Multiple sequence alignment - TraesCS3B01G153800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G153800 chr3B 100.000 3560 0 0 1 3560 146184204 146180645 0.000000e+00 6575.0
1 TraesCS3B01G153800 chr3B 80.836 694 127 6 1084 1774 534965466 534964776 1.120000e-149 540.0
2 TraesCS3B01G153800 chr3B 78.544 261 52 4 1431 1689 729415073 729415331 6.110000e-38 169.0
3 TraesCS3B01G153800 chr3D 94.160 3082 103 38 1 3035 95247590 95244539 0.000000e+00 4623.0
4 TraesCS3B01G153800 chr3D 80.980 694 126 6 1084 1774 409021999 409021309 2.420000e-151 545.0
5 TraesCS3B01G153800 chr3D 90.361 249 19 4 3197 3441 276000125 275999878 4.430000e-84 322.0
6 TraesCS3B01G153800 chr3A 90.802 3044 157 51 4 2984 113343453 113340470 0.000000e+00 3956.0
7 TraesCS3B01G153800 chr3A 80.980 694 126 6 1084 1774 542202773 542203463 2.420000e-151 545.0
8 TraesCS3B01G153800 chr3A 87.903 248 26 4 3196 3441 691743509 691743264 4.500000e-74 289.0
9 TraesCS3B01G153800 chr3A 87.037 54 7 0 3063 3116 35669042 35668989 1.070000e-05 62.1
10 TraesCS3B01G153800 chr1A 82.403 699 112 10 1081 1774 521629150 521629842 1.830000e-167 599.0
11 TraesCS3B01G153800 chr1D 82.822 652 102 9 1128 1774 426587031 426587677 3.080000e-160 575.0
12 TraesCS3B01G153800 chr1B 81.583 695 120 8 1084 1774 576205534 576206224 5.160000e-158 568.0
13 TraesCS3B01G153800 chr6D 89.516 248 22 4 3197 3441 436237769 436238015 9.600000e-81 311.0
14 TraesCS3B01G153800 chr6D 100.000 37 0 0 3464 3500 11915177 11915141 6.380000e-08 69.4
15 TraesCS3B01G153800 chr7D 84.337 332 29 12 3197 3505 101080173 101080504 1.610000e-78 303.0
16 TraesCS3B01G153800 chr2D 90.351 228 18 3 3213 3436 557640292 557640065 2.690000e-76 296.0
17 TraesCS3B01G153800 chr2D 86.364 242 30 3 3197 3436 651065984 651065744 9.800000e-66 261.0
18 TraesCS3B01G153800 chrUn 86.290 248 30 4 3197 3441 51477341 51477587 2.110000e-67 267.0
19 TraesCS3B01G153800 chrUn 86.290 248 30 4 3197 3441 322554761 322555007 2.110000e-67 267.0
20 TraesCS3B01G153800 chr2B 85.484 248 32 4 3197 3441 133820876 133820630 4.560000e-64 255.0
21 TraesCS3B01G153800 chr7B 86.441 59 8 0 3078 3136 126178326 126178268 8.250000e-07 65.8
22 TraesCS3B01G153800 chr7B 92.683 41 3 0 3078 3118 126175455 126175495 3.840000e-05 60.2
23 TraesCS3B01G153800 chr7B 92.683 41 3 0 3078 3118 126175497 126175537 3.840000e-05 60.2
24 TraesCS3B01G153800 chr7B 92.683 41 3 0 3078 3118 126178368 126178328 3.840000e-05 60.2
25 TraesCS3B01G153800 chr7B 92.683 41 3 0 3078 3118 126221542 126221582 3.840000e-05 60.2
26 TraesCS3B01G153800 chr7B 92.683 41 3 0 3078 3118 126221584 126221624 3.840000e-05 60.2
27 TraesCS3B01G153800 chr7B 100.000 28 0 0 3078 3105 358499429 358499456 6.000000e-03 52.8
28 TraesCS3B01G153800 chr7A 87.234 47 6 0 3059 3105 339893014 339893060 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G153800 chr3B 146180645 146184204 3559 True 6575 6575 100.000 1 3560 1 chr3B.!!$R1 3559
1 TraesCS3B01G153800 chr3B 534964776 534965466 690 True 540 540 80.836 1084 1774 1 chr3B.!!$R2 690
2 TraesCS3B01G153800 chr3D 95244539 95247590 3051 True 4623 4623 94.160 1 3035 1 chr3D.!!$R1 3034
3 TraesCS3B01G153800 chr3D 409021309 409021999 690 True 545 545 80.980 1084 1774 1 chr3D.!!$R3 690
4 TraesCS3B01G153800 chr3A 113340470 113343453 2983 True 3956 3956 90.802 4 2984 1 chr3A.!!$R2 2980
5 TraesCS3B01G153800 chr3A 542202773 542203463 690 False 545 545 80.980 1084 1774 1 chr3A.!!$F1 690
6 TraesCS3B01G153800 chr1A 521629150 521629842 692 False 599 599 82.403 1081 1774 1 chr1A.!!$F1 693
7 TraesCS3B01G153800 chr1D 426587031 426587677 646 False 575 575 82.822 1128 1774 1 chr1D.!!$F1 646
8 TraesCS3B01G153800 chr1B 576205534 576206224 690 False 568 568 81.583 1084 1774 1 chr1B.!!$F1 690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 542 0.683412 TGGATCGGCCTCTCATCATG 59.317 55.000 0.00 0.00 37.63 3.07 F
520 543 0.683973 GGATCGGCCTCTCATCATGT 59.316 55.000 0.00 0.00 0.00 3.21 F
796 852 1.519455 CCTTTAGAGTCCAGCGCGG 60.519 63.158 8.83 11.37 0.00 6.46 F
1710 1786 1.679977 CCTACCGTTCCAGGACCGA 60.680 63.158 8.21 0.00 33.42 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1786 0.390735 GGTACATGCCGACGAGGTTT 60.391 55.000 0.00 0.00 43.70 3.27 R
2001 2077 3.275832 TTGCTGATCGGTCGCGTCA 62.276 57.895 5.77 0.21 0.00 4.35 R
2169 2245 3.744719 CCGCCGTCCTCGAACAGA 61.745 66.667 0.00 0.00 39.71 3.41 R
3174 3293 0.034337 GGCCCGCCAATTCTCGTATA 59.966 55.000 0.00 0.00 35.81 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.038017 CAAGTGCAACGTGTGAGAAATG 58.962 45.455 0.00 0.00 45.86 2.32
115 119 8.515473 ACTAACGCATTTTTGGTTTCTATTTC 57.485 30.769 0.00 0.00 0.00 2.17
121 125 7.360017 CGCATTTTTGGTTTCTATTTCCTTTCC 60.360 37.037 0.00 0.00 0.00 3.13
129 133 6.258947 GGTTTCTATTTCCTTTCCAGATCTCG 59.741 42.308 0.00 0.00 0.00 4.04
178 182 0.750850 GGTGGCATCTAAGGACGCTA 59.249 55.000 0.00 0.00 30.74 4.26
214 219 8.050778 TCTTGACTAACACAAGAAATTGTTGT 57.949 30.769 2.45 2.45 46.68 3.32
404 415 7.356089 TCCGACTAAATAACAGTACCATCAT 57.644 36.000 0.00 0.00 0.00 2.45
471 485 3.659089 CTCGGAACCGACGGCCAAT 62.659 63.158 15.39 0.00 44.01 3.16
497 519 6.778834 AGCATCATAATCCACAAATGAACA 57.221 33.333 0.00 0.00 33.60 3.18
500 522 7.037438 GCATCATAATCCACAAATGAACAGTT 58.963 34.615 0.00 0.00 33.60 3.16
519 542 0.683412 TGGATCGGCCTCTCATCATG 59.317 55.000 0.00 0.00 37.63 3.07
520 543 0.683973 GGATCGGCCTCTCATCATGT 59.316 55.000 0.00 0.00 0.00 3.21
573 598 8.976471 CATATTCAGATACTCTAACTGTGCAAG 58.024 37.037 0.00 0.00 33.93 4.01
649 705 5.291293 ACTTATTTGCGCGTTAATTCACT 57.709 34.783 8.43 0.00 0.00 3.41
650 706 6.411630 ACTTATTTGCGCGTTAATTCACTA 57.588 33.333 8.43 0.00 0.00 2.74
651 707 7.011828 ACTTATTTGCGCGTTAATTCACTAT 57.988 32.000 8.43 0.00 0.00 2.12
781 837 7.977789 TTTTCTTTTTGAAACTCTTTGCCTT 57.022 28.000 0.00 0.00 43.55 4.35
782 838 7.977789 TTTCTTTTTGAAACTCTTTGCCTTT 57.022 28.000 0.00 0.00 39.50 3.11
791 847 4.278975 ACTCTTTGCCTTTAGAGTCCAG 57.721 45.455 0.00 0.00 46.06 3.86
795 851 2.167861 GCCTTTAGAGTCCAGCGCG 61.168 63.158 0.00 0.00 0.00 6.86
796 852 1.519455 CCTTTAGAGTCCAGCGCGG 60.519 63.158 8.83 11.37 0.00 6.46
829 892 2.806244 CCTCGGGGCATCTATTTAAACG 59.194 50.000 0.00 0.00 0.00 3.60
864 927 4.746466 TCCATTCTATTCTCTCCTCTCCC 58.254 47.826 0.00 0.00 0.00 4.30
880 943 4.963878 CCCCCATTCAGTTCTCCG 57.036 61.111 0.00 0.00 0.00 4.63
907 970 6.458232 TCTTTTGTCGAAGGGAAATTTTCA 57.542 33.333 11.09 0.00 0.00 2.69
938 1001 3.118956 TGAAGGAAATTCTCTCCTCTCGC 60.119 47.826 0.00 0.00 42.77 5.03
994 1057 5.692814 TCTTTCATTTGATTCTTGCTCGTG 58.307 37.500 0.00 0.00 0.00 4.35
1112 1188 4.388499 GCGCTTCGAGGTGGGGAA 62.388 66.667 10.31 0.00 0.00 3.97
1680 1756 1.792301 CGTCGTGCTCTTCGTCCTA 59.208 57.895 0.00 0.00 0.00 2.94
1695 1771 1.829533 CCTAGGCGCCGGTTACCTA 60.830 63.158 23.20 15.62 34.92 3.08
