Multiple sequence alignment - TraesCS3B01G155700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G155700 chr3B 100.000 4233 0 0 2571 6803 148482442 148478210 0.000000e+00 7817.0
1 TraesCS3B01G155700 chr3B 100.000 1157 0 0 1339 2495 148483674 148482518 0.000000e+00 2137.0
2 TraesCS3B01G155700 chr3B 100.000 1075 0 0 1 1075 148485012 148483938 0.000000e+00 1986.0
3 TraesCS3B01G155700 chr3B 95.902 122 4 1 2678 2798 822193334 822193213 5.380000e-46 196.0
4 TraesCS3B01G155700 chr3D 93.500 3723 160 42 3143 6803 97919944 97916242 0.000000e+00 5459.0
5 TraesCS3B01G155700 chr3D 92.418 699 29 11 1352 2043 97921717 97921036 0.000000e+00 976.0
6 TraesCS3B01G155700 chr3D 87.840 699 84 1 1 699 271449056 271448359 0.000000e+00 819.0
7 TraesCS3B01G155700 chr3D 92.008 488 12 3 2034 2495 97920996 97920510 0.000000e+00 660.0
8 TraesCS3B01G155700 chr3D 97.771 314 6 1 2782 3095 97920256 97919944 2.160000e-149 540.0
9 TraesCS3B01G155700 chr3D 94.048 168 9 1 755 921 97922348 97922181 3.150000e-63 254.0
10 TraesCS3B01G155700 chr3A 82.494 2205 193 66 4681 6803 114794892 114792799 0.000000e+00 1755.0
11 TraesCS3B01G155700 chr3A 90.312 640 44 6 3426 4049 114796344 114795707 0.000000e+00 822.0
12 TraesCS3B01G155700 chr3A 90.829 567 40 3 4066 4629 114795570 114795013 0.000000e+00 749.0
13 TraesCS3B01G155700 chr3A 85.072 690 78 13 1372 2037 114798066 114797378 0.000000e+00 680.0
14 TraesCS3B01G155700 chr3A 91.883 308 16 2 2782 3081 114796714 114796408 8.160000e-114 422.0
15 TraesCS3B01G155700 chr3A 92.754 276 20 0 2220 2495 114797147 114796872 3.820000e-107 399.0
16 TraesCS3B01G155700 chr3A 89.274 317 12 5 766 1073 114798631 114798328 1.790000e-100 377.0
17 TraesCS3B01G155700 chr2B 89.970 658 63 1 42 699 91032378 91031724 0.000000e+00 846.0
18 TraesCS3B01G155700 chr2B 95.763 118 5 0 2677 2794 43851199 43851082 2.500000e-44 191.0
19 TraesCS3B01G155700 chr2B 83.654 104 15 2 3323 3425 161477676 161477778 5.620000e-16 97.1
20 TraesCS3B01G155700 chr7A 82.403 699 123 0 1 699 55015350 55014652 1.620000e-170 610.0
21 TraesCS3B01G155700 chr7A 82.403 699 123 0 1 699 495564257 495564955 1.620000e-170 610.0
22 TraesCS3B01G155700 chr7A 97.917 48 1 0 2132 2179 226753934 226753981 4.370000e-12 84.2
23 TraesCS3B01G155700 chr6D 98.198 111 2 0 2676 2786 397359925 397359815 1.940000e-45 195.0
24 TraesCS3B01G155700 chr7D 97.345 113 3 0 2677 2789 382742535 382742647 6.960000e-45 193.0
25 TraesCS3B01G155700 chr6A 97.345 113 2 1 2679 2791 70934033 70933922 2.500000e-44 191.0
26 TraesCS3B01G155700 chr6A 94.309 123 4 3 2676 2796 243302767 243302646 1.170000e-42 185.0
27 TraesCS3B01G155700 chr6A 97.826 46 1 0 2130 2175 584511451 584511406 5.660000e-11 80.5
28 TraesCS3B01G155700 chr6A 89.831 59 5 1 2118 2176 104308569 104308512 2.630000e-09 75.0
29 TraesCS3B01G155700 chr2D 98.165 109 2 0 2678 2786 176518011 176518119 2.500000e-44 191.0
30 TraesCS3B01G155700 chr2D 72.414 551 140 11 1 545 619314323 619314867 1.520000e-36 165.0
31 TraesCS3B01G155700 chr2D 95.833 48 2 0 2127 2174 360737949 360737902 2.030000e-10 78.7
32 TraesCS3B01G155700 chr2D 91.071 56 3 2 2121 2175 36277520 36277574 2.630000e-09 75.0
33 TraesCS3B01G155700 chr1B 95.798 119 4 1 2674 2792 683469672 683469555 2.500000e-44 191.0
34 TraesCS3B01G155700 chr5B 94.262 122 6 1 2676 2797 455216630 455216510 1.170000e-42 185.0
35 TraesCS3B01G155700 chr5B 91.071 56 5 0 2127 2182 664951665 664951610 7.320000e-10 76.8
36 TraesCS3B01G155700 chr1D 82.524 103 16 2 3323 3424 385045090 385044989 9.400000e-14 89.8
37 TraesCS3B01G155700 chr5D 95.833 48 2 0 2134 2181 302021443 302021490 2.030000e-10 78.7
38 TraesCS3B01G155700 chr5A 91.228 57 3 2 2119 2175 447544581 447544527 7.320000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G155700 chr3B 148478210 148485012 6802 True 3980.000000 7817 100.000000 1 6803 3 chr3B.!!$R2 6802
1 TraesCS3B01G155700 chr3D 97916242 97922348 6106 True 1577.800000 5459 93.949000 755 6803 5 chr3D.!!$R2 6048
2 TraesCS3B01G155700 chr3D 271448359 271449056 697 True 819.000000 819 87.840000 1 699 1 chr3D.!!$R1 698
3 TraesCS3B01G155700 chr3A 114792799 114798631 5832 True 743.428571 1755 88.945429 766 6803 7 chr3A.!!$R1 6037
4 TraesCS3B01G155700 chr2B 91031724 91032378 654 True 846.000000 846 89.970000 42 699 1 chr2B.!!$R2 657
5 TraesCS3B01G155700 chr7A 55014652 55015350 698 True 610.000000 610 82.403000 1 699 1 chr7A.!!$R1 698
6 TraesCS3B01G155700 chr7A 495564257 495564955 698 False 610.000000 610 82.403000 1 699 1 chr7A.!!$F2 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 642 0.108585 GCCATCTGGGAAATAGCGGA 59.891 55.000 0.00 0.00 40.01 5.54 F
750 751 0.179059 CAAGTTGGGGCCAAACAACC 60.179 55.000 25.35 9.55 46.07 3.77 F
1531 1574 0.666274 TGCGAATCGTGTGAGGTGTC 60.666 55.000 4.07 0.00 0.00 3.67 F
2695 2926 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 F
3305 3548 0.329596 AGAGAAGAACACATGGCCCC 59.670 55.000 0.00 0.00 0.00 5.80 F
3867 4126 1.543429 CCAAAGCTCAGAACGGGAAGT 60.543 52.381 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2176 2300 0.107410 ACGGACTGAACAAGGCAACA 60.107 50.000 0.00 0.0 34.40 3.33 R
2676 2907 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.0 46.06 2.73 R
3216 3455 0.033503 TGTCAGTAGGGAGGCGATCA 60.034 55.000 0.00 0.0 0.00 2.92 R
3537 3780 1.200020 GTGCAAGAATTCAGAACCCCG 59.800 52.381 8.44 0.0 0.00 5.73 R
4246 4625 1.342555 TGGCTACAAAATCGTCGTCG 58.657 50.000 0.00 0.0 38.55 5.12 R
5829 6341 0.320771 GGAAAGAGACGGCTTGCTCA 60.321 55.000 0.00 0.0 33.62 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.581934 TCAGCTCGACCACAAAACAG 58.418 50.000 0.00 0.00 0.00 3.16
34 35 4.131596 GACCACAAAACAGGCACTTAGTA 58.868 43.478 0.00 0.00 34.60 1.82
