Multiple sequence alignment - TraesCS3B01G154200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G154200 chr3B 100.000 3158 0 0 1 3158 146708116 146704959 0.000000e+00 5832.0
1 TraesCS3B01G154200 chr3B 85.577 104 15 0 1398 1501 256434600 256434703 3.330000e-20 110.0
2 TraesCS3B01G154200 chr3D 91.900 1642 65 25 854 2463 95840555 95838950 0.000000e+00 2233.0
3 TraesCS3B01G154200 chr3D 79.928 558 76 23 2467 2990 95838913 95838358 8.270000e-101 377.0
4 TraesCS3B01G154200 chr3D 92.683 246 6 3 564 809 95840792 95840559 8.390000e-91 344.0
5 TraesCS3B01G154200 chr3D 84.146 328 45 4 1 326 95842413 95842091 8.510000e-81 311.0
6 TraesCS3B01G154200 chr3D 93.258 178 9 3 314 489 95841439 95841263 3.120000e-65 259.0
7 TraesCS3B01G154200 chr3D 84.615 104 16 0 1398 1501 177779020 177779123 1.550000e-18 104.0
8 TraesCS3B01G154200 chr3A 91.778 1350 68 17 923 2260 113922631 113921313 0.000000e+00 1838.0
9 TraesCS3B01G154200 chr3A 78.959 442 44 30 308 717 113923149 113922725 4.040000e-64 255.0
10 TraesCS3B01G154200 chr3A 85.577 104 15 0 1398 1501 218729432 218729535 3.330000e-20 110.0
11 TraesCS3B01G154200 chr3A 100.000 56 0 0 755 810 113922714 113922659 1.550000e-18 104.0
12 TraesCS3B01G154200 chr2D 74.120 1136 204 60 1043 2158 55630258 55629193 1.370000e-103 387.0
13 TraesCS3B01G154200 chr2D 87.931 58 5 2 127 182 620532697 620532640 2.030000e-07 67.6
14 TraesCS3B01G154200 chr7A 78.764 518 82 25 1309 1813 516873070 516872568 3.930000e-84 322.0
15 TraesCS3B01G154200 chr7A 85.572 201 29 0 1309 1509 516989958 516989758 8.870000e-51 211.0
16 TraesCS3B01G154200 chr7A 78.912 147 16 13 1080 1219 515199454 515199592 5.610000e-13 86.1
17 TraesCS3B01G154200 chr7D 77.586 522 92 20 1309 1813 478370579 478371092 3.080000e-75 292.0
18 TraesCS3B01G154200 chr7D 82.979 141 20 4 1077 1215 478370360 478370498 1.190000e-24 124.0
19 TraesCS3B01G154200 chr7B 89.055 201 22 0 1309 1509 503506618 503506818 1.880000e-62 250.0
20 TraesCS3B01G154200 chr7B 82.270 141 21 4 1077 1215 503506393 503506531 5.530000e-23 119.0
21 TraesCS3B01G154200 chr7B 93.056 72 5 0 1144 1215 504244522 504244451 4.310000e-19 106.0
22 TraesCS3B01G154200 chr6A 81.169 154 24 5 1069 1219 109135725 109135876 5.530000e-23 119.0
23 TraesCS3B01G154200 chr6B 80.255 157 26 5 1066 1219 173391759 173391913 2.570000e-21 113.0
24 TraesCS3B01G154200 chr6B 74.627 201 36 10 120 308 700099346 700099543 1.210000e-09 75.0
25 TraesCS3B01G154200 chr5A 74.180 244 47 8 4 233 653771659 653771900 1.560000e-13 87.9
26 TraesCS3B01G154200 chr2A 78.082 146 27 3 74 216 26588817 26588960 1.560000e-13 87.9
27 TraesCS3B01G154200 chr5D 74.262 237 44 10 1 223 526583291 526583524 2.020000e-12 84.2
28 TraesCS3B01G154200 chr5B 88.235 68 7 1 2467 2533 241966794 241966727 2.610000e-11 80.5
29 TraesCS3B01G154200 chr5B 100.000 35 0 0 148 182 534911519 534911485 7.310000e-07 65.8
30 TraesCS3B01G154200 chr1D 84.615 78 12 0 233 310 489952983 489953060 9.390000e-11 78.7
31 TraesCS3B01G154200 chr1B 87.879 66 7 1 144 208 148495908 148495843 3.380000e-10 76.8
32 TraesCS3B01G154200 chr6D 83.784 74 12 0 236 309 19281618 19281545 1.570000e-08 71.3
33 TraesCS3B01G154200 chr4B 83.099 71 12 0 150 220 586228700 586228630 7.310000e-07 65.8
34 TraesCS3B01G154200 chr4D 75.000 176 22 10 5 179 11878650 11878804 9.460000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G154200 chr3B 146704959 146708116 3157 True 5832.000000 5832 100.000000 1 3158 1 chr3B.!!$R1 3157
1 TraesCS3B01G154200 chr3D 95838358 95842413 4055 True 704.800000 2233 88.383000 1 2990 5 chr3D.!!$R1 2989
2 TraesCS3B01G154200 chr3A 113921313 113923149 1836 True 732.333333 1838 90.245667 308 2260 3 chr3A.!!$R1 1952
3 TraesCS3B01G154200 chr2D 55629193 55630258 1065 True 387.000000 387 74.120000 1043 2158 1 chr2D.!!$R1 1115
4 TraesCS3B01G154200 chr7A 516872568 516873070 502 True 322.000000 322 78.764000 1309 1813 1 chr7A.!!$R1 504
5 TraesCS3B01G154200 chr7D 478370360 478371092 732 False 208.000000 292 80.282500 1077 1813 2 chr7D.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.104855 TCTGGACGCACATATCTGCC 59.895 55.0 0.0 0.0 33.18 4.85 F
821 1920 0.108472 TGATCAGCTTCCACTCAGCG 60.108 55.0 0.0 0.0 42.55 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 2374 1.178276 CAGTTCGCAGGAGTAGGACT 58.822 55.0 0.00 0.0 0.00 3.85 R
2659 3868 0.034767 TCTTACTCTTCCTCGCCGGA 60.035 55.0 5.05 0.0 41.06 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.278857 CTGGCTAGGCACTACGCG 60.279 66.667 16.16 3.53 43.84 6.01
21 22 3.834799 GGCTAGGCACTACGCGGT 61.835 66.667 12.47 0.00 43.84 5.68
71 72 3.886340 CCGACGAGGAAGACGAGA 58.114 61.111 0.00 0.00 45.00 4.04
80 81 1.746220 AGGAAGACGAGATTCTGACCG 59.254 52.381 0.00 0.00 31.80 4.79
81 82 1.551145 GAAGACGAGATTCTGACCGC 58.449 55.000 0.00 0.00 0.00 5.68
92 93 1.218047 CTGACCGCCGGATTTCTGA 59.782 57.895 11.71 0.00 0.00 3.27
113 114 1.743995 GATTTCGTGTGGGACCCCG 60.744 63.158 8.45 4.51 39.42 5.73
118 119 3.932483 GTGTGGGACCCCGACGTT 61.932 66.667 8.45 0.00 39.42 3.99
123 124 1.680314 GGGACCCCGACGTTAGTCT 60.680 63.158 0.00 0.00 44.93 3.24
135 136 0.172803 GTTAGTCTGACGTGGCGGAT 59.827 55.000 0.00 0.00 0.00 4.18
138 139 2.094659 GTCTGACGTGGCGGATGTG 61.095 63.158 0.00 0.00 0.00 3.21
139 140 2.048222 CTGACGTGGCGGATGTGT 60.048 61.111 0.00 0.00 0.00 3.72
141 142 2.261671 GACGTGGCGGATGTGTCT 59.738 61.111 0.00 0.00 0.00 3.41
144 145 2.662596 GTGGCGGATGTGTCTGGA 59.337 61.111 0.00 0.00 0.00 3.86
155 156 1.824852 TGTGTCTGGACGCACATATCT 59.175 47.619 12.18 0.00 45.71 1.98
157 158 1.212616 GTCTGGACGCACATATCTGC 58.787 55.000 0.00 0.00 0.00 4.26
158 159 0.104855 TCTGGACGCACATATCTGCC 59.895 55.000 0.00 0.00 33.18 4.85
160 161 0.104855 TGGACGCACATATCTGCCTC 59.895 55.000 0.00 0.00 33.18 4.70
167 168 5.793817 ACGCACATATCTGCCTCATATTTA 58.206 37.500 0.00 0.00 33.18 1.40
182 183 7.429374 CTCATATTTAGGCTGGATATGAGGA 57.571 40.000 30.49 15.67 46.86 3.71
