTGTTTCAGTGTACATTTGA 57.182 26.923 0.00 3.80 0.00 2.69
423 430 8.818141 TTGTTTTGTTTCAGTGTACATTTGAA 57.182 26.923 17.03 17.03 0.00 2.69
424 431 8.994429 TGTTTTGTTTCAGTGTACATTTGAAT 57.006 26.923 19.93 0.00 31.54 2.57
425 432 9.081997 TGTTTTGTTTCAGTGTACATTTGAATC 57.918 29.630 19.93 18.94 31.54 2.52
427 434 9.515020 TTTTGTTTCAGTGTACATTTGAATCTC 57.485 29.630 19.93 15.20 31.54 2.75
428 435 7.202016 TGTTTCAGTGTACATTTGAATCTCC 57.798 36.000 19.93 12.22 31.54 3.71
429 436 6.770303 TGTTTCAGTGTACATTTGAATCTCCA 59.230 34.615 19.93 13.81 31.54 3.86
430 437 7.448161 TGTTTCAGTGTACATTTGAATCTCCAT 59.552 33.333 19.93 0.00 31.54 3.41
431 438 6.990341 TCAGTGTACATTTGAATCTCCATG 57.010 37.500 0.00 0.00 0.00 3.66
433 440 7.619965 TCAGTGTACATTTGAATCTCCATGTA 58.380 34.615 0.00 0.00 32.15 2.29
434 441 7.549134 TCAGTGTACATTTGAATCTCCATGTAC 59.451 37.037 16.35 16.35 46.56 2.90
446 546 5.955961 TCTCCATGTACAAATGATCAGGA 57.044 39.130 0.00 0.00 0.00 3.86
464 564 7.760794 TGATCAGGATTTTAACAATTGATGCAC 59.239 33.333 13.59 0.00 0.00 4.57
468 568 7.388500 CAGGATTTTAACAATTGATGCACCTTT 59.612 33.333 13.59 0.00 0.00 3.11
488 588 5.696724 CCTTTGTCAGACAATAGTTCGTCTT 59.303 40.000 16.89 0.00 40.50 3.01
490 590 4.806330 TGTCAGACAATAGTTCGTCTTCC 58.194 43.478 0.00 0.00 40.50 3.46
491 591 4.279922 TGTCAGACAATAGTTCGTCTTCCA 59.720 41.667 0.00 0.00 40.50 3.53
499 599 6.878923 ACAATAGTTCGTCTTCCATTCATGAA 59.121 34.615 11.26 11.26 0.00 2.57
511 611 4.892345 TCCATTCATGAACAAACCAACAGA 59.108 37.500 11.07 0.00 0.00 3.41
519 619 4.081752 TGAACAAACCAACAGATGCAAACT 60.082 37.500 0.00 0.00 0.00 2.66
520 620 4.470334 ACAAACCAACAGATGCAAACTT 57.530 36.364 0.00 0.00 0.00 2.66
562 662 2.174210 AGGATGGTACAAGCATGCAGAT 59.826 45.455 21.98 6.65 45.12 2.90
563 663 3.746751 AGGATGGTACAAGCATGCAGATC 60.747 47.826 21.98 10.11 45.12 2.75
564 664 2.042686 TGGTACAAGCATGCAGATCC 57.957 50.000 21.98 17.53 31.92 3.36
565 665 1.281577 TGGTACAAGCATGCAGATCCA 59.718 47.619 21.98 19.53 31.92 3.41
566 666 2.092267 TGGTACAAGCATGCAGATCCAT 60.092 45.455 21.98 0.00 31.92 3.41
567 667 2.954318 GGTACAAGCATGCAGATCCATT 59.046 45.455 21.98 0.00 0.00 3.16
568 668 3.382546 GGTACAAGCATGCAGATCCATTT 59.617 43.478 21.98 0.00 0.00 2.32
569 669 4.142093 GGTACAAGCATGCAGATCCATTTT 60.142 41.667 21.98 0.00 0.00 1.82
570 670 5.067674 GGTACAAGCATGCAGATCCATTTTA 59.932 40.000 21.98 0.00 0.00 1.52
571 671 5.258456 ACAAGCATGCAGATCCATTTTAG 57.742 39.130 21.98 0.33 0.00 1.85
572 672 4.708421 ACAAGCATGCAGATCCATTTTAGT 59.292 37.500 21.98 0.91 0.00 2.24
573 673 5.186409 ACAAGCATGCAGATCCATTTTAGTT 59.814 36.000 21.98 0.00 0.00 2.24
574 674 5.927281 AGCATGCAGATCCATTTTAGTTT 57.073 34.783 21.98 0.00 0.00 2.66
575 675 6.290294 AGCATGCAGATCCATTTTAGTTTT 57.710 33.333 21.98 0.00 0.00 2.43
576 676 6.103997 AGCATGCAGATCCATTTTAGTTTTG 58.896 36.000 21.98 0.00 0.00 2.44
577 677 6.071221 AGCATGCAGATCCATTTTAGTTTTGA 60.071 34.615 21.98 0.00 0.00 2.69
578 678 6.591062 GCATGCAGATCCATTTTAGTTTTGAA 59.409 34.615 14.21 0.00 0.00 2.69
579 679 7.201496 GCATGCAGATCCATTTTAGTTTTGAAG 60.201 37.037 14.21 0.00 0.00 3.02
580 680 7.523293 TGCAGATCCATTTTAGTTTTGAAGA 57.477 32.000 0.00 0.00 0.00 2.87