37 38 4.142902 CCACAAAACAGGCACTTAGTATCG 60.143 45.833 0.00 0.00 34.60 2.92
44 45 2.628657 AGGCACTTAGTATCGGTGATCC 59.371 50.000 0.00 0.00 27.25 3.36
76 77 1.339610 CTTGCCACATTGGTTCGGAAA 59.660 47.619 0.00 0.00 40.46 3.13
136 137 2.847234 TTGGGAGGGCACGACAGT 60.847 61.111 0.00 0.00 0.00 3.55
142 143 0.321653 GAGGGCACGACAGTTTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
145 146 1.338769 GGGCACGACAGTTTCCATAGT 60.339 52.381 0.00 0.00 0.00 2.12
168 169 3.895232 TTTCCAGGAGTCATCACTAGC 57.105 47.619 0.00 0.00 30.63 3.42
186 187 2.113986 ACTGTCCAGGTTGCCAGC 59.886 61.111 0.00 0.00 0.00 4.85
199 200 2.697761 GCCAGCCACATGTGAGCTG 61.698 63.158 36.86 36.86 45.68 4.24
207 208 1.451567 CATGTGAGCTGCCTCCCAG 60.452 63.158 0.00 0.00 44.67 4.45
313 314 0.916086 ATGCAATGAAGTCCCGGGTA 59.084 50.000 22.86 4.13 0.00 3.69
352 353 3.557577 TGGAAAATGTGCTTGACATCG 57.442 42.857 0.00 0.00 45.12 3.84
361 362 1.375396 CTTGACATCGTCGGGCCAA 60.375 57.895 4.39 0.00 34.95 4.52
392 393 4.335647 CAAGCTGCCCGTCCCAGT 62.336 66.667 0.00 0.00 32.93 4.00
395 396 2.597510 GCTGCCCGTCCCAGTTTT 60.598 61.111 0.00 0.00 32.93 2.43
402 403 0.535102 CCGTCCCAGTTTTCAGTGCT 60.535 55.000 0.00 0.00 0.00 4.40
403 404 1.308998 CGTCCCAGTTTTCAGTGCTT 58.691 50.000 0.00 0.00 0.00 3.91
412 413 4.921515 CAGTTTTCAGTGCTTGGATCAATG 59.078 41.667 0.00 0.00 0.00 2.82
489 490 1.378378 ATGGACGTGGCAACCATGA 59.622 52.632 17.24 0.00 42.73 3.07
493 494 1.453155 GACGTGGCAACCATGAATCT 58.547 50.000 12.68 0.00 42.73 2.40
503 504 4.178540 CAACCATGAATCTGACCAAATGC 58.821 43.478 0.00 0.00 0.00 3.56
511 512 3.213206 TCTGACCAAATGCTGACTTGT 57.787 42.857 0.00 0.00 0.00 3.16
586 587 6.238103 CGTGCAATAAACTTCTCCACGAATAT 60.238 38.462 4.46 0.00 45.00 1.28
605 606 1.119684 TGAGATACCATCACGGGGTG 58.880 55.000 0.00 0.00 39.48 4.61
607 608 1.485066 GAGATACCATCACGGGGTGTT 59.515 52.381 0.00 0.00 39.48 3.32
628 629 1.207791 CCTCCAGTAGGTTGCCATCT 58.792 55.000 0.00 0.00 40.94 2.90
641 642 0.108585 GCCATCTGGGAAATAGCGGA 59.891 55.000 0.00 0.00 40.01 5.54
654 655 1.480789 TAGCGGACCTGCAAGATACA 58.519 50.000 10.28 0.00 34.07 2.29
674 675 2.279517 CACATAGCGACTCCGGGC 60.280 66.667 0.00 0.00 36.06 6.13
681 682 2.967397 CGACTCCGGGCACTGTAA 59.033 61.111 0.00 0.00 0.00 2.41
685 686 1.079127 CTCCGGGCACTGTAACAGG 60.079 63.158 0.00 0.00 35.51 4.00
694 695 2.080693 CACTGTAACAGGCGCCAAATA 58.919 47.619 31.54 15.11 35.51 1.40
701 702 3.537388 GGCGCCAAATATGCCCTT 58.463 55.556 24.80 0.00 43.06 3.95
702 703 2.727103 GGCGCCAAATATGCCCTTA 58.273 52.632 24.80 0.00 43.06 2.69
703 704 0.313987 GGCGCCAAATATGCCCTTAC 59.686 55.000 24.80 0.00 43.06 2.34
704 705 1.318576 GCGCCAAATATGCCCTTACT 58.681 50.000 0.00 0.00 0.00 2.24
705 706 1.681264 GCGCCAAATATGCCCTTACTT 59.319 47.619 0.00 0.00 0.00 2.24
706 707 2.100749 GCGCCAAATATGCCCTTACTTT 59.899 45.455 0.00 0.00 0.00 2.66
707 708 3.705604 CGCCAAATATGCCCTTACTTTG 58.294 45.455 0.00 0.00 0.00 2.77
708 709 3.380004 CGCCAAATATGCCCTTACTTTGA 59.620 43.478 0.00 0.00 0.00 2.69
709 710 4.037923 CGCCAAATATGCCCTTACTTTGAT 59.962 41.667 0.00 0.00 0.00 2.57
710 711 5.532557 GCCAAATATGCCCTTACTTTGATC 58.467 41.667 0.00 0.00 0.00 2.92
711 712 5.068987 GCCAAATATGCCCTTACTTTGATCA 59.931 40.000 0.00 0.00 0.00 2.92
712 713 6.239402 GCCAAATATGCCCTTACTTTGATCAT 60.239 38.462 0.00 0.00 0.00 2.45
713 714 7.149973 CCAAATATGCCCTTACTTTGATCATG 58.850 38.462 0.00 0.00 0.00 3.07
714 715 5.972107 ATATGCCCTTACTTTGATCATGC 57.028 39.130 0.00 0.00 0.00 4.06
715 716 2.378038 TGCCCTTACTTTGATCATGCC 58.622 47.619 0.00 0.00 0.00 4.40
716 717 2.291475 TGCCCTTACTTTGATCATGCCA 60.291 45.455 0.00 0.00 0.00 4.92
717 718 2.760092 GCCCTTACTTTGATCATGCCAA 59.240 45.455 0.00 0.00 0.00 4.52
718 719 3.195396 GCCCTTACTTTGATCATGCCAAA 59.805 43.478 0.00 11.01 33.12 3.28
719 720 4.322650 GCCCTTACTTTGATCATGCCAAAA 60.323 41.667 0.00 1.94 33.68 2.44
720 721 5.627503 GCCCTTACTTTGATCATGCCAAAAT 60.628 40.000 0.00 6.94 33.68 1.82
721 722 6.408869 CCCTTACTTTGATCATGCCAAAATT 58.591 36.000 0.00 6.85 33.68 1.82
722 723 6.880529 CCCTTACTTTGATCATGCCAAAATTT 59.119 34.615 0.00 0.00 33.68 1.82
723 724 7.391275 CCCTTACTTTGATCATGCCAAAATTTT 59.609 33.333 0.00 0.00 33.68 1.82
724 725 8.231837 CCTTACTTTGATCATGCCAAAATTTTG 58.768 33.333 21.65 21.65 37.90 2.44
738 739 5.571277 CAAAATTTTGGTTGAGCAAGTTGG 58.429 37.500 21.00 0.00 34.59 3.77
739 740 2.977772 TTTTGGTTGAGCAAGTTGGG 57.022 45.000 4.75 0.00 0.00 4.12
740 741 1.118838 TTTGGTTGAGCAAGTTGGGG 58.881 50.000 4.75 0.00 0.00 4.96
741 742 1.398958 TTGGTTGAGCAAGTTGGGGC 61.399 55.000 4.75 0.00 0.00 5.80
742 743 2.574018 GGTTGAGCAAGTTGGGGCC 61.574 63.158 4.75 0.00 0.00 5.80
743 744 1.832167 GTTGAGCAAGTTGGGGCCA 60.832 57.895 4.39 0.00 0.00 5.36
744 745 1.075674 TTGAGCAAGTTGGGGCCAA 60.076 52.632 4.39 0.00 0.00 4.52
745 746 0.689080 TTGAGCAAGTTGGGGCCAAA 60.689 50.000 4.39 0.00 37.70 3.28
746 747 1.367471 GAGCAAGTTGGGGCCAAAC 59.633 57.895 16.42 16.42 37.70 2.93
747 748 1.382420 AGCAAGTTGGGGCCAAACA 60.382 52.632 25.35 1.12 37.70 2.83
748 749 0.980231 AGCAAGTTGGGGCCAAACAA 60.980 50.000 25.35 8.10 37.70 2.83
749 750 0.813610 GCAAGTTGGGGCCAAACAAC 60.814 55.000 25.35 22.35 45.45 3.32
750 751 0.179059 CAAGTTGGGGCCAAACAACC 60.179 55.000 25.35 9.55 46.07 3.77
751 752 1.341913 AAGTTGGGGCCAAACAACCC 61.342 55.000 25.35 8.89 46.07 4.11
755 756 4.957057 GGGCCAAACAACCCCTAA 57.043 55.556 4.39 0.00 40.56 2.69
756 757 3.151048 GGGCCAAACAACCCCTAAA 57.849 52.632 4.39 0.00 40.56 1.85
757 758 1.425694 GGGCCAAACAACCCCTAAAA 58.574 50.000 4.39 0.00 40.56 1.52
758 759 1.769465 GGGCCAAACAACCCCTAAAAA 59.231 47.619 4.39 0.00 40.56 1.94
822 823 2.125269 GCCGTCGTACTGCCCATT 60.125 61.111 0.00 0.00 0.00 3.16
955 965 1.389555 CCCAATTCGAAACCCTAGCC 58.610 55.000 0.00 0.00 0.00 3.93
