AutoCloner

Multiple sequence alignment - TraesCS3B01G155600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G155600	chr3B	100.000	3596	0	0	1	3596	148294137	148290542	0.000000e+00	6641.0
1	TraesCS3B01G155600	chr3B	95.742	681	23	6	1	678	534981271	534980594	0.000000e+00	1092.0
2	TraesCS3B01G155600	chr3B	91.778	450	36	1	1304	1752	485701206	485700757	3.050000e-175	625.0
3	TraesCS3B01G155600	chr3D	93.833	2643	78	35	680	3280	97612648	97610049	0.000000e+00	3899.0
4	TraesCS3B01G155600	chr3D	94.785	326	10	3	3278	3596	97609889	97609564	5.360000e-138	501.0
5	TraesCS3B01G155600	chr3D	100.000	28	0	0	1696	1723	581274575	581274602	6.000000e-03	52.8
6	TraesCS3B01G155600	chr3A	93.899	1934	81	13	951	2859	114772152	114770231	0.000000e+00	2883.0
7	TraesCS3B01G155600	chr3A	95.882	680	21	7	1	677	688922396	688923071	0.000000e+00	1094.0
8	TraesCS3B01G155600	chr3A	95.595	681	25	5	1	678	7250338	7249660	0.000000e+00	1086.0
9	TraesCS3B01G155600	chr3A	84.731	334	27	17	3281	3596	114769453	114769126	2.700000e-81	313.0
10	TraesCS3B01G155600	chr3A	88.085	235	21	6	3037	3265	114769781	114769548	4.570000e-69	272.0
11	TraesCS3B01G155600	chr3A	87.027	185	14	8	697	876	114772565	114772386	2.190000e-47	200.0
12	TraesCS3B01G155600	chr1B	96.182	681	20	5	1	678	123353838	123353161	0.000000e+00	1109.0
13	TraesCS3B01G155600	chr6A	96.041	682	22	5	1	678	55028319	55027639	0.000000e+00	1105.0
14	TraesCS3B01G155600	chr4A	96.041	682	20	5	1	679	584140757	584140080	0.000000e+00	1103.0
15	TraesCS3B01G155600	chr5A	95.748	682	24	4	1	679	531560234	531559555	0.000000e+00	1094.0
16	TraesCS3B01G155600	chr2A	95.735	680	24	5	1	677	193459692	193460369	0.000000e+00	1090.0
17	TraesCS3B01G155600	chr2A	88.488	443	36	5	1310	1752	106109557	106109130	4.110000e-144	521.0
18	TraesCS3B01G155600	chr4B	95.588	680	26	4	1	677	469519477	469520155	0.000000e+00	1086.0
19	TraesCS3B01G155600	chr7B	92.889	450	29	2	1304	1752	356983550	356983103	0.000000e+00	651.0
20	TraesCS3B01G155600	chr1A	91.333	450	23	8	1304	1752	469399213	469398779	5.140000e-168	601.0
21	TraesCS3B01G155600	chr1D	91.213	239	20	1	1304	1541	270586282	270586044	1.250000e-84	324.0
22	TraesCS3B01G155600	chr1D	90.698	43	1	3	1696	1738	122602380	122602341	2.000000e-03	54.7