581 681 7.370383 TGCAGATCCATTTTAGTTTTGAAGAC 58.630 34.615 0.00 0.00 0.00 3.01
582 682 7.231317 TGCAGATCCATTTTAGTTTTGAAGACT 59.769 33.333 0.00 0.00 0.00 3.24
583 683 8.730680 GCAGATCCATTTTAGTTTTGAAGACTA 58.269 33.333 0.00 0.00 0.00 2.59
668 777 2.890311 TGGATTCAGTTTGGCGTGAAAT 59.110 40.909 0.00 0.00 36.31 2.17
669 778 4.075682 TGGATTCAGTTTGGCGTGAAATA 58.924 39.130 0.00 0.00 36.31 1.40
691 800 1.618837 TGTGCCAAGACTAGACAGACC 59.381 52.381 0.00 0.00 0.00 3.85
700 809 7.168905 CCAAGACTAGACAGACCCTAATTTTT 58.831 38.462 0.00 0.00 0.00 1.94
701 810 8.319146 CCAAGACTAGACAGACCCTAATTTTTA 58.681 37.037 0.00 0.00 0.00 1.52
702 811 9.892130 CAAGACTAGACAGACCCTAATTTTTAT 57.108 33.333 0.00 0.00 0.00 1.40
704 813 9.268282 AGACTAGACAGACCCTAATTTTTATCA 57.732 33.333 0.00 0.00 0.00 2.15
706 815 9.838339 ACTAGACAGACCCTAATTTTTATCATG 57.162 33.333 0.00 0.00 0.00 3.07
707 816 9.838339 CTAGACAGACCCTAATTTTTATCATGT 57.162 33.333 0.00 0.00 0.00 3.21
709 818 9.533831 AGACAGACCCTAATTTTTATCATGTTT 57.466 29.630 0.00 0.00 0.00 2.83
766 875 3.129113 GGTGGTTGAGTTGGTTACGTTTT 59.871 43.478 0.00 0.00 0.00 2.43
767 876 4.380761 GGTGGTTGAGTTGGTTACGTTTTT 60.381 41.667 0.00 0.00 0.00 1.94
768 877 4.559643 GTGGTTGAGTTGGTTACGTTTTTG 59.440 41.667 0.00 0.00 0.00 2.44
769 878 4.106909 GGTTGAGTTGGTTACGTTTTTGG 58.893 43.478 0.00 0.00 0.00 3.28
770 879 3.423996 TGAGTTGGTTACGTTTTTGGC 57.576 42.857 0.00 0.00 0.00 4.52
771 880 3.018149 TGAGTTGGTTACGTTTTTGGCT 58.982 40.909 0.00 0.00 0.00 4.75
772 881 3.444388 TGAGTTGGTTACGTTTTTGGCTT 59.556 39.130 0.00 0.00 0.00 4.35
773 882 4.082136 TGAGTTGGTTACGTTTTTGGCTTT 60.082 37.500 0.00 0.00 0.00 3.51
823 933 3.788227 AAGCCACATCCAGTCAAGTAA 57.212 42.857 0.00 0.00 0.00 2.24
854 965 9.442047 GGTAATCAGTCCAAGAAGAATATATGG 57.558 37.037 0.00 0.00 0.00 2.74
858 969 7.509546 TCAGTCCAAGAAGAATATATGGTTCC 58.490 38.462 4.43 0.00 32.90 3.62
861 972 7.941238 AGTCCAAGAAGAATATATGGTTCCATG 59.059 37.037 13.86 0.00 32.90 3.66
873 996 4.974645 TGGTTCCATGGGAGATATACAC 57.025 45.455 13.02 0.00 31.21 2.90
883 1006 6.471233 TGGGAGATATACACACTCTTGAAG 57.529 41.667 0.00 0.00 0.00 3.02
890 1013 5.745312 ATACACACTCTTGAAGGACATCA 57.255 39.130 0.00 0.00 0.00 3.07
902 1025 5.128205 TGAAGGACATCAATGCTATCAAGG 58.872 41.667 0.00 0.00 0.00 3.61
905 1028 4.411540 AGGACATCAATGCTATCAAGGAGT 59.588 41.667 0.00 0.00 0.00 3.85
906 1029 5.604231 AGGACATCAATGCTATCAAGGAGTA 59.396 40.000 0.00 0.00 0.00 2.59
907 1030 5.698545 GGACATCAATGCTATCAAGGAGTAC 59.301 44.000 0.00 0.00 0.00 2.73
908 1031 6.239217 ACATCAATGCTATCAAGGAGTACA 57.761 37.500 0.00 0.00 0.00 2.90
909 1032 6.286758 ACATCAATGCTATCAAGGAGTACAG 58.713 40.000 0.00 0.00 0.00 2.74
910 1033 6.098838 ACATCAATGCTATCAAGGAGTACAGA 59.901 38.462 0.00 0.00 0.00 3.41
911 1034 5.907207 TCAATGCTATCAAGGAGTACAGAC 58.093 41.667 0.00 0.00 0.00 3.51
912 1035 4.946478 ATGCTATCAAGGAGTACAGACC 57.054 45.455 0.00 0.00 0.00 3.85
915 1038 3.068873 GCTATCAAGGAGTACAGACCAGG 59.931 52.174 0.00 0.00 0.00 4.45
934 1061 4.211920 CAGGAGAAGGAGAAGTAGGGTAG 58.788 52.174 0.00 0.00 0.00 3.18