1073 1083 2.813908 CCAGCTCCGCGTGGTAAC 60.814 66.667 16.01 5.74 36.30 2.50
1074 1084 2.261671 CAGCTCCGCGTGGTAACT 59.738 61.111 16.01 8.10 36.30 2.24
1479 1522 4.497340 CGCTGGTTGTATTGTTCTTGTTGT 60.497 41.667 0.00 0.00 0.00 3.32
1517 1560 3.745799 TGATTTGAGTTAGGGTTGCGAA 58.254 40.909 0.00 0.00 0.00 4.70
1531 1574 0.666274 TGCGAATCGTGTGAGGTGTC 60.666 55.000 4.07 0.00 0.00 3.67
1546 1589 1.270893 GGTGTCCCTTCTGGTGACTTC 60.271 57.143 0.00 0.00 35.75 3.01
1597 1641 6.650120 ACTTCTGGGTCAACGTATGATTATT 58.350 36.000 0.00 0.00 40.97 1.40
1609 1653 8.679100 CAACGTATGATTATTTGGGGAGTTTTA 58.321 33.333 0.00 0.00 0.00 1.52
1628 1672 9.504710 GAGTTTTAGAAAGAAAAGGAAACAGAC 57.495 33.333 0.00 0.00 0.00 3.51
1661 1705 2.094752 GTGGTGATAAGCCGTGCATTTT 60.095 45.455 0.00 0.00 0.00 1.82
1665 1725 5.590663 TGGTGATAAGCCGTGCATTTTATTA 59.409 36.000 0.00 0.00 0.00 0.98
1747 1811 6.438620 AGAAATAAGCCTGGATTCCTTTGAT 58.561 36.000 0.00 0.00 0.00 2.57
1838 1904 9.010029 AGAAACGAAAATATTCTATTGTGTGGT 57.990 29.630 0.00 0.00 31.88 4.16
2096 2220 3.181471 CCACTCAAGCTCCAGACGATTAT 60.181 47.826 0.00 0.00 0.00 1.28
2155 2279 7.341256 TCACGTACTCCCTCTGTAAAGAAATAT 59.659 37.037 0.00 0.00 0.00 1.28
2465 2615 8.311109 AGAACAATCCCCAAAATTATTGTGTAC 58.689 33.333 3.42 0.00 40.66 2.90
2626 2850 9.955208 TTCTGTTTATGATTAATGTGATCATGC 57.045 29.630 0.00 0.00 42.54 4.06
2644 2868 4.216902 TCATGCTTGTTGGAGTTCAGAATG 59.783 41.667 0.00 0.00 37.54 2.67
2674 2905 5.364157 AGATTATTTACCTCTCCGCACTCTT 59.636 40.000 0.00 0.00 0.00 2.85
2675 2906 3.983044 ATTTACCTCTCCGCACTCTTT 57.017 42.857 0.00 0.00 0.00 2.52
2676 2907 6.534475 TTATTTACCTCTCCGCACTCTTTA 57.466 37.500 0.00 0.00 0.00 1.85
2677 2908 4.451629 TTTACCTCTCCGCACTCTTTAG 57.548 45.455 0.00 0.00 0.00 1.85
2678 2909 1.926108 ACCTCTCCGCACTCTTTAGT 58.074 50.000 0.00 0.00 35.91 2.24
2679 2910 3.083122 ACCTCTCCGCACTCTTTAGTA 57.917 47.619 0.00 0.00 33.48 1.82
2680 2911 2.754002 ACCTCTCCGCACTCTTTAGTAC 59.246 50.000 0.00 0.00 33.48 2.73
2681 2912 3.018149 CCTCTCCGCACTCTTTAGTACT 58.982 50.000 0.00 0.00 33.48 2.73
2682 2913 3.065648 CCTCTCCGCACTCTTTAGTACTC 59.934 52.174 0.00 0.00 33.48 2.59
2683 2914 3.015327 TCTCCGCACTCTTTAGTACTCC 58.985 50.000 0.00 0.00 33.48 3.85
2684 2915 2.097825 TCCGCACTCTTTAGTACTCCC 58.902 52.381 0.00 0.00 33.48 4.30
2685 2916 2.100989 CCGCACTCTTTAGTACTCCCT 58.899 52.381 0.00 0.00 33.48 4.20
2686 2917 2.099427 CCGCACTCTTTAGTACTCCCTC 59.901 54.545 0.00 0.00 33.48 4.30
2687 2918 2.099427 CGCACTCTTTAGTACTCCCTCC 59.901 54.545 0.00 0.00 33.48 4.30
2688 2919 2.099427 GCACTCTTTAGTACTCCCTCCG 59.901 54.545 0.00 0.00 33.48 4.63
2689 2920 3.354467 CACTCTTTAGTACTCCCTCCGT 58.646 50.000 0.00 0.00 33.48 4.69
2690 2921 3.762823 CACTCTTTAGTACTCCCTCCGTT 59.237 47.826 0.00 0.00 33.48 4.44
2691 2922 4.015764 ACTCTTTAGTACTCCCTCCGTTC 58.984 47.826 0.00 0.00 32.84 3.95
2692 2923 3.012518 TCTTTAGTACTCCCTCCGTTCG 58.987 50.000 0.00 0.00 0.00 3.95
2693 2924 1.755179 TTAGTACTCCCTCCGTTCGG 58.245 55.000 0.00 4.74 0.00 4.30
2694 2925 0.911769 TAGTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
2695 2926 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2696 2927 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2697 2928 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2698 2929 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2699 2930 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2700 2931 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2701 2932 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2702 2933 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2703 2934 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2704 2935 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2705 2936 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2706 2937 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2707 2938 2.182825 CGTTCGGAATTACTCGTCCAG 58.817 52.381 0.00 0.00 33.10 3.86
2708 2939 2.159476 CGTTCGGAATTACTCGTCCAGA 60.159 50.000 0.00 0.00 33.10 3.86
2709 2940 3.671433 CGTTCGGAATTACTCGTCCAGAA 60.671 47.826 0.00 0.00 33.10 3.02
2710 2941 4.240096 GTTCGGAATTACTCGTCCAGAAA 58.760 43.478 0.00 0.00 32.32 2.52
2711 2942 4.524316 TCGGAATTACTCGTCCAGAAAA 57.476 40.909 0.00 0.00 33.10 2.29
2712 2943 5.080969 TCGGAATTACTCGTCCAGAAAAT 57.919 39.130 0.00 0.00 33.10 1.82
2713 2944 4.868171 TCGGAATTACTCGTCCAGAAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2714 2945 4.868171 CGGAATTACTCGTCCAGAAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2715 2946 5.350365 CGGAATTACTCGTCCAGAAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2716 2947 6.037172 CGGAATTACTCGTCCAGAAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
2717 2948 7.189512 GGAATTACTCGTCCAGAAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2718 2949 7.148239 GGAATTACTCGTCCAGAAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
2719 2950 8.786826 AATTACTCGTCCAGAAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2720 2951 8.964476 ATTACTCGTCCAGAAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
2721 2952 6.910536 ACTCGTCCAGAAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
2722 2953 6.644347 ACTCGTCCAGAAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
2723 2954 7.782049 ACTCGTCCAGAAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
2724 2955 7.923344 ACTCGTCCAGAAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
2725 2956 8.007405 TCGTCCAGAAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
2726 2957 8.642432 TCGTCCAGAAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
2727 2958 8.706936 CGTCCAGAAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
2728 2959 9.553064 GTCCAGAAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
