Multiple sequence alignment - TraesCS3B01G152600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G152600 chr3B 100.000 3516 0 0 1 3516 144811085 144814600 0.000000e+00 6493
1 TraesCS3B01G152600 chr3B 83.721 301 21 12 1474 1773 144812507 144812780 3.480000e-65 259
2 TraesCS3B01G152600 chr3B 83.721 301 21 12 1423 1696 144812558 144812857 3.480000e-65 259
3 TraesCS3B01G152600 chr3A 92.389 1708 84 19 1489 3191 547476420 547478086 0.000000e+00 2392
4 TraesCS3B01G152600 chr3A 87.375 998 76 14 603 1566 547475041 547476022 0.000000e+00 1099
5 TraesCS3B01G152600 chr3A 91.765 85 7 0 1684 1768 547476525 547476609 6.170000e-23 119
6 TraesCS3B01G152600 chr3A 87.912 91 6 5 486 576 151320899 151320814 6.210000e-18 102
7 TraesCS3B01G152600 chr3D 92.449 1629 85 17 1585 3191 94493476 94495088 0.000000e+00 2292
8 TraesCS3B01G152600 chr3D 90.900 1011 39 15 594 1576 94492146 94493131 0.000000e+00 1308
9 TraesCS3B01G152600 chr3D 89.055 201 19 3 1474 1674 94492978 94493175 2.710000e-61 246
10 TraesCS3B01G152600 chr3D 93.269 104 7 0 1525 1628 94492978 94493081 1.690000e-33 154
11 TraesCS3B01G152600 chr3D 92.233 103 8 0 1588 1690 94493572 94493674 2.830000e-31 147
12 TraesCS3B01G152600 chr3D 88.889 90 6 2 341 430 94491939 94492024 1.330000e-19 108
13 TraesCS3B01G152600 chr2D 94.118 272 13 2 3243 3511 491802599 491802870 9.080000e-111 411
14 TraesCS3B01G152600 chr2A 93.750 272 14 2 3243 3511 636904417 636904688 4.230000e-109 405
15 TraesCS3B01G152600 chr7A 93.358 271 16 1 3248 3516 595822979 595822709 1.970000e-107 399
16 TraesCS3B01G152600 chr7A 89.073 302 30 2 3212 3510 712627176 712627477 4.290000e-99 372
17 TraesCS3B01G152600 chr1A 93.893 262 13 3 3250 3510 533465015 533464756 3.290000e-105 392
18 TraesCS3B01G152600 chr5D 92.857 266 17 1 3248 3511 135656969 135656704 5.510000e-103 385
19 TraesCS3B01G152600 chr5A 92.884 267 16 3 3245 3510 688730590 688730854 5.510000e-103 385
20 TraesCS3B01G152600 chr2B 92.537 268 16 4 3247 3511 576085151 576085417 7.120000e-102 381
21 TraesCS3B01G152600 chr7B 90.345 290 25 2 3225 3512 726018189 726018477 9.210000e-101 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G152600 chr3B 144811085 144814600 3515 False 2337.000000 6493 89.147333 1 3516 3 chr3B.!!$F1 3515
1 TraesCS3B01G152600 chr3A 547475041 547478086 3045 False 1203.333333 2392 90.509667 603 3191 3 chr3A.!!$F1 2588
2 TraesCS3B01G152600 chr3D 94491939 94495088 3149 False 709.166667 2292 91.132500 341 3191 6 chr3D.!!$F1 2850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.100861 GCACGCCACTACTCCTACTC 59.899 60.0 0.00 0.00 0.00 2.59 F
424 425 0.109153 AGACAGTGCAACAGATGGCA 59.891 50.0 0.00 0.00 41.43 4.92 F
2260 3203 0.035915 GACTTGGGTTCAGGAGCTCC 60.036 60.0 26.22 26.22 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2047 2990 0.165295 CTGCTGATGACACAGTTGCG 59.835 55.0 0.00 0.0 39.73 4.85 R
2272 3215 0.249120 TGTCGGCGAACCATTCTGAT 59.751 50.0 12.92 0.0 34.57 2.90 R
3345 4295 0.110056 GTGTTGAGCGCTCACCATTG 60.110 55.0 35.40 0.0 39.66 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.227276 CTAGACCGCCGGCCTCAT 61.227 66.667 23.46 7.54 0.00 2.90
25 26 3.214250 CTAGACCGCCGGCCTCATC 62.214 68.421 23.46 13.24 0.00 2.92
53 54 4.717629 GCGAGGCCGGGCAAAAAC 62.718 66.667 31.59 14.01 36.06 2.43
54 55 4.398598 CGAGGCCGGGCAAAAACG 62.399 66.667 31.59 21.17 0.00 3.60
55 56 3.292159 GAGGCCGGGCAAAAACGT 61.292 61.111 31.59 7.16 0.00 3.99
56 57 3.263503 GAGGCCGGGCAAAAACGTC 62.264 63.158 31.59 13.26 0.00 4.34
57 58 4.351938 GGCCGGGCAAAAACGTCC 62.352 66.667 25.33 0.00 0.00 4.79
58 59 3.292159 GCCGGGCAAAAACGTCCT 61.292 61.111 15.62 0.00 0.00 3.85
59 60 2.642700 CCGGGCAAAAACGTCCTG 59.357 61.111 0.00 0.00 0.00 3.86
60 61 2.642700 CGGGCAAAAACGTCCTGG 59.357 61.111 0.00 0.00 0.00 4.45
61 62 2.338620 GGGCAAAAACGTCCTGGC 59.661 61.111 8.88 8.88 35.03 4.85
62 63 2.338620 GGCAAAAACGTCCTGGCC 59.661 61.111 0.00 0.00 0.00 5.36
63 64 2.338620 GCAAAAACGTCCTGGCCC 59.661 61.111 0.00 0.00 0.00 5.80
64 65 2.494530 GCAAAAACGTCCTGGCCCA 61.495 57.895 0.00 0.00 0.00 5.36
65 66 1.362355 CAAAAACGTCCTGGCCCAC 59.638 57.895 0.00 0.00 0.00 4.61
66 67 1.830847 AAAAACGTCCTGGCCCACC 60.831 57.895 0.00 0.00 0.00 4.61
67 68 4.636435 AAACGTCCTGGCCCACCG 62.636 66.667 0.00 0.00 39.70 4.94
137 138 4.814294 CACAGGGCCGCGTACCTC 62.814 72.222 15.04 5.95 34.05 3.85
142 143 3.766691 GGCCGCGTACCTCCTCAA 61.767 66.667 4.92 0.00 0.00 3.02
143 144 2.508663 GCCGCGTACCTCCTCAAC 60.509 66.667 4.92 0.00 0.00 3.18
144 145 2.202570 CCGCGTACCTCCTCAACG 60.203 66.667 4.92 0.00 39.55 4.10
147 148 2.202570 CGTACCTCCTCAACGCCG 60.203 66.667 0.00 0.00 0.00 6.46