937 1064 3.367321 AGAAGGAGAAGTAGGGTAGTGC 58.633 50.000 0.00 0.00 0.00 4.40
940 1067 0.248539 GAGAAGTAGGGTAGTGCGCG 60.249 60.000 0.00 0.00 34.93 6.86
957 1084 1.880894 CGCAACGGAGAGGACAGTA 59.119 57.895 0.00 0.00 0.00 2.74
1005 1132 2.187946 GACACCGGAGCCATGGAG 59.812 66.667 18.40 2.76 0.00 3.86
1019 1146 2.754658 GGAGGAAGGGCGAGACGA 60.755 66.667 0.00 0.00 0.00 4.20
1023 1150 0.898789 AGGAAGGGCGAGACGAGAAA 60.899 55.000 0.00 0.00 0.00 2.52
1058 1185 0.404040 AATTCAGAAGACCGGGGCAA 59.596 50.000 6.32 0.00 0.00 4.52
1064 1191 0.391263 GAAGACCGGGGCAACACTAG 60.391 60.000 6.32 0.00 38.54 2.57
1066 1193 1.375523 GACCGGGGCAACACTAGTG 60.376 63.158 21.44 21.44 38.54 2.74
1070 1197 0.670546 CGGGGCAACACTAGTGACAG 60.671 60.000 29.30 17.57 38.54 3.51
1125 1252 5.050091 CGTCCAATTCATGCAGAAGGTATAC 60.050 44.000 0.00 0.00 40.15 1.47
1131 1268 4.707105 TCATGCAGAAGGTATACATGTGG 58.293 43.478 9.11 0.00 39.27 4.17
1132 1269 2.917933 TGCAGAAGGTATACATGTGGC 58.082 47.619 9.11 3.18 0.00 5.01
1141 1278 3.997021 GGTATACATGTGGCTGCAGTATC 59.003 47.826 16.64 6.25 0.00 2.24
1142 1279 4.262635 GGTATACATGTGGCTGCAGTATCT 60.263 45.833 16.64 0.00 0.00 1.98
1143 1280 2.034104 ACATGTGGCTGCAGTATCTG 57.966 50.000 16.64 9.40 34.12 2.90
1144 1281 1.306148 CATGTGGCTGCAGTATCTGG 58.694 55.000 16.64 0.00 31.21 3.86
1145 1282 1.134310 CATGTGGCTGCAGTATCTGGA 60.134 52.381 16.64 0.00 31.21 3.86
1158 1295 5.221087 GCAGTATCTGGAGTAGTTCTGTACC 60.221 48.000 0.00 0.00 31.21 3.34
1166 1303 3.539604 AGTAGTTCTGTACCGCGTAGAT 58.460 45.455 4.92 0.00 0.00 1.98
1167 1304 2.846039 AGTTCTGTACCGCGTAGATG 57.154 50.000 4.92 0.00 0.00 2.90
1168 1305 1.197910 GTTCTGTACCGCGTAGATGC 58.802 55.000 4.92 0.00 0.00 3.91
1169 1306 0.812549 TTCTGTACCGCGTAGATGCA 59.187 50.000 4.92 0.00 34.15 3.96
1170 1307 0.380733 TCTGTACCGCGTAGATGCAG 59.619 55.000 4.92 7.00 34.15 4.41
1171 1308 1.209275 CTGTACCGCGTAGATGCAGC 61.209 60.000 4.92 0.00 34.15 5.25
1172 1309 1.226859 GTACCGCGTAGATGCAGCA 60.227 57.895 4.07 0.00 34.15 4.41
1197 1334 0.321346 TGCTGGAAGAATCGTGCTCA 59.679 50.000 0.00 0.00 34.07 4.26
1201 1338 3.730061 GCTGGAAGAATCGTGCTCATTTG 60.730 47.826 0.00 0.00 34.07 2.32
1206 1343 0.095245 AATCGTGCTCATTTGACGCG 59.905 50.000 3.53 3.53 38.59 6.01
1208 1345 2.480555 GTGCTCATTTGACGCGGG 59.519 61.111 12.47 0.00 0.00 6.13
1214 1351 0.871722 TCATTTGACGCGGGTTTGAG 59.128 50.000 12.47 0.00 0.00 3.02
1220 1357 1.298859 GACGCGGGTTTGAGCAGATT 61.299 55.000 12.47 0.00 0.00 2.40
1226 1363 1.203287 GGGTTTGAGCAGATTCTTGCC 59.797 52.381 4.99 0.00 45.18 4.52
1233 1370 3.127548 TGAGCAGATTCTTGCCGAAATTC 59.872 43.478 4.99 0.00 45.18 2.17
1457 1594 3.003378 GGAAGCAGGTAGTTTCAACACAC 59.997 47.826 0.00 0.00 39.01 3.82
1470 1607 2.483877 TCAACACACGGATCTTCATTGC 59.516 45.455 0.00 0.00 0.00 3.56
1497 1637 7.848223 TGAAATGTGATACGATCAGAAACAT 57.152 32.000 0.00 0.00 40.53 2.71
1523 1693 8.615878 TGTAGATTATCCGAAAAATATGTGGG 57.384 34.615 0.00 0.00 0.00 4.61
1545 1715 2.033194 GTTGCAGGTGCCGTCCTAC 61.033 63.158 0.00 0.00 41.18 3.18
1806 1981 4.797800 TCTGCTGATATGTGATAGCTCC 57.202 45.455 0.00 0.00 37.10 4.70
1820 2040 1.673665 GCTCCTGCAGGTTGGTGAG 60.674 63.158 31.58 20.95 39.41 3.51