2759 2990 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
2760 2991 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
2761 2992 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
2762 2993 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
2763 2994 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
2764 2995 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
2765 2996 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
2766 2997 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
2769 3000 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
2770 3001 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
2771 3002 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
2772 3003 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
2773 3004 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
2774 3005 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
2775 3006 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
2776 3007 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
2777 3008 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
2778 3009 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
2779 3010 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2780 3011 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2945 3176 4.952071 TTGGAATCCTGAATTTGTGCAA 57.048 36.364 0.00 0.00 0.00 4.08
3024 3255 4.714802 GGTATTGCTGATTTTACCCCCTTT 59.285 41.667 0.00 0.00 0.00 3.11
3032 3263 2.095604 TTTACCCCCTTTGCTTTGCT 57.904 45.000 0.00 0.00 0.00 3.91
3083 3322 4.254402 AGGGTTTGTAAGAGAAGACGAC 57.746 45.455 0.00 0.00 0.00 4.34
3094 3333 9.321562 TGTAAGAGAAGACGACTAAATGTTTTT 57.678 29.630 0.00 0.00 0.00 1.94
3095 3334 9.582223 GTAAGAGAAGACGACTAAATGTTTTTG 57.418 33.333 0.00 0.00 0.00 2.44
3096 3335 7.787725 AGAGAAGACGACTAAATGTTTTTGT 57.212 32.000 0.00 0.00 0.00 2.83
3097 3336 8.209917 AGAGAAGACGACTAAATGTTTTTGTT 57.790 30.769 0.00 0.00 0.00 2.83
3098 3337 8.122952 AGAGAAGACGACTAAATGTTTTTGTTG 58.877 33.333 0.00 1.82 0.00 3.33
3099 3338 7.981142 AGAAGACGACTAAATGTTTTTGTTGA 58.019 30.769 8.23 0.00 0.00 3.18
3100 3339 8.455682 AGAAGACGACTAAATGTTTTTGTTGAA 58.544 29.630 8.23 0.00 0.00 2.69
3101 3340 7.964545 AGACGACTAAATGTTTTTGTTGAAC 57.035 32.000 8.23 0.00 0.00 3.18
3102 3341 7.531716 AGACGACTAAATGTTTTTGTTGAACA 58.468 30.769 0.00 0.00 40.86 3.18
3103 3342 8.024285 AGACGACTAAATGTTTTTGTTGAACAA 58.976 29.630 6.66 6.66 40.10 2.83
3104 3343 8.696410 ACGACTAAATGTTTTTGTTGAACAAT 57.304 26.923 11.97 0.00 40.10 2.71
3105 3344 8.803799 ACGACTAAATGTTTTTGTTGAACAATC 58.196 29.630 11.97 6.53 40.10 2.67
3106 3345 8.802856 CGACTAAATGTTTTTGTTGAACAATCA 58.197 29.630 11.97 11.54 40.10 2.57
3107 3346 9.900264 GACTAAATGTTTTTGTTGAACAATCAC 57.100 29.630 11.97 11.55 40.10 3.06
3108 3347 9.651913 ACTAAATGTTTTTGTTGAACAATCACT 57.348 25.926 11.97 0.00 40.10 3.41
3111 3350 9.609950 AAATGTTTTTGTTGAACAATCACTTTG 57.390 25.926 11.97 0.00 40.10 2.77
3112 3351 7.126726 TGTTTTTGTTGAACAATCACTTTGG 57.873 32.000 11.97 0.00 38.00 3.28
3113 3352 6.148480 TGTTTTTGTTGAACAATCACTTTGGG 59.852 34.615 11.97 0.00 38.00 4.12
3114 3353 4.399004 TTGTTGAACAATCACTTTGGGG 57.601 40.909 6.66 0.00 39.80 4.96
3115 3354 2.697751 TGTTGAACAATCACTTTGGGGG 59.302 45.455 0.00 0.00 39.80 5.40
3165 3404 3.756082 ATTACTCAAATGCCCAAGGGA 57.244 42.857 9.92 0.00 37.50 4.20
3180 3419 4.040461 CCCAAGGGACGAGTTACATCATAT 59.960 45.833 0.00 0.00 37.50 1.78
3216 3455 1.424638 AGGTATAGGCGCCAAGACAT 58.575 50.000 31.54 17.44 0.00 3.06
3218 3457 1.070134 GGTATAGGCGCCAAGACATGA 59.930 52.381 31.54 2.84 0.00 3.07
3219 3458 2.289694 GGTATAGGCGCCAAGACATGAT 60.290 50.000 31.54 6.76 0.00 2.45
3269 3508 8.942338 TGTTATTAGTATGGAATGTGTGAGAC 57.058 34.615 0.00 0.00 0.00 3.36
3295 3538 6.127026 ACAGGTGGGATATGTTAGAGAAGAAC 60.127 42.308 0.00 0.00 0.00 3.01
3305 3548 0.329596 AGAGAAGAACACATGGCCCC 59.670 55.000 0.00 0.00 0.00 5.80
3317 3560 2.600470 GGCCCCGTTCTTTTGGCT 60.600 61.111 0.00 0.00 43.50 4.75
3325 3568 3.506067 CCCGTTCTTTTGGCTGATTTAGT 59.494 43.478 0.00 0.00 0.00 2.24
3363 3606 9.470399 AAATAAATACGGGTTTAAGAATCTGGT 57.530 29.630 0.00 0.00 0.00 4.00
3414 3657 3.077484 TCTGGGAGAATCAGCCAAAAG 57.923 47.619 0.00 0.00 36.25 2.27
3701 3960 4.202090 GCTCCAAAAGGGCAATCTTCTATG 60.202 45.833 0.00 0.00 36.21 2.23
3750 4009 5.391310 CCATCCGATCAAGTGAAAGAAACAG 60.391 44.000 0.00 0.00 0.00 3.16
3867 4126 1.543429 CCAAAGCTCAGAACGGGAAGT 60.543 52.381 0.00 0.00 0.00 3.01
4197 4576 2.203209 GCGGGCCTCTAATGGTGG 60.203 66.667 0.84 0.00 0.00 4.61
4246 4625 7.982224 TCTTTGATTGTTCAGATGATGATGAC 58.018 34.615 0.00 0.00 37.89 3.06
4292 4674 0.823356 TCCAGAGCCACCAAAACAGC 60.823 55.000 0.00 0.00 0.00 4.40
4378 4760 2.656560 AACAGGATACAGTCAGCGAC 57.343 50.000 0.00 1.15 33.79 5.19
4385 4767 2.495409 TACAGTCAGCGACGTGAAAA 57.505 45.000 0.00 0.00 37.67 2.29
4392 4774 1.003972 CAGCGACGTGAAAAGCTTCAA 60.004 47.619 0.00 0.00 43.18 2.69
4462 4847 0.394352 ATGGCAACGGTTCTGGGATC 60.394 55.000 0.00 0.00 42.51 3.36
4495 4880 2.555732 AGGCCAATGATCCACCAATT 57.444 45.000 5.01 0.00 0.00 2.32
4561 4946 4.529377 TCGCCTAAAAGAAGGAAGGTCTTA 59.471 41.667 0.00 0.00 39.15 2.10
4650 5035 5.183713 TGCTTATATCATTTGGGCATGCTAC 59.816 40.000 18.92 11.70 0.00 3.58
4693 5172 9.757227 GCTTATATCATTCACTTAGTCTCACTT 57.243 33.333 0.00 0.00 0.00 3.16
4860 5357 9.262472 GTAAGCAACTTGTCTTATTTATGAACG 57.738 33.333 8.15 0.00 0.00 3.95
5056 5555 7.953158 TGCATCATTAGCTGTTCTAGTTATC 57.047 36.000 0.00 0.00 0.00 1.75
5060 5560 9.202273 CATCATTAGCTGTTCTAGTTATCCTTC 57.798 37.037 0.00 0.00 0.00 3.46
5153 5654 3.314693 AGTAACTGAGGTTGTCTGGGAA 58.685 45.455 0.00 0.00 36.92 3.97
5221 5722 5.950544 ACTGATGCCACTAACAGGTAATA 57.049 39.130 0.00 0.00 35.08 0.98