1710 1786 1.679977 CCTACCGTTCCAGGACCGA 60.680 63.158 8.21 0.00 33.42 4.69
1798 1874 2.685017 TCCTCCGCCTCATGCACT 60.685 61.111 0.00 0.00 41.33 4.40
1941 2017 3.873883 GACCTCGACGACGGCGAT 61.874 66.667 28.17 13.44 41.64 4.58
2346 2422 1.048724 GGTCGGTGATCATGGAGGGA 61.049 60.000 0.00 0.00 0.00 4.20
2349 2425 0.541392 CGGTGATCATGGAGGGAACA 59.459 55.000 0.00 0.00 0.00 3.18
2988 3105 5.819379 CACAGCCACATAATCTTCATGTACT 59.181 40.000 0.00 0.00 34.88 2.73
2994 3111 7.307632 GCCACATAATCTTCATGTACTGATCAC 60.308 40.741 0.00 0.00 34.88 3.06
3004 3121 5.928264 TCATGTACTGATCACTGTCAAACTG 59.072 40.000 0.00 0.00 0.00 3.16
3035 3154 9.374838 GTCATACATAGATGAATACATGATGCA 57.625 33.333 0.00 0.00 37.58 3.96
3036 3155 9.374838 TCATACATAGATGAATACATGATGCAC 57.625 33.333 0.00 0.00 36.82 4.57
3037 3156 6.716898 ACATAGATGAATACATGATGCACG 57.283 37.500 0.00 0.00 36.82 5.34
3038 3157 6.226052 ACATAGATGAATACATGATGCACGT 58.774 36.000 0.00 0.00 36.82 4.49
3039 3158 6.146673 ACATAGATGAATACATGATGCACGTG 59.853 38.462 12.28 12.28 40.93 4.49
3040 3159 3.249320 AGATGAATACATGATGCACGTGC 59.751 43.478 33.11 33.11 38.94 5.34
3041 3160 2.631267 TGAATACATGATGCACGTGCT 58.369 42.857 37.59 24.51 42.66 4.40
3042 3161 3.791245 TGAATACATGATGCACGTGCTA 58.209 40.909 37.59 25.26 42.66 3.49
3043 3162 3.803778 TGAATACATGATGCACGTGCTAG 59.196 43.478 37.59 24.27 42.66 3.42
3044 3163 2.959507 TACATGATGCACGTGCTAGT 57.040 45.000 37.59 27.76 42.66 2.57
3045 3164 2.959507 ACATGATGCACGTGCTAGTA 57.040 45.000 37.59 20.80 42.66 1.82
3046 3165 2.540515 ACATGATGCACGTGCTAGTAC 58.459 47.619 37.59 23.54 42.66 2.73
3047 3166 2.166459 ACATGATGCACGTGCTAGTACT 59.834 45.455 37.59 17.11 42.66 2.73
3048 3167 2.561733 TGATGCACGTGCTAGTACTC 57.438 50.000 37.59 23.38 42.66 2.59
3049 3168 1.134367 TGATGCACGTGCTAGTACTCC 59.866 52.381 37.59 18.47 42.66 3.85
3050 3169 0.460311 ATGCACGTGCTAGTACTCCC 59.540 55.000 37.59 8.73 42.66 4.30
3051 3170 0.611062 TGCACGTGCTAGTACTCCCT 60.611 55.000 37.59 0.00 42.66 4.20
3052 3171 0.100861 GCACGTGCTAGTACTCCCTC 59.899 60.000 32.55 0.00 38.21 4.30
3053 3172 0.739561 CACGTGCTAGTACTCCCTCC 59.260 60.000 0.82 0.00 0.00 4.30
3054 3173 0.395448 ACGTGCTAGTACTCCCTCCC 60.395 60.000 9.40 0.00 0.00 4.30
3055 3174 0.106619 CGTGCTAGTACTCCCTCCCT 60.107 60.000 9.40 0.00 0.00 4.20
3056 3175 1.685491 CGTGCTAGTACTCCCTCCCTT 60.685 57.143 9.40 0.00 0.00 3.95
3057 3176 2.033372 GTGCTAGTACTCCCTCCCTTC 58.967 57.143 0.00 0.00 0.00 3.46
3058 3177 1.320507 GCTAGTACTCCCTCCCTTCG 58.679 60.000 0.00 0.00 0.00 3.79
3059 3178 1.133853 GCTAGTACTCCCTCCCTTCGA 60.134 57.143 0.00 0.00 0.00 3.71
3060 3179 2.489437 GCTAGTACTCCCTCCCTTCGAT 60.489 54.545 0.00 0.00 0.00 3.59
3061 3180 2.850695 AGTACTCCCTCCCTTCGATT 57.149 50.000 0.00 0.00 0.00 3.34
3062 3181 2.668625 AGTACTCCCTCCCTTCGATTC 58.331 52.381 0.00 0.00 0.00 2.52
3063 3182 2.024273 AGTACTCCCTCCCTTCGATTCA 60.024 50.000 0.00 0.00 0.00 2.57
3064 3183 2.182516 ACTCCCTCCCTTCGATTCAT 57.817 50.000 0.00 0.00 0.00 2.57
3065 3184 3.330126 ACTCCCTCCCTTCGATTCATA 57.670 47.619 0.00 0.00 0.00 2.15
3066 3185 3.863086 ACTCCCTCCCTTCGATTCATAT 58.137 45.455 0.00 0.00 0.00 1.78
3067 3186 4.235372 ACTCCCTCCCTTCGATTCATATT 58.765 43.478 0.00 0.00 0.00 1.28
3068 3187 5.403512 ACTCCCTCCCTTCGATTCATATTA 58.596 41.667 0.00 0.00 0.00 0.98
3069 3188 6.026186 ACTCCCTCCCTTCGATTCATATTAT 58.974 40.000 0.00 0.00 0.00 1.28
3070 3189 6.502158 ACTCCCTCCCTTCGATTCATATTATT 59.498 38.462 0.00 0.00 0.00 1.40
3071 3190 7.017651 ACTCCCTCCCTTCGATTCATATTATTT 59.982 37.037 0.00 0.00 0.00 1.40
3072 3191 8.444010 TCCCTCCCTTCGATTCATATTATTTA 57.556 34.615 0.00 0.00 0.00 1.40
3073 3192 8.319146 TCCCTCCCTTCGATTCATATTATTTAC 58.681 37.037 0.00 0.00 0.00 2.01
3074 3193 7.553044 CCCTCCCTTCGATTCATATTATTTACC 59.447 40.741 0.00 0.00 0.00 2.85
3075 3194 7.277981 CCTCCCTTCGATTCATATTATTTACCG 59.722 40.741 0.00 0.00 0.00 4.02
3076 3195 7.673180 TCCCTTCGATTCATATTATTTACCGT 58.327 34.615 0.00 0.00 0.00 4.83
3077 3196 8.152246 TCCCTTCGATTCATATTATTTACCGTT 58.848 33.333 0.00 0.00 0.00 4.44
3078 3197 8.440833 CCCTTCGATTCATATTATTTACCGTTC 58.559 37.037 0.00 0.00 0.00 3.95
3079 3198 8.984764 CCTTCGATTCATATTATTTACCGTTCA 58.015 33.333 0.00 0.00 0.00 3.18
3083 3202 9.923786 CGATTCATATTATTTACCGTTCAAACA 57.076 29.630 0.00 0.00 0.00 2.83
3092 3211 9.661563 TTATTTACCGTTCAAACAGATGTATCT 57.338 29.630 0.00 0.00 37.72 1.98
3094 3213 8.697846 TTTACCGTTCAAACAGATGTATCTAG 57.302 34.615 0.00 0.00 34.85 2.43
3095 3214 6.525578 ACCGTTCAAACAGATGTATCTAGA 57.474 37.500 0.00 0.00 34.85 2.43
3096 3215 7.113658 ACCGTTCAAACAGATGTATCTAGAT 57.886 36.000 10.73 10.73 34.85 1.98
3097 3216 6.980978 ACCGTTCAAACAGATGTATCTAGATG 59.019 38.462 15.79 1.20 34.85 2.90
3098 3217 6.980978 CCGTTCAAACAGATGTATCTAGATGT 59.019 38.462 15.79 1.89 34.85 3.06
3099 3218 8.135529 CCGTTCAAACAGATGTATCTAGATGTA 58.864 37.037 15.79 4.44 34.85 2.29
3100 3219 9.684448 CGTTCAAACAGATGTATCTAGATGTAT 57.316 33.333 15.79 9.11 34.85 2.29
3164 3283 9.872684 ATGGATAGAAAGGAATACATCAATTGT 57.127 29.630 5.13 0.00 42.62 2.71
3165 3284 9.699410 TGGATAGAAAGGAATACATCAATTGTT 57.301 29.630 5.13 0.00 39.87 2.83
3166 3285 9.956720 GGATAGAAAGGAATACATCAATTGTTG 57.043 33.333 13.75 13.75 39.87 3.33
3188 3307 9.419297 TGTTGATATACTTATACGAGAATTGGC 57.581 33.333 0.00 0.00 0.00 4.52
3189 3308 8.584600 GTTGATATACTTATACGAGAATTGGCG 58.415 37.037 0.00 0.00 0.00 5.69
3190 3309 7.255569 TGATATACTTATACGAGAATTGGCGG 58.744 38.462 0.00 0.00 0.00 6.13
3191 3310 3.107642 ACTTATACGAGAATTGGCGGG 57.892 47.619 0.00 0.00 0.00 6.13
3192 3311 1.798813 CTTATACGAGAATTGGCGGGC 59.201 52.381 0.00 0.00 0.00 6.13
3193 3312 0.034337 TATACGAGAATTGGCGGGCC 59.966 55.000 1.86 1.86 0.00 5.80
3194 3313 1.978455 ATACGAGAATTGGCGGGCCA 61.978 55.000 8.62 8.62 45.63 5.36
3202 3321 3.614806 TGGCGGGCCAATGAATTC 58.385 55.556 10.53 0.00 44.12 2.17
3203 3322 2.412937 GGCGGGCCAATGAATTCG 59.587 61.111 4.39 0.00 35.81 3.34
3204 3323 2.412937 GCGGGCCAATGAATTCGG 59.587 61.111 4.39 0.00 0.00 4.30
3205 3324 3.119193 CGGGCCAATGAATTCGGG 58.881 61.111 4.39 3.73 0.00 5.14
3206 3325 1.752694 CGGGCCAATGAATTCGGGT 60.753 57.895 4.39 0.00 0.00 5.28
3207 3326 1.815866 GGGCCAATGAATTCGGGTG 59.184 57.895 4.39 4.68 0.00 4.61
3208 3327 1.141665 GGCCAATGAATTCGGGTGC 59.858 57.895 0.00 6.82 0.00 5.01
3209 3328 1.141665 GCCAATGAATTCGGGTGCC 59.858 57.895 11.00 0.00 0.00 5.01
3210 3329 1.603236 GCCAATGAATTCGGGTGCCA 61.603 55.000 11.00 0.00 0.00 4.92
3211 3330 0.173255 CCAATGAATTCGGGTGCCAC 59.827 55.000 0.04 0.00 0.00 5.01
3212 3331 0.179166 CAATGAATTCGGGTGCCACG 60.179 55.000 0.04 0.00 0.00 4.94
3213 3332 1.312371 AATGAATTCGGGTGCCACGG 61.312 55.000 0.04 0.00 0.00 4.94
3214 3333 3.131478 GAATTCGGGTGCCACGGG 61.131 66.667 0.00 0.00 0.00 5.28
3215 3334 3.615509 GAATTCGGGTGCCACGGGA 62.616 63.158 0.00 0.00 0.00 5.14