1926 2173 6.154706 GGTCTTGATCTTACCTCAAACTCCTA 59.845 42.308 0.00 0.00 32.53 2.94
1957 2222 2.411547 CGTTGCATTCTTCTTCGTGGAC 60.412 50.000 0.00 0.00 0.00 4.02
1989 2254 4.143333 CGGGGGCGTCGATGAACT 62.143 66.667 9.31 0.00 0.00 3.01
2102 2367 2.116238 GCCTGGACCTACAACCTCATA 58.884 52.381 0.00 0.00 0.00 2.15
2210 2484 4.414337 TTTGCTTTAACCAGTGGCAATT 57.586 36.364 9.78 0.00 41.47 2.32
2212 2486 4.782019 TGCTTTAACCAGTGGCAATTAG 57.218 40.909 9.78 1.80 0.00 1.73
2233 2576 7.848223 TTAGATTGTGATGTTACATGGTGAG 57.152 36.000 1.24 0.00 0.00 3.51
2259 2602 0.527565 ACATGCGCATGGGTCTTTTC 59.472 50.000 43.46 0.00 42.91 2.29
2265 2608 0.521735 GCATGGGTCTTTTCACCGAC 59.478 55.000 0.00 0.00 37.30 4.79
2266 2609 1.890876 CATGGGTCTTTTCACCGACA 58.109 50.000 0.00 0.00 37.30 4.35
2270 2613 4.088056 TGGGTCTTTTCACCGACATAAA 57.912 40.909 0.00 0.00 37.30 1.40
2275 2618 2.835580 TTTCACCGACATAAACCCGA 57.164 45.000 0.00 0.00 0.00 5.14
2282 2625 2.612212 CCGACATAAACCCGATTCCAAG 59.388 50.000 0.00 0.00 0.00 3.61
2283 2626 3.267483 CGACATAAACCCGATTCCAAGT 58.733 45.455 0.00 0.00 0.00 3.16
2286 2629 5.352016 CGACATAAACCCGATTCCAAGTAAA 59.648 40.000 0.00 0.00 0.00 2.01
2288 2631 6.243148 ACATAAACCCGATTCCAAGTAAAGT 58.757 36.000 0.00 0.00 0.00 2.66
2289 2632 6.717997 ACATAAACCCGATTCCAAGTAAAGTT 59.282 34.615 0.00 0.00 0.00 2.66
2290 2633 7.231925 ACATAAACCCGATTCCAAGTAAAGTTT 59.768 33.333 0.00 0.00 0.00 2.66
2391 4633 6.296026 TGCCTTGTTATCACAACTAAGAACT 58.704 36.000 0.00 0.00 38.03 3.01
2413 4655 8.728088 AACTTAATTCGCATTACAAAGACTTG 57.272 30.769 0.00 0.00 38.61 3.16
2446 4689 8.375506 AGATGGTGAGATTTTACTTCAACAGTA 58.624 33.333 0.00 0.00 36.88 2.74
2467 4711 6.364165 CAGTACAGCCAAATGTTCAAATTCAG 59.636 38.462 0.00 0.00 34.56 3.02
2503 4747 6.313519 ACCAACTTGAAAGCATCTCCTATA 57.686 37.500 0.00 0.00 0.00 1.31
2504 4748 6.904626 ACCAACTTGAAAGCATCTCCTATAT 58.095 36.000 0.00 0.00 0.00 0.86
2505 4749 6.995091 ACCAACTTGAAAGCATCTCCTATATC 59.005 38.462 0.00 0.00 0.00 1.63
2540 4789 2.025605 ACATGTGTCAGCCCAATCATCT 60.026 45.455 0.00 0.00 0.00 2.90
2544 4795 2.945668 GTGTCAGCCCAATCATCTTACC 59.054 50.000 0.00 0.00 0.00 2.85
2548 4799 1.141053 AGCCCAATCATCTTACCGACC 59.859 52.381 0.00 0.00 0.00 4.79
2592 5010 7.494922 TGCAGATATATATAACTGGCCAGAA 57.505 36.000 39.19 25.43 34.76 3.02
2651 5069 8.443953 AAAAATGGCAAGCAAACTAAACAATA 57.556 26.923 0.00 0.00 0.00 1.90
2652 5070 8.443953 AAAATGGCAAGCAAACTAAACAATAA 57.556 26.923 0.00 0.00 0.00 1.40
2692 5110 1.004292 GTGGCGTTGACACAACACTAC 60.004 52.381 13.62 8.79 41.94 2.73
2855 5274 1.633852 CGGTGAAAGCTGAGCAGAGC 61.634 60.000 7.39 0.00 39.46 4.09
2856 5275 0.604780 GGTGAAAGCTGAGCAGAGCA 60.605 55.000 7.39 0.00 41.83 4.26
2857 5276 1.233019 GTGAAAGCTGAGCAGAGCAA 58.767 50.000 7.39 0.00 41.83 3.91
2858 5277 1.069364 GTGAAAGCTGAGCAGAGCAAC 60.069 52.381 7.39 0.00 41.83 4.17
2861 5280 2.775911 AAGCTGAGCAGAGCAACATA 57.224 45.000 7.39 0.00 41.83 2.29
2862 5281 2.775911 AGCTGAGCAGAGCAACATAA 57.224 45.000 7.39 0.00 41.83 1.90
2863 5282 3.278668 AGCTGAGCAGAGCAACATAAT 57.721 42.857 7.39 0.00 41.83 1.28