5339 5846 2.172082 AGTTATCTTTAGGAACCGCCCC 59.828 50.000 0.00 0.00 37.37 5.80
5417 5924 1.299541 AGTTTCGATTATGCCGCTGG 58.700 50.000 0.00 0.00 0.00 4.85
5526 6034 8.908786 AATAAATATGTCAGATGTCGGATGTT 57.091 30.769 0.00 0.00 0.00 2.71
5599 6107 4.866508 TCGAGTCATTGTTAACCTGAGT 57.133 40.909 12.85 12.85 0.00 3.41
5640 6148 4.717877 TCATGTCACTGACAAATCAACCT 58.282 39.130 15.80 0.00 45.96 3.50
5702 6211 0.740149 CCAGCAGCAAACACTGACAA 59.260 50.000 0.00 0.00 40.25 3.18
5817 6329 3.971971 AGGTATAATAGCCCGTGTCCTTT 59.028 43.478 0.00 0.00 0.00 3.11
5824 6336 1.026718 GCCCGTGTCCTTTCATCTGG 61.027 60.000 0.00 0.00 0.00 3.86
5829 6341 3.338249 CGTGTCCTTTCATCTGGTGATT 58.662 45.455 0.00 0.00 36.54 2.57
5830 6342 3.125829 CGTGTCCTTTCATCTGGTGATTG 59.874 47.826 0.00 0.00 36.54 2.67
5834 6346 3.009363 TCCTTTCATCTGGTGATTGAGCA 59.991 43.478 0.00 0.00 36.54 4.26
5836 6348 4.142447 CCTTTCATCTGGTGATTGAGCAAG 60.142 45.833 0.00 0.00 36.54 4.01
5837 6349 2.362736 TCATCTGGTGATTGAGCAAGC 58.637 47.619 0.00 0.00 0.00 4.01
5838 6350 1.404391 CATCTGGTGATTGAGCAAGCC 59.596 52.381 0.00 0.00 0.00 4.35
5964 6490 7.504924 TTAAGTAAGCTGTAGCATTTTGTGT 57.495 32.000 6.65 0.00 45.16 3.72
5976 6502 6.935741 AGCATTTTGTGTTTGTAGTAGTCA 57.064 33.333 0.00 0.00 0.00 3.41
5997 6528 3.190535 CAGTATTGGTTTGTTCTTCCCGG 59.809 47.826 0.00 0.00 0.00 5.73
6029 6560 2.531206 AGACGAGCTAAAATCACGCTC 58.469 47.619 0.00 0.00 44.98 5.03
6054 6590 2.103263 GGTCGGTAGGAATCTTGCTGAT 59.897 50.000 0.00 0.00 36.89 2.90
6098 6639 7.869937 CTGTTTCAGAATTCAGAGTGTTCTCTA 59.130 37.037 8.44 0.00 40.20 2.43
6116 6657 7.662258 TGTTCTCTAGCTGTACATACTATCTCC 59.338 40.741 0.00 0.00 0.00 3.71
6131 6672 3.777106 ATCTCCTGTCTTTCTGCACAA 57.223 42.857 0.00 0.00 0.00 3.33
6153 6694 0.034059 ACGTTGCTCTCCTGAGGTTG 59.966 55.000 0.00 0.00 40.53 3.77
6250 6791 0.107508 AGATACGCAATGCACCTGCT 60.108 50.000 17.82 9.38 42.66 4.24
6251 6792 0.028505 GATACGCAATGCACCTGCTG 59.971 55.000 17.82 13.92 42.66 4.41
6286 6827 2.168521 CACAGTATGGTCGGGTTCAGAT 59.831 50.000 0.00 0.00 43.62 2.90
6294 6835 7.878127 AGTATGGTCGGGTTCAGATTAAATATG 59.122 37.037 0.00 0.00 0.00 1.78
6379 6920 1.859427 CTGCTGCTGCACGTTCCATT 61.859 55.000 14.93 0.00 45.31 3.16
6383 6924 1.535028 CTGCTGCACGTTCCATTTGTA 59.465 47.619 0.00 0.00 0.00 2.41
6393 6942 3.364565 CGTTCCATTTGTAGTTGGGTTCG 60.365 47.826 0.00 0.00 33.62 3.95
6408 6957 1.446099 TTCGCCTTAGCTGACGCAG 60.446 57.895 0.00 2.92 39.10 5.18
6420 6969 0.391228 TGACGCAGCAAGTCAACCTA 59.609 50.000 6.48 0.00 44.56 3.08
6569 7136 2.983136 CGTTATGATCCTGTCGCATCTC 59.017 50.000 0.00 0.00 0.00 2.75
6645 7216 1.205655 TCTGAAGATCTCCGCTGTTGG 59.794 52.381 0.00 0.00 0.00 3.77
6775 7354 1.925415 GCTGTCATGATTGCGCCACA 61.925 55.000 4.18 2.37 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.166531 GCCTGTTTTGTGGTCGAGCT 61.167 55.000 16.64 0.00 0.00 4.09
24 25 3.027974 GGATCACCGATACTAAGTGCC 57.972 52.381 0.00 0.00 0.00 5.01
44 45 2.193248 GGCAAGGAAGGGGATCCG 59.807 66.667 5.45 0.00 44.60 4.18
124 125 0.981183 TATGGAAACTGTCGTGCCCT 59.019 50.000 0.00 0.00 0.00 5.19
136 137 5.309543 TGACTCCTGGAAAAGACTATGGAAA 59.690 40.000 0.00 0.00 0.00 3.13
142 143 5.087323 AGTGATGACTCCTGGAAAAGACTA 58.913 41.667 0.00 0.00 0.00 2.59
145 146 4.081420 GCTAGTGATGACTCCTGGAAAAGA 60.081 45.833 0.00 0.00 33.21 2.52
168 169 2.263741 GCTGGCAACCTGGACAGTG 61.264 63.158 0.00 0.00 33.62 3.66
186 187 1.748122 GGAGGCAGCTCACATGTGG 60.748 63.158 25.16 16.47 0.00 4.17
199 200 3.883549 GATGGAGGGCTGGGAGGC 61.884 72.222 0.00 0.00 40.51 4.70
207 208 2.225467 GTATGAAGCAAGATGGAGGGC 58.775 52.381 0.00 0.00 0.00 5.19
247 248 1.337071 TCCGTCAAGAGCGCCTATAAG 59.663 52.381 2.29 0.00 0.00 1.73
250 251 1.038130 ACTCCGTCAAGAGCGCCTAT 61.038 55.000 2.29 0.00 37.39 2.57
328 329 5.061311 CGATGTCAAGCACATTTTCCAAATC 59.939 40.000 0.00 0.00 46.53 2.17
336 337 1.464608 CCGACGATGTCAAGCACATTT 59.535 47.619 0.00 0.00 46.53 2.32
352 353 2.479560 GCATGATACTTTTTGGCCCGAC 60.480 50.000 0.00 0.00 0.00 4.79
392 393 4.219070 CCTCATTGATCCAAGCACTGAAAA 59.781 41.667 0.00 0.00 0.00 2.29
395 396 2.306805 ACCTCATTGATCCAAGCACTGA 59.693 45.455 0.00 0.00 0.00 3.41
489 490 4.022589 CACAAGTCAGCATTTGGTCAGATT 60.023 41.667 0.00 0.00 0.00 2.40
493 494 2.358582 CACACAAGTCAGCATTTGGTCA 59.641 45.455 0.00 0.00 0.00 4.02
568 569 8.358148 GGTATCTCATATTCGTGGAGAAGTTTA 58.642 37.037 0.00 0.00 42.92 2.01
586 587 1.119684 CACCCCGTGATGGTATCTCA 58.880 55.000 0.00 0.00 35.23 3.27
619 620 1.334869 CGCTATTTCCCAGATGGCAAC 59.665 52.381 0.00 0.00 31.27 4.17
628 629 1.223487 GCAGGTCCGCTATTTCCCA 59.777 57.895 0.00 0.00 0.00 4.37
641 642 2.566833 TGTGCTTGTATCTTGCAGGT 57.433 45.000 0.00 0.00 37.39 4.00
654 655 1.141881 CCGGAGTCGCTATGTGCTT 59.858 57.895 0.00 0.00 40.11 3.91
674 675 0.881118 ATTTGGCGCCTGTTACAGTG 59.119 50.000 29.70 4.67 0.00 3.66
681 682 3.525221 GGCATATTTGGCGCCTGT 58.475 55.556 29.70 15.71 42.78 4.00
694 695 2.961062 GGCATGATCAAAGTAAGGGCAT 59.039 45.455 0.00 0.00 0.00 4.40
715 716 5.448904 CCCAACTTGCTCAACCAAAATTTTG 60.449 40.000 21.65 21.65 37.90 2.44
716 717 4.639755 CCCAACTTGCTCAACCAAAATTTT 59.360 37.500 0.00 0.00 0.00 1.82
717 718 4.198530 CCCAACTTGCTCAACCAAAATTT 58.801 39.130 0.00 0.00 0.00 1.82
718 719 3.433456 CCCCAACTTGCTCAACCAAAATT 60.433 43.478 0.00 0.00 0.00 1.82
719 720 2.104622 CCCCAACTTGCTCAACCAAAAT 59.895 45.455 0.00 0.00 0.00 1.82
720 721 1.484240 CCCCAACTTGCTCAACCAAAA 59.516 47.619 0.00 0.00 0.00 2.44
721 722 1.118838 CCCCAACTTGCTCAACCAAA 58.881 50.000 0.00 0.00 0.00 3.28
722 723 1.398958 GCCCCAACTTGCTCAACCAA 61.399 55.000 0.00 0.00 0.00 3.67
723 724 1.832167 GCCCCAACTTGCTCAACCA 60.832 57.895 0.00 0.00 0.00 3.67
724 725 2.574018 GGCCCCAACTTGCTCAACC 61.574 63.158 0.00 0.00 0.00 3.77