23	TraesCS3B01G155600	chr1D	100.000	28	0	0	1696	1723	234564306	234564333	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G155600	chr3B	148290542	148294137	3595	True	6641	6641	100.0000	1	3596	1	chr3B.!!$R1	3595
1	TraesCS3B01G155600	chr3B	534980594	534981271	677	True	1092	1092	95.7420	1	678	1	chr3B.!!$R3	677
2	TraesCS3B01G155600	chr3D	97609564	97612648	3084	True	2200	3899	94.3090	680	3596	2	chr3D.!!$R1	2916
3	TraesCS3B01G155600	chr3A	688922396	688923071	675	False	1094	1094	95.8820	1	677	1	chr3A.!!$F1	676
4	TraesCS3B01G155600	chr3A	7249660	7250338	678	True	1086	1086	95.5950	1	678	1	chr3A.!!$R1	677
5	TraesCS3B01G155600	chr3A	114769126	114772565	3439	True	917	2883	88.4355	697	3596	4	chr3A.!!$R2	2899
6	TraesCS3B01G155600	chr1B	123353161	123353838	677	True	1109	1109	96.1820	1	678	1	chr1B.!!$R1	677
7	TraesCS3B01G155600	chr6A	55027639	55028319	680	True	1105	1105	96.0410	1	678	1	chr6A.!!$R1	677
8	TraesCS3B01G155600	chr4A	584140080	584140757	677	True	1103	1103	96.0410	1	679	1	chr4A.!!$R1	678
9	TraesCS3B01G155600	chr5A	531559555	531560234	679	True	1094	1094	95.7480	1	679	1	chr5A.!!$R1	678
10	TraesCS3B01G155600	chr2A	193459692	193460369	677	False	1090	1090	95.7350	1	677	1	chr2A.!!$F1	676
11	TraesCS3B01G155600	chr4B	469519477	469520155	678	False	1086	1086	95.5880	1	677	1	chr4B.!!$F1	676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
765	772	0.179097	GCTGTGCTGCCTAGAGTACC	60.179	60.0	0.00	0.00	3.34	F
897	913	0.258194	TCCTCCCTCCTACCTTCGTC	59.742	60.0	0.00	0.00	4.20	F
2194	2381	0.741221	GAGCGGATTCGGCAAGTTCT	60.741	55.0	17.21	36.79	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2226	2413	1.144936	GAAGGCCGTCTCCATCCTG	59.855	63.158	11.87	0.00	3.86	R
2395	2582	1.605058	CGGACCTGGAAGATGGACGT	61.605	60.000	0.00	34.07	4.34	R
3490	4288	0.399833	TGCACTTCACACAGGCCATA	59.600	50.000	5.01	0.00	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
250	252	6.099269	TCGTAGATTTGGCTAAGGTAGGAAAT	59.901	38.462	0.00	0.00	0.00	2.17
326	328	7.867921	TGATTTGGCTAAGGTAGGAAAGAATA	58.132	34.615	0.00	0.00	0.00	1.75
463	465	4.650972	TGTTGATTTGGCTAAGGTAGGT	57.349	40.909	0.00	0.00	0.00	3.08
533	537	1.071314	AAACCATGGGAGGTGGGACA	61.071	55.000	18.09	0.00	42.25	4.02
537	542	1.549203	CATGGGAGGTGGGACAAAAG	58.451	55.000	0.00	0.00	44.16	2.27
544	549	3.704566	GGAGGTGGGACAAAAGAAAAACT	59.295	43.478	0.00	0.00	44.16	2.66