148 149 2.508663 GTACCTCCTCAACGCCGC 60.509 66.667 0.00 0.00 0.00 6.53
149 150 2.678934 TACCTCCTCAACGCCGCT 60.679 61.111 0.00 0.00 0.00 5.52
150 151 3.001902 TACCTCCTCAACGCCGCTG 62.002 63.158 0.00 0.00 0.00 5.18
188 189 2.032681 GGCAACGAGTTGGGCTCT 59.967 61.111 16.50 0.00 41.98 4.09
189 190 2.328099 GGCAACGAGTTGGGCTCTG 61.328 63.158 16.50 0.00 41.98 3.35
190 191 1.598130 GCAACGAGTTGGGCTCTGT 60.598 57.895 16.50 0.00 41.98 3.41
191 192 1.845809 GCAACGAGTTGGGCTCTGTG 61.846 60.000 16.50 0.00 41.98 3.66
192 193 1.071471 AACGAGTTGGGCTCTGTGG 59.929 57.895 0.00 0.00 41.98 4.17
193 194 2.743928 CGAGTTGGGCTCTGTGGC 60.744 66.667 0.00 0.00 41.98 5.01
194 195 2.753029 GAGTTGGGCTCTGTGGCT 59.247 61.111 3.30 0.00 40.98 4.75
195 196 1.376553 GAGTTGGGCTCTGTGGCTC 60.377 63.158 3.30 0.00 40.98 4.70
196 197 2.743928 GTTGGGCTCTGTGGCTCG 60.744 66.667 3.30 0.00 41.48 5.03
197 198 3.241530 TTGGGCTCTGTGGCTCGT 61.242 61.111 3.30 0.00 41.48 4.18
198 199 3.240134 TTGGGCTCTGTGGCTCGTC 62.240 63.158 3.30 0.00 41.48 4.20
199 200 4.803426 GGGCTCTGTGGCTCGTCG 62.803 72.222 3.30 0.00 41.48 5.12
225 226 3.000815 GGCAACGAGTTCTTCCACA 57.999 52.632 0.00 0.00 0.00 4.17
226 227 0.586802 GGCAACGAGTTCTTCCACAC 59.413 55.000 0.00 0.00 0.00 3.82
227 228 0.586802 GCAACGAGTTCTTCCACACC 59.413 55.000 0.00 0.00 0.00 4.16
228 229 1.810412 GCAACGAGTTCTTCCACACCT 60.810 52.381 0.00 0.00 0.00 4.00
229 230 1.867233 CAACGAGTTCTTCCACACCTG 59.133 52.381 0.00 0.00 0.00 4.00
230 231 0.393077 ACGAGTTCTTCCACACCTGG 59.607 55.000 0.00 0.00 39.23 4.45
231 232 0.679505 CGAGTTCTTCCACACCTGGA 59.320 55.000 0.00 0.00 45.68 3.86
232 233 1.276421 CGAGTTCTTCCACACCTGGAT 59.724 52.381 0.00 0.00 46.64 3.41
233 234 2.704572 GAGTTCTTCCACACCTGGATG 58.295 52.381 0.00 0.00 46.64 3.51
234 235 2.303022 GAGTTCTTCCACACCTGGATGA 59.697 50.000 0.00 2.07 46.64 2.92
235 236 2.915604 AGTTCTTCCACACCTGGATGAT 59.084 45.455 0.00 0.00 46.64 2.45
236 237 3.012518 GTTCTTCCACACCTGGATGATG 58.987 50.000 0.00 0.00 46.64 3.07
237 238 1.065199 TCTTCCACACCTGGATGATGC 60.065 52.381 0.00 0.00 46.64 3.91
238 239 0.994247 TTCCACACCTGGATGATGCT 59.006 50.000 0.00 0.00 46.64 3.79
239 240 0.543277 TCCACACCTGGATGATGCTC 59.457 55.000 0.00 0.00 42.15 4.26
240 241 0.465097 CCACACCTGGATGATGCTCC 60.465 60.000 0.00 0.00 40.55 4.70
241 242 0.545171 CACACCTGGATGATGCTCCT 59.455 55.000 0.00 0.00 36.20 3.69
242 243 0.545171 ACACCTGGATGATGCTCCTG 59.455 55.000 0.00 0.00 36.20 3.86
243 244 0.835276 CACCTGGATGATGCTCCTGA 59.165 55.000 0.00 0.00 36.61 3.86
244 245 1.211212 CACCTGGATGATGCTCCTGAA 59.789 52.381 0.00 0.00 36.61 3.02
245 246 1.489649 ACCTGGATGATGCTCCTGAAG 59.510 52.381 0.00 0.00 36.61 3.02
289 290 4.835891 CCGCGTCCTACTCCCCCT 62.836 72.222 4.92 0.00 0.00 4.79
290 291 3.528370 CGCGTCCTACTCCCCCTG 61.528 72.222 0.00 0.00 0.00 4.45
291 292 3.851128 GCGTCCTACTCCCCCTGC 61.851 72.222 0.00 0.00 0.00 4.85
292 293 2.363795 CGTCCTACTCCCCCTGCA 60.364 66.667 0.00 0.00 0.00 4.41
293 294 2.722201 CGTCCTACTCCCCCTGCAC 61.722 68.421 0.00 0.00 0.00 4.57
294 295 2.363795 TCCTACTCCCCCTGCACG 60.364 66.667 0.00 0.00 0.00 5.34
295 296 4.162690 CCTACTCCCCCTGCACGC 62.163 72.222 0.00 0.00 0.00 5.34
296 297 4.162690 CTACTCCCCCTGCACGCC 62.163 72.222 0.00 0.00 0.00 5.68
301 302 4.778143 CCCCCTGCACGCCACTAC 62.778 72.222 0.00 0.00 0.00 2.73
302 303 3.706373 CCCCTGCACGCCACTACT 61.706 66.667 0.00 0.00 0.00 2.57
303 304 2.125512 CCCTGCACGCCACTACTC 60.126 66.667 0.00 0.00 0.00 2.59
304 305 2.125512 CCTGCACGCCACTACTCC 60.126 66.667 0.00 0.00 0.00 3.85
305 306 2.650116 CCTGCACGCCACTACTCCT 61.650 63.158 0.00 0.00 0.00 3.69
306 307 1.320344 CCTGCACGCCACTACTCCTA 61.320 60.000 0.00 0.00 0.00 2.94
307 308 0.179134 CTGCACGCCACTACTCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
308 309 0.611062 TGCACGCCACTACTCCTACT 60.611 55.000 0.00 0.00 0.00 2.57
309 310 0.100861 GCACGCCACTACTCCTACTC 59.899 60.000 0.00 0.00 0.00 2.59
310 311 0.739561 CACGCCACTACTCCTACTCC 59.260 60.000 0.00 0.00 0.00 3.85
311 312 0.330604 ACGCCACTACTCCTACTCCA 59.669 55.000 0.00 0.00 0.00 3.86
312 313 1.025812 CGCCACTACTCCTACTCCAG 58.974 60.000 0.00 0.00 0.00 3.86
313 314 1.408405 CGCCACTACTCCTACTCCAGA 60.408 57.143 0.00 0.00 0.00 3.86
314 315 2.025898 GCCACTACTCCTACTCCAGAC 58.974 57.143 0.00 0.00 0.00 3.51
315 316 2.657143 CCACTACTCCTACTCCAGACC 58.343 57.143 0.00 0.00 0.00 3.85
316 317 2.657143 CACTACTCCTACTCCAGACCC 58.343 57.143 0.00 0.00 0.00 4.46
317 318 1.570024 ACTACTCCTACTCCAGACCCC 59.430 57.143 0.00 0.00 0.00 4.95
318 319 0.549950 TACTCCTACTCCAGACCCCG 59.450 60.000 0.00 0.00 0.00 5.73
319 320 1.455959 CTCCTACTCCAGACCCCGG 60.456 68.421 0.00 0.00 0.00 5.73
320 321 1.932231 TCCTACTCCAGACCCCGGA 60.932 63.158 0.73 0.00 0.00 5.14