725 726 1.398958 TTGGCCCCAACTTGCTCAAC 61.399 55.000 0.00 0.00 0.00 3.18
726 727 0.689080 TTTGGCCCCAACTTGCTCAA 60.689 50.000 0.00 0.00 35.46 3.02
727 728 1.075674 TTTGGCCCCAACTTGCTCA 60.076 52.632 0.00 0.00 35.46 4.26
728 729 1.367471 GTTTGGCCCCAACTTGCTC 59.633 57.895 0.00 0.00 35.46 4.26
729 730 0.980231 TTGTTTGGCCCCAACTTGCT 60.980 50.000 14.37 0.00 35.46 3.91
730 731 0.813610 GTTGTTTGGCCCCAACTTGC 60.814 55.000 17.95 5.82 38.30 4.01
731 732 0.179059 GGTTGTTTGGCCCCAACTTG 60.179 55.000 22.01 0.00 40.56 3.16
732 733 1.341913 GGGTTGTTTGGCCCCAACTT 61.342 55.000 22.01 0.00 40.56 2.66
733 734 1.764454 GGGTTGTTTGGCCCCAACT 60.764 57.895 22.01 0.00 40.56 3.16
734 735 2.825982 GGGTTGTTTGGCCCCAAC 59.174 61.111 17.30 17.30 38.99 3.77
738 739 1.425694 TTTTAGGGGTTGTTTGGCCC 58.574 50.000 0.00 0.00 44.09 5.80
769 770 1.509703 GAAAGAAAACCCGCTCGAGT 58.490 50.000 15.13 0.00 0.00 4.18
780 781 3.733684 GCAGTTCACTTGCCGAAAGAAAA 60.734 43.478 5.01 0.00 39.38 2.29
813 814 1.852157 TGAGGGTCCAATGGGCAGT 60.852 57.895 6.11 0.00 0.00 4.40
815 816 2.763215 GTGAGGGTCCAATGGGCA 59.237 61.111 6.11 0.00 0.00 5.36
816 817 2.043953 GGTGAGGGTCCAATGGGC 60.044 66.667 0.00 0.00 0.00 5.36
820 821 3.015145 CCCGGGTGAGGGTCCAAT 61.015 66.667 14.18 0.00 46.38 3.16
936 946 1.340600 TGGCTAGGGTTTCGAATTGGG 60.341 52.381 0.00 0.00 0.00 4.12
955 965 1.244019 CGGAAGGCTTTGGAACCCTG 61.244 60.000 0.00 0.00 0.00 4.45
1349 1359 1.946650 GTCATAGCGGCGACTGAGC 60.947 63.158 12.98 0.00 0.00 4.26
1350 1360 1.655654 CGTCATAGCGGCGACTGAG 60.656 63.158 12.98 4.91 0.00 3.35
1429 1472 3.991536 GAACTCGCGTCTCCCCTGC 62.992 68.421 5.77 0.00 0.00 4.85
1444 1487 1.200020 CAACCAGCGGAATCCAAGAAC 59.800 52.381 0.00 0.00 0.00 3.01
1494 1537 3.938963 TCGCAACCCTAACTCAAATCATC 59.061 43.478 0.00 0.00 0.00 2.92
1517 1560 4.541213 AGGGACACCTCACACGAT 57.459 55.556 0.00 0.00 46.95 3.73
1531 1574 2.009042 GCATCGAAGTCACCAGAAGGG 61.009 57.143 0.00 0.00 44.81 3.95
1546 1589 4.150627 CACTAGACCATTTTATCGGCATCG 59.849 45.833 0.00 0.00 37.82 3.84
1597 1641 6.436890 TCCTTTTCTTTCTAAAACTCCCCAA 58.563 36.000 0.00 0.00 0.00 4.12
1628 1672 8.134895 ACGGCTTATCACCACAAATAATATTTG 58.865 33.333 20.55 20.55 35.64 2.32
1678 1738 6.379988 GCAGGGATAGAAAAGGGAACATTTTA 59.620 38.462 0.00 0.00 30.22 1.52
1695 1755 3.084536 TGCAGAAATTGTGCAGGGATA 57.915 42.857 13.96 0.00 45.96 2.59
1747 1811 5.509832 TGAGACACTAACCTAGGTAGTCA 57.490 43.478 25.72 16.28 32.36 3.41
1835 1901 4.799678 CACAAACGCACCATAAATTACCA 58.200 39.130 0.00 0.00 0.00 3.25
1836 1902 3.610677 GCACAAACGCACCATAAATTACC 59.389 43.478 0.00 0.00 0.00 2.85
1838 1904 4.775058 AGCACAAACGCACCATAAATTA 57.225 36.364 0.00 0.00 0.00 1.40
1885 1957 6.539826 AGAATCGATACAGAAATTGTGCATCA 59.460 34.615 0.00 0.00 41.10 3.07
2096 2220 9.613428 TCTTAAGTGAGAAGACAAAAGAATGAA 57.387 29.630 1.63 0.00 0.00 2.57
2129 2253 4.025040 TCTTTACAGAGGGAGTACGTGA 57.975 45.455 0.00 0.00 0.00 4.35
2130 2254 4.778534 TTCTTTACAGAGGGAGTACGTG 57.221 45.455 0.00 0.00 0.00 4.49
2131 2255 5.997384 ATTTCTTTACAGAGGGAGTACGT 57.003 39.130 0.00 0.00 0.00 3.57
2132 2256 9.680315 CTTATATTTCTTTACAGAGGGAGTACG 57.320 37.037 0.00 0.00 0.00 3.67
2155 2279 6.276832 ACAATAGTGGTCTAAACGCTCTTA 57.723 37.500 0.00 0.00 0.00 2.10
2176 2300 0.107410 ACGGACTGAACAAGGCAACA 60.107 50.000 0.00 0.00 34.40 3.33
2289 2439 9.185192 GTGGAAATAACAAGAGAAAGTGAATTG 57.815 33.333 0.00 0.00 0.00 2.32
2465 2615 6.258727 TCAAGTTTAGAGCTTGAAGTGAGTTG 59.741 38.462 4.99 0.00 46.21 3.16
2578 2728 5.633830 ATGCTGTAACTTGAGGAATTGTG 57.366 39.130 0.00 0.00 0.00 3.33
2616 2840 3.144657 ACTCCAACAAGCATGATCACA 57.855 42.857 0.00 0.00 0.00 3.58
2626 2850 8.786898 TCTATTTTCATTCTGAACTCCAACAAG 58.213 33.333 0.00 0.00 35.89 3.16
2644 2868 8.496751 GTGCGGAGAGGTAAATAATCTATTTTC 58.503 37.037 0.00 0.00 39.06 2.29
2653 2877 5.416271 AAAGAGTGCGGAGAGGTAAATAA 57.584 39.130 0.00 0.00 0.00 1.40
2674 2905 1.281867 TCCGAACGGAGGGAGTACTAA 59.718 52.381 12.04 0.00 39.76 2.24
2675 2906 0.911769 TCCGAACGGAGGGAGTACTA 59.088 55.000 12.04 0.00 39.76 1.82
2676 2907 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
2677 2908 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2678 2909 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2679 2910 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2680 2911 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2681 2912 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2682 2913 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2683 2914 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2684 2915 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2685 2916 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
2686 2917 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
2687 2918 2.159476 TCTGGACGAGTAATTCCGAACG 60.159 50.000 0.00 0.00 0.00 3.95
2688 2919 3.498927 TCTGGACGAGTAATTCCGAAC 57.501 47.619 0.00 0.00 0.00 3.95
2689 2920 4.524316 TTTCTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2690 2921 4.524316 TTTTCTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2691 2922 4.868171 TCATTTTCTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2692 2923 6.737254 TTCATTTTCTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2693 2924 7.752695 ACATTCATTTTCTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2694 2925 7.687941 ACATTCATTTTCTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2695 2926 8.964476 ATACATTCATTTTCTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2696 2927 8.258007 AGATACATTCATTTTCTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2697 2928 7.782049 AGATACATTCATTTTCTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
2698 2929 6.644347 AGATACATTCATTTTCTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