3216 3335 3.622060 AATTCGGGTGCCACGGGAG 62.622 63.158 0.00 0.00 0.00 4.30
3225 3344 3.625897 CCACGGGAGCACCTCACA 61.626 66.667 0.00 0.00 32.66 3.58
3226 3345 2.665000 CACGGGAGCACCTCACAT 59.335 61.111 0.00 0.00 32.66 3.21
3227 3346 1.003355 CACGGGAGCACCTCACATT 60.003 57.895 0.00 0.00 32.66 2.71
3228 3347 0.249120 CACGGGAGCACCTCACATTA 59.751 55.000 0.00 0.00 32.66 1.90
3229 3348 0.537188 ACGGGAGCACCTCACATTAG 59.463 55.000 0.00 0.00 32.66 1.73
3230 3349 0.179073 CGGGAGCACCTCACATTAGG 60.179 60.000 0.00 0.00 42.82 2.69
3241 3360 2.496899 CACATTAGGTGCTCCCAGTT 57.503 50.000 0.00 0.00 41.36 3.16
3242 3361 2.795329 CACATTAGGTGCTCCCAGTTT 58.205 47.619 0.00 0.00 41.36 2.66
3243 3362 2.749621 CACATTAGGTGCTCCCAGTTTC 59.250 50.000 0.00 0.00 41.36 2.78
3244 3363 2.290960 ACATTAGGTGCTCCCAGTTTCC 60.291 50.000 0.00 0.00 34.66 3.13
3245 3364 1.440618 TTAGGTGCTCCCAGTTTCCA 58.559 50.000 0.00 0.00 34.66 3.53
3246 3365 1.440618 TAGGTGCTCCCAGTTTCCAA 58.559 50.000 0.00 0.00 34.66 3.53
3247 3366 0.555769 AGGTGCTCCCAGTTTCCAAA 59.444 50.000 0.00 0.00 34.66 3.28
3248 3367 1.063266 AGGTGCTCCCAGTTTCCAAAA 60.063 47.619 0.00 0.00 34.66 2.44
3249 3368 1.970640 GGTGCTCCCAGTTTCCAAAAT 59.029 47.619 0.00 0.00 0.00 1.82
3250 3369 2.289010 GGTGCTCCCAGTTTCCAAAATG 60.289 50.000 0.00 0.00 34.07 2.32
3251 3370 1.344114 TGCTCCCAGTTTCCAAAATGC 59.656 47.619 0.00 0.00 33.03 3.56
3252 3371 1.344114 GCTCCCAGTTTCCAAAATGCA 59.656 47.619 0.00 0.00 33.03 3.96
3253 3372 2.867647 GCTCCCAGTTTCCAAAATGCAC 60.868 50.000 0.00 0.00 33.03 4.57
3254 3373 2.364970 CTCCCAGTTTCCAAAATGCACA 59.635 45.455 0.00 0.00 33.03 4.57
3255 3374 2.971330 TCCCAGTTTCCAAAATGCACAT 59.029 40.909 0.00 0.00 33.03 3.21
3256 3375 3.390639 TCCCAGTTTCCAAAATGCACATT 59.609 39.130 0.00 0.00 33.03 2.71
3257 3376 4.136051 CCCAGTTTCCAAAATGCACATTT 58.864 39.130 2.77 2.77 42.35 2.32
3258 3377 5.070981 TCCCAGTTTCCAAAATGCACATTTA 59.929 36.000 8.92 0.00 39.88 1.40
3259 3378 5.762218 CCCAGTTTCCAAAATGCACATTTAA 59.238 36.000 8.92 0.00 39.88 1.52
3260 3379 6.261826 CCCAGTTTCCAAAATGCACATTTAAA 59.738 34.615 8.92 4.22 39.88 1.52
3261 3380 7.040548 CCCAGTTTCCAAAATGCACATTTAAAT 60.041 33.333 8.92 0.00 39.88 1.40
3262 3381 7.804129 CCAGTTTCCAAAATGCACATTTAAATG 59.196 33.333 23.60 23.60 39.88 2.32
3264 3383 8.901793 AGTTTCCAAAATGCACATTTAAATGTT 58.098 25.926 27.33 13.51 46.95 2.71
3265 3384 9.513727 GTTTCCAAAATGCACATTTAAATGTTT 57.486 25.926 27.33 18.03 46.95 2.83
3266 3385 9.727627 TTTCCAAAATGCACATTTAAATGTTTC 57.272 25.926 27.33 21.59 46.95 2.78
3267 3386 8.442632 TCCAAAATGCACATTTAAATGTTTCA 57.557 26.923 27.33 25.39 46.95 2.69
3268 3387 8.896744 TCCAAAATGCACATTTAAATGTTTCAA 58.103 25.926 27.33 15.14 46.95 2.69
3269 3388 9.512435 CCAAAATGCACATTTAAATGTTTCAAA 57.488 25.926 27.33 13.64 46.95 2.69
3309 3428 5.508567 TGGATGTTACCATGACATGAATGT 58.491 37.500 17.24 8.80 37.83 2.71
3310 3429 6.657875 TGGATGTTACCATGACATGAATGTA 58.342 36.000 17.24 7.83 37.83 2.29
3311 3430 6.542005 TGGATGTTACCATGACATGAATGTAC 59.458 38.462 17.24 7.81 37.83 2.90
3312 3431 6.542005 GGATGTTACCATGACATGAATGTACA 59.458 38.462 17.24 12.49 41.95 2.90
3313 3432 7.066887 GGATGTTACCATGACATGAATGTACAA 59.933 37.037 17.24 2.70 41.95 2.41
3314 3433 7.936496 TGTTACCATGACATGAATGTACAAT 57.064 32.000 17.24 0.00 41.95 2.71
3315 3434 7.984391 TGTTACCATGACATGAATGTACAATC 58.016 34.615 17.24 0.73 41.95 2.67
3316 3435 7.066887 TGTTACCATGACATGAATGTACAATCC 59.933 37.037 17.24 0.00 41.95 3.01
3317 3436 4.889409 ACCATGACATGAATGTACAATCCC 59.111 41.667 17.24 0.00 41.95 3.85
3318 3437 5.135383 CCATGACATGAATGTACAATCCCT 58.865 41.667 17.24 0.00 41.95 4.20
3319 3438 6.126507 ACCATGACATGAATGTACAATCCCTA 60.127 38.462 17.24 0.00 41.95 3.53
3320 3439 6.772233 CCATGACATGAATGTACAATCCCTAA 59.228 38.462 17.24 0.00 41.95 2.69
3321 3440 7.285172 CCATGACATGAATGTACAATCCCTAAA 59.715 37.037 17.24 0.00 41.95 1.85
3322 3441 8.685427 CATGACATGAATGTACAATCCCTAAAA 58.315 33.333 10.03 0.00 41.95 1.52
3323 3442 8.642935 TGACATGAATGTACAATCCCTAAAAA 57.357 30.769 8.44 0.00 41.95 1.94
3324 3443 9.253832 TGACATGAATGTACAATCCCTAAAAAT 57.746 29.630 8.44 0.00 41.95 1.82
3352 3471 9.452065 TCAAATCAAAATTTCAAATGCACATTG 57.548 25.926 7.57 7.57 32.69 2.82
3353 3472 9.452065 CAAATCAAAATTTCAAATGCACATTGA 57.548 25.926 11.62 11.62 32.69 2.57
3354 3473 9.672086 AAATCAAAATTTCAAATGCACATTGAG 57.328 25.926 14.36 5.16 28.70 3.02
3355 3474 8.610248 ATCAAAATTTCAAATGCACATTGAGA 57.390 26.923 14.36 11.69 0.00 3.27
3356 3475 8.434733 TCAAAATTTCAAATGCACATTGAGAA 57.565 26.923 14.36 12.36 0.00 2.87
3357 3476 8.890718 TCAAAATTTCAAATGCACATTGAGAAA 58.109 25.926 18.52 18.52 38.63 2.52
3358 3477 8.949953 CAAAATTTCAAATGCACATTGAGAAAC 58.050 29.630 18.56 0.00 37.89 2.78
3359 3478 7.789273 AATTTCAAATGCACATTGAGAAACA 57.211 28.000 18.56 6.23 37.89 2.83
3360 3479 7.789273 ATTTCAAATGCACATTGAGAAACAA 57.211 28.000 18.56 8.14 42.95 2.83
3361 3480 6.831727 TTCAAATGCACATTGAGAAACAAG 57.168 33.333 14.36 0.00 42.02 3.16
3362 3481 6.146601 TCAAATGCACATTGAGAAACAAGA 57.853 33.333 11.62 0.00 42.02 3.02
3363 3482 6.571605 TCAAATGCACATTGAGAAACAAGAA 58.428 32.000 11.62 0.00 42.02 2.52
3364 3483 7.040494 TCAAATGCACATTGAGAAACAAGAAA 58.960 30.769 11.62 0.00 42.02 2.52
3365 3484 7.223193 TCAAATGCACATTGAGAAACAAGAAAG 59.777 33.333 11.62 0.00 42.02 2.62
3366 3485 5.833406 TGCACATTGAGAAACAAGAAAGA 57.167 34.783 0.00 0.00 42.02 2.52
3367 3486 5.581605 TGCACATTGAGAAACAAGAAAGAC 58.418 37.500 0.00 0.00 42.02 3.01
3368 3487 5.125257 TGCACATTGAGAAACAAGAAAGACA 59.875 36.000 0.00 0.00 42.02 3.41
3369 3488 6.035843 GCACATTGAGAAACAAGAAAGACAA 58.964 36.000 0.00 0.00 42.02 3.18
3370 3489 6.531240 GCACATTGAGAAACAAGAAAGACAAA 59.469 34.615 0.00 0.00 42.02 2.83
3371 3490 7.223387 GCACATTGAGAAACAAGAAAGACAAAT 59.777 33.333 0.00 0.00 42.02 2.32
3372 3491 8.749499 CACATTGAGAAACAAGAAAGACAAATC 58.251 33.333 0.00 0.00 42.02 2.17
3373 3492 7.922811 ACATTGAGAAACAAGAAAGACAAATCC 59.077 33.333 0.00 0.00 42.02 3.01
3374 3493 7.403312 TTGAGAAACAAGAAAGACAAATCCA 57.597 32.000 0.00 0.00 34.20 3.41
3375 3494 7.031226 TGAGAAACAAGAAAGACAAATCCAG 57.969 36.000 0.00 0.00 0.00 3.86
3376 3495 5.836347 AGAAACAAGAAAGACAAATCCAGC 58.164 37.500 0.00 0.00 0.00 4.85
3377 3496 5.360714 AGAAACAAGAAAGACAAATCCAGCA 59.639 36.000 0.00 0.00 0.00 4.41
3378 3497 5.796424 AACAAGAAAGACAAATCCAGCAT 57.204 34.783 0.00 0.00 0.00 3.79
3379 3498 5.130292 ACAAGAAAGACAAATCCAGCATG 57.870 39.130 0.00 0.00 0.00 4.06
3380 3499 4.828939 ACAAGAAAGACAAATCCAGCATGA 59.171 37.500 0.00 0.00 39.69 3.07
3381 3500 5.302568 ACAAGAAAGACAAATCCAGCATGAA 59.697 36.000 0.00 0.00 39.69 2.57
3382 3501 6.014840 ACAAGAAAGACAAATCCAGCATGAAT 60.015 34.615 0.00 0.00 39.69 2.57
3383 3502 5.962433 AGAAAGACAAATCCAGCATGAATG 58.038 37.500 0.00 0.00 39.69 2.67
3384 3503 5.479375 AGAAAGACAAATCCAGCATGAATGT 59.521 36.000 0.00 0.00 39.69 2.71