2865 5284 2.290093 GCTGAGCAGAGCAACATAATCC 59.710 50.000 0.00 0.00 38.95 3.01
3157 5596 0.250901 GGCTTGACATCAGGGTGTGT 60.251 55.000 0.00 0.00 31.16 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 9.429359 CATCCCTATGTAGTCTGTATTGAAATC 57.571 37.037 0.00 0.00 0.00 2.17
103 110 9.685276 ATGGATTAAAATGAGTGAATCTACACA 57.315 29.630 0.00 0.00 42.45 3.72
119 126 8.303156 CCAATACGGATTGCATATGGATTAAAA 58.697 33.333 15.31 0.00 41.09 1.52
123 130 5.569355 TCCAATACGGATTGCATATGGATT 58.431 37.500 15.31 0.00 41.09 3.01
124 131 5.178096 TCCAATACGGATTGCATATGGAT 57.822 39.130 15.31 0.00 41.09 3.41
126 133 5.649395 AGATTCCAATACGGATTGCATATGG 59.351 40.000 15.31 0.67 45.80 2.74
127 134 6.596888 AGAGATTCCAATACGGATTGCATATG 59.403 38.462 15.31 0.95 45.80 1.78
128 135 6.715280 AGAGATTCCAATACGGATTGCATAT 58.285 36.000 15.31 6.25 45.80 1.78
135 142 7.181125 AGGCTTTATAGAGATTCCAATACGGAT 59.819 37.037 0.00 0.00 45.80 4.18
154 161 7.447594 CCTCCGTTCCTAAATATAAGGCTTTA 58.552 38.462 4.45 0.00 33.84 1.85
167 174 2.105766 GCTTACTCCCTCCGTTCCTAA 58.894 52.381 0.00 0.00 0.00 2.69
302 309 6.867550 TGTGTGGTACAAATTGAAATGTGAA 58.132 32.000 0.00 0.00 44.16 3.18
396 403 9.261180 TCAAATGTACACTGAAACAAAACAAAA 57.739 25.926 0.00 0.00 0.00 2.44
399 406 8.994429 ATTCAAATGTACACTGAAACAAAACA 57.006 26.923 20.37 2.50 33.08 2.83
400 407 9.301153 AGATTCAAATGTACACTGAAACAAAAC 57.699 29.630 20.37 11.12 33.08 2.43
401 408 9.515020 GAGATTCAAATGTACACTGAAACAAAA 57.485 29.630 20.37 3.64 33.08 2.44
405 412 7.202016 TGGAGATTCAAATGTACACTGAAAC 57.798 36.000 20.37 18.17 33.08 2.78
408 415 6.475504 ACATGGAGATTCAAATGTACACTGA 58.524 36.000 0.00 0.99 31.63 3.41
409 416 6.748333 ACATGGAGATTCAAATGTACACTG 57.252 37.500 0.00 0.00 31.63 3.66
414 421 9.460019 TCATTTGTACATGGAGATTCAAATGTA 57.540 29.630 21.88 12.09 45.37 2.29
415 422 8.352137 TCATTTGTACATGGAGATTCAAATGT 57.648 30.769 21.88 0.00 45.37 2.71
416 423 9.459640 GATCATTTGTACATGGAGATTCAAATG 57.540 33.333 18.91 18.91 45.94 2.32
417 424 9.192642 TGATCATTTGTACATGGAGATTCAAAT 57.807 29.630 0.00 0.00 36.41 2.32
420 427 6.769341 CCTGATCATTTGTACATGGAGATTCA 59.231 38.462 0.00 0.00 0.00 2.57
421 428 6.994496 TCCTGATCATTTGTACATGGAGATTC 59.006 38.462 0.00 0.00 0.00 2.52
422 429 6.903516 TCCTGATCATTTGTACATGGAGATT 58.096 36.000 0.00 0.00 0.00 2.40
423 430 6.505048 TCCTGATCATTTGTACATGGAGAT 57.495 37.500 0.00 0.00 0.00 2.75
424 431 5.955961 TCCTGATCATTTGTACATGGAGA 57.044 39.130 0.00 0.00 0.00 3.71
425 432 7.578310 AAATCCTGATCATTTGTACATGGAG 57.422 36.000 0.00 0.00 0.00 3.86
427 434 9.520204 GTTAAAATCCTGATCATTTGTACATGG 57.480 33.333 0.00 0.00 0.00 3.66
446 546 7.714377 TGACAAAGGTGCATCAATTGTTAAAAT 59.286 29.630 18.56 0.00 34.59 1.82
455 555 3.489355 TGTCTGACAAAGGTGCATCAAT 58.511 40.909 8.27 0.00 0.00 2.57
461 561 4.377431 CGAACTATTGTCTGACAAAGGTGC 60.377 45.833 25.26 21.44 41.96 5.01
464 564 5.230942 AGACGAACTATTGTCTGACAAAGG 58.769 41.667 25.26 21.04 46.52 3.11
488 588 4.892345 TCTGTTGGTTTGTTCATGAATGGA 59.108 37.500 12.12 0.00 0.00 3.41
490 590 5.119588 GCATCTGTTGGTTTGTTCATGAATG 59.880 40.000 12.12 2.07 0.00 2.67
491 591 5.221481 TGCATCTGTTGGTTTGTTCATGAAT 60.221 36.000 12.12 0.00 0.00 2.57