2699 2930 8.138074 TCTAGATACATTCATTTTCTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
2700 2931 8.007405 TCTAGATACATTCATTTTCTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
2701 2932 8.706936 CATCTAGATACATTCATTTTCTGGACG 58.293 37.037 4.54 0.00 28.55 4.79
2702 2933 9.553064 ACATCTAGATACATTCATTTTCTGGAC 57.447 33.333 4.54 0.00 28.55 4.02
2733 2964 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
2734 2965 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
2735 2966 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
2736 2967 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
2737 2968 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
2738 2969 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
2739 2970 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
2740 2971 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
2743 2974 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
2744 2975 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
2745 2976 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
2746 2977 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
2747 2978 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
2748 2979 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
2749 2980 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
2750 2981 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
2751 2982 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
2752 2983 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
2753 2984 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
2754 2985 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
2755 2986 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
2756 2987 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
2757 2988 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2758 2989 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2759 2990 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2760 2991 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2761 2992 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2762 2993 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2763 2994 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2764 2995 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2765 2996 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2766 2997 1.856629 TTACTCCCTCCGTTCGGAAT 58.143 50.000 14.79 2.09 33.41 3.01
2767 2998 1.856629 ATTACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.04 33.41 4.30
2768 2999 2.734755 TATTACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
2769 3000 2.626743 ACATATTACTCCCTCCGTTCGG 59.373 50.000 4.74 4.74 0.00 4.30
2770 3001 4.049186 CAACATATTACTCCCTCCGTTCG 58.951 47.826 0.00 0.00 0.00 3.95
2771 3002 4.141779 ACCAACATATTACTCCCTCCGTTC 60.142 45.833 0.00 0.00 0.00 3.95
2772 3003 3.778629 ACCAACATATTACTCCCTCCGTT 59.221 43.478 0.00 0.00 0.00 4.44
2773 3004 3.381335 ACCAACATATTACTCCCTCCGT 58.619 45.455 0.00 0.00 0.00 4.69
2774 3005 4.101119 AGAACCAACATATTACTCCCTCCG 59.899 45.833 0.00 0.00 0.00 4.63
2775 3006 5.632034 AGAACCAACATATTACTCCCTCC 57.368 43.478 0.00 0.00 0.00 4.30
2776 3007 8.019656 TCTTAGAACCAACATATTACTCCCTC 57.980 38.462 0.00 0.00 0.00 4.30
2777 3008 7.624077 ACTCTTAGAACCAACATATTACTCCCT 59.376 37.037 0.00 0.00 0.00 4.20
2778 3009 7.793036 ACTCTTAGAACCAACATATTACTCCC 58.207 38.462 0.00 0.00 0.00 4.30
2779 3010 8.475639 TGACTCTTAGAACCAACATATTACTCC 58.524 37.037 0.00 0.00 0.00 3.85
2945 3176 1.143684 TGGTTGAAAAGCTCCTCTGCT 59.856 47.619 0.00 0.00 46.34 4.24
3024 3255 1.075674 TGGTTTGGGGAGCAAAGCA 60.076 52.632 0.00 0.00 44.43 3.91
3032 3263 0.039035 GCCTACACATGGTTTGGGGA 59.961 55.000 0.00 0.00 30.69 4.81
3065 3304 8.295569 ACATTTAGTCGTCTTCTCTTACAAAC 57.704 34.615 0.00 0.00 0.00 2.93
3094 3333 2.697751 CCCCCAAAGTGATTGTTCAACA 59.302 45.455 0.00 0.00 37.32 3.33
3095 3334 3.385193 CCCCCAAAGTGATTGTTCAAC 57.615 47.619 0.00 0.00 37.32 3.18
3127 3366 8.974060 TGAGTAATAAATATTCAGGTGGGAAC 57.026 34.615 0.00 0.00 0.00 3.62
3128 3367 9.983024 TTTGAGTAATAAATATTCAGGTGGGAA 57.017 29.630 0.00 0.00 32.54 3.97
3131 3370 9.683069 GCATTTGAGTAATAAATATTCAGGTGG 57.317 33.333 0.00 0.00 32.54 4.61
3132 3371 9.683069 GGCATTTGAGTAATAAATATTCAGGTG 57.317 33.333 0.00 0.00 32.54 4.00
3133 3372 8.860088 GGGCATTTGAGTAATAAATATTCAGGT 58.140 33.333 0.00 0.00 32.54 4.00
3134 3373 8.859090 TGGGCATTTGAGTAATAAATATTCAGG 58.141 33.333 0.00 0.00 32.54 3.86
3137 3376 9.696917 CCTTGGGCATTTGAGTAATAAATATTC 57.303 33.333 0.00 0.00 0.00 1.75
3138 3377 8.650490 CCCTTGGGCATTTGAGTAATAAATATT 58.350 33.333 0.00 0.00 0.00 1.28
3139 3378 8.010105 TCCCTTGGGCATTTGAGTAATAAATAT 58.990 33.333 0.00 0.00 0.00 1.28
3140 3379 7.286775 GTCCCTTGGGCATTTGAGTAATAAATA 59.713 37.037 0.00 0.00 0.00 1.40
3141 3380 6.098266 GTCCCTTGGGCATTTGAGTAATAAAT 59.902 38.462 0.00 0.00 0.00 1.40
3180 3419 9.476928 GCCTATACCTTTCCTCTCACTATAATA 57.523 37.037 0.00 0.00 0.00 0.98
3185 3424 4.142790 CGCCTATACCTTTCCTCTCACTA 58.857 47.826 0.00 0.00 0.00 2.74
3216 3455 0.033503 TGTCAGTAGGGAGGCGATCA 60.034 55.000 0.00 0.00 0.00 2.92
3218 3457 1.043816 CATGTCAGTAGGGAGGCGAT 58.956 55.000 0.00 0.00 0.00 4.58
3219 3458 0.033503 TCATGTCAGTAGGGAGGCGA 60.034 55.000 0.00 0.00 0.00 5.54
3266 3505 4.620723 TCTAACATATCCCACCTGTGTCT 58.379 43.478 0.00 0.00 0.00 3.41
3269 3508 5.363868 TCTTCTCTAACATATCCCACCTGTG 59.636 44.000 0.00 0.00 0.00 3.66
3295 3538 0.038343 CAAAAGAACGGGGCCATGTG 60.038 55.000 4.39 0.00 0.00 3.21
3305 3548 6.148811 TCCTAACTAAATCAGCCAAAAGAACG 59.851 38.462 0.00 0.00 0.00 3.95
3340 3583 8.980596 TCTACCAGATTCTTAAACCCGTATTTA 58.019 33.333 0.00 0.00 0.00 1.40
3344 3587 6.855763 TTCTACCAGATTCTTAAACCCGTA 57.144 37.500 0.00 0.00 0.00 4.02