3385 3504 5.733620 AAGACAAATCCAGCATGAATGTT 57.266 34.783 0.00 0.00 39.69 2.71
3386 3505 5.733620 AGACAAATCCAGCATGAATGTTT 57.266 34.783 0.00 0.00 39.69 2.83
3387 3506 6.105397 AGACAAATCCAGCATGAATGTTTT 57.895 33.333 0.00 0.00 39.69 2.43
3388 3507 5.929992 AGACAAATCCAGCATGAATGTTTTG 59.070 36.000 0.00 9.09 39.69 2.44
3389 3508 4.453136 ACAAATCCAGCATGAATGTTTTGC 59.547 37.500 0.00 0.00 39.69 3.68
3390 3509 3.965379 ATCCAGCATGAATGTTTTGCA 57.035 38.095 0.00 0.00 39.69 4.08
3391 3510 3.306917 TCCAGCATGAATGTTTTGCAG 57.693 42.857 0.00 0.00 39.69 4.41
3392 3511 2.892215 TCCAGCATGAATGTTTTGCAGA 59.108 40.909 0.00 0.00 39.69 4.26
3393 3512 3.321396 TCCAGCATGAATGTTTTGCAGAA 59.679 39.130 0.00 0.00 39.69 3.02
3394 3513 4.059511 CCAGCATGAATGTTTTGCAGAAA 58.940 39.130 0.00 0.00 39.69 2.52
3395 3514 4.512198 CCAGCATGAATGTTTTGCAGAAAA 59.488 37.500 0.00 0.00 39.69 2.29
3396 3515 5.180492 CCAGCATGAATGTTTTGCAGAAAAT 59.820 36.000 0.00 0.00 39.69 1.82
3397 3516 6.304126 CAGCATGAATGTTTTGCAGAAAATC 58.696 36.000 0.00 0.00 39.69 2.17
3398 3517 5.410439 AGCATGAATGTTTTGCAGAAAATCC 59.590 36.000 0.00 0.00 38.84 3.01
3399 3518 5.391203 GCATGAATGTTTTGCAGAAAATCCC 60.391 40.000 0.00 0.00 36.40 3.85
3400 3519 4.640364 TGAATGTTTTGCAGAAAATCCCC 58.360 39.130 0.00 0.00 33.63 4.81
3401 3520 3.701205 ATGTTTTGCAGAAAATCCCCC 57.299 42.857 0.00 0.00 33.63 5.40
3402 3521 2.402564 TGTTTTGCAGAAAATCCCCCA 58.597 42.857 0.00 0.00 33.63 4.96
3403 3522 2.368221 TGTTTTGCAGAAAATCCCCCAG 59.632 45.455 0.00 0.00 33.63 4.45
3404 3523 2.632512 GTTTTGCAGAAAATCCCCCAGA 59.367 45.455 0.00 0.00 33.63 3.86
3405 3524 1.923356 TTGCAGAAAATCCCCCAGAC 58.077 50.000 0.00 0.00 0.00 3.51
3406 3525 0.776810 TGCAGAAAATCCCCCAGACA 59.223 50.000 0.00 0.00 0.00 3.41
3407 3526 1.358787 TGCAGAAAATCCCCCAGACAT 59.641 47.619 0.00 0.00 0.00 3.06
3408 3527 2.225343 TGCAGAAAATCCCCCAGACATT 60.225 45.455 0.00 0.00 0.00 2.71
3409 3528 2.833943 GCAGAAAATCCCCCAGACATTT 59.166 45.455 0.00 0.00 0.00 2.32
3410 3529 3.118992 GCAGAAAATCCCCCAGACATTTC 60.119 47.826 0.00 0.00 35.40 2.17
3411 3530 3.448660 CAGAAAATCCCCCAGACATTTCC 59.551 47.826 0.00 0.00 35.61 3.13
3412 3531 3.077391 AGAAAATCCCCCAGACATTTCCA 59.923 43.478 0.00 0.00 35.61 3.53
3413 3532 3.558608 AAATCCCCCAGACATTTCCAA 57.441 42.857 0.00 0.00 0.00 3.53
3414 3533 3.558608 AATCCCCCAGACATTTCCAAA 57.441 42.857 0.00 0.00 0.00 3.28
3415 3534 3.558608 ATCCCCCAGACATTTCCAAAA 57.441 42.857 0.00 0.00 0.00 2.44
3416 3535 3.558608 TCCCCCAGACATTTCCAAAAT 57.441 42.857 0.00 0.00 0.00 1.82
3417 3536 3.172339 TCCCCCAGACATTTCCAAAATG 58.828 45.455 10.13 10.13 0.00 2.32
3418 3537 3.172339 CCCCCAGACATTTCCAAAATGA 58.828 45.455 16.92 0.00 0.00 2.57
3419 3538 3.055891 CCCCCAGACATTTCCAAAATGAC 60.056 47.826 16.92 11.67 0.00 3.06
3420 3539 3.577848 CCCCAGACATTTCCAAAATGACA 59.422 43.478 16.92 0.00 0.00 3.58
3421 3540 4.559153 CCCAGACATTTCCAAAATGACAC 58.441 43.478 16.92 9.06 0.00 3.67
3422 3541 4.281688 CCCAGACATTTCCAAAATGACACT 59.718 41.667 16.92 10.67 0.00 3.55
3423 3542 5.221501 CCCAGACATTTCCAAAATGACACTT 60.222 40.000 16.92 0.00 0.00 3.16
3424 3543 6.282930 CCAGACATTTCCAAAATGACACTTT 58.717 36.000 16.92 0.00 0.00 2.66
3425 3544 6.201425 CCAGACATTTCCAAAATGACACTTTG 59.799 38.462 16.92 2.38 34.24 2.77
3431 3550 3.716601 CCAAAATGACACTTTGGTCCAC 58.283 45.455 18.21 0.00 45.21 4.02
3432 3551 3.131933 CCAAAATGACACTTTGGTCCACA 59.868 43.478 18.21 0.00 45.21 4.17
3433 3552 4.202243 CCAAAATGACACTTTGGTCCACAT 60.202 41.667 18.21 0.00 45.21 3.21
3434 3553 4.853924 AAATGACACTTTGGTCCACATC 57.146 40.909 0.00 0.00 36.97 3.06
3435 3554 2.270352 TGACACTTTGGTCCACATCC 57.730 50.000 0.00 0.00 36.97 3.51
3436 3555 1.156736 GACACTTTGGTCCACATCCG 58.843 55.000 0.00 0.00 0.00 4.18
3437 3556 0.472471 ACACTTTGGTCCACATCCGT 59.528 50.000 0.00 0.00 0.00 4.69
3438 3557 0.874390 CACTTTGGTCCACATCCGTG 59.126 55.000 0.00 0.00 43.21 4.94
3439 3558 0.762418 ACTTTGGTCCACATCCGTGA 59.238 50.000 0.00 0.00 46.80 4.35
3440 3559 1.351017 ACTTTGGTCCACATCCGTGAT 59.649 47.619 0.00 0.00 46.80 3.06
3441 3560 2.569853 ACTTTGGTCCACATCCGTGATA 59.430 45.455 0.00 0.00 46.80 2.15
3442 3561 3.199946 ACTTTGGTCCACATCCGTGATAT 59.800 43.478 0.00 0.00 46.80 1.63
3443 3562 3.469008 TTGGTCCACATCCGTGATATC 57.531 47.619 0.00 0.00 46.80 1.63
3444 3563 2.393646 TGGTCCACATCCGTGATATCA 58.606 47.619 0.00 0.00 46.80 2.15
3445 3564 2.769095 TGGTCCACATCCGTGATATCAA 59.231 45.455 7.07 0.00 46.80 2.57
3446 3565 3.131396 GGTCCACATCCGTGATATCAAC 58.869 50.000 7.07 1.28 46.80 3.18
3447 3566 2.794910 GTCCACATCCGTGATATCAACG 59.205 50.000 7.07 12.89 46.80 4.10
3448 3567 2.691011 TCCACATCCGTGATATCAACGA 59.309 45.455 21.50 14.44 46.80 3.85
3449 3568 2.794910 CCACATCCGTGATATCAACGAC 59.205 50.000 21.50 5.42 46.80 4.34
3450 3569 2.794910 CACATCCGTGATATCAACGACC 59.205 50.000 21.50 5.11 46.80 4.79
3451 3570 2.051423 CATCCGTGATATCAACGACCG 58.949 52.381 21.50 14.54 0.00 4.79
3452 3571 1.381522 TCCGTGATATCAACGACCGA 58.618 50.000 21.50 12.07 0.00 4.69
3453 3572 1.332686 TCCGTGATATCAACGACCGAG 59.667 52.381 21.50 10.22 0.00 4.63
3454 3573 1.599667 CCGTGATATCAACGACCGAGG 60.600 57.143 21.50 7.78 0.00 4.63
3455 3574 1.065102 CGTGATATCAACGACCGAGGT 59.935 52.381 17.39 0.00 0.00 3.85
3456 3575 2.728922 GTGATATCAACGACCGAGGTC 58.271 52.381 7.07 12.07 41.40 3.85
3487 3606 2.215907 CCTAATGTGAGGTGCTCTCG 57.784 55.000 0.00 0.00 45.32 4.04
3488 3607 1.478510 CCTAATGTGAGGTGCTCTCGT 59.521 52.381 0.00 0.00 45.32 4.18
3489 3608 2.688446 CCTAATGTGAGGTGCTCTCGTA 59.312 50.000 0.00 0.00 45.32 3.43
3490 3609 2.949451 AATGTGAGGTGCTCTCGTAG 57.051 50.000 0.00 0.00 45.32 3.51
3505 3624 5.837437 CTCTCGTAGCACCAGATATTTTCT 58.163 41.667 0.00 0.00 33.90 2.52
3506 3625 5.833082 TCTCGTAGCACCAGATATTTTCTC 58.167 41.667 0.00 0.00 29.93 2.87
3507 3626 4.945246 TCGTAGCACCAGATATTTTCTCC 58.055 43.478 0.00 0.00 29.93 3.71
3508 3627 4.404394 TCGTAGCACCAGATATTTTCTCCA 59.596 41.667 0.00 0.00 29.93 3.86
3509 3628 5.105106 TCGTAGCACCAGATATTTTCTCCAA 60.105 40.000 0.00 0.00 29.93 3.53
3510 3629 5.760253 CGTAGCACCAGATATTTTCTCCAAT 59.240 40.000 0.00 0.00 29.93 3.16
3511 3630 6.293081 CGTAGCACCAGATATTTTCTCCAATG 60.293 42.308 0.00 0.00 29.93 2.82
3512 3631 5.759059 AGCACCAGATATTTTCTCCAATGA 58.241 37.500 0.00 0.00 29.93 2.57
3513 3632 5.591877 AGCACCAGATATTTTCTCCAATGAC 59.408 40.000 0.00 0.00 29.93 3.06
3514 3633 5.591877 GCACCAGATATTTTCTCCAATGACT 59.408 40.000 0.00 0.00 29.93 3.41
3515 3634 6.238593 GCACCAGATATTTTCTCCAATGACTC 60.239 42.308 0.00 0.00 29.93 3.36
3516 3635 6.825213 CACCAGATATTTTCTCCAATGACTCA 59.175 38.462 0.00 0.00 29.93 3.41
3517 3636 7.337689 CACCAGATATTTTCTCCAATGACTCAA 59.662 37.037 0.00 0.00 29.93 3.02
3518 3637 8.057623 ACCAGATATTTTCTCCAATGACTCAAT 58.942 33.333 0.00 0.00 29.93 2.57
3519 3638 8.350722 CCAGATATTTTCTCCAATGACTCAATG 58.649 37.037 0.00 0.00 29.93 2.82