183 184 7.187824 TCATATTTAGGCTGGATATGAGGAC 57.812 40.000 21.11 0.00 37.67 3.85
185 186 7.459125 TCATATTTAGGCTGGATATGAGGACTT 59.541 37.037 21.11 0.00 37.67 3.01
186 187 4.963318 TTAGGCTGGATATGAGGACTTG 57.037 45.455 0.00 0.00 0.00 3.16
187 188 1.419387 AGGCTGGATATGAGGACTTGC 59.581 52.381 0.00 0.00 0.00 4.01
188 189 1.141657 GGCTGGATATGAGGACTTGCA 59.858 52.381 0.00 0.00 0.00 4.08
189 190 2.492012 GCTGGATATGAGGACTTGCAG 58.508 52.381 0.00 0.00 0.00 4.41
191 192 3.726607 CTGGATATGAGGACTTGCAGTC 58.273 50.000 7.52 7.52 44.32 3.51
193 194 3.519107 TGGATATGAGGACTTGCAGTCAA 59.481 43.478 15.22 4.28 46.79 3.18
196 197 1.131638 TGAGGACTTGCAGTCAACCT 58.868 50.000 15.22 8.57 46.79 3.50
216 217 1.879380 TGAGCGTTTGAGACCCATTTG 59.121 47.619 0.00 0.00 0.00 2.32
219 220 2.151202 GCGTTTGAGACCCATTTGAGA 58.849 47.619 0.00 0.00 0.00 3.27
229 230 4.098654 AGACCCATTTGAGACGTCTATCTG 59.901 45.833 20.09 13.15 32.15 2.90
242 243 2.100197 TCTATCTGGGTTCGTGACTGG 58.900 52.381 0.00 0.00 0.00 4.00
243 244 2.100197 CTATCTGGGTTCGTGACTGGA 58.900 52.381 0.00 0.00 0.00 3.86
244 245 1.573108 ATCTGGGTTCGTGACTGGAT 58.427 50.000 0.00 0.00 0.00 3.41
252 253 1.144057 CGTGACTGGATAGTGGCCC 59.856 63.158 0.00 0.00 37.25 5.80
253 254 1.144057 GTGACTGGATAGTGGCCCG 59.856 63.158 0.00 0.00 37.25 6.13
254 255 2.063979 TGACTGGATAGTGGCCCGG 61.064 63.158 0.00 0.00 37.25 5.73
298 299 1.763770 CTTTGGGGCCTCTGAGTGT 59.236 57.895 3.07 0.00 0.00 3.55
321 985 5.204409 AGATGCTCTTATCTCTCTGCTTG 57.796 43.478 0.00 0.00 31.97 4.01
447 1125 1.137675 ACTGATTGATGCTCGCTGCTA 59.862 47.619 0.00 0.00 43.37 3.49
459 1137 2.335712 GCTGCTAGTTGGTGCCACC 61.336 63.158 7.01 7.01 39.22 4.61
485 1167 2.738139 CATGCACGCGACACTCCA 60.738 61.111 15.93 0.00 0.00 3.86
486 1168 2.102438 CATGCACGCGACACTCCAT 61.102 57.895 15.93 2.57 0.00 3.41
488 1170 3.188786 GCACGCGACACTCCATCC 61.189 66.667 15.93 0.00 0.00 3.51
489 1171 2.261361 CACGCGACACTCCATCCA 59.739 61.111 15.93 0.00 0.00 3.41
661 1760 1.270252 GCCACCACCCAAACAATCTTG 60.270 52.381 0.00 0.00 0.00 3.02
688 1787 3.691575 TGTCACTTGTCACCTTCCAAAA 58.308 40.909 0.00 0.00 0.00 2.44
689 1788 4.277476 TGTCACTTGTCACCTTCCAAAAT 58.723 39.130 0.00 0.00 0.00 1.82
690 1789 4.338118 TGTCACTTGTCACCTTCCAAAATC 59.662 41.667 0.00 0.00 0.00 2.17
691 1790 3.888930 TCACTTGTCACCTTCCAAAATCC 59.111 43.478 0.00 0.00 0.00 3.01
692 1791 3.636300 CACTTGTCACCTTCCAAAATCCA 59.364 43.478 0.00 0.00 0.00 3.41
693 1792 4.099266 CACTTGTCACCTTCCAAAATCCAA 59.901 41.667 0.00 0.00 0.00 3.53
694 1793 4.714308 ACTTGTCACCTTCCAAAATCCAAA 59.286 37.500 0.00 0.00 0.00 3.28
695 1794 5.366477 ACTTGTCACCTTCCAAAATCCAAAT 59.634 36.000 0.00 0.00 0.00 2.32
696 1795 6.553100 ACTTGTCACCTTCCAAAATCCAAATA 59.447 34.615 0.00 0.00 0.00 1.40
725 1824 1.255033 AGATCCCCTCCTACCCATCA 58.745 55.000 0.00 0.00 0.00 3.07
736 1835 4.124943 CCCATCAGCTGGCTGCCT 62.125 66.667 21.03 0.00 44.46 4.75
737 1836 2.516460 CCATCAGCTGGCTGCCTC 60.516 66.667 21.03 11.60 43.31 4.70
738 1837 2.516460 CATCAGCTGGCTGCCTCC 60.516 66.667 21.03 10.51 43.31 4.30
739 1838 4.172512 ATCAGCTGGCTGCCTCCG 62.173 66.667 21.03 9.37 43.31 4.63
810 1909 1.470098 GCATCCAACGTTTGATCAGCT 59.530 47.619 11.66 0.00 0.00 4.24
812 1911 3.751621 CATCCAACGTTTGATCAGCTTC 58.248 45.455 11.66 0.00 0.00 3.86
813 1912 2.151202 TCCAACGTTTGATCAGCTTCC 58.849 47.619 0.00 0.00 0.00 3.46
814 1913 1.879380 CCAACGTTTGATCAGCTTCCA 59.121 47.619 0.00 0.00 0.00 3.53
815 1914 2.350772 CCAACGTTTGATCAGCTTCCAC 60.351 50.000 0.00 0.00 0.00 4.02
816 1915 2.549754 CAACGTTTGATCAGCTTCCACT 59.450 45.455 0.00 0.00 0.00 4.00
817 1916 2.417719 ACGTTTGATCAGCTTCCACTC 58.582 47.619 0.00 0.00 0.00 3.51
818 1917 2.224281 ACGTTTGATCAGCTTCCACTCA 60.224 45.455 0.00 0.00 0.00 3.41
819 1918 2.414481 CGTTTGATCAGCTTCCACTCAG 59.586 50.000 0.00 0.00 0.00 3.35
820 1919 2.105006 TTGATCAGCTTCCACTCAGC 57.895 50.000 0.00 0.00 37.56 4.26
821 1920 0.108472 TGATCAGCTTCCACTCAGCG 60.108 55.000 0.00 0.00 42.55 5.18
822 1921 1.427592 GATCAGCTTCCACTCAGCGC 61.428 60.000 0.00 0.00 42.55 5.92
823 1922 3.485431 CAGCTTCCACTCAGCGCG 61.485 66.667 0.00 0.00 42.55 6.86
925 2024 1.354040 CTCGCCAGCTTGAGTACTTG 58.646 55.000 0.00 0.00 0.00 3.16
929 2028 2.072298 GCCAGCTTGAGTACTTGACAG 58.928 52.381 0.00 0.00 0.00 3.51
1007 2108 2.746277 GTGTGCGGTGATGGGGAC 60.746 66.667 0.00 0.00 0.00 4.46
1247 2360 3.257873 TCCGGTCGGTCACAAACTAAATA 59.742 43.478 9.36 0.00 36.47 1.40
1248 2361 3.368843 CCGGTCGGTCACAAACTAAATAC 59.631 47.826 0.55 0.00 0.00 1.89
1249 2362 3.059834 CGGTCGGTCACAAACTAAATACG 59.940 47.826 0.00 0.00 0.00 3.06
1250 2363 3.181527 GGTCGGTCACAAACTAAATACGC 60.182 47.826 0.00 0.00 0.00 4.42
1251 2364 2.662637 TCGGTCACAAACTAAATACGCG 59.337 45.455 3.53 3.53 0.00 6.01
1253 2366 3.480825 CGGTCACAAACTAAATACGCGTC 60.481 47.826 18.63 0.00 0.00 5.19
1254 2367 3.676646 GGTCACAAACTAAATACGCGTCT 59.323 43.478 18.63 1.73 0.00 4.18
1256 2369 5.345741 GGTCACAAACTAAATACGCGTCTTA 59.654 40.000 18.63 14.15 0.00 2.10
1258 2371 7.412237 GGTCACAAACTAAATACGCGTCTTATT 60.412 37.037 18.63 7.62 0.00 1.40
1259 2372 7.629845 GTCACAAACTAAATACGCGTCTTATTC 59.370 37.037 18.63 0.00 0.00 1.75
1260 2373 7.543172 TCACAAACTAAATACGCGTCTTATTCT 59.457 33.333 18.63 0.00 0.00 2.40
1261 2374 8.800972 CACAAACTAAATACGCGTCTTATTCTA 58.199 33.333 18.63 0.28 0.00 2.10
1267 2380 7.502120 AAATACGCGTCTTATTCTAGTCCTA 57.498 36.000 18.63 0.00 0.00 2.94
1294 2407 2.159819 GAACTGCGTGCTGAGAGGGA 62.160 60.000 5.71 0.00 0.00 4.20
1296 2409 1.220206 CTGCGTGCTGAGAGGGAAT 59.780 57.895 0.00 0.00 0.00 3.01
1300 2413 1.078848 GTGCTGAGAGGGAATGCGT 60.079 57.895 0.00 0.00 0.00 5.24
1302 2415 2.467826 GCTGAGAGGGAATGCGTGC 61.468 63.158 0.00 0.00 0.00 5.34
1303 2416 2.125552 TGAGAGGGAATGCGTGCG 60.126 61.111 0.00 0.00 0.00 5.34
1568 2697 1.021968 CCGGTGGCATTACTAAAGGC 58.978 55.000 0.00 0.00 41.62 4.35
2215 3358 3.747193 ACGCATCGAAAAGCATAAAGTG 58.253 40.909 8.30 0.00 0.00 3.16