3345 3588 5.750352 TTCTACCAGATTCTTAAACCCGT 57.250 39.130 0.00 0.00 0.00 5.28
3346 3589 6.583562 AGATTCTACCAGATTCTTAAACCCG 58.416 40.000 0.00 0.00 32.72 5.28
3362 3605 4.405756 TGGATCTCCCCCTAGATTCTAC 57.594 50.000 0.00 0.00 36.33 2.59
3363 3606 5.640127 ATTGGATCTCCCCCTAGATTCTA 57.360 43.478 0.00 0.00 36.33 2.10
3514 3757 6.070194 CCGGTGAGGGAAAGGTATCATATAAT 60.070 42.308 0.00 0.00 35.97 1.28
3537 3780 1.200020 GTGCAAGAATTCAGAACCCCG 59.800 52.381 8.44 0.00 0.00 5.73
3701 3960 2.166664 AGGTAGATCTTGCTGTCGAACC 59.833 50.000 0.00 0.00 0.00 3.62
3750 4009 6.675987 CATTATCCTTCTCAGCTTTAATGCC 58.324 40.000 9.56 0.00 0.00 4.40
4197 4576 5.462405 TCGCTCTTCTCTTTCTGTTACTTC 58.538 41.667 0.00 0.00 0.00 3.01
4246 4625 1.342555 TGGCTACAAAATCGTCGTCG 58.657 50.000 0.00 0.00 38.55 5.12
4392 4774 3.790089 ACTCAGAATCGGTCCCTTTTT 57.210 42.857 0.00 0.00 0.00 1.94
4411 4793 7.739498 TCCAGTTTTACATTCAGAGGTAAAC 57.261 36.000 8.33 0.00 40.50 2.01
4462 4847 5.852827 TCATTGGCCTTTTCTTTTAAGGTG 58.147 37.500 3.32 0.00 43.34 4.00
4495 4880 6.489022 CAGCATGATCCTTCTTATTTCCATCA 59.511 38.462 0.00 0.00 39.69 3.07
4500 4885 5.530171 TCAGCAGCATGATCCTTCTTATTTC 59.470 40.000 0.00 0.00 39.69 2.17
4561 4946 3.243434 CCCGCTCATCTATACGTGTCTTT 60.243 47.826 0.00 0.00 0.00 2.52
4650 5035 7.551617 TGATATAAGCATGACAGAGCAATATGG 59.448 37.037 0.00 0.00 0.00 2.74
4693 5172 8.630054 TTCTAGTTTTTGCTTATTTAGGAGCA 57.370 30.769 0.00 0.00 46.37 4.26
4722 5201 7.886446 CAGTAAGGGGTATTTAGGTTTTCAAGA 59.114 37.037 0.00 0.00 0.00 3.02
5012 5511 7.505248 TGATGCAAGCCATGGAAATATTACTTA 59.495 33.333 18.40 0.00 33.29 2.24
5020 5519 4.502604 GCTAATGATGCAAGCCATGGAAAT 60.503 41.667 18.40 0.00 33.29 2.17
5056 5555 4.335874 CAGATGGAAGAATTGAGCAGAAGG 59.664 45.833 0.00 0.00 0.00 3.46
5060 5560 3.280295 AGCAGATGGAAGAATTGAGCAG 58.720 45.455 0.00 0.00 0.00 4.24
5153 5654 2.046507 CTTGCAGGAGCTTCGCCT 60.047 61.111 6.41 0.00 42.74 5.52
5288 5795 1.748879 AACAGCAACAGCGTGTGGT 60.749 52.632 0.00 0.00 0.00 4.16
5339 5846 7.050377 TCTGATGCCTGATAAACTAAAGAAGG 58.950 38.462 0.00 0.00 0.00 3.46
5417 5924 5.587844 CCTTCCTATTGTGCATATAGATGGC 59.412 44.000 16.27 0.00 33.26 4.40
5506 6014 6.405278 TGTAACATCCGACATCTGACATAT 57.595 37.500 0.00 0.00 0.00 1.78
5509 6017 4.242475 GTTGTAACATCCGACATCTGACA 58.758 43.478 0.00 0.00 0.00 3.58
5510 6018 4.242475 TGTTGTAACATCCGACATCTGAC 58.758 43.478 0.00 0.00 33.17 3.51
5511 6019 4.529109 TGTTGTAACATCCGACATCTGA 57.471 40.909 0.00 0.00 33.17 3.27
5512 6020 4.450757 TGTTGTTGTAACATCCGACATCTG 59.549 41.667 0.00 0.00 38.95 2.90
5513 6021 4.637276 TGTTGTTGTAACATCCGACATCT 58.363 39.130 0.00 0.00 38.95 2.90
5514 6022 5.545658 ATGTTGTTGTAACATCCGACATC 57.454 39.130 6.87 0.00 38.95 3.06
5515 6023 8.902540 ATATATGTTGTTGTAACATCCGACAT 57.097 30.769 13.91 13.91 40.87 3.06
5516 6024 8.725405 AATATATGTTGTTGTAACATCCGACA 57.275 30.769 8.39 0.89 40.87 4.35
5585 6093 4.218417 GGTGCATTCACTCAGGTTAACAAT 59.782 41.667 8.10 0.00 42.72 2.71
5599 6107 5.711506 ACATGAATAAGAACTGGTGCATTCA 59.288 36.000 0.00 0.00 36.96 2.57
5640 6148 1.892474 GGCCTGGCACAAACAGAAATA 59.108 47.619 22.05 0.00 38.70 1.40
5817 6329 2.362736 GCTTGCTCAATCACCAGATGA 58.637 47.619 0.00 0.00 43.13 2.92
5824 6336 0.723981 GAGACGGCTTGCTCAATCAC 59.276 55.000 0.00 0.00 0.00 3.06
5829 6341 0.320771 GGAAAGAGACGGCTTGCTCA 60.321 55.000 0.00 0.00 33.62 4.26
5830 6342 0.320771 TGGAAAGAGACGGCTTGCTC 60.321 55.000 0.00 0.00 0.00 4.26
5875 6399 2.100197 TCCGAGGTGATGTTCAGGTAG 58.900 52.381 0.00 0.00 0.00 3.18
5964 6490 8.967664 AACAAACCAATACTGACTACTACAAA 57.032 30.769 0.00 0.00 0.00 2.83
5976 6502 3.181437 ACCGGGAAGAACAAACCAATACT 60.181 43.478 6.32 0.00 0.00 2.12
5997 6528 6.467723 TTTAGCTCGTCTTGAATTCTGAAC 57.532 37.500 7.05 1.27 0.00 3.18
6029 6560 0.460311 AAGATTCCTACCGACCGCAG 59.540 55.000 0.00 0.00 0.00 5.18
6054 6590 4.046286 ACAGGATGCCCATTCAGTAAAA 57.954 40.909 0.00 0.00 42.53 1.52
6098 6639 5.947663 AGACAGGAGATAGTATGTACAGCT 58.052 41.667 0.33 4.86 0.00 4.24
6137 6678 3.164024 TCCAACCTCAGGAGAGCAA 57.836 52.632 0.00 0.00 40.68 3.91
6259 6800 3.371965 ACCCGACCATACTGTGAAGTAT 58.628 45.455 0.00 0.00 35.56 2.12
6286 6827 8.871629 TCAGTAAAAAGAGGGTGCATATTTAA 57.128 30.769 0.00 0.00 0.00 1.52
6294 6835 4.911514 TTGTTCAGTAAAAAGAGGGTGC 57.088 40.909 0.00 0.00 0.00 5.01
6299 6840 6.258160 CGCCCATATTGTTCAGTAAAAAGAG 58.742 40.000 0.00 0.00 0.00 2.85
6379 6920 2.872842 GCTAAGGCGAACCCAACTACAA 60.873 50.000 0.00 0.00 36.11 2.41
6383 6924 0.321653 CAGCTAAGGCGAACCCAACT 60.322 55.000 0.00 0.00 44.37 3.16
6408 6957 0.602905 ACTGGCGTAGGTTGACTTGC 60.603 55.000 0.00 0.00 0.00 4.01
6434 6983 6.353323 TGGTTCAGTAAAGAGATTGTGTTCA 58.647 36.000 0.00 0.00 0.00 3.18
6435 6984 6.861065 TGGTTCAGTAAAGAGATTGTGTTC 57.139 37.500 0.00 0.00 0.00 3.18
6437 6986 5.639506 CGATGGTTCAGTAAAGAGATTGTGT 59.360 40.000 0.00 0.00 0.00 3.72
6438 6987 5.446473 GCGATGGTTCAGTAAAGAGATTGTG 60.446 44.000 0.00 0.00 0.00 3.33
6439 6988 4.631813 GCGATGGTTCAGTAAAGAGATTGT 59.368 41.667 0.00 0.00 0.00 2.71
6441 6990 4.080863 AGGCGATGGTTCAGTAAAGAGATT 60.081 41.667 0.00 0.00 0.00 2.40
6478 7031 3.347216 CTCCTTTACCACTTGTGGGATG 58.653 50.000 21.98 10.65 0.00 3.51
6479 7032 2.308866 CCTCCTTTACCACTTGTGGGAT 59.691 50.000 21.98 6.47 0.00 3.85
6492 7045 0.323178 ACTCGTCTCGCCCTCCTTTA 60.323 55.000 0.00 0.00 0.00 1.85
6645 7216 1.139095 CGGAAGGCTCTGGTCGTAC 59.861 63.158 0.00 0.00 0.00 3.67
6751 7327 1.226491 GCAATCATGACAGCCGTGC 60.226 57.895 0.00 0.00 0.00 5.34
6758 7334 1.585267 GGTGTGGCGCAATCATGACA 61.585 55.000 10.83 0.00 0.00 3.58
6759 7335 1.137404 GGTGTGGCGCAATCATGAC 59.863 57.895 10.83 0.00 0.00 3.06
6760 7336 2.397754 CGGTGTGGCGCAATCATGA 61.398 57.895 10.83 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.