499 599 4.470334 AAGTTTGCATCTGTTGGTTTGT 57.530 36.364 0.00 0.00 0.00 2.83
536 636 5.689835 TGCATGCTTGTACCATCCTAAATA 58.310 37.500 20.33 0.00 0.00 1.40
537 637 4.535781 TGCATGCTTGTACCATCCTAAAT 58.464 39.130 20.33 0.00 0.00 1.40
546 646 2.042686 TGGATCTGCATGCTTGTACC 57.957 50.000 20.33 15.29 0.00 3.34
553 653 6.101332 TCAAAACTAAAATGGATCTGCATGC 58.899 36.000 11.82 11.82 0.00 4.06
649 758 6.033831 CACAATATTTCACGCCAAACTGAATC 59.966 38.462 0.00 0.00 0.00 2.52
658 767 1.539157 TGGCACAATATTTCACGCCA 58.461 45.000 11.11 11.11 46.80 5.69
722 831 7.158021 CACCAAGGGCTAAACATGATTAAAAA 58.842 34.615 0.00 0.00 0.00 1.94
723 832 6.295575 CCACCAAGGGCTAAACATGATTAAAA 60.296 38.462 0.00 0.00 0.00 1.52
724 833 5.186797 CCACCAAGGGCTAAACATGATTAAA 59.813 40.000 0.00 0.00 0.00 1.52
725 834 4.709397 CCACCAAGGGCTAAACATGATTAA 59.291 41.667 0.00 0.00 0.00 1.40
726 835 4.264172 ACCACCAAGGGCTAAACATGATTA 60.264 41.667 0.00 0.00 43.89 1.75
766 875 1.520342 GGCGTGTGCAAAAAGCCAA 60.520 52.632 18.71 0.00 46.48 4.52
767 876 2.105930 GGCGTGTGCAAAAAGCCA 59.894 55.556 18.71 0.00 46.48 4.75
769 878 0.310854 AGTAGGCGTGTGCAAAAAGC 59.689 50.000 0.00 0.00 45.35 3.51
770 879 2.032799 TGAAGTAGGCGTGTGCAAAAAG 59.967 45.455 0.00 0.00 45.35 2.27
771 880 2.017782 TGAAGTAGGCGTGTGCAAAAA 58.982 42.857 0.00 0.00 45.35 1.94
772 881 1.601903 CTGAAGTAGGCGTGTGCAAAA 59.398 47.619 0.00 0.00 45.35 2.44
773 882 1.225855 CTGAAGTAGGCGTGTGCAAA 58.774 50.000 0.00 0.00 45.35 3.68
823 933 7.554959 TTCTTCTTGGACTGATTACCTACTT 57.445 36.000 0.00 0.00 0.00 2.24
854 965 5.305644 AGAGTGTGTATATCTCCCATGGAAC 59.694 44.000 15.22 0.21 0.00 3.62
856 967 5.079998 AGAGTGTGTATATCTCCCATGGA 57.920 43.478 15.22 0.00 0.00 3.41
858 969 6.410942 TCAAGAGTGTGTATATCTCCCATG 57.589 41.667 0.00 0.00 0.00 3.66
861 972 5.598830 TCCTTCAAGAGTGTGTATATCTCCC 59.401 44.000 0.00 0.00 0.00 4.30
873 996 4.008330 AGCATTGATGTCCTTCAAGAGTG 58.992 43.478 0.00 0.00 38.90 3.51
883 1006 4.712476 ACTCCTTGATAGCATTGATGTCC 58.288 43.478 0.00 0.00 0.00 4.02
890 1013 4.716784 TGGTCTGTACTCCTTGATAGCATT 59.283 41.667 0.00 0.00 0.00 3.56
902 1025 3.020984 CTCCTTCTCCTGGTCTGTACTC 58.979 54.545 0.00 0.00 0.00 2.59
905 1028 3.076182 ACTTCTCCTTCTCCTGGTCTGTA 59.924 47.826 0.00 0.00 0.00 2.74
906 1029 2.158234 ACTTCTCCTTCTCCTGGTCTGT 60.158 50.000 0.00 0.00 0.00 3.41
907 1030 2.534990 ACTTCTCCTTCTCCTGGTCTG 58.465 52.381 0.00 0.00 0.00 3.51
908 1031 3.309556 CCTACTTCTCCTTCTCCTGGTCT 60.310 52.174 0.00 0.00 0.00 3.85
909 1032 3.028130 CCTACTTCTCCTTCTCCTGGTC 58.972 54.545 0.00 0.00 0.00 4.02
910 1033 2.292587 CCCTACTTCTCCTTCTCCTGGT 60.293 54.545 0.00 0.00 0.00 4.00
911 1034 2.292587 ACCCTACTTCTCCTTCTCCTGG 60.293 54.545 0.00 0.00 0.00 4.45
912 1035 3.108847 ACCCTACTTCTCCTTCTCCTG 57.891 52.381 0.00 0.00 0.00 3.86
915 1038 3.382227 GCACTACCCTACTTCTCCTTCTC 59.618 52.174 0.00 0.00 0.00 2.87
937 1064 4.717629 TGTCCTCTCCGTTGCGCG 62.718 66.667 0.00 0.00 40.95 6.86
940 1067 1.927895 CATACTGTCCTCTCCGTTGC 58.072 55.000 0.00 0.00 0.00 4.17
957 1084 3.381908 CGTCTCTCTTAGGTTAGTGGCAT 59.618 47.826 0.00 0.00 0.00 4.40