2231 3374 6.455646 GCATAAAGTGGTTGACGAAGATACAG 60.456 42.308 0.00 0.00 0.00 2.74
2233 3376 4.175787 AGTGGTTGACGAAGATACAGAC 57.824 45.455 0.00 0.00 0.00 3.51
2234 3377 2.915463 GTGGTTGACGAAGATACAGACG 59.085 50.000 0.00 0.00 0.00 4.18
2256 3400 1.143838 ACTGCTGTTCGTGCACTGA 59.856 52.632 16.19 11.14 36.37 3.41
2268 3423 0.322366 TGCACTGATTTGGATCGGCA 60.322 50.000 0.00 0.00 41.52 5.69
2269 3424 0.099436 GCACTGATTTGGATCGGCAC 59.901 55.000 0.00 0.00 41.52 5.01
2270 3425 1.452110 CACTGATTTGGATCGGCACA 58.548 50.000 0.00 0.00 41.52 4.57
2272 3427 2.228582 CACTGATTTGGATCGGCACAAA 59.771 45.455 0.00 0.00 41.52 2.83
2273 3428 2.890311 ACTGATTTGGATCGGCACAAAA 59.110 40.909 0.00 0.00 41.52 2.44
2275 3430 4.021192 ACTGATTTGGATCGGCACAAAAAT 60.021 37.500 0.00 0.00 41.52 1.82
2276 3431 4.244066 TGATTTGGATCGGCACAAAAATG 58.756 39.130 0.00 0.00 34.91 2.32
2277 3432 2.077413 TTGGATCGGCACAAAAATGC 57.923 45.000 0.00 0.00 45.34 3.56
2278 3433 1.255882 TGGATCGGCACAAAAATGCT 58.744 45.000 0.00 0.00 45.38 3.79
2332 3505 1.276421 ACAGGTCGCTCAGTAATGCTT 59.724 47.619 0.00 0.00 0.00 3.91
2341 3514 4.100529 GCTCAGTAATGCTTCGTTACGTA 58.899 43.478 4.24 0.00 39.83 3.57
2343 3516 5.231568 GCTCAGTAATGCTTCGTTACGTATT 59.768 40.000 4.24 4.89 39.83 1.89
2352 3525 6.754206 TGCTTCGTTACGTATTGTTGATTAC 58.246 36.000 4.24 0.00 0.00 1.89
2371 3544 0.533755 CGGATCAAGGGCATCTCCAC 60.534 60.000 0.00 0.00 36.21 4.02
2433 3606 2.609427 TGCACAGTGATATGAGAGCC 57.391 50.000 4.15 0.00 0.00 4.70
2436 3609 1.043816 ACAGTGATATGAGAGCCCGG 58.956 55.000 0.00 0.00 0.00 5.73
2438 3611 1.373497 GTGATATGAGAGCCCGGCG 60.373 63.158 3.05 0.00 0.00 6.46
2445 3618 3.682292 GAGAGCCCGGCGTCCATTT 62.682 63.158 6.01 0.00 0.00 2.32
2446 3619 3.508840 GAGCCCGGCGTCCATTTG 61.509 66.667 6.01 0.00 0.00 2.32
2451 3624 1.366111 CCCGGCGTCCATTTGTGTAG 61.366 60.000 6.01 0.00 0.00 2.74
2463 3636 1.493772 TTGTGTAGCTCAAACGTCCG 58.506 50.000 0.00 0.00 0.00 4.79
2464 3637 0.386476 TGTGTAGCTCAAACGTCCGT 59.614 50.000 0.00 0.00 0.00 4.69
2465 3638 1.058404 GTGTAGCTCAAACGTCCGTC 58.942 55.000 0.00 0.00 0.00 4.79
2471 3677 2.616842 AGCTCAAACGTCCGTCAATTTT 59.383 40.909 0.00 0.00 0.00 1.82
2480 3686 3.606346 CGTCCGTCAATTTTATGCAAACC 59.394 43.478 0.00 0.00 0.00 3.27
2488 3694 7.201427 CGTCAATTTTATGCAAACCGAATGATT 60.201 33.333 0.00 0.00 0.00 2.57
2499 3705 8.997323 TGCAAACCGAATGATTTTCATTTAAAT 58.003 25.926 4.37 0.00 46.20 1.40
2566 3774 8.203681 AGTGTTTGGAAGTTAACCTAGTCTAT 57.796 34.615 0.88 0.00 0.00 1.98
2575 3783 6.264088 AGTTAACCTAGTCTATTTCTTCGCG 58.736 40.000 0.00 0.00 0.00 5.87
2577 3785 2.361438 ACCTAGTCTATTTCTTCGCGGG 59.639 50.000 6.13 0.00 0.00 6.13
2578 3786 2.395654 CTAGTCTATTTCTTCGCGGGC 58.604 52.381 6.13 0.00 0.00 6.13
2580 3788 0.804933 GTCTATTTCTTCGCGGGCGT 60.805 55.000 13.21 0.00 40.74 5.68
2581 3789 0.108520 TCTATTTCTTCGCGGGCGTT 60.109 50.000 13.21 0.00 40.74 4.84
2584 3792 1.512156 ATTTCTTCGCGGGCGTTTGT 61.512 50.000 13.21 0.00 40.74 2.83
2601 3810 2.638480 TGTCCCTCAAGTCCTTGTTG 57.362 50.000 6.90 2.38 41.16 3.33
2608 3817 0.951558 CAAGTCCTTGTTGTTCCCCG 59.048 55.000 0.00 0.00 35.92 5.73
2613 3822 1.528309 CTTGTTGTTCCCCGTGCCT 60.528 57.895 0.00 0.00 0.00 4.75
2620 3829 1.689233 TTCCCCGTGCCTAGCATCT 60.689 57.895 0.00 0.00 41.91 2.90
2638 3847 2.907897 CTTCGATGGTCGTGAGCCCC 62.908 65.000 0.00 0.00 41.35 5.80
2640 3849 4.530857 GATGGTCGTGAGCCCCGG 62.531 72.222 0.00 0.00 0.00 5.73
2650 3859 1.906333 GAGCCCCGGGAAGCAAAAA 60.906 57.895 26.32 0.00 0.00 1.94
2651 3860 1.229177 AGCCCCGGGAAGCAAAAAT 60.229 52.632 26.32 0.00 0.00 1.82
2655 3864 0.390209 CCCGGGAAGCAAAAATGCAG 60.390 55.000 18.48 0.00 37.25 4.41
2659 3868 2.288395 CGGGAAGCAAAAATGCAGTTCT 60.288 45.455 0.00 0.00 37.25 3.01
2683 3892 2.482142 GGCGAGGAAGAGTAAGACATGG 60.482 54.545 0.00 0.00 0.00 3.66
2686 3895 3.639094 CGAGGAAGAGTAAGACATGGGAT 59.361 47.826 0.00 0.00 0.00 3.85
2688 3897 5.478679 CGAGGAAGAGTAAGACATGGGATAT 59.521 44.000 0.00 0.00 0.00 1.63
2693 3902 6.678568 AGAGTAAGACATGGGATATGGAAG 57.321 41.667 0.00 0.00 0.00 3.46
2695 3904 7.306013 AGAGTAAGACATGGGATATGGAAGTA 58.694 38.462 0.00 0.00 0.00 2.24
2719 3928 4.668151 TGGGACACAAACGCCTTT 57.332 50.000 0.00 0.00 0.00 3.11
2720 3929 2.111162 TGGGACACAAACGCCTTTG 58.889 52.632 6.63 6.63 42.33 2.77
2726 3935 1.308998 CACAAACGCCTTTGTCTCCT 58.691 50.000 10.39 0.00 45.81 3.69
2730 3939 1.166531 AACGCCTTTGTCTCCTGTGC 61.167 55.000 0.00 0.00 0.00 4.57
2740 3949 1.903183 GTCTCCTGTGCCCTACTCTTT 59.097 52.381 0.00 0.00 0.00 2.52
2747 3956 3.173151 TGTGCCCTACTCTTTCTCATCA 58.827 45.455 0.00 0.00 0.00 3.07
2753 3962 5.337975 GCCCTACTCTTTCTCATCAAAGTCT 60.338 44.000 0.00 0.00 35.25 3.24
2755 3964 5.580297 CCTACTCTTTCTCATCAAAGTCTGC 59.420 44.000 0.00 0.00 35.25 4.26
2757 3966 4.240888 CTCTTTCTCATCAAAGTCTGCGA 58.759 43.478 0.00 0.00 35.25 5.10
2758 3967 3.990469 TCTTTCTCATCAAAGTCTGCGAC 59.010 43.478 0.00 1.15 35.25 5.19
2792 4001 1.561542 GTGGAGGTGAGGTCCATGATT 59.438 52.381 0.00 0.00 45.91 2.57
2819 4028 2.367202 ACGGGCCGATCTCATGGTT 61.367 57.895 35.78 1.87 0.00 3.67
2835 4044 1.288127 GTTGTAGCGACCCGACACT 59.712 57.895 0.00 0.00 0.00 3.55
2836 4045 1.007336 GTTGTAGCGACCCGACACTG 61.007 60.000 0.00 0.00 0.00 3.66
2839 4048 1.601477 TAGCGACCCGACACTGACA 60.601 57.895 0.00 0.00 0.00 3.58
2851 4069 1.299926 ACTGACAGTGCGAACGACC 60.300 57.895 7.47 0.00 0.00 4.79
2871 4089 2.244651 GCAACTGCCGACGTTCTGT 61.245 57.895 0.00 0.00 34.31 3.41
2873 4091 0.597637 CAACTGCCGACGTTCTGTCT 60.598 55.000 0.00 0.00 45.87 3.41
2875 4093 0.240411 ACTGCCGACGTTCTGTCTAC 59.760 55.000 0.00 0.00 45.87 2.59
2904 4143 2.413142 GCCGCTACCGACCTGTAGT 61.413 63.158 0.00 0.00 40.29 2.73
2916 4155 4.156622 TGTAGTCGACGCGAGCGG 62.157 66.667 21.69 4.94 44.69 5.52
2971 4210 4.065789 ACGAAGTTTGGATTCTCCTTGAC 58.934 43.478 0.00 0.00 37.78 3.18
2977 4216 2.278245 TGGATTCTCCTTGACCATGGT 58.722 47.619 19.89 19.89 37.46 3.55
2983 4222 0.539438 TCCTTGACCATGGTTGCCAC 60.539 55.000 20.85 6.17 35.80 5.01