321 322 1.757340 CCTACTCCAGACCCCGGAC 60.757 68.421 0.73 0.00 0.00 4.79
322 323 1.757340 CTACTCCAGACCCCGGACC 60.757 68.421 0.73 0.00 0.00 4.46
323 324 2.509931 CTACTCCAGACCCCGGACCA 62.510 65.000 0.73 0.00 0.00 4.02
324 325 2.096707 TACTCCAGACCCCGGACCAA 62.097 60.000 0.73 0.00 0.00 3.67
325 326 1.995626 CTCCAGACCCCGGACCAAT 60.996 63.158 0.73 0.00 0.00 3.16
326 327 1.972660 CTCCAGACCCCGGACCAATC 61.973 65.000 0.73 0.00 0.00 2.67
327 328 2.590092 CAGACCCCGGACCAATCC 59.410 66.667 0.73 0.00 42.28 3.01
328 329 2.124085 AGACCCCGGACCAATCCA 59.876 61.111 0.73 0.00 46.67 3.41
329 330 1.540367 AGACCCCGGACCAATCCAA 60.540 57.895 0.73 0.00 46.67 3.53
330 331 1.378119 GACCCCGGACCAATCCAAC 60.378 63.158 0.73 0.00 46.67 3.77
331 332 2.044352 CCCCGGACCAATCCAACC 60.044 66.667 0.73 0.00 46.67 3.77
332 333 2.437716 CCCGGACCAATCCAACCG 60.438 66.667 0.73 0.00 46.67 4.44
333 334 2.349755 CCGGACCAATCCAACCGT 59.650 61.111 0.00 0.00 46.67 4.83
334 335 1.597989 CCGGACCAATCCAACCGTA 59.402 57.895 0.00 0.00 46.67 4.02
335 336 0.461339 CCGGACCAATCCAACCGTAG 60.461 60.000 0.00 0.00 46.67 3.51
336 337 1.087771 CGGACCAATCCAACCGTAGC 61.088 60.000 0.00 0.00 46.67 3.58
337 338 1.087771 GGACCAATCCAACCGTAGCG 61.088 60.000 0.00 0.00 45.47 4.26
338 339 1.702491 GACCAATCCAACCGTAGCGC 61.702 60.000 0.00 0.00 0.00 5.92
339 340 1.449601 CCAATCCAACCGTAGCGCT 60.450 57.895 17.26 17.26 0.00 5.92
342 343 0.743345 AATCCAACCGTAGCGCTTCC 60.743 55.000 18.68 5.87 0.00 3.46
353 354 0.447801 AGCGCTTCCAATAAACTGCG 59.552 50.000 2.64 0.00 45.12 5.18
372 373 3.911137 TGCGAACTTGCAACACCA 58.089 50.000 0.00 0.00 43.02 4.17
402 403 1.467734 CAGAACTGCCAGATGTGCTTC 59.532 52.381 0.00 0.00 0.00 3.86
403 404 1.072806 AGAACTGCCAGATGTGCTTCA 59.927 47.619 0.00 0.00 0.00 3.02
408 409 1.338484 TGCCAGATGTGCTTCAGAGAC 60.338 52.381 0.00 0.00 0.00 3.36
409 410 1.338484 GCCAGATGTGCTTCAGAGACA 60.338 52.381 0.00 0.00 0.00 3.41
411 412 2.028294 CCAGATGTGCTTCAGAGACAGT 60.028 50.000 0.00 0.00 0.00 3.55
412 413 2.994578 CAGATGTGCTTCAGAGACAGTG 59.005 50.000 0.00 0.00 0.00 3.66
413 414 1.731160 GATGTGCTTCAGAGACAGTGC 59.269 52.381 0.00 0.00 0.00 4.40
414 415 0.465287 TGTGCTTCAGAGACAGTGCA 59.535 50.000 0.00 0.00 0.00 4.57
415 416 1.134431 TGTGCTTCAGAGACAGTGCAA 60.134 47.619 0.00 0.00 32.10 4.08
416 417 1.262683 GTGCTTCAGAGACAGTGCAAC 59.737 52.381 0.00 0.00 32.10 4.17
417 418 1.134431 TGCTTCAGAGACAGTGCAACA 60.134 47.619 0.00 0.00 41.43 3.33
418 419 1.530293 GCTTCAGAGACAGTGCAACAG 59.470 52.381 0.00 0.00 41.43 3.16
419 420 2.804572 GCTTCAGAGACAGTGCAACAGA 60.805 50.000 0.00 0.00 41.43 3.41
420 421 3.661944 CTTCAGAGACAGTGCAACAGAT 58.338 45.455 0.00 0.00 41.43 2.90
421 422 3.036075 TCAGAGACAGTGCAACAGATG 57.964 47.619 0.00 0.00 41.43 2.90
422 423 2.074576 CAGAGACAGTGCAACAGATGG 58.925 52.381 0.00 0.00 41.43 3.51
423 424 0.801251 GAGACAGTGCAACAGATGGC 59.199 55.000 0.00 0.00 41.43 4.40
424 425 0.109153 AGACAGTGCAACAGATGGCA 59.891 50.000 0.00 0.00 41.43 4.92
474 476 4.882671 TTCTGTTGTTCTGCTTCTCAAC 57.117 40.909 0.00 0.00 40.03 3.18
475 477 4.142609 TCTGTTGTTCTGCTTCTCAACT 57.857 40.909 13.18 0.00 40.20 3.16
476 478 4.122776 TCTGTTGTTCTGCTTCTCAACTC 58.877 43.478 13.18 0.00 40.20 3.01
477 479 4.125703 CTGTTGTTCTGCTTCTCAACTCT 58.874 43.478 13.18 0.00 40.20 3.24
478 480 3.873361 TGTTGTTCTGCTTCTCAACTCTG 59.127 43.478 13.18 0.00 40.20 3.35
479 481 4.122776 GTTGTTCTGCTTCTCAACTCTGA 58.877 43.478 0.00 0.00 37.67 3.27
480 482 4.613925 TGTTCTGCTTCTCAACTCTGAT 57.386 40.909 0.00 0.00 0.00 2.90
481 483 4.313282 TGTTCTGCTTCTCAACTCTGATG 58.687 43.478 0.00 0.00 0.00 3.07
482 484 2.969990 TCTGCTTCTCAACTCTGATGC 58.030 47.619 0.00 0.00 35.02 3.91
483 485 2.301009 TCTGCTTCTCAACTCTGATGCA 59.699 45.455 0.00 0.00 39.77 3.96
484 486 3.072211 CTGCTTCTCAACTCTGATGCAA 58.928 45.455 0.00 0.00 40.88 4.08
485 487 3.072211 TGCTTCTCAACTCTGATGCAAG 58.928 45.455 0.00 0.00 39.34 4.01
486 488 3.072944 GCTTCTCAACTCTGATGCAAGT 58.927 45.455 0.00 0.00 34.71 3.16
487 489 4.248859 GCTTCTCAACTCTGATGCAAGTA 58.751 43.478 0.00 0.00 34.71 2.24
488 490 4.874966 GCTTCTCAACTCTGATGCAAGTAT 59.125 41.667 0.00 0.00 34.71 2.12
489 491 5.353678 GCTTCTCAACTCTGATGCAAGTATT 59.646 40.000 0.00 0.00 34.71 1.89
490 492 6.128063 GCTTCTCAACTCTGATGCAAGTATTT 60.128 38.462 0.00 0.00 34.71 1.40
491 493 7.574592 GCTTCTCAACTCTGATGCAAGTATTTT 60.575 37.037 0.00 0.00 34.71 1.82
492 494 7.750229 TCTCAACTCTGATGCAAGTATTTTT 57.250 32.000 0.00 0.00 0.00 1.94
514 516 0.747852 TTTTTGAACCGGGCTGAACC 59.252 50.000 6.32 0.00 37.93 3.62
526 528 2.349590 GGCTGAACCCATTTTCATTGC 58.650 47.619 0.00 0.00 34.96 3.56