660	667	0.969894	AGCGAGACTACCAACTGCTT	59.030	50.000	0.00	0.00	0.00	3.91
679	686	5.519808	TGCTTCCTTAGGAGTAGAGATTGA	58.480	41.667	0.00	0.00	31.21	2.57
680	687	6.139671	TGCTTCCTTAGGAGTAGAGATTGAT	58.860	40.000	0.00	0.00	31.21	2.57
681	688	6.613271	TGCTTCCTTAGGAGTAGAGATTGATT	59.387	38.462	0.00	0.00	31.21	2.57
682	689	7.126421	TGCTTCCTTAGGAGTAGAGATTGATTT	59.874	37.037	0.00	0.00	31.21	2.17
683	690	7.440856	GCTTCCTTAGGAGTAGAGATTGATTTG	59.559	40.741	0.00	0.00	31.21	2.32
684	691	7.979786	TCCTTAGGAGTAGAGATTGATTTGT	57.020	36.000	0.00	0.00	0.00	2.83
685	692	7.786030	TCCTTAGGAGTAGAGATTGATTTGTG	58.214	38.462	0.00	0.00	0.00	3.33
686	693	6.481644	CCTTAGGAGTAGAGATTGATTTGTGC	59.518	42.308	0.00	0.00	0.00	4.57
687	694	4.775236	AGGAGTAGAGATTGATTTGTGCC	58.225	43.478	0.00	0.00	0.00	5.01
688	695	4.472833	AGGAGTAGAGATTGATTTGTGCCT	59.527	41.667	0.00	0.00	0.00	4.75
689	696	4.574013	GGAGTAGAGATTGATTTGTGCCTG	59.426	45.833	0.00	0.00	0.00	4.85
690	697	3.944015	AGTAGAGATTGATTTGTGCCTGC	59.056	43.478	0.00	0.00	0.00	4.85
691	698	3.083122	AGAGATTGATTTGTGCCTGCT	57.917	42.857	0.00	0.00	0.00	4.24
692	699	2.753452	AGAGATTGATTTGTGCCTGCTG	59.247	45.455	0.00	0.00	0.00	4.41
693	700	2.490903	GAGATTGATTTGTGCCTGCTGT	59.509	45.455	0.00	0.00	0.00	4.40
694	701	2.490903	AGATTGATTTGTGCCTGCTGTC	59.509	45.455	0.00	0.00	0.00	3.51
730	737	5.123979	GCTGGAAAATGAATTCTTACCGTCT	59.876	40.000	7.05	0.00	0.00	4.18
733	740	8.036273	TGGAAAATGAATTCTTACCGTCTAAC	57.964	34.615	7.05	0.00	0.00	2.34
761	768	1.814586	GCTGCTGTGCTGCCTAGAG	60.815	63.158	9.71	0.00	45.42	2.43
762	769	1.595882	CTGCTGTGCTGCCTAGAGT	59.404	57.895	0.00	0.00	0.00	3.24
763	770	0.820226	CTGCTGTGCTGCCTAGAGTA	59.180	55.000	0.00	0.00	0.00	2.59
765	772	0.179097	GCTGTGCTGCCTAGAGTACC	60.179	60.000	0.00	0.00	0.00	3.34
768	775	3.226777	CTGTGCTGCCTAGAGTACCTAT	58.773	50.000	0.00	0.00	0.00	2.57
769	776	3.223435	TGTGCTGCCTAGAGTACCTATC	58.777	50.000	0.00	0.00	0.00	2.08
770	777	2.226912	GTGCTGCCTAGAGTACCTATCG	59.773	54.545	0.00	0.00	0.00	2.92
771	778	1.200484	GCTGCCTAGAGTACCTATCGC	59.800	57.143	0.00	0.00	0.00	4.58
773	780	2.745281	CTGCCTAGAGTACCTATCGCTC	59.255	54.545	0.00	0.00	0.00	5.03
774	781	2.105993	TGCCTAGAGTACCTATCGCTCA	59.894	50.000	0.00	0.00	0.00	4.26
888	904	1.330155	TTATCCCACTCCTCCCTCCT	58.670	55.000	0.00	0.00	0.00	3.69