2984 4223 0.827089 CCTTGACCATGGTTGCCACA 60.827 55.000 20.85 9.14 35.80 4.17
2990 4229 2.036256 ATGGTTGCCACAGCCTCC 59.964 61.111 2.11 0.00 35.80 4.30
2991 4230 2.541907 ATGGTTGCCACAGCCTCCT 61.542 57.895 2.11 0.00 35.80 3.69
2992 4231 2.360475 GGTTGCCACAGCCTCCTC 60.360 66.667 0.00 0.00 38.69 3.71
2993 4232 2.743928 GTTGCCACAGCCTCCTCG 60.744 66.667 0.00 0.00 38.69 4.63
2994 4233 4.704833 TTGCCACAGCCTCCTCGC 62.705 66.667 0.00 0.00 38.69 5.03
2996 4235 4.828925 GCCACAGCCTCCTCGCTC 62.829 72.222 0.00 0.00 36.82 5.03
2997 4236 4.504916 CCACAGCCTCCTCGCTCG 62.505 72.222 0.00 0.00 36.82 5.03
2998 4237 3.753434 CACAGCCTCCTCGCTCGT 61.753 66.667 0.00 0.00 36.82 4.18
2999 4238 3.753434 ACAGCCTCCTCGCTCGTG 61.753 66.667 0.00 0.00 36.82 4.35
3000 4239 3.443925 CAGCCTCCTCGCTCGTGA 61.444 66.667 0.00 0.00 36.82 4.35
3001 4240 2.676822 AGCCTCCTCGCTCGTGAA 60.677 61.111 0.00 0.00 32.06 3.18
3002 4241 2.507324 GCCTCCTCGCTCGTGAAC 60.507 66.667 0.00 0.00 0.00 3.18
3003 4242 2.995872 GCCTCCTCGCTCGTGAACT 61.996 63.158 0.00 0.00 0.00 3.01
3004 4243 1.137825 CCTCCTCGCTCGTGAACTC 59.862 63.158 0.00 0.00 0.00 3.01
3005 4244 1.226156 CTCCTCGCTCGTGAACTCG 60.226 63.158 0.00 0.00 0.00 4.18
3006 4245 2.876645 CCTCGCTCGTGAACTCGC 60.877 66.667 0.00 0.00 0.00 5.03
3007 4246 2.876645 CTCGCTCGTGAACTCGCC 60.877 66.667 0.00 0.00 0.00 5.54
3008 4247 4.753877 TCGCTCGTGAACTCGCCG 62.754 66.667 0.00 0.00 0.00 6.46
3010 4249 2.177531 GCTCGTGAACTCGCCGTA 59.822 61.111 0.00 0.00 0.00 4.02
3011 4250 1.868251 GCTCGTGAACTCGCCGTAG 60.868 63.158 0.00 0.00 0.00 3.51
3012 4251 1.792301 CTCGTGAACTCGCCGTAGA 59.208 57.895 0.00 0.00 0.00 2.59
3013 4252 0.377554 CTCGTGAACTCGCCGTAGAT 59.622 55.000 0.00 0.00 0.00 1.98
3014 4253 0.806868 TCGTGAACTCGCCGTAGATT 59.193 50.000 0.00 0.00 0.00 2.40
3015 4254 1.200716 TCGTGAACTCGCCGTAGATTT 59.799 47.619 0.00 0.00 0.00 2.17
3016 4255 1.990563 CGTGAACTCGCCGTAGATTTT 59.009 47.619 0.00 0.00 0.00 1.82
3017 4256 2.222508 CGTGAACTCGCCGTAGATTTTG 60.223 50.000 0.00 0.00 0.00 2.44
3018 4257 2.735134 GTGAACTCGCCGTAGATTTTGT 59.265 45.455 0.00 0.00 0.00 2.83
3019 4258 2.991190 TGAACTCGCCGTAGATTTTGTC 59.009 45.455 0.00 0.00 0.00 3.18
3020 4259 2.005971 ACTCGCCGTAGATTTTGTCC 57.994 50.000 0.00 0.00 0.00 4.02
3021 4260 1.287425 CTCGCCGTAGATTTTGTCCC 58.713 55.000 0.00 0.00 0.00 4.46
3022 4261 0.899720 TCGCCGTAGATTTTGTCCCT 59.100 50.000 0.00 0.00 0.00 4.20
3023 4262 1.006832 CGCCGTAGATTTTGTCCCTG 58.993 55.000 0.00 0.00 0.00 4.45
3024 4263 0.733150 GCCGTAGATTTTGTCCCTGC 59.267 55.000 0.00 0.00 0.00 4.85
3025 4264 1.379527 CCGTAGATTTTGTCCCTGCC 58.620 55.000 0.00 0.00 0.00 4.85
3026 4265 1.339631 CCGTAGATTTTGTCCCTGCCA 60.340 52.381 0.00 0.00 0.00 4.92
3027 4266 2.009774 CGTAGATTTTGTCCCTGCCAG 58.990 52.381 0.00 0.00 0.00 4.85
3028 4267 2.615493 CGTAGATTTTGTCCCTGCCAGT 60.615 50.000 0.00 0.00 0.00 4.00
3029 4268 2.206576 AGATTTTGTCCCTGCCAGTC 57.793 50.000 0.00 0.00 0.00 3.51
3030 4269 1.425066 AGATTTTGTCCCTGCCAGTCA 59.575 47.619 0.00 0.00 0.00 3.41
3031 4270 2.158475 AGATTTTGTCCCTGCCAGTCAA 60.158 45.455 0.00 0.00 0.00 3.18
3032 4271 2.380064 TTTTGTCCCTGCCAGTCAAT 57.620 45.000 0.00 0.00 0.00 2.57
3033 4272 1.619654 TTTGTCCCTGCCAGTCAATG 58.380 50.000 0.00 0.00 0.00 2.82
3034 4273 0.770499 TTGTCCCTGCCAGTCAATGA 59.230 50.000 0.00 0.00 0.00 2.57
3035 4274 0.994247 TGTCCCTGCCAGTCAATGAT 59.006 50.000 0.00 0.00 0.00 2.45
3036 4275 1.340308 TGTCCCTGCCAGTCAATGATG 60.340 52.381 0.00 0.00 0.00 3.07
3037 4276 0.394762 TCCCTGCCAGTCAATGATGC 60.395 55.000 0.00 0.00 0.00 3.91
3038 4277 1.721664 CCCTGCCAGTCAATGATGCG 61.722 60.000 0.00 0.00 0.00 4.73
3039 4278 1.063649 CTGCCAGTCAATGATGCGC 59.936 57.895 0.00 0.00 0.00 6.09
3040 4279 2.023741 GCCAGTCAATGATGCGCG 59.976 61.111 0.00 0.00 0.00 6.86
3041 4280 2.463620 GCCAGTCAATGATGCGCGA 61.464 57.895 12.10 0.00 0.00 5.87
3042 4281 1.640069 CCAGTCAATGATGCGCGAG 59.360 57.895 12.10 0.00 0.00 5.03
3043 4282 1.640069 CAGTCAATGATGCGCGAGG 59.360 57.895 12.10 0.00 0.00 4.63
3044 4283 0.807275 CAGTCAATGATGCGCGAGGA 60.807 55.000 12.10 0.00 0.00 3.71
3045 4284 0.108186 AGTCAATGATGCGCGAGGAA 60.108 50.000 12.10 0.00 32.68 3.36
3046 4285 0.302890 GTCAATGATGCGCGAGGAAG 59.697 55.000 12.10 0.00 32.68 3.46
3047 4286 0.811219 TCAATGATGCGCGAGGAAGG 60.811 55.000 12.10 0.00 32.68 3.46
3048 4287 1.091771 CAATGATGCGCGAGGAAGGT 61.092 55.000 12.10 0.00 32.68 3.50
3049 4288 1.091771 AATGATGCGCGAGGAAGGTG 61.092 55.000 12.10 0.00 32.68 4.00
3050 4289 1.960040 ATGATGCGCGAGGAAGGTGA 61.960 55.000 12.10 0.00 32.68 4.02
3051 4290 1.227380 GATGCGCGAGGAAGGTGAT 60.227 57.895 12.10 0.00 32.68 3.06
3052 4291 1.493950 GATGCGCGAGGAAGGTGATG 61.494 60.000 12.10 0.00 32.68 3.07
3053 4292 1.960040 ATGCGCGAGGAAGGTGATGA 61.960 55.000 12.10 0.00 32.68 2.92
3054 4293 1.227380 GCGCGAGGAAGGTGATGAT 60.227 57.895 12.10 0.00 0.00 2.45
3055 4294 1.493950 GCGCGAGGAAGGTGATGATG 61.494 60.000 12.10 0.00 0.00 3.07
3056 4295 0.179100 CGCGAGGAAGGTGATGATGT 60.179 55.000 0.00 0.00 0.00 3.06
3057 4296 1.067060 CGCGAGGAAGGTGATGATGTA 59.933 52.381 0.00 0.00 0.00 2.29
3058 4297 2.748605 GCGAGGAAGGTGATGATGTAG 58.251 52.381 0.00 0.00 0.00 2.74
3059 4298 2.101582 GCGAGGAAGGTGATGATGTAGT 59.898 50.000 0.00 0.00 0.00 2.73
3060 4299 3.711086 CGAGGAAGGTGATGATGTAGTG 58.289 50.000 0.00 0.00 0.00 2.74
3061 4300 3.462021 GAGGAAGGTGATGATGTAGTGC 58.538 50.000 0.00 0.00 0.00 4.40
3062 4301 2.171448 AGGAAGGTGATGATGTAGTGCC 59.829 50.000 0.00 0.00 0.00 5.01
3063 4302 2.092968 GGAAGGTGATGATGTAGTGCCA 60.093 50.000 0.00 0.00 0.00 4.92
3064 4303 2.698855 AGGTGATGATGTAGTGCCAC 57.301 50.000 0.00 0.00 0.00 5.01
3065 4304 2.191400 AGGTGATGATGTAGTGCCACT 58.809 47.619 1.54 1.54 0.00 4.00
3066 4305 2.093288 AGGTGATGATGTAGTGCCACTG 60.093 50.000 7.83 0.00 0.00 3.66
3067 4306 1.667724 GTGATGATGTAGTGCCACTGC 59.332 52.381 7.83 6.83 38.26 4.40