3520 3639 9.117183 CAGATATTTTCTCCAATGACTCAATGA 57.883 33.333 0.00 0.00 29.93 2.57
3521 3640 9.339850 AGATATTTTCTCCAATGACTCAATGAG 57.660 33.333 8.98 8.98 35.52 2.90
3522 3641 5.633830 TTTTCTCCAATGACTCAATGAGC 57.366 39.130 10.62 4.04 32.04 4.26
3523 3642 3.986996 TCTCCAATGACTCAATGAGCA 57.013 42.857 10.62 9.76 32.04 4.26
3524 3643 3.603532 TCTCCAATGACTCAATGAGCAC 58.396 45.455 10.62 5.68 32.04 4.40
3525 3644 3.008266 TCTCCAATGACTCAATGAGCACA 59.992 43.478 10.62 11.26 32.04 4.57
3526 3645 3.945921 CTCCAATGACTCAATGAGCACAT 59.054 43.478 10.62 12.99 38.50 3.21
3527 3646 5.101648 TCCAATGACTCAATGAGCACATA 57.898 39.130 18.46 6.13 35.50 2.29
3528 3647 5.499313 TCCAATGACTCAATGAGCACATAA 58.501 37.500 18.46 8.97 35.50 1.90
3529 3648 6.124340 TCCAATGACTCAATGAGCACATAAT 58.876 36.000 18.46 6.66 35.50 1.28
3530 3649 6.261603 TCCAATGACTCAATGAGCACATAATC 59.738 38.462 18.46 6.05 35.50 1.75
3531 3650 6.262496 CCAATGACTCAATGAGCACATAATCT 59.738 38.462 18.46 5.86 35.50 2.40
3532 3651 6.862711 ATGACTCAATGAGCACATAATCTG 57.137 37.500 17.29 0.00 35.50 2.90
3533 3652 5.981174 TGACTCAATGAGCACATAATCTGA 58.019 37.500 10.62 0.00 35.50 3.27
3534 3653 6.408869 TGACTCAATGAGCACATAATCTGAA 58.591 36.000 10.62 0.00 35.50 3.02
3535 3654 6.537660 TGACTCAATGAGCACATAATCTGAAG 59.462 38.462 10.62 0.00 35.50 3.02
3536 3655 6.413052 ACTCAATGAGCACATAATCTGAAGT 58.587 36.000 10.62 0.00 35.50 3.01
3537 3656 6.883217 ACTCAATGAGCACATAATCTGAAGTT 59.117 34.615 10.62 0.00 35.50 2.66
3538 3657 7.065563 ACTCAATGAGCACATAATCTGAAGTTC 59.934 37.037 10.62 0.00 35.50 3.01
3539 3658 7.108194 TCAATGAGCACATAATCTGAAGTTCT 58.892 34.615 4.17 0.00 35.50 3.01
3540 3659 6.922247 ATGAGCACATAATCTGAAGTTCTG 57.078 37.500 4.17 3.79 34.71 3.02
3541 3660 6.041423 TGAGCACATAATCTGAAGTTCTGA 57.959 37.500 14.02 14.02 0.00 3.27
3542 3661 6.466812 TGAGCACATAATCTGAAGTTCTGAA 58.533 36.000 15.40 2.07 0.00 3.02
3543 3662 6.592994 TGAGCACATAATCTGAAGTTCTGAAG 59.407 38.462 15.40 9.09 0.00 3.02
3544 3663 5.353678 AGCACATAATCTGAAGTTCTGAAGC 59.646 40.000 15.40 12.14 0.00 3.86
3545 3664 5.122869 GCACATAATCTGAAGTTCTGAAGCA 59.877 40.000 15.40 5.44 0.00 3.91
3546 3665 6.675002 GCACATAATCTGAAGTTCTGAAGCAG 60.675 42.308 15.40 9.37 0.00 4.24
3547 3666 6.370994 CACATAATCTGAAGTTCTGAAGCAGT 59.629 38.462 15.40 9.89 32.61 4.40
3548 3667 6.593382 ACATAATCTGAAGTTCTGAAGCAGTC 59.407 38.462 15.40 0.79 32.61 3.51
3549 3668 4.888326 ATCTGAAGTTCTGAAGCAGTCT 57.112 40.909 15.40 0.00 32.61 3.24
3550 3669 5.991933 ATCTGAAGTTCTGAAGCAGTCTA 57.008 39.130 15.40 0.00 32.61 2.59
3551 3670 5.384063 TCTGAAGTTCTGAAGCAGTCTAG 57.616 43.478 9.78 0.00 32.61 2.43
3552 3671 3.919216 TGAAGTTCTGAAGCAGTCTAGC 58.081 45.455 4.17 0.00 32.61 3.42
3553 3672 3.258228 GAAGTTCTGAAGCAGTCTAGCC 58.742 50.000 0.00 0.00 34.23 3.93
3554 3673 1.552792 AGTTCTGAAGCAGTCTAGCCC 59.447 52.381 0.00 0.00 34.23 5.19
3555 3674 1.276421 GTTCTGAAGCAGTCTAGCCCA 59.724 52.381 0.00 0.00 34.23 5.36
3556 3675 1.189752 TCTGAAGCAGTCTAGCCCAG 58.810 55.000 0.00 0.00 37.17 4.45
3557 3676 0.177604 CTGAAGCAGTCTAGCCCAGG 59.822 60.000 0.00 0.00 34.25 4.45
3558 3677 0.252239 TGAAGCAGTCTAGCCCAGGA 60.252 55.000 0.00 0.00 34.23 3.86
3559 3678 0.463620 GAAGCAGTCTAGCCCAGGAG 59.536 60.000 0.00 0.00 34.23 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.799428 GCAGTCTTAACTCGGAGTTCATAC 59.201 45.833 25.51 19.72 39.51 2.39
115 119 2.763448 ACTCTTCCGAGATCTGGAAAGG 59.237 50.000 20.26 17.70 44.52 3.11
121 125 6.687081 ACTACTTAACTCTTCCGAGATCTG 57.313 41.667 0.00 0.00 39.74 2.90
129 133 4.020485 TCCTGGCAACTACTTAACTCTTCC 60.020 45.833 0.00 0.00 37.61 3.46
178 182 5.359576 TGTGTTAGTCAAGAAACTTTGGCAT 59.640 36.000 0.00 0.00 35.16 4.40
209 214 3.444388 GGGTCACCACTTAAACAACAACA 59.556 43.478 0.00 0.00 36.50 3.33
210 215 3.444388 TGGGTCACCACTTAAACAACAAC 59.556 43.478 0.00 0.00 43.37 3.32
211 216 3.698289 TGGGTCACCACTTAAACAACAA 58.302 40.909 0.00 0.00 43.37 2.83
212 217 3.367646 TGGGTCACCACTTAAACAACA 57.632 42.857 0.00 0.00 43.37 3.33
332 342 8.814931 TCATTTGACAATTGGATGGAAACTAAT 58.185 29.630 10.83 0.00 0.00 1.73
333 343 8.187913 TCATTTGACAATTGGATGGAAACTAA 57.812 30.769 10.83 0.00 0.00 2.24
374 384 9.590451 TGGTACTGTTATTTAGTCGGAAAATAG 57.410 33.333 0.00 0.00 32.10 1.73
391 401 6.711277 TCTTTTCTGCTATGATGGTACTGTT 58.289 36.000 0.00 0.00 0.00 3.16
404 415 6.040955 TCAGTTCAGAGTTCTCTTTTCTGCTA 59.959 38.462 0.00 0.00 38.52 3.49
471 485 9.571816 TGTTCATTTGTGGATTATGATGCTATA 57.428 29.630 0.00 0.00 0.00 1.31
497 519 0.755686 GATGAGAGGCCGATCCAACT 59.244 55.000 0.00 0.00 37.29 3.16
500 522 0.683412 CATGATGAGAGGCCGATCCA 59.317 55.000 0.00 0.00 37.29 3.41
519 542 3.753797 GCCTAGAGCTAATTTGGGCATAC 59.246 47.826 8.78 0.00 38.99 2.39
520 543 4.021102 GCCTAGAGCTAATTTGGGCATA 57.979 45.455 8.78 0.00 38.99 3.14
573 598 6.783892 TTTTGCATTGTAGAATTTGCCTTC 57.216 33.333 0.00 0.00 34.20 3.46
651 707 9.638239 GATTTTGCATTTCTTTACTCCATTGTA 57.362 29.630 0.00 0.00 0.00 2.41
759 815 8.527810 TCTAAAGGCAAAGAGTTTCAAAAAGAA 58.472 29.630 0.00 0.00 0.00 2.52
777 833 2.167861 CGCGCTGGACTCTAAAGGC 61.168 63.158 5.56 0.00 0.00 4.35
779 835 0.526524 CTCCGCGCTGGACTCTAAAG 60.527 60.000 15.44 2.79 43.74 1.85
781 837 3.064987 GCTCCGCGCTGGACTCTAA 62.065 63.158 15.44 0.00 43.74 2.10
782 838 3.518998 GCTCCGCGCTGGACTCTA 61.519 66.667 15.44 0.00 43.74 2.43
796 852 2.262915 CCGAGGAGTGTGGTGCTC 59.737 66.667 0.00 0.00 0.00 4.26
806 862 4.065789 GTTTAAATAGATGCCCCGAGGAG 58.934 47.826 0.00 0.00 33.47 3.69
864 927 0.107017 ATGCGGAGAACTGAATGGGG 60.107 55.000 0.00 0.00 0.00 4.96
873 936 2.478894 TCGACAAAAGAATGCGGAGAAC 59.521 45.455 0.00 0.00 0.00 3.01
880 943 3.915437 TTCCCTTCGACAAAAGAATGC 57.085 42.857 0.00 0.00 0.00 3.56
994 1057 2.620112 CCATCCGCGCCATTGATCC 61.620 63.158 0.00 0.00 0.00 3.36
1068 1144 3.775654 AGCGCCTTCTTCCCCTCG 61.776 66.667 2.29 0.00 0.00 4.63
1680 1756 3.464494 GGTAGGTAACCGGCGCCT 61.464 66.667 26.68 8.66 38.88 5.52
1689 1765 1.560505 GGTCCTGGAACGGTAGGTAA 58.439 55.000 0.00 0.00 35.54 2.85
1695 1771 1.070275 GTTTCGGTCCTGGAACGGT 59.930 57.895 31.70 0.00 43.55 4.83
1710 1786 0.390735 GGTACATGCCGACGAGGTTT 60.391 55.000 0.00 0.00 43.70 3.27
2001 2077 3.275832 TTGCTGATCGGTCGCGTCA 62.276 57.895 5.77 0.21 0.00 4.35
2034 2110 4.429212 CCGCACGACGTCATCCCA 62.429 66.667 17.16 0.00 41.42 4.37
2169 2245 3.744719 CCGCCGTCCTCGAACAGA 61.745 66.667 0.00 0.00 39.71 3.41
2988 3105 4.707105 ACACATCAGTTTGACAGTGATCA 58.293 39.130 15.86 0.00 42.87 2.92
2994 3111 6.732531 ATGTATGACACATCAGTTTGACAG 57.267 37.500 0.00 0.00 44.99 3.51
3019 3138 3.249320 AGCACGTGCATCATGTATTCATC 59.751 43.478 39.21 6.93 45.16 2.92
3035 3154 0.395448 GGGAGGGAGTACTAGCACGT 60.395 60.000 0.00 0.00 0.00 4.49
3036 3155 0.106619 AGGGAGGGAGTACTAGCACG 60.107 60.000 0.00 0.00 0.00 5.34