897	913	0.258194	TCCTCCCTCCTACCTTCGTC	59.742	60.000	0.00	0.00	0.00	4.20
937	954	4.687215	GACAGCACAGCCGAGCCA	62.687	66.667	0.00	0.00	0.00	4.75
2097	2284	2.408022	CGGGAGTTCTACGAGCGG	59.592	66.667	0.00	0.00	0.00	5.52
2194	2381	0.741221	GAGCGGATTCGGCAAGTTCT	60.741	55.000	17.21	0.00	36.79	3.01
2460	2647	0.388649	ACATGGAGAGCGTCAACGAC	60.389	55.000	6.75	0.00	43.02	4.34
2544	2731	1.885163	CTGGGTTTAGAGTCGGCCGT	61.885	60.000	27.15	6.47	0.00	5.68
2613	2810	3.685058	GTGATCAGCAAATTAGAACCGC	58.315	45.455	0.00	0.00	0.00	5.68
2723	2945	3.211963	GGCGATCATGGTGGTGGC	61.212	66.667	0.00	0.00	31.00	5.01
2812	3035	0.178767	ATGATGCGGTGCTCTTGCTA	59.821	50.000	5.44	0.00	40.48	3.49
2817	3040	0.654683	GCGGTGCTCTTGCTATCTTG	59.345	55.000	0.00	0.00	40.48	3.02
2833	3056	1.942657	TCTTGTTGTCTTGCAGTCTGC	59.057	47.619	18.32	18.32	45.29	4.26
2835	3058	2.908688	TGTTGTCTTGCAGTCTGCTA	57.091	45.000	24.76	16.88	45.31	3.49
2842	3065	4.821260	TGTCTTGCAGTCTGCTAATTTTCA	59.179	37.500	24.76	11.94	45.31	2.69
2885	3109	3.270877	GTCTGATGGTAGCACCGAATTT	58.729	45.455	0.00	0.00	42.58	1.82
2895	3119	4.889832	AGCACCGAATTTCAGATGATTC	57.110	40.909	0.00	0.00	0.00	2.52
2896	3120	3.629398	AGCACCGAATTTCAGATGATTCC	59.371	43.478	0.00	0.00	0.00	3.01
2897	3121	3.378112	GCACCGAATTTCAGATGATTCCA	59.622	43.478	0.00	0.00	0.00	3.53
2898	3122	4.142403	GCACCGAATTTCAGATGATTCCAA	60.142	41.667	0.00	0.00	0.00	3.53
2900	3124	5.124457	CACCGAATTTCAGATGATTCCAACT	59.876	40.000	0.00	0.00	0.00	3.16
2901	3125	5.124457	ACCGAATTTCAGATGATTCCAACTG	59.876	40.000	0.00	0.00	42.47	3.16
2902	3126	5.355071	CCGAATTTCAGATGATTCCAACTGA	59.645	40.000	0.00	0.00	46.23	3.41
2910	3134	8.180706	TCAGATGATTCCAACTGAAAATTTCA	57.819	30.769	8.25	8.25	45.35	2.69
3013	3273	0.674895	AGATTCCAGCTGCACGTTCC	60.675	55.000	8.66	0.00	0.00	3.62
3016	3276	1.758440	TTCCAGCTGCACGTTCCTCT	61.758	55.000	8.66	0.00	0.00	3.69
3109	3646	5.915812	ACTTGTTTTGGTTGTTTGTTGAC	57.084	34.783	0.00	0.00	0.00	3.18
3123	3660	3.050354	TTGACGTGGCCTTGGTGGT	62.050	57.895	3.32	0.00	38.35	4.16
3143	3680	1.574134	ACGTACGTTGGAACTTGTGG	58.426	50.000	16.72	0.00	0.00	4.17
3322	4107	4.757019	TGGCAATACGGTTGGTTCTATA	57.243	40.909	5.19	0.00	0.00	1.31
3382	4168	0.908198	AGATCTCAAGAAAGGCGGCT	59.092	50.000	5.25	5.25	0.00	5.52
3457	4244	0.035176	TTTCCAGCTGCCATTTTGCC	59.965	50.000	8.66	0.00	0.00	4.52