527 529 2.289569 GGCTGAACCCATTTTCATTGCA 60.290 45.455 0.00 0.00 34.96 4.08
528 530 3.401182 GCTGAACCCATTTTCATTGCAA 58.599 40.909 0.00 0.00 34.96 4.08
529 531 3.814283 GCTGAACCCATTTTCATTGCAAA 59.186 39.130 1.71 0.00 34.96 3.68
530 532 4.456566 GCTGAACCCATTTTCATTGCAAAT 59.543 37.500 1.71 0.00 34.96 2.32
531 533 5.618195 GCTGAACCCATTTTCATTGCAAATG 60.618 40.000 12.92 12.92 40.11 2.32
532 534 5.618236 TGAACCCATTTTCATTGCAAATGA 58.382 33.333 19.21 5.34 42.10 2.57
533 535 6.060136 TGAACCCATTTTCATTGCAAATGAA 58.940 32.000 19.21 11.30 42.10 2.57
534 536 5.945466 ACCCATTTTCATTGCAAATGAAC 57.055 34.783 19.21 0.00 42.10 3.18
535 537 4.451774 ACCCATTTTCATTGCAAATGAACG 59.548 37.500 19.21 10.70 42.10 3.95
536 538 4.142859 CCCATTTTCATTGCAAATGAACGG 60.143 41.667 19.21 17.27 42.10 4.44
537 539 4.689812 CCATTTTCATTGCAAATGAACGGA 59.310 37.500 19.21 11.05 42.10 4.69
538 540 5.178996 CCATTTTCATTGCAAATGAACGGAA 59.821 36.000 19.21 12.89 42.10 4.30
539 541 6.293298 CCATTTTCATTGCAAATGAACGGAAA 60.293 34.615 19.21 12.65 42.10 3.13
540 542 6.857777 TTTTCATTGCAAATGAACGGAAAT 57.142 29.167 18.04 0.00 37.71 2.17
541 543 7.953158 TTTTCATTGCAAATGAACGGAAATA 57.047 28.000 18.04 5.40 37.71 1.40
542 544 6.942886 TTCATTGCAAATGAACGGAAATAC 57.057 33.333 1.71 0.00 33.55 1.89
543 545 6.018589 TCATTGCAAATGAACGGAAATACA 57.981 33.333 1.71 0.00 0.00 2.29
544 546 6.092092 TCATTGCAAATGAACGGAAATACAG 58.908 36.000 1.71 0.00 0.00 2.74
545 547 3.832276 TGCAAATGAACGGAAATACAGC 58.168 40.909 0.00 0.00 0.00 4.40
546 548 3.254411 TGCAAATGAACGGAAATACAGCA 59.746 39.130 0.00 0.00 0.00 4.41
547 549 3.853671 GCAAATGAACGGAAATACAGCAG 59.146 43.478 0.00 0.00 0.00 4.24
548 550 4.615912 GCAAATGAACGGAAATACAGCAGT 60.616 41.667 0.00 0.00 0.00 4.40
549 551 5.460646 CAAATGAACGGAAATACAGCAGTT 58.539 37.500 0.00 0.00 0.00 3.16
550 552 5.705609 AATGAACGGAAATACAGCAGTTT 57.294 34.783 0.00 0.00 0.00 2.66
551 553 4.742438 TGAACGGAAATACAGCAGTTTC 57.258 40.909 0.00 0.00 34.42 2.78
552 554 4.385825 TGAACGGAAATACAGCAGTTTCT 58.614 39.130 0.00 0.00 35.29 2.52
553 555 5.543714 TGAACGGAAATACAGCAGTTTCTA 58.456 37.500 0.00 0.00 35.29 2.10
554 556 5.637810 TGAACGGAAATACAGCAGTTTCTAG 59.362 40.000 0.00 0.00 35.29 2.43
555 557 5.401531 ACGGAAATACAGCAGTTTCTAGA 57.598 39.130 0.00 0.00 35.29 2.43
556 558 5.790593 ACGGAAATACAGCAGTTTCTAGAA 58.209 37.500 0.00 0.00 35.29 2.10
557 559 6.228258 ACGGAAATACAGCAGTTTCTAGAAA 58.772 36.000 13.99 13.99 35.29 2.52
571 573 5.462530 TTCTAGAAACATTGTCACGAGGA 57.537 39.130 1.68 0.00 0.00 3.71
572 574 5.060662 TCTAGAAACATTGTCACGAGGAG 57.939 43.478 0.00 0.00 0.00 3.69
573 575 3.045601 AGAAACATTGTCACGAGGAGG 57.954 47.619 0.00 0.00 0.00 4.30
574 576 2.076863 GAAACATTGTCACGAGGAGGG 58.923 52.381 0.00 0.00 0.00 4.30
575 577 1.348064 AACATTGTCACGAGGAGGGA 58.652 50.000 0.00 0.00 0.00 4.20
592 594 3.110705 AGGGACATCTGATGCAAGTACT 58.889 45.455 17.24 5.08 0.00 2.73
593 595 3.118482 AGGGACATCTGATGCAAGTACTG 60.118 47.826 17.24 0.00 0.00 2.74
599 601 6.800543 ACATCTGATGCAAGTACTGTAGTAG 58.199 40.000 17.24 0.00 0.00 2.57
624 711 8.395633 AGTATATTGTTCTTTCGTTGCAATACC 58.604 33.333 0.59 0.00 35.65 2.73
629 716 3.879427 TCTTTCGTTGCAATACCGTTTG 58.121 40.909 0.59 0.00 0.00 2.93
741 836 1.891060 GCACCGACAGTCTTCTTGCG 61.891 60.000 0.00 0.00 0.00 4.85
814 910 1.006688 TCGTGCTAGCAAGTCGCAA 60.007 52.632 26.48 7.62 46.13 4.85
906 1003 2.028112 TCCTCCGTTCAACCAGATTCAG 60.028 50.000 0.00 0.00 0.00 3.02
926 1023 2.334653 CGGCGATCTCAGAGCTCC 59.665 66.667 10.93 0.00 0.00 4.70
975 1080 3.192799 CGAGAGCAGGTAGGGAGAA 57.807 57.895 0.00 0.00 0.00 2.87
982 1087 2.313342 AGCAGGTAGGGAGAAGAGAAGA 59.687 50.000 0.00 0.00 0.00 2.87
1036 1141 3.393970 CCAGGAAGAGGGCGCAGA 61.394 66.667 10.83 0.00 0.00 4.26
1053 1158 0.321919 AGAGATGGAGCAAGCGCAAA 60.322 50.000 11.47 0.00 42.27 3.68
1407 1512 0.612744 TCATGTTCCGGCATCTCACA 59.387 50.000 0.00 0.00 0.00 3.58
1419 1542 2.564771 CATCTCACATACGCCACCAAT 58.435 47.619 0.00 0.00 0.00 3.16
1556 2100 0.172352 AACAACGCCACCAACAACAG 59.828 50.000 0.00 0.00 0.00 3.16
1607 2526 0.752054 AACAATGCCACCACCAACAG 59.248 50.000 0.00 0.00 0.00 3.16
1612 2531 2.123939 CCACCACCAACAGCACCA 60.124 61.111 0.00 0.00 0.00 4.17
1628 2547 3.063704 CATGGAAGCCAGCGCCAA 61.064 61.111 2.29 0.00 36.75 4.52
1674 2593 1.285641 CGGCACCAACAACACCATC 59.714 57.895 0.00 0.00 0.00 3.51
1752 2686 1.040339 ACGGCACCAACAACACCATT 61.040 50.000 0.00 0.00 0.00 3.16
1795 2735 3.112709 GTGACGAAGCGGACCTGC 61.113 66.667 0.00 0.68 0.00 4.85
1857 2797 3.692406 GGGGTCGTCCACTTCGCT 61.692 66.667 0.04 0.00 37.22 4.93
1959 2899 4.318546 GCAGCTTTGCAACATCTTTCTTTG 60.319 41.667 0.00 0.00 34.41 2.77
1971 2911 4.213564 TCTTTCTTTGCCTTTGCCAAAA 57.786 36.364 0.00 0.00 36.33 2.44