3037 3156 2.033372 GAAGGGAGGGAGTACTAGCAC 58.967 57.143 0.00 0.00 0.00 4.40
3038 3157 1.409802 CGAAGGGAGGGAGTACTAGCA 60.410 57.143 0.00 0.00 0.00 3.49
3039 3158 1.133853 TCGAAGGGAGGGAGTACTAGC 60.134 57.143 0.00 0.00 0.00 3.42
3040 3159 3.512219 ATCGAAGGGAGGGAGTACTAG 57.488 52.381 0.00 0.00 0.00 2.57
3041 3160 3.203710 TGAATCGAAGGGAGGGAGTACTA 59.796 47.826 0.00 0.00 0.00 1.82
3042 3161 2.024273 TGAATCGAAGGGAGGGAGTACT 60.024 50.000 0.00 0.00 0.00 2.73
3043 3162 2.385803 TGAATCGAAGGGAGGGAGTAC 58.614 52.381 0.00 0.00 0.00 2.73
3044 3163 2.840640 TGAATCGAAGGGAGGGAGTA 57.159 50.000 0.00 0.00 0.00 2.59
3045 3164 2.182516 ATGAATCGAAGGGAGGGAGT 57.817 50.000 0.00 0.00 0.00 3.85
3046 3165 4.899352 AATATGAATCGAAGGGAGGGAG 57.101 45.455 0.00 0.00 0.00 4.30
3047 3166 6.952605 AATAATATGAATCGAAGGGAGGGA 57.047 37.500 0.00 0.00 0.00 4.20
3048 3167 7.553044 GGTAAATAATATGAATCGAAGGGAGGG 59.447 40.741 0.00 0.00 0.00 4.30
3049 3168 7.277981 CGGTAAATAATATGAATCGAAGGGAGG 59.722 40.741 0.00 0.00 0.00 4.30
3050 3169 7.817962 ACGGTAAATAATATGAATCGAAGGGAG 59.182 37.037 0.00 0.00 0.00 4.30
3051 3170 7.673180 ACGGTAAATAATATGAATCGAAGGGA 58.327 34.615 0.00 0.00 0.00 4.20
3052 3171 7.900782 ACGGTAAATAATATGAATCGAAGGG 57.099 36.000 0.00 0.00 0.00 3.95
3053 3172 8.984764 TGAACGGTAAATAATATGAATCGAAGG 58.015 33.333 0.00 0.00 0.00 3.46
3057 3176 9.923786 TGTTTGAACGGTAAATAATATGAATCG 57.076 29.630 0.00 0.00 0.00 3.34
3066 3185 9.661563 AGATACATCTGTTTGAACGGTAAATAA 57.338 29.630 2.88 0.00 35.42 1.40
3068 3187 9.314321 CTAGATACATCTGTTTGAACGGTAAAT 57.686 33.333 1.88 0.00 37.76 1.40
3069 3188 8.525316 TCTAGATACATCTGTTTGAACGGTAAA 58.475 33.333 1.88 0.00 37.76 2.01
3070 3189 8.058667 TCTAGATACATCTGTTTGAACGGTAA 57.941 34.615 1.88 0.00 37.76 2.85
3071 3190 7.634671 TCTAGATACATCTGTTTGAACGGTA 57.365 36.000 1.88 0.00 37.76 4.02
3072 3191 6.525578 TCTAGATACATCTGTTTGAACGGT 57.474 37.500 1.88 0.00 37.76 4.83
3073 3192 6.980978 ACATCTAGATACATCTGTTTGAACGG 59.019 38.462 4.54 0.00 37.76 4.44
3074 3193 7.993821 ACATCTAGATACATCTGTTTGAACG 57.006 36.000 4.54 0.00 37.76 3.95
3138 3257 9.872684 ACAATTGATGTATTCCTTTCTATCCAT 57.127 29.630 13.59 0.00 41.63 3.41
3139 3258 9.699410 AACAATTGATGTATTCCTTTCTATCCA 57.301 29.630 13.59 0.00 42.99 3.41
3140 3259 9.956720 CAACAATTGATGTATTCCTTTCTATCC 57.043 33.333 13.59 0.00 42.99 2.59
3162 3281 9.419297 GCCAATTCTCGTATAAGTATATCAACA 57.581 33.333 0.00 0.00 0.00 3.33
3163 3282 8.584600 CGCCAATTCTCGTATAAGTATATCAAC 58.415 37.037 0.00 0.00 0.00 3.18
3164 3283 7.758076 CCGCCAATTCTCGTATAAGTATATCAA 59.242 37.037 0.00 0.00 0.00 2.57
3165 3284 7.255569 CCGCCAATTCTCGTATAAGTATATCA 58.744 38.462 0.00 0.00 0.00 2.15
3166 3285 6.696148 CCCGCCAATTCTCGTATAAGTATATC 59.304 42.308 0.00 0.00 0.00 1.63
3167 3286 6.570692 CCCGCCAATTCTCGTATAAGTATAT 58.429 40.000 0.00 0.00 0.00 0.86
3168 3287 5.622914 GCCCGCCAATTCTCGTATAAGTATA 60.623 44.000 0.00 0.00 0.00 1.47
3169 3288 4.817517 CCCGCCAATTCTCGTATAAGTAT 58.182 43.478 0.00 0.00 0.00 2.12
3170 3289 3.553508 GCCCGCCAATTCTCGTATAAGTA 60.554 47.826 0.00 0.00 0.00 2.24
3171 3290 2.805657 GCCCGCCAATTCTCGTATAAGT 60.806 50.000 0.00 0.00 0.00 2.24
3172 3291 1.798813 GCCCGCCAATTCTCGTATAAG 59.201 52.381 0.00 0.00 0.00 1.73
3173 3292 1.541670 GGCCCGCCAATTCTCGTATAA 60.542 52.381 0.00 0.00 35.81 0.98
3174 3293 0.034337 GGCCCGCCAATTCTCGTATA 59.966 55.000 0.00 0.00 35.81 1.47
3175 3294 1.227853 GGCCCGCCAATTCTCGTAT 60.228 57.895 0.00 0.00 35.81 3.06
3176 3295 2.188469 GGCCCGCCAATTCTCGTA 59.812 61.111 0.00 0.00 35.81 3.43
3177 3296 4.028490 TGGCCCGCCAATTCTCGT 62.028 61.111 5.79 0.00 44.12 4.18
3185 3304 2.413963 CGAATTCATTGGCCCGCCA 61.414 57.895 3.74 3.74 45.63 5.69
3186 3305 2.412937 CGAATTCATTGGCCCGCC 59.587 61.111 0.00 0.00 0.00 6.13
3187 3306 2.412937 CCGAATTCATTGGCCCGC 59.587 61.111 0.00 0.00 0.00 6.13
3188 3307 1.752694 ACCCGAATTCATTGGCCCG 60.753 57.895 0.00 0.00 0.00 6.13
3189 3308 1.815866 CACCCGAATTCATTGGCCC 59.184 57.895 0.00 0.00 0.00 5.80
3190 3309 1.141665 GCACCCGAATTCATTGGCC 59.858 57.895 6.22 0.00 0.00 5.36
3191 3310 1.141665 GGCACCCGAATTCATTGGC 59.858 57.895 6.22 7.42 0.00 4.52
3192 3311 0.173255 GTGGCACCCGAATTCATTGG 59.827 55.000 6.29 5.26 0.00 3.16
3193 3312 0.179166 CGTGGCACCCGAATTCATTG 60.179 55.000 12.86 0.09 0.00 2.82
3194 3313 1.312371 CCGTGGCACCCGAATTCATT 61.312 55.000 12.86 0.00 0.00 2.57
3195 3314 1.748879 CCGTGGCACCCGAATTCAT 60.749 57.895 12.86 0.00 0.00 2.57
3196 3315 2.359354 CCGTGGCACCCGAATTCA 60.359 61.111 12.86 0.00 0.00 2.57
3197 3316 3.131478 CCCGTGGCACCCGAATTC 61.131 66.667 12.86 0.00 0.00 2.17
3198 3317 3.622060 CTCCCGTGGCACCCGAATT 62.622 63.158 12.86 0.00 0.00 2.17
3199 3318 4.096003 CTCCCGTGGCACCCGAAT 62.096 66.667 12.86 0.00 0.00 3.34
3208 3327 2.469465 AATGTGAGGTGCTCCCGTGG 62.469 60.000 0.00 0.00 38.74 4.94
3209 3328 0.249120 TAATGTGAGGTGCTCCCGTG 59.751 55.000 0.00 0.00 38.74 4.94
3210 3329 0.537188 CTAATGTGAGGTGCTCCCGT 59.463 55.000 0.00 0.00 38.74 5.28
3211 3330 0.179073 CCTAATGTGAGGTGCTCCCG 60.179 60.000 0.00 0.00 38.74 5.14
3212 3331 3.788672 CCTAATGTGAGGTGCTCCC 57.211 57.895 0.00 0.00 0.00 4.30
3223 3342 2.290960 GGAAACTGGGAGCACCTAATGT 60.291 50.000 0.00 0.00 41.11 2.71
3224 3343 2.290896 TGGAAACTGGGAGCACCTAATG 60.291 50.000 0.00 0.00 41.11 1.90
3225 3344 1.992557 TGGAAACTGGGAGCACCTAAT 59.007 47.619 0.00 0.00 41.11 1.73
3226 3345 1.440618 TGGAAACTGGGAGCACCTAA 58.559 50.000 0.00 0.00 41.11 2.69
3227 3346 1.440618 TTGGAAACTGGGAGCACCTA 58.559 50.000 0.00 0.00 41.11 3.08
3228 3347 0.555769 TTTGGAAACTGGGAGCACCT 59.444 50.000 0.00 0.00 41.11 4.00
3229 3348 1.408969 TTTTGGAAACTGGGAGCACC 58.591 50.000 0.00 0.00 40.81 5.01
3230 3349 2.867647 GCATTTTGGAAACTGGGAGCAC 60.868 50.000 0.00 0.00 0.00 4.40
3231 3350 1.344114 GCATTTTGGAAACTGGGAGCA 59.656 47.619 0.00 0.00 0.00 4.26
3232 3351 1.344114 TGCATTTTGGAAACTGGGAGC 59.656 47.619 0.00 0.00 0.00 4.70
3233 3352 2.364970 TGTGCATTTTGGAAACTGGGAG 59.635 45.455 0.00 0.00 0.00 4.30
3234 3353 2.392662 TGTGCATTTTGGAAACTGGGA 58.607 42.857 0.00 0.00 0.00 4.37
3235 3354 2.906691 TGTGCATTTTGGAAACTGGG 57.093 45.000 0.00 0.00 0.00 4.45
3236 3355 6.857777 TTAAATGTGCATTTTGGAAACTGG 57.142 33.333 14.29 0.00 40.99 4.00
3237 3356 8.716619 CATTTAAATGTGCATTTTGGAAACTG 57.283 30.769 18.32 5.16 40.99 3.16
3291 3410 7.417612 GGATTGTACATTCATGTCATGGTAAC 58.582 38.462 17.15 5.61 41.97 2.50
3292 3411 6.545666 GGGATTGTACATTCATGTCATGGTAA 59.454 38.462 17.15 1.36 41.97 2.85
3293 3412 6.061441 GGGATTGTACATTCATGTCATGGTA 58.939 40.000 17.15 4.87 41.97 3.25
3294 3413 4.889409 GGGATTGTACATTCATGTCATGGT 59.111 41.667 17.15 5.80 41.97 3.55
3295 3414 5.135383 AGGGATTGTACATTCATGTCATGG 58.865 41.667 17.15 0.00 41.97 3.66
3296 3415 7.806409 TTAGGGATTGTACATTCATGTCATG 57.194 36.000 17.15 6.47 41.97 3.07
3297 3416 8.821686 TTTTAGGGATTGTACATTCATGTCAT 57.178 30.769 17.15 3.11 41.97 3.06