3461	4248	0.172803	CAGCTGCCATTTTGCCTCTC	59.827	55.000	0.00	0.00	0.00	3.20
3479	4277	6.014925	TGCCTCTCGCTTTTGTGGTATATATA	60.015	38.462	0.00	0.00	38.78	0.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
194	196	8.742777	TCTCTCATTAATGCAATTTGCTTTAGT	58.257	29.630	21.19	17.67	45.31	2.24
413	415	9.850628	TCTCTCTCATTAATGCAATTTTCTTTG	57.149	29.630	10.76	0.00	37.87	2.77
463	465	1.433879	CCACGAACCGCAAAAACCA	59.566	52.632	0.00	0.00	0.00	3.67
533	537	5.269189	TCCCACCTCTCAAGTTTTTCTTTT	58.731	37.500	0.00	0.00	33.63	2.27
537	542	3.821748	ACTCCCACCTCTCAAGTTTTTC	58.178	45.455	0.00	0.00	0.00	2.29
544	549	1.056660	GGACAACTCCCACCTCTCAA	58.943	55.000	0.00	0.00	0.00	3.02
609	615	0.613853	TTAGTCCCACCTCTCACGGG	60.614	60.000	0.00	0.00	41.76	5.28
634	641	0.970937	TGGTAGTCTCGCTTCCAGGG	60.971	60.000	0.00	0.00	39.34	4.45
660	667	7.633772	GCACAAATCAATCTCTACTCCTAAGGA	60.634	40.741	0.00	0.00	0.00	3.36
679	686	2.868839	GCAAATGACAGCAGGCACAAAT	60.869	45.455	0.00	0.00	0.00	2.32
680	687	1.538634	GCAAATGACAGCAGGCACAAA	60.539	47.619	0.00	0.00	0.00	2.83
681	688	0.032403	GCAAATGACAGCAGGCACAA	59.968	50.000	0.00	0.00	0.00	3.33
682	689	0.824595	AGCAAATGACAGCAGGCACA	60.825	50.000	0.00	0.00	0.00	4.57
683	690	0.316204	AAGCAAATGACAGCAGGCAC	59.684	50.000	0.00	0.00	0.00	5.01
684	691	0.599558	GAAGCAAATGACAGCAGGCA	59.400	50.000	0.00	0.00	0.00	4.75
685	692	0.886563	AGAAGCAAATGACAGCAGGC	59.113	50.000	0.00	0.00	0.00	4.85
686	693	1.201647	CCAGAAGCAAATGACAGCAGG	59.798	52.381	0.00	0.00	0.00	4.85
687	694	1.402456	GCCAGAAGCAAATGACAGCAG	60.402	52.381	0.00	0.00	42.97	4.24
688	695	0.599558	GCCAGAAGCAAATGACAGCA	59.400	50.000	0.00	0.00	42.97	4.41
689	696	3.413522	GCCAGAAGCAAATGACAGC	57.586	52.632	0.00	0.00	42.97	4.40
693	700	8.145134	TTCATTTTCCAGCCAGAAGCAAATGA	62.145	38.462	6.73	6.73	43.17	2.57
742	749	2.046604	CTAGGCAGCACAGCAGCA	60.047	61.111	8.58	0.00	42.80	4.41
744	751	0.820226	TACTCTAGGCAGCACAGCAG	59.180	55.000	0.00	0.00	35.83	4.24
745	752	0.532573	GTACTCTAGGCAGCACAGCA	59.467	55.000	0.00	0.00	35.83	4.41
747	754	1.479709	AGGTACTCTAGGCAGCACAG	58.520	55.000	0.00	0.00	0.00	3.66
748	755	2.820728	TAGGTACTCTAGGCAGCACA	57.179	50.000	0.00	0.00	41.75	4.57
749	756	2.226912	CGATAGGTACTCTAGGCAGCAC	59.773	54.545	0.00	0.00	41.75	4.40
765	772	2.713895	ACCGATGACATGAGCGATAG	57.286	50.000	0.00	0.00	0.00	2.08