1005 1132 0.458716 CTTTCTCGTCTCGCCCTTCC 60.459 60.000 0.00 0.00 0.00 3.46
1019 1146 0.605589 CTCAGACGTGGCCTCTTTCT 59.394 55.000 3.32 1.90 0.00 2.52
1023 1150 1.205893 GAATTCTCAGACGTGGCCTCT 59.794 52.381 3.32 0.00 0.00 3.69
1047 1174 1.535687 ACTAGTGTTGCCCCGGTCT 60.536 57.895 0.00 0.00 0.00 3.85
1058 1185 1.332195 TCTGCTGCTGTCACTAGTGT 58.668 50.000 21.99 0.00 0.00 3.55
1091 1218 1.017387 GAATTGGACGGACATCAGGC 58.983 55.000 0.00 0.00 0.00 4.85
1093 1220 2.032550 GCATGAATTGGACGGACATCAG 59.967 50.000 0.00 0.00 0.00 2.90
1098 1225 1.737838 TCTGCATGAATTGGACGGAC 58.262 50.000 0.00 0.00 0.00 4.79
1125 1252 1.134310 TCCAGATACTGCAGCCACATG 60.134 52.381 15.27 6.59 0.00 3.21
1131 1268 3.383185 AGAACTACTCCAGATACTGCAGC 59.617 47.826 15.27 0.00 0.00 5.25
1132 1269 4.400884 ACAGAACTACTCCAGATACTGCAG 59.599 45.833 13.48 13.48 0.00 4.41
1141 1278 1.202154 CGCGGTACAGAACTACTCCAG 60.202 57.143 0.00 0.00 0.00 3.86
1142 1279 0.806868 CGCGGTACAGAACTACTCCA 59.193 55.000 0.00 0.00 0.00 3.86
1143 1280 0.807496 ACGCGGTACAGAACTACTCC 59.193 55.000 12.47 0.00 0.00 3.85
1144 1281 2.932614 TCTACGCGGTACAGAACTACTC 59.067 50.000 12.47 0.00 0.00 2.59
1145 1282 2.977914 TCTACGCGGTACAGAACTACT 58.022 47.619 12.47 0.00 0.00 2.57
1146 1283 3.615614 CATCTACGCGGTACAGAACTAC 58.384 50.000 12.47 0.00 0.00 2.73
1147 1284 2.032550 GCATCTACGCGGTACAGAACTA 59.967 50.000 12.47 0.00 0.00 2.24
1158 1295 2.178474 AAATTTGCTGCATCTACGCG 57.822 45.000 3.53 3.53 33.35 6.01
1171 1308 4.143263 GCACGATTCTTCCAGCAAAATTTG 60.143 41.667 0.57 0.57 0.00 2.32
1172 1309 3.989817 GCACGATTCTTCCAGCAAAATTT 59.010 39.130 0.00 0.00 0.00 1.82
1188 1325 1.695893 CCGCGTCAAATGAGCACGAT 61.696 55.000 4.92 0.00 35.49 3.73
1197 1334 1.169661 TGCTCAAACCCGCGTCAAAT 61.170 50.000 4.92 0.00 0.00 2.32
1201 1338 1.298859 AATCTGCTCAAACCCGCGTC 61.299 55.000 4.92 0.00 0.00 5.19
1206 1343 1.203287 GGCAAGAATCTGCTCAAACCC 59.797 52.381 5.07 0.00 42.25 4.11
1208 1345 1.806542 TCGGCAAGAATCTGCTCAAAC 59.193 47.619 5.07 0.00 42.25 2.93
1214 1351 3.432782 CAGAATTTCGGCAAGAATCTGC 58.567 45.455 10.03 0.00 38.42 4.26
1220 1357 2.566824 GCCCAGAATTTCGGCAAGA 58.433 52.632 9.63 0.00 42.52 3.02
1226 1363 2.403252 AGTAGGTGCCCAGAATTTCG 57.597 50.000 0.00 0.00 0.00 3.46
1233 1370 2.437281 AGATCATGAAGTAGGTGCCCAG 59.563 50.000 0.00 0.00 0.00 4.45
1238 1375 2.868583 CGCCAAGATCATGAAGTAGGTG 59.131 50.000 0.00 3.15 0.00 4.00
1470 1607 6.753897 TTCTGATCGTATCACATTTCATCG 57.246 37.500 0.00 0.00 35.06 3.84
1484 1624 7.382488 CGGATAATCTACAATGTTTCTGATCGT 59.618 37.037 0.00 0.00 0.00 3.73
1497 1637 9.062524 CCCACATATTTTTCGGATAATCTACAA 57.937 33.333 0.00 0.00 0.00 2.41
1523 1693 3.181169 GACGGCACCTGCAACACAC 62.181 63.158 0.00 0.00 44.36 3.82
1545 1715 4.694233 AGCACCTGAGCCAGCACG 62.694 66.667 0.00 0.00 34.23 5.34
1715 1885 2.196382 TACTGCTCTGTCGTCCGTGC 62.196 60.000 0.00 0.00 0.00 5.34
1806 1981 1.799258 GCCAACTCACCAACCTGCAG 61.799 60.000 6.78 6.78 0.00 4.41
1820 2040 1.598130 AACTGCGAGACCAGCCAAC 60.598 57.895 0.00 0.00 36.29 3.77
1926 2173 2.143122 AGAATGCAACGTCGACATGTT 58.857 42.857 17.16 9.65 31.34 2.71
1989 2254 2.123683 CCCTAGGCTCCTCGCAGA 60.124 66.667 2.05 0.00 41.67 4.26