3068 4307 1.556451 TGATGATGTAGTGCCACTGCT 59.444 47.619 14.12 0.00 38.71 4.24
3069 4308 2.208431 GATGATGTAGTGCCACTGCTC 58.792 52.381 14.12 9.34 38.71 4.26
3070 4309 0.250234 TGATGTAGTGCCACTGCTCC 59.750 55.000 14.12 6.38 38.71 4.70
3071 4310 0.539051 GATGTAGTGCCACTGCTCCT 59.461 55.000 14.12 0.00 38.71 3.69
3072 4311 0.251354 ATGTAGTGCCACTGCTCCTG 59.749 55.000 14.12 0.00 38.71 3.86
3073 4312 1.743252 GTAGTGCCACTGCTCCTGC 60.743 63.158 7.83 0.00 38.71 4.85
3074 4313 3.300934 TAGTGCCACTGCTCCTGCG 62.301 63.158 7.83 0.00 43.34 5.18
3078 4317 3.429141 CCACTGCTCCTGCGCTTG 61.429 66.667 9.73 0.76 43.34 4.01
3079 4318 4.099170 CACTGCTCCTGCGCTTGC 62.099 66.667 9.73 8.24 43.34 4.01
3084 4323 2.818714 CTCCTGCGCTTGCCAGAG 60.819 66.667 9.73 1.74 38.03 3.35
3091 4330 3.482783 GCTTGCCAGAGCGTCGAC 61.483 66.667 5.18 5.18 44.31 4.20
3092 4331 2.049156 CTTGCCAGAGCGTCGACA 60.049 61.111 17.16 0.00 44.31 4.35
3093 4332 2.355837 TTGCCAGAGCGTCGACAC 60.356 61.111 17.16 5.80 44.31 3.67
3094 4333 3.858868 TTGCCAGAGCGTCGACACC 62.859 63.158 17.16 5.71 44.31 4.16
3095 4334 4.057428 GCCAGAGCGTCGACACCT 62.057 66.667 17.16 10.92 0.00 4.00
3096 4335 2.126307 CCAGAGCGTCGACACCTG 60.126 66.667 17.16 17.08 0.00 4.00
3097 4336 2.126307 CAGAGCGTCGACACCTGG 60.126 66.667 17.16 0.00 0.00 4.45
3098 4337 2.597805 AGAGCGTCGACACCTGGT 60.598 61.111 17.16 4.34 0.00 4.00
3099 4338 2.430921 GAGCGTCGACACCTGGTG 60.431 66.667 24.80 24.80 39.75 4.17
3100 4339 4.664677 AGCGTCGACACCTGGTGC 62.665 66.667 26.20 17.21 36.98 5.01
3101 4340 4.961511 GCGTCGACACCTGGTGCA 62.962 66.667 26.20 8.15 36.98 4.57
3102 4341 2.734723 CGTCGACACCTGGTGCAG 60.735 66.667 26.20 19.38 36.98 4.41
3103 4342 2.421739 GTCGACACCTGGTGCAGT 59.578 61.111 26.20 7.49 36.98 4.40
3104 4343 1.956170 GTCGACACCTGGTGCAGTG 60.956 63.158 26.20 13.36 36.98 3.66
3105 4344 3.349006 CGACACCTGGTGCAGTGC 61.349 66.667 26.20 8.58 36.98 4.40
3106 4345 2.980233 GACACCTGGTGCAGTGCC 60.980 66.667 26.20 3.70 36.98 5.01
3107 4346 4.935495 ACACCTGGTGCAGTGCCG 62.935 66.667 26.20 0.60 36.98 5.69
3123 4362 4.154347 CGGCTGCTCCTCCCTCAC 62.154 72.222 0.00 0.00 0.00 3.51
3124 4363 4.154347 GGCTGCTCCTCCCTCACG 62.154 72.222 0.00 0.00 0.00 4.35
3125 4364 3.071206 GCTGCTCCTCCCTCACGA 61.071 66.667 0.00 0.00 0.00 4.35
3126 4365 2.888863 CTGCTCCTCCCTCACGAC 59.111 66.667 0.00 0.00 0.00 4.34
3127 4366 3.057547 CTGCTCCTCCCTCACGACG 62.058 68.421 0.00 0.00 0.00 5.12
3128 4367 3.827898 GCTCCTCCCTCACGACGG 61.828 72.222 0.00 0.00 0.00 4.79
3129 4368 2.361357 CTCCTCCCTCACGACGGT 60.361 66.667 0.00 0.00 0.00 4.83
3130 4369 2.675423 TCCTCCCTCACGACGGTG 60.675 66.667 0.00 0.00 45.78 4.94
3131 4370 2.989824 CCTCCCTCACGACGGTGT 60.990 66.667 0.00 0.00 44.68 4.16
3132 4371 2.571216 CCTCCCTCACGACGGTGTT 61.571 63.158 0.00 0.00 44.68 3.32
3133 4372 1.372997 CTCCCTCACGACGGTGTTG 60.373 63.158 0.00 0.00 44.68 3.33
3134 4373 1.802337 CTCCCTCACGACGGTGTTGA 61.802 60.000 0.00 0.00 44.68 3.18
3135 4374 1.068417 CCCTCACGACGGTGTTGAA 59.932 57.895 0.00 0.00 44.68 2.69
3136 4375 0.944311 CCCTCACGACGGTGTTGAAG 60.944 60.000 0.00 0.00 44.68 3.02
3137 4376 0.249322 CCTCACGACGGTGTTGAAGT 60.249 55.000 0.00 0.00 44.68 3.01
3138 4377 0.852777 CTCACGACGGTGTTGAAGTG 59.147 55.000 0.00 0.00 44.68 3.16
3139 4378 1.149361 TCACGACGGTGTTGAAGTGC 61.149 55.000 0.00 0.00 44.68 4.40
3140 4379 1.153529 ACGACGGTGTTGAAGTGCA 60.154 52.632 0.00 0.00 0.00 4.57
3141 4380 1.275657 CGACGGTGTTGAAGTGCAC 59.724 57.895 9.40 9.40 35.07 4.57
3142 4381 1.425267 CGACGGTGTTGAAGTGCACA 61.425 55.000 21.04 0.00 37.35 4.57
3143 4382 0.944386 GACGGTGTTGAAGTGCACAT 59.056 50.000 21.04 7.05 37.35 3.21
3144 4383 0.662619 ACGGTGTTGAAGTGCACATG 59.337 50.000 21.04 0.00 37.35 3.21
3145 4384 0.661187 CGGTGTTGAAGTGCACATGC 60.661 55.000 21.04 8.14 42.50 4.06
3146 4385 0.661187 GGTGTTGAAGTGCACATGCG 60.661 55.000 21.04 0.00 45.83 4.73
3153 4392 4.471726 GTGCACATGCGCCTGCTC 62.472 66.667 13.17 13.43 45.15 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.064296 CTTCCTCGTCGGACCGATG 59.936 63.158 27.01 27.01 42.97 3.84
60 61 1.746220 CGGTCAGAATCTCGTCTTCCT 59.254 52.381 0.00 0.00 0.00 3.36
61 62 1.799548 GCGGTCAGAATCTCGTCTTCC 60.800 57.143 0.00 0.00 0.00 3.46
71 72 0.541863 AGAAATCCGGCGGTCAGAAT 59.458 50.000 27.32 8.74 0.00 2.40
80 81 2.536928 CGAAATCGTTCAGAAATCCGGC 60.537 50.000 0.00 0.00 32.89 6.13
81 82 3.304382 CGAAATCGTTCAGAAATCCGG 57.696 47.619 0.00 0.00 32.89 5.14
92 93 3.919948 GGGGTCCCACACGAAATCGTT 62.920 57.143 10.98 0.00 42.78 3.85
102 103 2.203611 TAACGTCGGGGTCCCACA 60.204 61.111 10.98 0.00 35.37 4.17
118 119 0.963856 ACATCCGCCACGTCAGACTA 60.964 55.000 0.00 0.00 0.00 2.59
123 124 2.048597 GACACATCCGCCACGTCA 60.049 61.111 0.00 0.00 0.00 4.35
138 139 1.212616 GCAGATATGTGCGTCCAGAC 58.787 55.000 9.32 0.00 32.74 3.51
139 140 0.104855 GGCAGATATGTGCGTCCAGA 59.895 55.000 17.70 0.00 45.00 3.86
141 142 2.211375 AGGCAGATATGTGCGTCCA 58.789 52.632 17.70 0.00 45.00 4.02
144 145 3.969287 ATATGAGGCAGATATGTGCGT 57.031 42.857 18.71 18.71 45.00 5.24
160 161 7.192852 AGTCCTCATATCCAGCCTAAATATG 57.807 40.000 0.00 0.00 35.58 1.78
167 168 1.419387 GCAAGTCCTCATATCCAGCCT 59.581 52.381 0.00 0.00 0.00 4.58
193 194 1.371558 GGGTCTCAAACGCTCAGGT 59.628 57.895 0.00 0.00 37.81 4.00
196 197 1.879380 CAAATGGGTCTCAAACGCTCA 59.121 47.619 0.00 0.00 41.27 4.26
216 217 2.015587 ACGAACCCAGATAGACGTCTC 58.984 52.381 23.89 9.23 0.00 3.36
219 220 1.471684 GTCACGAACCCAGATAGACGT 59.528 52.381 0.00 0.00 34.40 4.34
229 230 1.134788 CCACTATCCAGTCACGAACCC 60.135 57.143 0.00 0.00 30.46 4.11
321 985 2.327568 TCGTGAATCGGACGGTAAAAC 58.672 47.619 0.00 0.00 40.32 2.43
422 1088 1.592081 GCGAGCATCAATCAGTCAGTC 59.408 52.381 0.00 0.00 33.17 3.51
535 1253 4.773117 GTCGAGACACGGCCCGAC 62.773 72.222 11.71 13.03 43.28 4.79
661 1760 1.510480 GGTGACAAGTGACAGGCAGC 61.510 60.000 0.00 0.00 0.00 5.25
688 1787 5.940470 GGGATCTTGTCGCTATTATTTGGAT 59.060 40.000 0.00 0.00 36.87 3.41