768	775	0.668535	CCTACCGATGACATGAGCGA	59.331	55.000	0.00	0.00	0.00	4.93
769	776	0.668535	TCCTACCGATGACATGAGCG	59.331	55.000	0.00	0.00	0.00	5.03
770	777	1.604185	GCTCCTACCGATGACATGAGC	60.604	57.143	0.00	7.26	37.24	4.26
771	778	1.683385	TGCTCCTACCGATGACATGAG	59.317	52.381	0.00	0.00	0.00	2.90
773	780	1.858091	GTGCTCCTACCGATGACATG	58.142	55.000	0.00	0.00	0.00	3.21
774	781	0.385751	CGTGCTCCTACCGATGACAT	59.614	55.000	0.00	0.00	0.00	3.06
910	926	0.033090	CTGTGCTGTCTGTCTCTGCA	59.967	55.000	0.00	0.00	37.41	4.41
937	954	4.737177	GCTGGCTGCTCCTGGCTT	62.737	66.667	9.31	0.00	42.39	4.35
1046	1221	4.962836	GCTGGCTGTGGCTGTGGT	62.963	66.667	0.00	0.00	38.73	4.16
1098	1282	3.257933	CGGAGCAGCTTGGTGAAC	58.742	61.111	0.00	0.00	0.00	3.18
1527	1714	4.803426	CTGGTGAGCTCCGCGACC	62.803	72.222	8.23	12.57	36.78	4.79
1704	1891	3.687321	GAGCTCCGCATCCTTGGCA	62.687	63.158	0.87	0.00	0.00	4.92
2097	2284	4.796231	TCCTCGAAGAAGCGGCGC	62.796	66.667	26.86	26.86	34.09	6.53
2194	2381	3.047280	CAGGTACTTGGCGCGCAA	61.047	61.111	34.42	21.78	34.60	4.85
2226	2413	1.144936	GAAGGCCGTCTCCATCCTG	59.855	63.158	11.87	0.00	0.00	3.86
2395	2582	1.605058	CGGACCTGGAAGATGGACGT	61.605	60.000	0.00	0.00	34.07	4.34
2520	2707	2.454538	CCGACTCTAAACCCAGGTACT	58.545	52.381	0.00	0.00	43.88	2.73
2544	2731	4.846551	CGGCATTGGATCACCGTA	57.153	55.556	0.00	0.00	40.77	4.02
2708	2924	2.896854	CCGCCACCACCATGATCG	60.897	66.667	0.00	0.00	0.00	3.69
2723	2945	5.722923	TCCCTTAATAGATACATAACCCCCG	59.277	44.000	0.00	0.00	0.00	5.73
2800	3023	3.077359	ACAACAAGATAGCAAGAGCACC	58.923	45.455	0.00	0.00	45.49	5.01
2812	3035	2.551459	GCAGACTGCAAGACAACAAGAT	59.449	45.455	22.62	0.00	44.26	2.40
2885	3109	8.180706	TGAAATTTTCAGTTGGAATCATCTGA	57.819	30.769	7.74	3.79	43.82	3.27
2900	3124	8.393366	CGCTAGAGAAATCATCTGAAATTTTCA	58.607	33.333	11.19	11.19	38.96	2.69
2901	3125	8.394121	ACGCTAGAGAAATCATCTGAAATTTTC	58.606	33.333	0.00	2.05	38.96	2.29
2902	3126	8.273780	ACGCTAGAGAAATCATCTGAAATTTT	57.726	30.769	0.00	0.00	38.96	1.82
2903	3127	7.856145	ACGCTAGAGAAATCATCTGAAATTT	57.144	32.000	0.00	0.00	38.96	1.82
2904	3128	7.011857	GGAACGCTAGAGAAATCATCTGAAATT	59.988	37.037	0.00	0.00	38.96	1.82
2905	3129	6.481644	GGAACGCTAGAGAAATCATCTGAAAT	59.518	38.462	0.00	0.00	38.96	2.17