1972 2912 4.583871 TCTTTCTTTGCCTTTGCCAAAAA 58.416 34.783 0.00 0.00 36.33 1.94
2002 2945 6.294453 CCAACACAGGAGCAACATAATAACAA 60.294 38.462 0.00 0.00 0.00 2.83
2007 2950 6.149474 ACAGGAGCAACATAATAACAACACTC 59.851 38.462 0.00 0.00 0.00 3.51
2008 2951 6.149308 CAGGAGCAACATAATAACAACACTCA 59.851 38.462 0.00 0.00 0.00 3.41
2047 2990 2.047939 GTTGCAGCATGGCCAACC 60.048 61.111 10.96 3.14 35.86 3.77
2073 3016 1.001293 TGTGTCATCAGCAGACCAGAC 59.999 52.381 0.00 0.00 35.15 3.51
2138 3081 1.835494 CTGGTACTCCAAGGACTCGA 58.165 55.000 0.00 0.00 43.81 4.04
2197 3140 1.709147 CTGCACAAGATACAGGCGCC 61.709 60.000 21.89 21.89 0.00 6.53
2260 3203 0.035915 GACTTGGGTTCAGGAGCTCC 60.036 60.000 26.22 26.22 0.00 4.70
2298 3247 2.551270 GTTCGCCGACAGCAACAG 59.449 61.111 0.00 0.00 44.04 3.16
2312 3261 1.018226 CAACAGCTCTTCAGGAGGCG 61.018 60.000 0.00 0.00 42.08 5.52
2343 3292 2.159421 ACTACATCCAGCTTGTACGACG 60.159 50.000 0.00 0.00 0.00 5.12
2396 3345 0.907486 CATCCCTTCTGACTGCTCCA 59.093 55.000 0.00 0.00 0.00 3.86
2435 3384 0.675633 GCACCTTGACATGCCAAAGT 59.324 50.000 0.00 0.00 35.73 2.66
2450 3399 4.101898 TGCCAAAGTACACTCCAGAAGTTA 59.898 41.667 0.00 0.00 35.45 2.24
2467 3416 4.522722 AGTTAAAGAACAGGAGACTCCG 57.477 45.455 15.97 12.90 40.21 4.63
3069 4019 8.514594 ACACGTCTCAAATCATAAATCACAAAT 58.485 29.630 0.00 0.00 0.00 2.32
3191 4141 6.407202 AGACCTAATTCTACATGTTGGTCAC 58.593 40.000 2.30 0.00 43.49 3.67
3192 4142 6.013725 AGACCTAATTCTACATGTTGGTCACA 60.014 38.462 2.30 0.00 43.49 3.58
3194 4144 6.823689 ACCTAATTCTACATGTTGGTCACATC 59.176 38.462 2.30 0.00 43.17 3.06
3195 4145 7.050377 CCTAATTCTACATGTTGGTCACATCT 58.950 38.462 2.30 0.00 43.17 2.90
3196 4146 8.204160 CCTAATTCTACATGTTGGTCACATCTA 58.796 37.037 2.30 0.00 43.17 1.98
3197 4147 9.770097 CTAATTCTACATGTTGGTCACATCTAT 57.230 33.333 2.30 0.00 43.17 1.98
3200 4150 9.935241 ATTCTACATGTTGGTCACATCTATATC 57.065 33.333 2.30 0.00 43.17 1.63
3201 4151 8.712228 TCTACATGTTGGTCACATCTATATCT 57.288 34.615 2.30 0.00 43.17 1.98
3202 4152 9.807921 TCTACATGTTGGTCACATCTATATCTA 57.192 33.333 2.30 0.00 43.17 1.98
3298 4248 2.583472 CCAAAGGGGCAGATCCAAC 58.417 57.895 0.00 0.00 36.21 3.77
3299 4249 1.315257 CCAAAGGGGCAGATCCAACG 61.315 60.000 0.00 0.00 36.21 4.10
3300 4250 0.322456 CAAAGGGGCAGATCCAACGA 60.322 55.000 0.00 0.00 36.21 3.85
3301 4251 0.404040 AAAGGGGCAGATCCAACGAA 59.596 50.000 0.00 0.00 36.21 3.85
3302 4252 0.625849 AAGGGGCAGATCCAACGAAT 59.374 50.000 0.00 0.00 36.21 3.34
3303 4253 0.181350 AGGGGCAGATCCAACGAATC 59.819 55.000 0.00 0.00 36.21 2.52
3304 4254 0.819666 GGGGCAGATCCAACGAATCC 60.820 60.000 0.00 0.00 36.21 3.01
3305 4255 0.819666 GGGCAGATCCAACGAATCCC 60.820 60.000 0.00 0.00 36.21 3.85
3306 4256 1.160329 GGCAGATCCAACGAATCCCG 61.160 60.000 0.00 0.00 38.46 5.14
3307 4257 1.160329 GCAGATCCAACGAATCCCGG 61.160 60.000 0.00 0.00 43.93 5.73
3308 4258 1.146263 AGATCCAACGAATCCCGGC 59.854 57.895 0.00 0.00 43.93 6.13
3309 4259 1.892391 GATCCAACGAATCCCGGCC 60.892 63.158 0.00 0.00 43.93 6.13
3310 4260 3.750373 ATCCAACGAATCCCGGCCG 62.750 63.158 21.04 21.04 43.93 6.13
3311 4261 4.770874 CCAACGAATCCCGGCCGT 62.771 66.667 26.12 4.65 43.93 5.68
3312 4262 3.192922 CAACGAATCCCGGCCGTC 61.193 66.667 26.12 14.15 43.93 4.79
3313 4263 3.697747 AACGAATCCCGGCCGTCA 61.698 61.111 26.12 10.46 43.93 4.35
3314 4264 3.242897 AACGAATCCCGGCCGTCAA 62.243 57.895 26.12 9.29 43.93 3.18
3315 4265 2.435234 CGAATCCCGGCCGTCAAA 60.435 61.111 26.12 6.42 33.91 2.69
3316 4266 1.817941 CGAATCCCGGCCGTCAAAT 60.818 57.895 26.12 8.69 33.91 2.32
3317 4267 1.772063 CGAATCCCGGCCGTCAAATC 61.772 60.000 26.12 14.09 33.91 2.17
3318 4268 0.746563 GAATCCCGGCCGTCAAATCA 60.747 55.000 26.12 0.00 0.00 2.57
3319 4269 0.748005 AATCCCGGCCGTCAAATCAG 60.748 55.000 26.12 5.50 0.00 2.90
3320 4270 2.608970 ATCCCGGCCGTCAAATCAGG 62.609 60.000 26.12 15.50 0.00 3.86
3321 4271 2.046314 CCGGCCGTCAAATCAGGT 60.046 61.111 26.12 0.00 0.00 4.00
3322 4272 2.106683 CCGGCCGTCAAATCAGGTC 61.107 63.158 26.12 0.00 0.00 3.85
3323 4273 1.375396 CGGCCGTCAAATCAGGTCA 60.375 57.895 19.50 0.00 0.00 4.02
3324 4274 0.953471 CGGCCGTCAAATCAGGTCAA 60.953 55.000 19.50 0.00 0.00 3.18
3325 4275 1.463674 GGCCGTCAAATCAGGTCAAT 58.536 50.000 0.00 0.00 0.00 2.57
3326 4276 1.401905 GGCCGTCAAATCAGGTCAATC 59.598 52.381 0.00 0.00 0.00 2.67
3327 4277 1.401905 GCCGTCAAATCAGGTCAATCC 59.598 52.381 0.00 0.00 0.00 3.01
3328 4278 2.710377 CCGTCAAATCAGGTCAATCCA 58.290 47.619 0.00 0.00 39.02 3.41
3329 4279 3.081061 CCGTCAAATCAGGTCAATCCAA 58.919 45.455 0.00 0.00 39.02 3.53
3330 4280 3.119849 CCGTCAAATCAGGTCAATCCAAC 60.120 47.826 0.00 0.00 39.02 3.77