689 1788 5.305585 GGGATCTTGTCGCTATTATTTGGA 58.694 41.667 0.00 0.00 36.87 3.53
690 1789 4.455877 GGGGATCTTGTCGCTATTATTTGG 59.544 45.833 0.00 0.00 39.58 3.28
691 1790 5.308825 AGGGGATCTTGTCGCTATTATTTG 58.691 41.667 0.00 0.00 39.58 2.32
692 1791 5.513267 GGAGGGGATCTTGTCGCTATTATTT 60.513 44.000 0.00 0.00 39.58 1.40
693 1792 4.020128 GGAGGGGATCTTGTCGCTATTATT 60.020 45.833 0.00 0.00 39.58 1.40
694 1793 3.515901 GGAGGGGATCTTGTCGCTATTAT 59.484 47.826 0.00 0.00 39.58 1.28
695 1794 2.897969 GGAGGGGATCTTGTCGCTATTA 59.102 50.000 0.00 0.00 39.58 0.98
696 1795 1.694696 GGAGGGGATCTTGTCGCTATT 59.305 52.381 0.00 0.00 39.58 1.73
736 1835 1.228367 GGGCCGTAGATAGGTCGGA 60.228 63.158 7.01 0.00 46.05 4.55
737 1836 2.273912 GGGGCCGTAGATAGGTCGG 61.274 68.421 0.00 0.00 45.94 4.79
738 1837 2.273912 GGGGGCCGTAGATAGGTCG 61.274 68.421 0.00 0.00 33.31 4.79
739 1838 2.273912 CGGGGGCCGTAGATAGGTC 61.274 68.421 0.00 0.00 42.73 3.85
740 1839 2.203596 CGGGGGCCGTAGATAGGT 60.204 66.667 0.00 0.00 42.73 3.08
840 1939 4.994317 TATATGGACGTGCTGTGCTGCC 62.994 54.545 8.99 0.00 40.08 4.85
841 1940 1.091771 ATATGGACGTGCTGTGCTGC 61.092 55.000 8.99 0.00 40.08 5.25
842 1941 2.223537 TATATGGACGTGCTGTGCTG 57.776 50.000 8.99 0.00 40.08 4.41
843 1942 3.611766 CGTATATATGGACGTGCTGTGCT 60.612 47.826 8.99 0.00 40.08 4.40
844 1943 2.661675 CGTATATATGGACGTGCTGTGC 59.338 50.000 8.99 0.00 39.78 4.57
852 1951 0.905175 CGCGCACGTATATATGGACG 59.095 55.000 8.75 9.92 44.57 4.79
917 2016 4.468643 CGAGAGTGAACTGTCAAGTACTC 58.531 47.826 8.18 0.00 40.28 2.59
925 2024 0.319040 TGCAGCGAGAGTGAACTGTC 60.319 55.000 0.00 0.00 33.39 3.51
929 2028 3.163655 GCTGCAGCGAGAGTGAAC 58.836 61.111 25.23 0.00 0.00 3.18
1247 2360 4.450053 AGTAGGACTAGAATAAGACGCGT 58.550 43.478 13.85 13.85 0.00 6.01
1248 2361 4.083908 GGAGTAGGACTAGAATAAGACGCG 60.084 50.000 3.53 3.53 0.00 6.01
1249 2362 5.049267 CAGGAGTAGGACTAGAATAAGACGC 60.049 48.000 0.00 0.00 0.00 5.19
1250 2363 5.049267 GCAGGAGTAGGACTAGAATAAGACG 60.049 48.000 0.00 0.00 0.00 4.18
1251 2364 5.049267 CGCAGGAGTAGGACTAGAATAAGAC 60.049 48.000 0.00 0.00 0.00 3.01
1253 2366 5.064558 TCGCAGGAGTAGGACTAGAATAAG 58.935 45.833 0.00 0.00 0.00 1.73
1254 2367 5.045012 TCGCAGGAGTAGGACTAGAATAA 57.955 43.478 0.00 0.00 0.00 1.40
1256 2369 3.579534 TCGCAGGAGTAGGACTAGAAT 57.420 47.619 0.00 0.00 0.00 2.40
1258 2371 2.239150 AGTTCGCAGGAGTAGGACTAGA 59.761 50.000 0.00 0.00 0.00 2.43
1259 2372 2.356382 CAGTTCGCAGGAGTAGGACTAG 59.644 54.545 0.00 0.00 0.00 2.57
1260 2373 2.366533 CAGTTCGCAGGAGTAGGACTA 58.633 52.381 0.00 0.00 0.00 2.59
1261 2374 1.178276 CAGTTCGCAGGAGTAGGACT 58.822 55.000 0.00 0.00 0.00 3.85
1267 2380 2.356313 CACGCAGTTCGCAGGAGT 60.356 61.111 0.00 0.00 41.61 3.85
2168 3309 4.124970 TCAGGAATTCATTCGCTCATCTG 58.875 43.478 7.93 1.58 37.67 2.90
2173 3314 4.084849 CGTACATCAGGAATTCATTCGCTC 60.085 45.833 7.93 0.00 37.67 5.03
2215 3358 3.427243 CTCGTCTGTATCTTCGTCAACC 58.573 50.000 0.00 0.00 0.00 3.77
2222 3365 2.159310 AGCAGTGCTCGTCTGTATCTTC 60.159 50.000 13.14 0.00 30.62 2.87
2231 3374 3.150895 CGAACAGCAGTGCTCGTC 58.849 61.111 16.58 14.17 37.48 4.20
2233 3376 2.849007 CACGAACAGCAGTGCTCG 59.151 61.111 16.58 18.67 45.80 5.03
2256 3400 3.002102 GCATTTTTGTGCCGATCCAAAT 58.998 40.909 0.00 0.00 39.18 2.32
2268 3423 6.649557 GCCCTATCTACGTATAGCATTTTTGT 59.350 38.462 0.00 0.00 0.00 2.83
2269 3424 6.649141 TGCCCTATCTACGTATAGCATTTTTG 59.351 38.462 0.00 0.00 0.00 2.44
2270 3425 6.765403 TGCCCTATCTACGTATAGCATTTTT 58.235 36.000 0.00 0.00 0.00 1.94
2272 3427 5.715279 TCTGCCCTATCTACGTATAGCATTT 59.285 40.000 0.00 0.00 0.00 2.32
2273 3428 5.125739 GTCTGCCCTATCTACGTATAGCATT 59.874 44.000 0.00 0.00 0.00 3.56
2275 3430 4.008330 GTCTGCCCTATCTACGTATAGCA 58.992 47.826 0.00 0.00 0.00 3.49
2276 3431 4.008330 TGTCTGCCCTATCTACGTATAGC 58.992 47.826 0.00 0.00 0.00 2.97
2277 3432 6.207025 AGTTTGTCTGCCCTATCTACGTATAG 59.793 42.308 0.00 0.00 0.00 1.31
2278 3433 6.066690 AGTTTGTCTGCCCTATCTACGTATA 58.933 40.000 0.00 0.00 0.00 1.47
2332 3505 5.635866 TCCGTAATCAACAATACGTAACGA 58.364 37.500 11.11 0.03 42.41 3.85
2341 3514 3.632145 GCCCTTGATCCGTAATCAACAAT 59.368 43.478 6.41 0.00 46.96 2.71
2343 3516 2.026729 TGCCCTTGATCCGTAATCAACA 60.027 45.455 6.41 2.37 46.96 3.33
2352 3525 0.533755 GTGGAGATGCCCTTGATCCG 60.534 60.000 0.00 0.00 34.97 4.18
2361 3534 4.467084 TTCGGCGGTGGAGATGCC 62.467 66.667 7.21 0.00 45.39 4.40
2364 3537 0.974010 TTAGGTTCGGCGGTGGAGAT 60.974 55.000 7.21 0.00 0.00 2.75
2371 3544 1.374505 TCCGTTTTAGGTTCGGCGG 60.375 57.895 7.21 0.00 43.35 6.13
2433 3606 1.977594 GCTACACAAATGGACGCCGG 61.978 60.000 0.00 0.00 0.00 6.13
2436 3609 1.438651 TGAGCTACACAAATGGACGC 58.561 50.000 0.00 0.00 0.00 5.19
2438 3611 3.250040 ACGTTTGAGCTACACAAATGGAC 59.750 43.478 17.90 1.51 43.90 4.02
2445 3618 0.386476 ACGGACGTTTGAGCTACACA 59.614 50.000 0.00 0.00 0.00 3.72
2446 3619 1.058404 GACGGACGTTTGAGCTACAC 58.942 55.000 0.00 0.00 0.00 2.90
2451 3624 2.681152 AAATTGACGGACGTTTGAGC 57.319 45.000 0.00 0.00 0.00 4.26
2463 3636 6.942886 TCATTCGGTTTGCATAAAATTGAC 57.057 33.333 0.00 0.00 0.00 3.18
2464 3637 8.545229 AAATCATTCGGTTTGCATAAAATTGA 57.455 26.923 0.00 0.00 0.00 2.57
2465 3638 9.264782 GAAAATCATTCGGTTTGCATAAAATTG 57.735 29.630 0.00 0.00 0.00 2.32
2471 3677 9.645059 TTAAATGAAAATCATTCGGTTTGCATA 57.355 25.926 6.09 0.00 45.57 3.14
2537 3745 8.357290 ACTAGGTTAACTTCCAAACACTTTTT 57.643 30.769 5.42 0.00 0.00 1.94
2543 3751 9.498176 GAAATAGACTAGGTTAACTTCCAAACA 57.502 33.333 5.42 0.00 0.00 2.83
2546 3754 9.939802 GAAGAAATAGACTAGGTTAACTTCCAA 57.060 33.333 5.42 0.00 0.00 3.53
2547 3755 8.248945 CGAAGAAATAGACTAGGTTAACTTCCA 58.751 37.037 5.42 0.00 0.00 3.53
2566 3774 2.108344 GACAAACGCCCGCGAAGAAA 62.108 55.000 17.16 0.00 42.83 2.52
2575 3783 1.228154 ACTTGAGGGACAAACGCCC 60.228 57.895 0.00 0.00 46.40 6.13
2577 3785 0.250338 AGGACTTGAGGGACAAACGC 60.250 55.000 0.00 0.00 38.08 4.84
2578 3786 1.873591 CAAGGACTTGAGGGACAAACG 59.126 52.381 6.19 0.00 42.93 3.60