2906	3130	5.812642	GGAACGCTAGAGAAATCATCTGAAA	59.187	40.000	0.00	0.00	38.96	2.69
2907	3131	5.105351	TGGAACGCTAGAGAAATCATCTGAA	60.105	40.000	0.00	0.00	38.96	3.02
2908	3132	4.402474	TGGAACGCTAGAGAAATCATCTGA	59.598	41.667	0.00	0.00	38.96	3.27
2909	3133	4.686972	TGGAACGCTAGAGAAATCATCTG	58.313	43.478	0.00	0.00	38.96	2.90
2910	3134	4.404073	ACTGGAACGCTAGAGAAATCATCT	59.596	41.667	0.00	0.00	42.61	2.90
2911	3135	4.688021	ACTGGAACGCTAGAGAAATCATC	58.312	43.478	0.00	0.00	0.00	2.92
2912	3136	4.744795	ACTGGAACGCTAGAGAAATCAT	57.255	40.909	0.00	0.00	0.00	2.45
2913	3137	4.021456	TGAACTGGAACGCTAGAGAAATCA	60.021	41.667	0.00	0.00	0.00	2.57
2914	3138	4.495422	TGAACTGGAACGCTAGAGAAATC	58.505	43.478	0.00	0.00	0.00	2.17
2915	3139	4.537135	TGAACTGGAACGCTAGAGAAAT	57.463	40.909	0.00	0.00	0.00	2.17
2916	3140	4.021456	TCATGAACTGGAACGCTAGAGAAA	60.021	41.667	0.00	0.00	0.00	2.52
2917	3141	3.509967	TCATGAACTGGAACGCTAGAGAA	59.490	43.478	0.00	0.00	0.00	2.87
2918	3142	3.089284	TCATGAACTGGAACGCTAGAGA	58.911	45.455	0.00	0.00	0.00	3.10
2919	3143	3.443037	CTCATGAACTGGAACGCTAGAG	58.557	50.000	0.00	0.00	0.00	2.43
2920	3144	2.417379	GCTCATGAACTGGAACGCTAGA	60.417	50.000	0.00	0.00	0.00	2.43
2921	3145	1.929836	GCTCATGAACTGGAACGCTAG	59.070	52.381	0.00	0.00	0.00	3.42
2922	3146	1.275010	TGCTCATGAACTGGAACGCTA	59.725	47.619	0.00	0.00	0.00	4.26
2971	3230	4.805719	TGCGTATGAACTTGATCAGATCAC	59.194	41.667	13.01	2.34	37.14	3.06
3013	3273	3.407424	TTCAGACCATGTTCACCAGAG	57.593	47.619	0.00	0.00	0.00	3.35
3016	3276	4.371624	AGAATTCAGACCATGTTCACCA	57.628	40.909	8.44	0.00	0.00	4.17
3109	3646	2.740826	CGTACCACCAAGGCCACG	60.741	66.667	5.01	0.00	43.14	4.94
3123	3660	2.741612	CCACAAGTTCCAACGTACGTA	58.258	47.619	23.12	2.73	0.00	3.57
3322	4107	8.353684	CAGAATCGTAGAATGGAGTATACAAGT	58.646	37.037	5.50	0.00	43.58	3.16
3370	4156	3.951663	ACAATAAGTAGCCGCCTTTCTT	58.048	40.909	0.00	0.00	0.00	2.52
3382	4168	9.658475	CTTCACACGAAATCAAAACAATAAGTA	57.342	29.630	0.00	0.00	0.00	2.24
3457	4244	8.873830	CCAATATATATACCACAAAAGCGAGAG	58.126	37.037	0.00	0.00	0.00	3.20
3461	4248	7.389330	TGTCCCAATATATATACCACAAAAGCG	59.611	37.037	0.00	0.00	0.00	4.68
3479	4277	3.033184	CACAGGCCATAATTGTCCCAAT	58.967	45.455	5.01	0.00	0.00	3.16
3490	4288	0.399833	TGCACTTCACACAGGCCATA	59.600	50.000	5.01	0.00	0.00	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.