2036 2301 1.359833 GACGACGTACACCCACACA 59.640 57.895 0.00 0.00 0.00 3.72
2080 2345 0.250513 GAGGTTGTAGGTCCAGGCTG 59.749 60.000 7.75 7.75 0.00 4.85
2210 2484 7.181569 TCTCACCATGTAACATCACAATCTA 57.818 36.000 0.00 0.00 30.84 1.98
2212 2486 6.741992 TTCTCACCATGTAACATCACAATC 57.258 37.500 0.00 0.00 30.84 2.67
2233 2576 1.405105 ACCCATGCGCATGTACATTTC 59.595 47.619 39.70 0.09 37.11 2.17
2259 2602 1.937899 GGAATCGGGTTTATGTCGGTG 59.062 52.381 0.00 0.00 0.00 4.94
2265 2608 6.753107 ACTTTACTTGGAATCGGGTTTATG 57.247 37.500 0.00 0.00 0.00 1.90
2266 2609 7.668469 AGAAACTTTACTTGGAATCGGGTTTAT 59.332 33.333 0.00 0.00 0.00 1.40
2270 2613 4.981812 AGAAACTTTACTTGGAATCGGGT 58.018 39.130 0.00 0.00 0.00 5.28
2275 2618 7.898014 ACAAAGGAGAAACTTTACTTGGAAT 57.102 32.000 0.00 0.00 38.56 3.01
2282 2625 6.459670 TGGGAAACAAAGGAGAAACTTTAC 57.540 37.500 0.00 0.00 38.56 2.01
2283 2626 7.669089 AATGGGAAACAAAGGAGAAACTTTA 57.331 32.000 0.00 0.00 38.56 1.85
2286 2629 5.684813 GCAAATGGGAAACAAAGGAGAAACT 60.685 40.000 0.00 0.00 0.00 2.66
2288 2631 4.444164 GGCAAATGGGAAACAAAGGAGAAA 60.444 41.667 0.00 0.00 0.00 2.52
2289 2632 3.070878 GGCAAATGGGAAACAAAGGAGAA 59.929 43.478 0.00 0.00 0.00 2.87
2290 2633 2.632512 GGCAAATGGGAAACAAAGGAGA 59.367 45.455 0.00 0.00 0.00 3.71
2344 2687 6.350445 GCATGGTAAAACTTGTCCAGATTGAT 60.350 38.462 0.00 0.00 33.33 2.57
2363 2706 3.766545 AGTTGTGATAACAAGGCATGGT 58.233 40.909 0.00 0.00 0.00 3.55
2391 4633 7.441890 TCCAAGTCTTTGTAATGCGAATTAA 57.558 32.000 0.00 0.00 32.21 1.40
2413 4655 6.410540 AGTAAAATCTCACCATCTGAGTTCC 58.589 40.000 0.00 0.00 46.09 3.62
2433 4675 5.825679 ACATTTGGCTGTACTGTTGAAGTAA 59.174 36.000 1.46 0.00 43.08 2.24
2434 4676 5.373222 ACATTTGGCTGTACTGTTGAAGTA 58.627 37.500 1.46 0.00 40.56 2.24
2446 4689 5.534207 TCTGAATTTGAACATTTGGCTGT 57.466 34.783 0.00 0.00 0.00 4.40
2467 4711 9.140286 GCTTTCAAGTTGGTAATTTCCTATTTC 57.860 33.333 2.34 0.00 0.00 2.17
2528 4777 1.141053 GGTCGGTAAGATGATTGGGCT 59.859 52.381 0.00 0.00 0.00 5.19
2540 4789 3.410631 TGATTTTCAGCTGGTCGGTAA 57.589 42.857 15.13 0.00 0.00 2.85
2544 4795 2.666619 GCACTTGATTTTCAGCTGGTCG 60.667 50.000 15.13 0.00 0.00 4.79
2548 4799 3.122948 GCATTGCACTTGATTTTCAGCTG 59.877 43.478 7.63 7.63 0.00 4.24
2583 5001 7.601856 TGATGTTTATTTAAGTTTCTGGCCAG 58.398 34.615 27.87 27.87 0.00 4.85
2651 5069 1.616159 ATGCGGCCTTGTAACACTTT 58.384 45.000 0.00 0.00 0.00 2.66
2652 5070 1.269448 CAATGCGGCCTTGTAACACTT 59.731 47.619 9.48 0.00 0.00 3.16
2855 5274 5.003160 TGTCAGTTCAGTGGGATTATGTTG 58.997 41.667 0.00 0.00 0.00 3.33
2856 5275 5.241403 TGTCAGTTCAGTGGGATTATGTT 57.759 39.130 0.00 0.00 0.00 2.71
2857 5276 4.908601 TGTCAGTTCAGTGGGATTATGT 57.091 40.909 0.00 0.00 0.00 2.29
2858 5277 4.637534 CCTTGTCAGTTCAGTGGGATTATG 59.362 45.833 0.00 0.00 0.00 1.90
2861 5280 2.224867 CCCTTGTCAGTTCAGTGGGATT 60.225 50.000 0.00 0.00 36.07 3.01
2862 5281 1.352352 CCCTTGTCAGTTCAGTGGGAT 59.648 52.381 0.00 0.00 36.07 3.85
2863 5282 0.764890 CCCTTGTCAGTTCAGTGGGA 59.235 55.000 0.00 0.00 36.07 4.37
2865 5284 0.179020 TGCCCTTGTCAGTTCAGTGG 60.179 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.