2580 3788 3.287222 CAACAAGGACTTGAGGGACAAA 58.713 45.455 18.15 0.00 42.93 2.83
2581 3789 2.241176 ACAACAAGGACTTGAGGGACAA 59.759 45.455 18.15 0.00 42.93 3.18
2584 3792 2.158667 GGAACAACAAGGACTTGAGGGA 60.159 50.000 18.15 0.00 42.93 4.20
2587 3795 2.230660 GGGGAACAACAAGGACTTGAG 58.769 52.381 18.15 12.02 42.93 3.02
2588 3796 1.476110 CGGGGAACAACAAGGACTTGA 60.476 52.381 18.15 0.00 42.93 3.02
2601 3810 1.523938 GATGCTAGGCACGGGGAAC 60.524 63.158 0.00 0.00 43.04 3.62
2608 3817 1.202580 ACCATCGAAGATGCTAGGCAC 60.203 52.381 4.60 0.00 43.04 5.01
2613 3822 2.021457 TCACGACCATCGAAGATGCTA 58.979 47.619 5.04 0.00 43.74 3.49
2620 3829 2.577059 GGGCTCACGACCATCGAA 59.423 61.111 5.04 0.00 43.74 3.71
2638 3847 2.061028 GAACTGCATTTTTGCTTCCCG 58.939 47.619 0.00 0.00 35.49 5.14
2640 3849 3.320626 GGAGAACTGCATTTTTGCTTCC 58.679 45.455 0.00 0.00 35.49 3.46
2650 3859 2.185350 CTCGCCGGAGAACTGCAT 59.815 61.111 9.83 0.00 43.27 3.96
2651 3860 4.069232 CCTCGCCGGAGAACTGCA 62.069 66.667 9.83 0.00 43.27 4.41
2655 3864 1.139947 CTCTTCCTCGCCGGAGAAC 59.860 63.158 9.83 0.00 44.28 3.01
2659 3868 0.034767 TCTTACTCTTCCTCGCCGGA 60.035 55.000 5.05 0.00 41.06 5.14
2683 3892 4.021102 CCATGTGGGTACTTCCATATCC 57.979 50.000 0.00 0.00 36.66 2.59
2711 3920 1.166531 GCACAGGAGACAAAGGCGTT 61.167 55.000 0.00 0.00 0.00 4.84
2719 3928 0.409876 AGAGTAGGGCACAGGAGACA 59.590 55.000 0.00 0.00 0.00 3.41
2720 3929 1.562783 AAGAGTAGGGCACAGGAGAC 58.437 55.000 0.00 0.00 0.00 3.36
2726 3935 3.173151 TGATGAGAAAGAGTAGGGCACA 58.827 45.455 0.00 0.00 0.00 4.57
2730 3939 6.105333 CAGACTTTGATGAGAAAGAGTAGGG 58.895 44.000 0.00 0.00 36.58 3.53
2772 3981 1.207791 ATCATGGACCTCACCTCCAC 58.792 55.000 0.00 0.00 40.73 4.02
2810 4019 0.535335 GGGTCGCTACAACCATGAGA 59.465 55.000 0.00 0.00 38.62 3.27
2819 4028 1.601477 TCAGTGTCGGGTCGCTACA 60.601 57.895 0.00 0.00 0.00 2.74
2835 4044 2.028484 GGGTCGTTCGCACTGTCA 59.972 61.111 0.00 0.00 0.00 3.58
2836 4045 3.103911 CGGGTCGTTCGCACTGTC 61.104 66.667 0.00 0.00 0.00 3.51
2851 4069 4.072088 GAACGTCGGCAGTTGCGG 62.072 66.667 5.42 5.42 43.26 5.69
2863 4081 0.098376 GGCGATCGTAGACAGAACGT 59.902 55.000 17.81 0.00 42.51 3.99
2898 4137 2.645014 CGCTCGCGTCGACTACAG 60.645 66.667 14.70 7.04 34.35 2.74
2916 4155 3.471399 GCTTTACGAGGCCACGTC 58.529 61.111 31.54 13.77 45.32 4.34
2946 4185 2.789569 GAGAATCCAAACTTCGTCGC 57.210 50.000 0.00 0.00 0.00 5.19
2960 4199 2.450476 GCAACCATGGTCAAGGAGAAT 58.550 47.619 20.07 0.00 0.00 2.40
2965 4204 0.827089 TGTGGCAACCATGGTCAAGG 60.827 55.000 20.07 9.55 35.28 3.61
2971 4210 2.283388 AGGCTGTGGCAACCATGG 60.283 61.111 11.19 11.19 40.87 3.66
2977 4216 4.704833 GCGAGGAGGCTGTGGCAA 62.705 66.667 0.00 0.00 40.87 4.52
2983 4222 2.994671 TTCACGAGCGAGGAGGCTG 61.995 63.158 0.00 0.00 44.93 4.85
2990 4229 2.876645 GGCGAGTTCACGAGCGAG 60.877 66.667 0.00 0.00 35.09 5.03
2991 4230 4.753877 CGGCGAGTTCACGAGCGA 62.754 66.667 0.00 0.00 35.09 4.93
2992 4231 3.656243 TACGGCGAGTTCACGAGCG 62.656 63.158 16.62 0.00 35.09 5.03
2993 4232 1.868251 CTACGGCGAGTTCACGAGC 60.868 63.158 16.62 0.00 35.09 5.03
2994 4233 0.377554 ATCTACGGCGAGTTCACGAG 59.622 55.000 16.62 0.00 35.09 4.18
2995 4234 0.806868 AATCTACGGCGAGTTCACGA 59.193 50.000 16.62 0.00 35.09 4.35
2996 4235 1.625616 AAATCTACGGCGAGTTCACG 58.374 50.000 16.62 0.00 0.00 4.35
2997 4236 2.735134 ACAAAATCTACGGCGAGTTCAC 59.265 45.455 16.62 0.00 0.00 3.18
2998 4237 2.991190 GACAAAATCTACGGCGAGTTCA 59.009 45.455 16.62 0.00 0.00 3.18
2999 4238 2.347755 GGACAAAATCTACGGCGAGTTC 59.652 50.000 16.62 0.00 0.00 3.01
3000 4239 2.344025 GGACAAAATCTACGGCGAGTT 58.656 47.619 16.62 0.00 0.00 3.01
3001 4240 1.405121 GGGACAAAATCTACGGCGAGT 60.405 52.381 16.62 0.00 0.00 4.18
3002 4241 1.134788 AGGGACAAAATCTACGGCGAG 60.135 52.381 16.62 6.98 0.00 5.03
3003 4242 0.899720 AGGGACAAAATCTACGGCGA 59.100 50.000 16.62 0.00 0.00 5.54
3004 4243 1.006832 CAGGGACAAAATCTACGGCG 58.993 55.000 4.80 4.80 0.00 6.46
3005 4244 0.733150 GCAGGGACAAAATCTACGGC 59.267 55.000 0.00 0.00 0.00 5.68
3006 4245 1.339631 TGGCAGGGACAAAATCTACGG 60.340 52.381 0.00 0.00 0.00 4.02
3007 4246 2.009774 CTGGCAGGGACAAAATCTACG 58.990 52.381 6.61 0.00 0.00 3.51
3008 4247 3.010420 GACTGGCAGGGACAAAATCTAC 58.990 50.000 20.34 0.00 0.00 2.59
3009 4248 2.642311 TGACTGGCAGGGACAAAATCTA 59.358 45.455 20.34 0.00 0.00 1.98
3010 4249 1.425066 TGACTGGCAGGGACAAAATCT 59.575 47.619 20.34 0.00 0.00 2.40
3011 4250 1.909700 TGACTGGCAGGGACAAAATC 58.090 50.000 20.34 4.99 0.00 2.17
3012 4251 2.380064 TTGACTGGCAGGGACAAAAT 57.620 45.000 20.34 0.00 0.00 1.82
3013 4252 1.962807 CATTGACTGGCAGGGACAAAA 59.037 47.619 20.34 4.03 0.00 2.44
3014 4253 1.144708 TCATTGACTGGCAGGGACAAA 59.855 47.619 20.34 5.80 0.00 2.83
3015 4254 0.770499 TCATTGACTGGCAGGGACAA 59.230 50.000 20.34 20.05 0.00 3.18
3016 4255 0.994247 ATCATTGACTGGCAGGGACA 59.006 50.000 20.34 12.78 0.00 4.02
3017 4256 1.386533 CATCATTGACTGGCAGGGAC 58.613 55.000 20.34 10.27 0.00 4.46
3018 4257 0.394762 GCATCATTGACTGGCAGGGA 60.395 55.000 20.34 8.35 0.00 4.20
3019 4258 1.721664 CGCATCATTGACTGGCAGGG 61.722 60.000 20.34 2.86 0.00 4.45
3020 4259 1.725665 CGCATCATTGACTGGCAGG 59.274 57.895 20.34 0.00 0.00 4.85
3021 4260 1.063649 GCGCATCATTGACTGGCAG 59.936 57.895 14.16 14.16 0.00 4.85
3022 4261 2.752939 CGCGCATCATTGACTGGCA 61.753 57.895 8.75 0.00 0.00 4.92
3023 4262 2.023741 CGCGCATCATTGACTGGC 59.976 61.111 8.75 0.00 0.00 4.85
3024 4263 1.640069 CTCGCGCATCATTGACTGG 59.360 57.895 8.75 0.00 0.00 4.00
3025 4264 0.807275 TCCTCGCGCATCATTGACTG 60.807 55.000 8.75 0.00 0.00 3.51
3026 4265 0.108186 TTCCTCGCGCATCATTGACT 60.108 50.000 8.75 0.00 0.00 3.41
3027 4266 0.302890 CTTCCTCGCGCATCATTGAC 59.697 55.000 8.75 0.00 0.00 3.18
3028 4267 0.811219 CCTTCCTCGCGCATCATTGA 60.811 55.000 8.75 0.00 0.00 2.57
3029 4268 1.091771 ACCTTCCTCGCGCATCATTG 61.092 55.000 8.75 0.00 0.00 2.82
3030 4269 1.091771 CACCTTCCTCGCGCATCATT 61.092 55.000 8.75 0.00 0.00 2.57