3298 3417 8.642935 TTTTTAGGGATTGTACATTCATGTCA 57.357 30.769 17.15 0.00 41.97 3.58
3326 3445 9.452065 CAATGTGCATTTGAAATTTTGATTTGA 57.548 25.926 6.52 0.00 0.00 2.69
3327 3446 9.452065 TCAATGTGCATTTGAAATTTTGATTTG 57.548 25.926 11.37 0.00 0.00 2.32
3328 3447 9.672086 CTCAATGTGCATTTGAAATTTTGATTT 57.328 25.926 13.86 0.00 0.00 2.17
3329 3448 9.058174 TCTCAATGTGCATTTGAAATTTTGATT 57.942 25.926 13.86 0.00 0.00 2.57
3330 3449 8.610248 TCTCAATGTGCATTTGAAATTTTGAT 57.390 26.923 13.86 0.00 0.00 2.57
3331 3450 8.434733 TTCTCAATGTGCATTTGAAATTTTGA 57.565 26.923 13.86 6.22 0.00 2.69
3332 3451 8.949953 GTTTCTCAATGTGCATTTGAAATTTTG 58.050 29.630 17.49 4.46 35.34 2.44
3333 3452 8.675504 TGTTTCTCAATGTGCATTTGAAATTTT 58.324 25.926 17.49 0.00 35.34 1.82
3334 3453 8.211116 TGTTTCTCAATGTGCATTTGAAATTT 57.789 26.923 17.49 0.00 35.34 1.82
3335 3454 7.789273 TGTTTCTCAATGTGCATTTGAAATT 57.211 28.000 17.49 0.00 35.34 1.82
3336 3455 7.711772 TCTTGTTTCTCAATGTGCATTTGAAAT 59.288 29.630 17.49 0.00 35.34 2.17
3337 3456 7.040494 TCTTGTTTCTCAATGTGCATTTGAAA 58.960 30.769 13.86 13.69 35.35 2.69
3338 3457 6.571605 TCTTGTTTCTCAATGTGCATTTGAA 58.428 32.000 13.86 1.41 35.35 2.69
3339 3458 6.146601 TCTTGTTTCTCAATGTGCATTTGA 57.853 33.333 12.71 12.71 35.35 2.69
3340 3459 6.831727 TTCTTGTTTCTCAATGTGCATTTG 57.168 33.333 6.11 6.11 35.35 2.32
3341 3460 7.223387 GTCTTTCTTGTTTCTCAATGTGCATTT 59.777 33.333 0.00 0.00 35.35 2.32
3342 3461 6.698766 GTCTTTCTTGTTTCTCAATGTGCATT 59.301 34.615 0.00 0.00 35.35 3.56
3343 3462 6.183360 TGTCTTTCTTGTTTCTCAATGTGCAT 60.183 34.615 0.00 0.00 35.35 3.96
3344 3463 5.125257 TGTCTTTCTTGTTTCTCAATGTGCA 59.875 36.000 0.00 0.00 35.35 4.57
3345 3464 5.581605 TGTCTTTCTTGTTTCTCAATGTGC 58.418 37.500 0.00 0.00 35.35 4.57
3346 3465 8.638685 ATTTGTCTTTCTTGTTTCTCAATGTG 57.361 30.769 0.00 0.00 35.35 3.21
3347 3466 7.922811 GGATTTGTCTTTCTTGTTTCTCAATGT 59.077 33.333 0.00 0.00 35.35 2.71
3348 3467 7.922278 TGGATTTGTCTTTCTTGTTTCTCAATG 59.078 33.333 0.00 0.00 35.35 2.82
3349 3468 8.010733 TGGATTTGTCTTTCTTGTTTCTCAAT 57.989 30.769 0.00 0.00 35.35 2.57
3350 3469 7.403312 TGGATTTGTCTTTCTTGTTTCTCAA 57.597 32.000 0.00 0.00 34.61 3.02
3351 3470 6.460123 GCTGGATTTGTCTTTCTTGTTTCTCA 60.460 38.462 0.00 0.00 0.00 3.27
3352 3471 5.917447 GCTGGATTTGTCTTTCTTGTTTCTC 59.083 40.000 0.00 0.00 0.00 2.87
3353 3472 5.360714 TGCTGGATTTGTCTTTCTTGTTTCT 59.639 36.000 0.00 0.00 0.00 2.52
3354 3473 5.591099 TGCTGGATTTGTCTTTCTTGTTTC 58.409 37.500 0.00 0.00 0.00 2.78
3355 3474 5.596836 TGCTGGATTTGTCTTTCTTGTTT 57.403 34.783 0.00 0.00 0.00 2.83
3356 3475 5.302568 TCATGCTGGATTTGTCTTTCTTGTT 59.697 36.000 0.00 0.00 0.00 2.83
3357 3476 4.828939 TCATGCTGGATTTGTCTTTCTTGT 59.171 37.500 0.00 0.00 0.00 3.16
3358 3477 5.381174 TCATGCTGGATTTGTCTTTCTTG 57.619 39.130 0.00 0.00 0.00 3.02
3359 3478 6.014840 ACATTCATGCTGGATTTGTCTTTCTT 60.015 34.615 0.00 0.00 0.00 2.52
3360 3479 5.479375 ACATTCATGCTGGATTTGTCTTTCT 59.521 36.000 0.00 0.00 0.00 2.52
3361 3480 5.717119 ACATTCATGCTGGATTTGTCTTTC 58.283 37.500 0.00 0.00 0.00 2.62
3362 3481 5.733620 ACATTCATGCTGGATTTGTCTTT 57.266 34.783 0.00 0.00 0.00 2.52
3363 3482 5.733620 AACATTCATGCTGGATTTGTCTT 57.266 34.783 0.00 0.00 0.00 3.01
3364 3483 5.733620 AAACATTCATGCTGGATTTGTCT 57.266 34.783 0.00 0.00 0.00 3.41
3365 3484 5.390145 GCAAAACATTCATGCTGGATTTGTC 60.390 40.000 18.49 12.59 37.12 3.18
3366 3485 4.453136 GCAAAACATTCATGCTGGATTTGT 59.547 37.500 18.49 3.58 37.12 2.83
3367 3486 4.452795 TGCAAAACATTCATGCTGGATTTG 59.547 37.500 15.91 15.91 40.66 2.32
3368 3487 4.643463 TGCAAAACATTCATGCTGGATTT 58.357 34.783 0.00 0.00 40.66 2.17
3369 3488 4.020928 TCTGCAAAACATTCATGCTGGATT 60.021 37.500 0.00 0.00 40.66 3.01
3370 3489 3.512329 TCTGCAAAACATTCATGCTGGAT 59.488 39.130 0.00 0.00 40.66 3.41
3371 3490 2.892215 TCTGCAAAACATTCATGCTGGA 59.108 40.909 0.00 0.00 40.66 3.86
3372 3491 3.306917 TCTGCAAAACATTCATGCTGG 57.693 42.857 0.00 0.00 40.66 4.85
3373 3492 5.660629 TTTTCTGCAAAACATTCATGCTG 57.339 34.783 0.00 0.00 40.66 4.41
3374 3493 5.410439 GGATTTTCTGCAAAACATTCATGCT 59.590 36.000 0.00 0.00 40.66 3.79
3375 3494 5.391203 GGGATTTTCTGCAAAACATTCATGC 60.391 40.000 0.00 0.00 40.45 4.06
3376 3495 5.122711 GGGGATTTTCTGCAAAACATTCATG 59.877 40.000 0.00 0.00 34.24 3.07
3377 3496 5.247862 GGGGATTTTCTGCAAAACATTCAT 58.752 37.500 0.00 0.00 34.24 2.57
3378 3497 4.504689 GGGGGATTTTCTGCAAAACATTCA 60.505 41.667 0.00 0.00 34.24 2.57
3379 3498 4.002982 GGGGGATTTTCTGCAAAACATTC 58.997 43.478 0.00 0.00 34.24 2.67
3380 3499 3.393941 TGGGGGATTTTCTGCAAAACATT 59.606 39.130 0.00 0.00 34.24 2.71
3381 3500 2.978278 TGGGGGATTTTCTGCAAAACAT 59.022 40.909 0.00 0.00 34.24 2.71
3382 3501 2.368221 CTGGGGGATTTTCTGCAAAACA 59.632 45.455 0.00 0.00 34.24 2.83
3383 3502 2.632512 TCTGGGGGATTTTCTGCAAAAC 59.367 45.455 0.00 0.00 34.24 2.43
3384 3503 2.632512 GTCTGGGGGATTTTCTGCAAAA 59.367 45.455 0.00 0.00 35.92 2.44
3385 3504 2.247358 GTCTGGGGGATTTTCTGCAAA 58.753 47.619 0.00 0.00 0.00 3.68
3386 3505 1.146774 TGTCTGGGGGATTTTCTGCAA 59.853 47.619 0.00 0.00 0.00 4.08
3387 3506 0.776810 TGTCTGGGGGATTTTCTGCA 59.223 50.000 0.00 0.00 0.00 4.41
3388 3507 2.149973 ATGTCTGGGGGATTTTCTGC 57.850 50.000 0.00 0.00 0.00 4.26
3389 3508 3.448660 GGAAATGTCTGGGGGATTTTCTG 59.551 47.826 0.00 0.00 33.40 3.02
3390 3509 3.077391 TGGAAATGTCTGGGGGATTTTCT 59.923 43.478 0.00 0.00 33.40 2.52
3391 3510 3.440127 TGGAAATGTCTGGGGGATTTTC 58.560 45.455 0.00 0.00 32.74 2.29
3392 3511 3.558608 TGGAAATGTCTGGGGGATTTT 57.441 42.857 0.00 0.00 0.00 1.82
3393 3512 3.558608 TTGGAAATGTCTGGGGGATTT 57.441 42.857 0.00 0.00 0.00 2.17
3394 3513 3.558608 TTTGGAAATGTCTGGGGGATT 57.441 42.857 0.00 0.00 0.00 3.01
3395 3514 3.558608 TTTTGGAAATGTCTGGGGGAT 57.441 42.857 0.00 0.00 0.00 3.85
3396 3515 3.172339 CATTTTGGAAATGTCTGGGGGA 58.828 45.455 5.46 0.00 0.00 4.81
3397 3516 3.055891 GTCATTTTGGAAATGTCTGGGGG 60.056 47.826 11.78 0.00 0.00 5.40
3398 3517 3.577848 TGTCATTTTGGAAATGTCTGGGG 59.422 43.478 11.78 0.00 0.00 4.96
3399 3518 4.281688 AGTGTCATTTTGGAAATGTCTGGG 59.718 41.667 11.78 0.00 0.00 4.45
3400 3519 5.458041 AGTGTCATTTTGGAAATGTCTGG 57.542 39.130 11.78 0.00 0.00 3.86
3401 3520 7.169035 CAAAGTGTCATTTTGGAAATGTCTG 57.831 36.000 11.87 0.55 33.08 3.51
3411 3530 4.383850 TGTGGACCAAAGTGTCATTTTG 57.616 40.909 12.58 12.58 36.97 2.44
3412 3531 4.039124 GGATGTGGACCAAAGTGTCATTTT 59.961 41.667 0.00 0.00 36.97 1.82
3413 3532 3.573967 GGATGTGGACCAAAGTGTCATTT 59.426 43.478 0.00 0.00 36.97 2.32
3414 3533 3.157087 GGATGTGGACCAAAGTGTCATT 58.843 45.455 0.00 0.00 36.97 2.57
3415 3534 2.795329 GGATGTGGACCAAAGTGTCAT 58.205 47.619 0.00 0.00 36.97 3.06
3416 3535 1.542328 CGGATGTGGACCAAAGTGTCA 60.542 52.381 0.00 0.00 36.97 3.58
3417 3536 1.156736 CGGATGTGGACCAAAGTGTC 58.843 55.000 0.00 0.00 34.42 3.67