3331 4281 3.424829 CGTCAAATCAGGTCAATCCAACG 60.425 47.826 0.00 0.00 39.02 4.10
3332 4282 3.751175 GTCAAATCAGGTCAATCCAACGA 59.249 43.478 0.00 0.00 39.02 3.85
3333 4283 3.751175 TCAAATCAGGTCAATCCAACGAC 59.249 43.478 0.00 0.00 39.02 4.34
3334 4284 3.703001 AATCAGGTCAATCCAACGACT 57.297 42.857 0.00 0.00 39.02 4.18
3335 4285 2.743636 TCAGGTCAATCCAACGACTC 57.256 50.000 0.00 0.00 39.02 3.36
3336 4286 1.967779 TCAGGTCAATCCAACGACTCA 59.032 47.619 0.00 0.00 39.02 3.41
3337 4287 2.029020 TCAGGTCAATCCAACGACTCAG 60.029 50.000 0.00 0.00 39.02 3.35
3338 4288 1.276421 AGGTCAATCCAACGACTCAGG 59.724 52.381 0.00 0.00 39.02 3.86
3339 4289 1.079503 GTCAATCCAACGACTCAGGC 58.920 55.000 0.00 0.00 0.00 4.85
3340 4290 0.976641 TCAATCCAACGACTCAGGCT 59.023 50.000 0.00 0.00 0.00 4.58
3341 4291 1.081892 CAATCCAACGACTCAGGCTG 58.918 55.000 8.58 8.58 0.00 4.85
3342 4292 0.674895 AATCCAACGACTCAGGCTGC 60.675 55.000 10.34 0.00 0.00 5.25
3343 4293 1.548357 ATCCAACGACTCAGGCTGCT 61.548 55.000 10.34 0.00 0.00 4.24
3344 4294 1.739562 CCAACGACTCAGGCTGCTC 60.740 63.158 10.34 5.79 0.00 4.26
3345 4295 1.739562 CAACGACTCAGGCTGCTCC 60.740 63.158 10.34 0.00 0.00 4.70
3346 4296 2.210013 AACGACTCAGGCTGCTCCA 61.210 57.895 10.34 0.00 37.29 3.86
3347 4297 1.758440 AACGACTCAGGCTGCTCCAA 61.758 55.000 10.34 0.00 37.29 3.53
3348 4298 1.220206 CGACTCAGGCTGCTCCAAT 59.780 57.895 10.34 0.00 37.29 3.16
3349 4299 1.088340 CGACTCAGGCTGCTCCAATG 61.088 60.000 10.34 0.00 37.29 2.82
3350 4300 0.747283 GACTCAGGCTGCTCCAATGG 60.747 60.000 10.34 0.00 37.29 3.16
3351 4301 1.302285 CTCAGGCTGCTCCAATGGT 59.698 57.895 10.34 0.00 37.29 3.55
3352 4302 1.001764 TCAGGCTGCTCCAATGGTG 60.002 57.895 10.34 0.00 37.29 4.17
3353 4303 1.001764 CAGGCTGCTCCAATGGTGA 60.002 57.895 0.00 0.00 37.29 4.02
3354 4304 1.030488 CAGGCTGCTCCAATGGTGAG 61.030 60.000 0.00 0.00 37.29 3.51
3358 4308 2.437359 GCTCCAATGGTGAGCGCT 60.437 61.111 11.27 11.27 45.05 5.92
3359 4309 2.467826 GCTCCAATGGTGAGCGCTC 61.468 63.158 30.42 30.42 45.05 5.03
3360 4310 1.078918 CTCCAATGGTGAGCGCTCA 60.079 57.895 35.30 35.30 37.24 4.26
3361 4311 0.674581 CTCCAATGGTGAGCGCTCAA 60.675 55.000 39.63 26.77 41.85 3.02
3366 4316 2.661866 GGTGAGCGCTCAACACGT 60.662 61.111 42.62 5.80 46.18 4.49
3367 4317 2.244651 GGTGAGCGCTCAACACGTT 61.245 57.895 42.62 4.93 46.18 3.99
3368 4318 1.641677 GTGAGCGCTCAACACGTTT 59.358 52.632 39.63 0.00 41.85 3.60
3369 4319 0.856641 GTGAGCGCTCAACACGTTTA 59.143 50.000 39.63 13.11 41.85 2.01
3370 4320 1.136611 GTGAGCGCTCAACACGTTTAG 60.137 52.381 39.63 0.00 41.85 1.85
3371 4321 1.137513 GAGCGCTCAACACGTTTAGT 58.862 50.000 31.91 0.00 0.00 2.24
3372 4322 3.675666 TGAGCGCTCAACACGTTTAGTG 61.676 50.000 36.62 1.23 44.66 2.74
3386 4336 7.056002 CACGTTTAGTGTGCAGTTAATATCA 57.944 36.000 0.00 0.00 45.51 2.15
3387 4337 7.684670 CACGTTTAGTGTGCAGTTAATATCAT 58.315 34.615 0.00 0.00 45.51 2.45
3388 4338 8.813282 CACGTTTAGTGTGCAGTTAATATCATA 58.187 33.333 0.00 0.00 45.51 2.15
3389 4339 8.814235 ACGTTTAGTGTGCAGTTAATATCATAC 58.186 33.333 0.00 0.00 0.00 2.39
3390 4340 8.273557 CGTTTAGTGTGCAGTTAATATCATACC 58.726 37.037 0.00 0.00 0.00 2.73
3391 4341 9.104965 GTTTAGTGTGCAGTTAATATCATACCA 57.895 33.333 0.00 0.00 0.00 3.25
3392 4342 9.674068 TTTAGTGTGCAGTTAATATCATACCAA 57.326 29.630 0.00 0.00 0.00 3.67
3393 4343 9.674068 TTAGTGTGCAGTTAATATCATACCAAA 57.326 29.630 0.00 0.00 0.00 3.28
3394 4344 8.752005 AGTGTGCAGTTAATATCATACCAAAT 57.248 30.769 0.00 0.00 0.00 2.32
3395 4345 9.845740 AGTGTGCAGTTAATATCATACCAAATA 57.154 29.630 0.00 0.00 0.00 1.40
3409 4359 8.192743 TCATACCAAATATTAATGCCAATGCT 57.807 30.769 0.00 0.00 38.71 3.79
3410 4360 9.306777 TCATACCAAATATTAATGCCAATGCTA 57.693 29.630 0.00 0.00 38.71 3.49
3411 4361 9.926158 CATACCAAATATTAATGCCAATGCTAA 57.074 29.630 0.00 0.00 38.71 3.09
3414 4364 8.649591 ACCAAATATTAATGCCAATGCTAATCA 58.350 29.630 0.00 0.00 38.71 2.57
3415 4365 8.928733 CCAAATATTAATGCCAATGCTAATCAC 58.071 33.333 0.00 0.00 38.71 3.06
3416 4366 9.478768 CAAATATTAATGCCAATGCTAATCACA 57.521 29.630 0.00 0.00 38.71 3.58
3420 4370 7.822161 TTAATGCCAATGCTAATCACATACT 57.178 32.000 0.00 0.00 38.71 2.12
3421 4371 6.720112 AATGCCAATGCTAATCACATACTT 57.280 33.333 0.00 0.00 38.71 2.24
3422 4372 7.822161 AATGCCAATGCTAATCACATACTTA 57.178 32.000 0.00 0.00 38.71 2.24
3423 4373 7.822161 ATGCCAATGCTAATCACATACTTAA 57.178 32.000 0.00 0.00 38.71 1.85
3424 4374 7.822161 TGCCAATGCTAATCACATACTTAAT 57.178 32.000 0.00 0.00 38.71 1.40
3425 4375 8.916628 TGCCAATGCTAATCACATACTTAATA 57.083 30.769 0.00 0.00 38.71 0.98
3426 4376 9.519191 TGCCAATGCTAATCACATACTTAATAT 57.481 29.630 0.00 0.00 38.71 1.28
3427 4377 9.778993 GCCAATGCTAATCACATACTTAATATG 57.221 33.333 0.00 0.00 39.66 1.78