3031 4270 1.522355 CACCTTCCTCGCGCATCAT 60.522 57.895 8.75 0.00 0.00 2.45
3032 4271 1.960040 ATCACCTTCCTCGCGCATCA 61.960 55.000 8.75 0.00 0.00 3.07
3033 4272 1.227380 ATCACCTTCCTCGCGCATC 60.227 57.895 8.75 0.00 0.00 3.91
3034 4273 1.522355 CATCACCTTCCTCGCGCAT 60.522 57.895 8.75 0.00 0.00 4.73
3035 4274 1.960040 ATCATCACCTTCCTCGCGCA 61.960 55.000 8.75 0.00 0.00 6.09
3036 4275 1.227380 ATCATCACCTTCCTCGCGC 60.227 57.895 0.00 0.00 0.00 6.86
3037 4276 0.179100 ACATCATCACCTTCCTCGCG 60.179 55.000 0.00 0.00 0.00 5.87
3038 4277 2.101582 ACTACATCATCACCTTCCTCGC 59.898 50.000 0.00 0.00 0.00 5.03
3039 4278 3.711086 CACTACATCATCACCTTCCTCG 58.289 50.000 0.00 0.00 0.00 4.63
3040 4279 3.462021 GCACTACATCATCACCTTCCTC 58.538 50.000 0.00 0.00 0.00 3.71
3041 4280 2.171448 GGCACTACATCATCACCTTCCT 59.829 50.000 0.00 0.00 0.00 3.36
3042 4281 2.092968 TGGCACTACATCATCACCTTCC 60.093 50.000 0.00 0.00 0.00 3.46
3043 4282 2.939103 GTGGCACTACATCATCACCTTC 59.061 50.000 11.13 0.00 0.00 3.46
3044 4283 2.573462 AGTGGCACTACATCATCACCTT 59.427 45.455 20.61 0.00 0.00 3.50
3045 4284 2.093288 CAGTGGCACTACATCATCACCT 60.093 50.000 21.59 0.00 0.00 4.00
3046 4285 2.283298 CAGTGGCACTACATCATCACC 58.717 52.381 21.59 0.00 0.00 4.02
3047 4286 1.667724 GCAGTGGCACTACATCATCAC 59.332 52.381 21.59 0.00 40.72 3.06
3048 4287 1.556451 AGCAGTGGCACTACATCATCA 59.444 47.619 21.59 0.00 44.61 3.07
3049 4288 2.208431 GAGCAGTGGCACTACATCATC 58.792 52.381 21.59 4.43 44.61 2.92
3050 4289 1.134280 GGAGCAGTGGCACTACATCAT 60.134 52.381 21.59 0.00 44.61 2.45
3051 4290 0.250234 GGAGCAGTGGCACTACATCA 59.750 55.000 21.59 0.00 44.61 3.07
3052 4291 0.539051 AGGAGCAGTGGCACTACATC 59.461 55.000 21.59 17.11 44.61 3.06
3053 4292 0.251354 CAGGAGCAGTGGCACTACAT 59.749 55.000 21.59 9.04 44.61 2.29
3054 4293 1.673477 CAGGAGCAGTGGCACTACA 59.327 57.895 21.59 0.00 44.61 2.74
3055 4294 1.743252 GCAGGAGCAGTGGCACTAC 60.743 63.158 21.59 15.56 44.61 2.73
3056 4295 2.665000 GCAGGAGCAGTGGCACTA 59.335 61.111 21.59 0.00 44.61 2.74
3057 4296 4.694233 CGCAGGAGCAGTGGCACT 62.694 66.667 15.88 15.88 44.61 4.40
3061 4300 3.429141 CAAGCGCAGGAGCAGTGG 61.429 66.667 11.47 0.00 42.27 4.00
3062 4301 4.099170 GCAAGCGCAGGAGCAGTG 62.099 66.667 11.47 0.00 42.27 3.66
3067 4306 2.818714 CTCTGGCAAGCGCAGGAG 60.819 66.667 11.47 3.59 41.24 3.69
3074 4313 3.482783 GTCGACGCTCTGGCAAGC 61.483 66.667 0.00 10.41 38.60 4.01
3075 4314 2.049156 TGTCGACGCTCTGGCAAG 60.049 61.111 11.62 0.00 38.60 4.01
3076 4315 2.355837 GTGTCGACGCTCTGGCAA 60.356 61.111 21.55 0.00 38.60 4.52
3077 4316 4.357947 GGTGTCGACGCTCTGGCA 62.358 66.667 26.79 0.00 38.60 4.92
3078 4317 4.057428 AGGTGTCGACGCTCTGGC 62.057 66.667 26.79 11.21 0.00 4.85
3079 4318 2.126307 CAGGTGTCGACGCTCTGG 60.126 66.667 26.79 11.35 0.00 3.86
3080 4319 2.126307 CCAGGTGTCGACGCTCTG 60.126 66.667 27.03 27.03 0.00 3.35
3081 4320 2.597805 ACCAGGTGTCGACGCTCT 60.598 61.111 26.79 19.09 0.00 4.09
3082 4321 2.430921 CACCAGGTGTCGACGCTC 60.431 66.667 26.79 17.28 0.00 5.03
3083 4322 4.664677 GCACCAGGTGTCGACGCT 62.665 66.667 26.79 11.56 35.75 5.07
3084 4323 4.961511 TGCACCAGGTGTCGACGC 62.962 66.667 21.26 20.76 35.75 5.19
3085 4324 2.734723 CTGCACCAGGTGTCGACG 60.735 66.667 21.26 0.00 35.75 5.12
3086 4325 1.956170 CACTGCACCAGGTGTCGAC 60.956 63.158 21.26 9.11 35.51 4.20
3087 4326 2.421314 CACTGCACCAGGTGTCGA 59.579 61.111 21.26 4.80 35.51 4.20
3088 4327 3.349006 GCACTGCACCAGGTGTCG 61.349 66.667 21.26 14.07 35.51 4.35
3089 4328 2.980233 GGCACTGCACCAGGTGTC 60.980 66.667 21.26 13.46 35.51 3.67
3090 4329 4.935495 CGGCACTGCACCAGGTGT 62.935 66.667 21.26 0.00 35.51 4.16
3106 4345 4.154347 GTGAGGGAGGAGCAGCCG 62.154 72.222 0.00 0.00 43.43 5.52
3107 4346 4.154347 CGTGAGGGAGGAGCAGCC 62.154 72.222 0.00 0.00 0.00 4.85
3108 4347 3.071206 TCGTGAGGGAGGAGCAGC 61.071 66.667 0.00 0.00 0.00 5.25
3109 4348 2.888863 GTCGTGAGGGAGGAGCAG 59.111 66.667 0.00 0.00 0.00 4.24
3110 4349 3.062466 CGTCGTGAGGGAGGAGCA 61.062 66.667 0.00 0.00 0.00 4.26
3111 4350 3.827898 CCGTCGTGAGGGAGGAGC 61.828 72.222 2.43 0.00 38.58 4.70
3112 4351 2.361357 ACCGTCGTGAGGGAGGAG 60.361 66.667 15.03 0.00 39.52 3.69
3113 4352 2.675423 CACCGTCGTGAGGGAGGA 60.675 66.667 15.03 0.00 43.14 3.71
3114 4353 2.571216 AACACCGTCGTGAGGGAGG 61.571 63.158 15.03 8.98 43.14 4.30
3115 4354 1.372997 CAACACCGTCGTGAGGGAG 60.373 63.158 15.03 9.70 43.14 4.30
3116 4355 1.393487 TTCAACACCGTCGTGAGGGA 61.393 55.000 15.03 0.00 43.14 4.20
3117 4356 0.944311 CTTCAACACCGTCGTGAGGG 60.944 60.000 7.04 7.04 43.14 4.30
3118 4357 0.249322 ACTTCAACACCGTCGTGAGG 60.249 55.000 0.00 0.00 43.14 3.86
3119 4358 0.852777 CACTTCAACACCGTCGTGAG 59.147 55.000 0.00 0.00 43.14 3.51
3120 4359 1.149361 GCACTTCAACACCGTCGTGA 61.149 55.000 0.00 0.00 43.14 4.35
3121 4360 1.275657 GCACTTCAACACCGTCGTG 59.724 57.895 0.00 0.00 46.11 4.35
3122 4361 1.153529 TGCACTTCAACACCGTCGT 60.154 52.632 0.00 0.00 0.00 4.34
3123 4362 1.275657 GTGCACTTCAACACCGTCG 59.724 57.895 10.32 0.00 0.00 5.12
3124 4363 0.944386 ATGTGCACTTCAACACCGTC 59.056 50.000 19.41 0.00 35.90 4.79
3125 4364 0.662619 CATGTGCACTTCAACACCGT 59.337 50.000 19.41 0.00 35.90 4.83
3126 4365 0.661187 GCATGTGCACTTCAACACCG 60.661 55.000 19.41 0.00 41.59 4.94
3127 4366 0.661187 CGCATGTGCACTTCAACACC 60.661 55.000 19.41 0.00 42.21 4.16
3128 4367 1.270777 GCGCATGTGCACTTCAACAC 61.271 55.000 25.87 0.00 42.21 3.32
3129 4368 1.008652 GCGCATGTGCACTTCAACA 60.009 52.632 25.87 0.00 42.21 3.33
3130 4369 1.730547 GGCGCATGTGCACTTCAAC 60.731 57.895 30.73 9.46 42.21 3.18
3131 4370 1.898094 AGGCGCATGTGCACTTCAA 60.898 52.632 30.73 0.00 42.21 2.69
3132 4371 2.281692 AGGCGCATGTGCACTTCA 60.282 55.556 30.73 0.00 42.21 3.02
3133 4372 2.177531 CAGGCGCATGTGCACTTC 59.822 61.111 30.73 14.62 42.21 3.01
3134 4373 4.047059 GCAGGCGCATGTGCACTT 62.047 61.111 30.73 14.12 42.21 3.16
3136 4375 4.471726 GAGCAGGCGCATGTGCAC 62.472 66.667 30.73 20.09 42.47 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.