3418 3537 0.472471 ACGGATGTGGACCAAAGTGT 59.528 50.000 0.00 0.00 0.00 3.55
3419 3538 0.874390 CACGGATGTGGACCAAAGTG 59.126 55.000 0.00 0.00 42.59 3.16
3420 3539 0.762418 TCACGGATGTGGACCAAAGT 59.238 50.000 0.00 0.00 46.42 2.66
3421 3540 2.113860 ATCACGGATGTGGACCAAAG 57.886 50.000 0.00 0.00 46.42 2.77
3422 3541 3.198853 TGATATCACGGATGTGGACCAAA 59.801 43.478 0.00 0.00 46.42 3.28
3423 3542 2.769095 TGATATCACGGATGTGGACCAA 59.231 45.455 0.00 0.00 46.42 3.67
3424 3543 2.393646 TGATATCACGGATGTGGACCA 58.606 47.619 0.00 0.00 46.42 4.02
3425 3544 3.131396 GTTGATATCACGGATGTGGACC 58.869 50.000 4.48 0.00 46.42 4.46
3426 3545 2.794910 CGTTGATATCACGGATGTGGAC 59.205 50.000 4.48 0.00 46.42 4.02
3427 3546 2.691011 TCGTTGATATCACGGATGTGGA 59.309 45.455 20.15 4.41 46.42 4.02
3428 3547 2.794910 GTCGTTGATATCACGGATGTGG 59.205 50.000 20.15 1.87 46.42 4.17
3430 3549 2.543031 CGGTCGTTGATATCACGGATGT 60.543 50.000 20.15 0.00 0.00 3.06
3431 3550 2.051423 CGGTCGTTGATATCACGGATG 58.949 52.381 20.15 7.89 0.00 3.51
3432 3551 1.951602 TCGGTCGTTGATATCACGGAT 59.048 47.619 20.15 0.00 0.00 4.18
3433 3552 1.332686 CTCGGTCGTTGATATCACGGA 59.667 52.381 20.15 12.23 0.00 4.69
3434 3553 1.599667 CCTCGGTCGTTGATATCACGG 60.600 57.143 20.15 10.49 0.00 4.94
3435 3554 1.065102 ACCTCGGTCGTTGATATCACG 59.935 52.381 4.48 12.36 0.00 4.35
3436 3555 2.728922 GACCTCGGTCGTTGATATCAC 58.271 52.381 4.48 0.21 35.30 3.06
3457 3576 2.100631 ACATTAGGTGCTCACGCGC 61.101 57.895 5.73 0.00 45.74 6.86
3458 3577 1.709760 CACATTAGGTGCTCACGCG 59.290 57.895 3.53 3.53 41.36 6.01
3468 3587 1.478510 ACGAGAGCACCTCACATTAGG 59.521 52.381 6.89 0.00 42.06 2.69
3469 3588 2.949451 ACGAGAGCACCTCACATTAG 57.051 50.000 6.89 0.00 42.06 1.73
3471 3590 2.949451 CTACGAGAGCACCTCACATT 57.051 50.000 6.89 0.00 42.06 2.71
3481 3600 5.737635 AGAAAATATCTGGTGCTACGAGAGC 60.738 44.000 7.07 7.07 44.09 4.09
3482 3601 5.837437 AGAAAATATCTGGTGCTACGAGAG 58.163 41.667 0.00 0.00 36.42 3.20
3483 3602 5.221263 GGAGAAAATATCTGGTGCTACGAGA 60.221 44.000 0.00 4.14 38.96 4.04
3484 3603 4.985409 GGAGAAAATATCTGGTGCTACGAG 59.015 45.833 0.00 0.00 38.96 4.18
3485 3604 4.404394 TGGAGAAAATATCTGGTGCTACGA 59.596 41.667 0.00 0.00 38.96 3.43
3486 3605 4.693283 TGGAGAAAATATCTGGTGCTACG 58.307 43.478 0.00 0.00 38.96 3.51
3487 3606 6.767902 TCATTGGAGAAAATATCTGGTGCTAC 59.232 38.462 0.00 0.00 38.96 3.58
3488 3607 6.767902 GTCATTGGAGAAAATATCTGGTGCTA 59.232 38.462 0.00 0.00 38.96 3.49
3489 3608 5.591877 GTCATTGGAGAAAATATCTGGTGCT 59.408 40.000 0.00 0.00 38.96 4.40
3490 3609 5.591877 AGTCATTGGAGAAAATATCTGGTGC 59.408 40.000 0.00 0.00 38.96 5.01
3491 3610 6.825213 TGAGTCATTGGAGAAAATATCTGGTG 59.175 38.462 0.00 0.00 38.96 4.17
3492 3611 6.962182 TGAGTCATTGGAGAAAATATCTGGT 58.038 36.000 0.00 0.00 38.96 4.00
3493 3612 7.870509 TTGAGTCATTGGAGAAAATATCTGG 57.129 36.000 0.00 0.00 38.96 3.86
3494 3613 9.117183 TCATTGAGTCATTGGAGAAAATATCTG 57.883 33.333 13.60 0.00 38.96 2.90
3495 3614 9.339850 CTCATTGAGTCATTGGAGAAAATATCT 57.660 33.333 13.60 0.00 42.61 1.98
3496 3615 8.074972 GCTCATTGAGTCATTGGAGAAAATATC 58.925 37.037 14.90 0.00 31.39 1.63
3497 3616 7.558807 TGCTCATTGAGTCATTGGAGAAAATAT 59.441 33.333 14.90 0.00 31.39 1.28
3498 3617 6.885918 TGCTCATTGAGTCATTGGAGAAAATA 59.114 34.615 14.90 0.00 31.39 1.40
3499 3618 5.713389 TGCTCATTGAGTCATTGGAGAAAAT 59.287 36.000 14.90 0.00 31.39 1.82
3500 3619 5.048504 GTGCTCATTGAGTCATTGGAGAAAA 60.049 40.000 14.90 3.12 31.39 2.29
3501 3620 4.456911 GTGCTCATTGAGTCATTGGAGAAA 59.543 41.667 14.90 4.93 31.39 2.52
3502 3621 4.005650 GTGCTCATTGAGTCATTGGAGAA 58.994 43.478 14.90 6.60 31.39 2.87
3503 3622 3.008266 TGTGCTCATTGAGTCATTGGAGA 59.992 43.478 14.90 1.88 31.39 3.71
3504 3623 3.340928 TGTGCTCATTGAGTCATTGGAG 58.659 45.455 14.90 11.85 31.39 3.86
3505 3624 3.421919 TGTGCTCATTGAGTCATTGGA 57.578 42.857 14.90 2.70 31.39 3.53
3506 3625 5.823209 TTATGTGCTCATTGAGTCATTGG 57.177 39.130 21.75 7.02 35.70 3.16
3507 3626 7.012044 TCAGATTATGTGCTCATTGAGTCATTG 59.988 37.037 21.75 16.59 35.70 2.82
3508 3627 7.052248 TCAGATTATGTGCTCATTGAGTCATT 58.948 34.615 21.75 11.71 35.70 2.57
3509 3628 6.589135 TCAGATTATGTGCTCATTGAGTCAT 58.411 36.000 20.95 20.95 35.70 3.06
3510 3629 5.981174 TCAGATTATGTGCTCATTGAGTCA 58.019 37.500 14.90 13.87 35.70 3.41
3511 3630 6.538021 ACTTCAGATTATGTGCTCATTGAGTC 59.462 38.462 14.90 8.08 35.70 3.36
3512 3631 6.413052 ACTTCAGATTATGTGCTCATTGAGT 58.587 36.000 14.90 3.02 35.70 3.41
3513 3632 6.922247 ACTTCAGATTATGTGCTCATTGAG 57.078 37.500 9.40 9.40 35.70 3.02
3514 3633 7.065443 CAGAACTTCAGATTATGTGCTCATTGA 59.935 37.037 6.57 1.85 35.70 2.57
3515 3634 7.065443 TCAGAACTTCAGATTATGTGCTCATTG 59.935 37.037 6.57 0.00 35.70 2.82
3516 3635 7.108194 TCAGAACTTCAGATTATGTGCTCATT 58.892 34.615 6.57 0.00 35.70 2.57
3517 3636 6.647229 TCAGAACTTCAGATTATGTGCTCAT 58.353 36.000 6.50 6.50 38.00 2.90
3518 3637 6.041423 TCAGAACTTCAGATTATGTGCTCA 57.959 37.500 0.00 0.00 0.00 4.26
3519 3638 6.456718 GCTTCAGAACTTCAGATTATGTGCTC 60.457 42.308 0.00 0.00 0.00 4.26
3520 3639 5.353678 GCTTCAGAACTTCAGATTATGTGCT 59.646 40.000 0.00 0.00 0.00 4.40
3521 3640 5.122869 TGCTTCAGAACTTCAGATTATGTGC 59.877 40.000 0.00 0.00 0.00 4.57
3522 3641 6.370994 ACTGCTTCAGAACTTCAGATTATGTG 59.629 38.462 0.29 0.00 35.18 3.21
3523 3642 6.471146 ACTGCTTCAGAACTTCAGATTATGT 58.529 36.000 0.29 0.00 35.18 2.29
3524 3643 6.817641 AGACTGCTTCAGAACTTCAGATTATG 59.182 38.462 0.29 0.00 35.18 1.90
3525 3644 6.945218 AGACTGCTTCAGAACTTCAGATTAT 58.055 36.000 0.29 0.00 35.18 1.28
3526 3645 6.352016 AGACTGCTTCAGAACTTCAGATTA 57.648 37.500 0.29 0.00 35.18 1.75
3527 3646 5.226194 AGACTGCTTCAGAACTTCAGATT 57.774 39.130 0.29 0.00 35.18 2.40
3528 3647 4.888326 AGACTGCTTCAGAACTTCAGAT 57.112 40.909 0.29 0.00 35.18 2.90
3529 3648 4.321601 GCTAGACTGCTTCAGAACTTCAGA 60.322 45.833 0.00 0.00 35.18 3.27
3530 3649 3.925913 GCTAGACTGCTTCAGAACTTCAG 59.074 47.826 0.00 0.00 35.18 3.02
3531 3650 3.306364 GGCTAGACTGCTTCAGAACTTCA 60.306 47.826 0.00 0.00 35.18 3.02
3532 3651 3.258228 GGCTAGACTGCTTCAGAACTTC 58.742 50.000 0.00 0.00 35.18 3.01
3533 3652 2.027653 GGGCTAGACTGCTTCAGAACTT 60.028 50.000 0.00 0.00 35.18 2.66
3534 3653 1.552792 GGGCTAGACTGCTTCAGAACT 59.447 52.381 0.00 2.96 35.18 3.01
3535 3654 1.276421 TGGGCTAGACTGCTTCAGAAC 59.724 52.381 0.00 0.00 35.18 3.01
3536 3655 1.552337 CTGGGCTAGACTGCTTCAGAA 59.448 52.381 0.00 0.00 36.83 3.02
3537 3656 1.189752 CTGGGCTAGACTGCTTCAGA 58.810 55.000 0.00 0.00 36.83 3.27
3538 3657 0.177604 CCTGGGCTAGACTGCTTCAG 59.822 60.000 0.00 0.00 37.52 3.02
3539 3658 0.252239 TCCTGGGCTAGACTGCTTCA 60.252 55.000 0.00 0.00 0.00 3.02
3540 3659 0.463620 CTCCTGGGCTAGACTGCTTC 59.536 60.000 0.00 0.00 0.00 3.86
3541 3660 2.601664 CTCCTGGGCTAGACTGCTT 58.398 57.895 0.00 0.00 0.00 3.91
3542 3661 4.371699 CTCCTGGGCTAGACTGCT 57.628 61.111 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.