3428 4378 9.778993 CCAATGCTAATCACATACTTAATATGC 57.221 33.333 0.00 0.00 44.12 3.14
3491 4441 3.510719 ACCAAATATCAACGTGCATTGC 58.489 40.909 0.46 0.46 0.00 3.56
3492 4442 3.056962 ACCAAATATCAACGTGCATTGCA 60.057 39.130 7.38 7.38 35.60 4.08
3505 4455 3.816091 TGCATTGCACGTACACATTTAC 58.184 40.909 7.38 0.00 31.71 2.01
3506 4456 3.500299 TGCATTGCACGTACACATTTACT 59.500 39.130 7.38 0.00 31.71 2.24
3507 4457 4.691216 TGCATTGCACGTACACATTTACTA 59.309 37.500 7.38 0.00 31.71 1.82
3508 4458 5.163903 TGCATTGCACGTACACATTTACTAG 60.164 40.000 7.38 0.00 31.71 2.57
3509 4459 5.163893 GCATTGCACGTACACATTTACTAGT 60.164 40.000 3.15 0.00 0.00 2.57
3510 4460 6.035220 GCATTGCACGTACACATTTACTAGTA 59.965 38.462 3.15 0.00 0.00 1.82
3511 4461 7.412129 GCATTGCACGTACACATTTACTAGTAA 60.412 37.037 11.38 11.38 0.00 2.24
3512 4462 7.571089 TTGCACGTACACATTTACTAGTAAG 57.429 36.000 14.73 7.73 0.00 2.34
3513 4463 6.680810 TGCACGTACACATTTACTAGTAAGT 58.319 36.000 14.73 9.92 39.91 2.24
3514 4464 7.815641 TGCACGTACACATTTACTAGTAAGTA 58.184 34.615 14.73 10.89 37.15 2.24
3515 4465 7.750458 TGCACGTACACATTTACTAGTAAGTAC 59.250 37.037 21.67 21.67 37.94 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.214250 GATGAGGCCGGCGGTCTAG 62.214 68.421 35.61 3.95 38.01 2.43
8 9 3.224324 GATGAGGCCGGCGGTCTA 61.224 66.667 35.61 21.54 38.01 2.59
36 37 4.717629 GTTTTTGCCCGGCCTCGC 62.718 66.667 7.03 1.89 34.56 5.03
37 38 4.398598 CGTTTTTGCCCGGCCTCG 62.399 66.667 7.03 0.89 0.00 4.63
38 39 3.263503 GACGTTTTTGCCCGGCCTC 62.264 63.158 7.03 0.00 0.00 4.70
39 40 3.292159 GACGTTTTTGCCCGGCCT 61.292 61.111 7.03 0.00 0.00 5.19
40 41 4.351938 GGACGTTTTTGCCCGGCC 62.352 66.667 7.03 0.00 46.48 6.13
41 42 3.292159 AGGACGTTTTTGCCCGGC 61.292 61.111 1.04 1.04 0.00 6.13
42 43 2.642700 CAGGACGTTTTTGCCCGG 59.357 61.111 0.00 0.00 0.00 5.73
43 44 2.642700 CCAGGACGTTTTTGCCCG 59.357 61.111 0.00 0.00 0.00 6.13
44 45 2.338620 GCCAGGACGTTTTTGCCC 59.661 61.111 0.00 0.00 0.00 5.36
45 46 2.338620 GGCCAGGACGTTTTTGCC 59.661 61.111 0.00 4.68 0.00 4.52
46 47 2.338620 GGGCCAGGACGTTTTTGC 59.661 61.111 4.39 0.00 0.00 3.68
47 48 1.362355 GTGGGCCAGGACGTTTTTG 59.638 57.895 6.40 0.00 0.00 2.44
48 49 1.830847 GGTGGGCCAGGACGTTTTT 60.831 57.895 6.40 0.00 34.09 1.94
49 50 2.203437 GGTGGGCCAGGACGTTTT 60.203 61.111 6.40 0.00 34.09 2.43
50 51 4.636435 CGGTGGGCCAGGACGTTT 62.636 66.667 6.40 0.00 34.09 3.60
120 121 4.814294 GAGGTACGCGGCCCTGTG 62.814 72.222 21.62 0.00 0.00 3.66
125 126 3.766691 TTGAGGAGGTACGCGGCC 61.767 66.667 12.47 12.86 0.00 6.13
126 127 2.508663 GTTGAGGAGGTACGCGGC 60.509 66.667 12.47 2.06 0.00 6.53
127 128 2.202570 CGTTGAGGAGGTACGCGG 60.203 66.667 12.47 0.00 0.00 6.46
130 131 2.202570 CGGCGTTGAGGAGGTACG 60.203 66.667 0.00 0.00 38.26 3.67
131 132 2.508663 GCGGCGTTGAGGAGGTAC 60.509 66.667 9.37 0.00 0.00 3.34
132 133 2.678934 AGCGGCGTTGAGGAGGTA 60.679 61.111 9.37 0.00 0.00 3.08
133 134 4.379243 CAGCGGCGTTGAGGAGGT 62.379 66.667 19.39 0.00 0.00 3.85
168 169 3.723348 GCCCAACTCGTTGCCGAC 61.723 66.667 4.30 0.00 38.40 4.79
169 170 3.876589 GAGCCCAACTCGTTGCCGA 62.877 63.158 4.30 0.00 41.73 5.54
170 171 3.423154 GAGCCCAACTCGTTGCCG 61.423 66.667 4.30 0.00 39.16 5.69
177 178 1.376553 GAGCCACAGAGCCCAACTC 60.377 63.158 0.00 0.00 46.66 3.01
178 179 2.753029 GAGCCACAGAGCCCAACT 59.247 61.111 0.00 0.00 0.00 3.16
179 180 2.743928 CGAGCCACAGAGCCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
180 181 3.240134 GACGAGCCACAGAGCCCAA 62.240 63.158 0.00 0.00 0.00 4.12
181 182 3.695606 GACGAGCCACAGAGCCCA 61.696 66.667 0.00 0.00 0.00 5.36
182 183 4.803426 CGACGAGCCACAGAGCCC 62.803 72.222 0.00 0.00 0.00 5.19
204 205 0.599204 TGGAAGAACTCGTTGCCGAC 60.599 55.000 0.00 0.00 38.40 4.79
205 206 0.599204 GTGGAAGAACTCGTTGCCGA 60.599 55.000 0.00 0.00 41.73 5.54
206 207 0.878523 TGTGGAAGAACTCGTTGCCG 60.879 55.000 0.00 0.00 0.00 5.69
207 208 0.586802 GTGTGGAAGAACTCGTTGCC 59.413 55.000 0.00 0.00 0.00 4.52
208 209 0.586802 GGTGTGGAAGAACTCGTTGC 59.413 55.000 0.00 0.00 0.00 4.17
209 210 1.867233 CAGGTGTGGAAGAACTCGTTG 59.133 52.381 0.00 0.00 0.00 4.10
210 211 2.240493 CAGGTGTGGAAGAACTCGTT 57.760 50.000 0.00 0.00 0.00 3.85
211 212 3.989104 CAGGTGTGGAAGAACTCGT 57.011 52.632 0.00 0.00 0.00 4.18
221 222 0.465097 GGAGCATCATCCAGGTGTGG 60.465 60.000 0.00 0.00 40.97 4.17
222 223 0.545171 AGGAGCATCATCCAGGTGTG 59.455 55.000 0.00 0.00 42.26 3.82
223 224 0.545171 CAGGAGCATCATCCAGGTGT 59.455 55.000 0.00 0.00 42.26 4.16
224 225 0.835276 TCAGGAGCATCATCCAGGTG 59.165 55.000 0.00 0.00 42.26 4.00
225 226 1.489649 CTTCAGGAGCATCATCCAGGT 59.510 52.381 0.00 0.00 42.26 4.00
226 227 2.257691 CTTCAGGAGCATCATCCAGG 57.742 55.000 0.00 0.00 42.26 4.45
272 273 4.835891 AGGGGGAGTAGGACGCGG 62.836 72.222 12.47 0.00 0.00 6.46
273 274 3.528370 CAGGGGGAGTAGGACGCG 61.528 72.222 3.53 3.53 0.00 6.01
274 275 3.851128 GCAGGGGGAGTAGGACGC 61.851 72.222 0.00 0.00 0.00 5.19
275 276 2.363795 TGCAGGGGGAGTAGGACG 60.364 66.667 0.00 0.00 0.00 4.79
276 277 2.722201 CGTGCAGGGGGAGTAGGAC 61.722 68.421 0.00 0.00 0.00 3.85
277 278 2.363795 CGTGCAGGGGGAGTAGGA 60.364 66.667 0.00 0.00 0.00 2.94
278 279 4.162690 GCGTGCAGGGGGAGTAGG 62.163 72.222 8.72 0.00 0.00 3.18
279 280 4.162690 GGCGTGCAGGGGGAGTAG 62.163 72.222 8.72 0.00 0.00 2.57
284 285 4.778143 GTAGTGGCGTGCAGGGGG 62.778 72.222 8.72 0.00 0.00 5.40
285 286 3.665675 GAGTAGTGGCGTGCAGGGG 62.666 68.421 8.72 0.00 0.00 4.79
286 287 2.125512 GAGTAGTGGCGTGCAGGG 60.126 66.667 8.72 0.00 0.00 4.45
287 288 1.320344 TAGGAGTAGTGGCGTGCAGG 61.320 60.000 1.01 1.01 0.00 4.85
288 289 0.179134 GTAGGAGTAGTGGCGTGCAG 60.179 60.000 0.00 0.00 0.00 4.41
289 290 0.611062 AGTAGGAGTAGTGGCGTGCA 60.611 55.000 0.00 0.00 0.00 4.57
290 291 0.100861 GAGTAGGAGTAGTGGCGTGC 59.899 60.000 0.00 0.00 0.00 5.34
291 292 0.739561 GGAGTAGGAGTAGTGGCGTG 59.260 60.000 0.00 0.00 0.00 5.34
292 293 0.330604 TGGAGTAGGAGTAGTGGCGT 59.669 55.000 0.00 0.00 0.00 5.68
293 294 1.025812 CTGGAGTAGGAGTAGTGGCG 58.974 60.000 0.00 0.00 0.00 5.69
294 295 2.025898 GTCTGGAGTAGGAGTAGTGGC 58.974 57.143 0.00 0.00 0.00 5.01
295 296 2.657143 GGTCTGGAGTAGGAGTAGTGG 58.343 57.143 0.00 0.00 0.00 4.00
296 297 2.657143 GGGTCTGGAGTAGGAGTAGTG 58.343 57.143 0.00 0.00 0.00 2.74
297 298 1.570024 GGGGTCTGGAGTAGGAGTAGT 59.430 57.143 0.00 0.00 0.00 2.73
298 299 1.477195 CGGGGTCTGGAGTAGGAGTAG 60.477 61.905 0.00 0.00 0.00 2.57
299 300 0.549950 CGGGGTCTGGAGTAGGAGTA 59.450 60.000 0.00 0.00 0.00 2.59
300 301 1.306970 CGGGGTCTGGAGTAGGAGT 59.693 63.158 0.00 0.00 0.00 3.85
301 302 1.455959 CCGGGGTCTGGAGTAGGAG 60.456 68.421 0.00 0.00 0.00 3.69
302 303 1.932231 TCCGGGGTCTGGAGTAGGA 60.932 63.158 0.00 0.00 0.00 2.94
303 304 1.757340 GTCCGGGGTCTGGAGTAGG 60.757 68.421 0.00 0.00 35.82 3.18
304 305 1.757340 GGTCCGGGGTCTGGAGTAG 60.757 68.421 0.00 0.00 35.82 2.57
305 306 2.096707 TTGGTCCGGGGTCTGGAGTA 62.097 60.000 0.00 0.00 35.82 2.59
306 307 2.765705 ATTGGTCCGGGGTCTGGAGT 62.766 60.000 0.00 0.00 35.82 3.85
307 308 1.972660 GATTGGTCCGGGGTCTGGAG 61.973 65.000 0.00 0.00 35.82 3.86
308 309 1.993391 GATTGGTCCGGGGTCTGGA 60.993 63.158 0.00 0.00 0.00 3.86
309 310 2.590092 GATTGGTCCGGGGTCTGG 59.410 66.667 0.00 0.00 0.00 3.86
310 311 2.590092 GGATTGGTCCGGGGTCTG 59.410 66.667 0.00 0.00 34.13 3.51
318 319 1.087771 CGCTACGGTTGGATTGGTCC 61.088 60.000 0.00 0.00 45.31 4.46
319 320 1.702491 GCGCTACGGTTGGATTGGTC 61.702 60.000 0.00 0.00 0.00 4.02
320 321 1.743995 GCGCTACGGTTGGATTGGT 60.744 57.895 0.00 0.00 0.00 3.67
321 322 1.024579 AAGCGCTACGGTTGGATTGG 61.025 55.000 12.05 0.00 45.71 3.16
322 323 2.466867 AAGCGCTACGGTTGGATTG 58.533 52.632 12.05 0.00 45.71 2.67
329 330 2.004733 GTTTATTGGAAGCGCTACGGT 58.995 47.619 12.05 0.00 40.00 4.83
330 331 2.030457 CAGTTTATTGGAAGCGCTACGG 59.970 50.000 12.05 0.00 0.00 4.02
331 332 2.536928 GCAGTTTATTGGAAGCGCTACG 60.537 50.000 12.05 0.36 0.00 3.51
332 333 2.536928 CGCAGTTTATTGGAAGCGCTAC 60.537 50.000 12.05 7.87 38.68 3.58
333 334 1.663643 CGCAGTTTATTGGAAGCGCTA 59.336 47.619 12.05 0.00 38.68 4.26
334 335 0.447801 CGCAGTTTATTGGAAGCGCT 59.552 50.000 2.64 2.64 38.68 5.92
335 336 2.930168 CGCAGTTTATTGGAAGCGC 58.070 52.632 0.00 0.00 38.68 5.92
371 372 2.826128 TGGCAGTTCTGTAGAGGTACTG 59.174 50.000 14.58 14.58 41.55 2.74
402 403 2.074576 CCATCTGTTGCACTGTCTCTG 58.925 52.381 0.00 0.00 0.00 3.35
403 404 1.610102 GCCATCTGTTGCACTGTCTCT 60.610 52.381 0.00 0.00 0.00 3.10
429 430 1.713647 TGCCATCTGTCCCCCTAAAAA 59.286 47.619 0.00 0.00 0.00 1.94
430 431 1.005450 GTGCCATCTGTCCCCCTAAAA 59.995 52.381 0.00 0.00 0.00 1.52
431 432 0.623723 GTGCCATCTGTCCCCCTAAA 59.376 55.000 0.00 0.00 0.00 1.85
432 433 0.548926 TGTGCCATCTGTCCCCCTAA 60.549 55.000 0.00 0.00 0.00 2.69
433 434 0.327480 ATGTGCCATCTGTCCCCCTA 60.327 55.000 0.00 0.00 0.00 3.53
434 435 1.217057 AATGTGCCATCTGTCCCCCT 61.217 55.000 0.00 0.00 0.00 4.79
435 436 0.324645 AAATGTGCCATCTGTCCCCC 60.325 55.000 0.00 0.00 0.00 5.40
436 437 1.106285 GAAATGTGCCATCTGTCCCC 58.894 55.000 0.00 0.00 0.00 4.81
437 438 1.747355 CAGAAATGTGCCATCTGTCCC 59.253 52.381 0.00 0.00 36.64 4.46
458 459 4.406648 TCAGAGTTGAGAAGCAGAACAA 57.593 40.909 0.00 0.00 0.00 2.83
495 497 0.747852 GGTTCAGCCCGGTTCAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
496 498 2.421220 GGTTCAGCCCGGTTCAAAA 58.579 52.632 0.00 0.00 0.00 2.44
497 499 4.167597 GGTTCAGCCCGGTTCAAA 57.832 55.556 0.00 0.00 0.00 2.69
506 508 2.289569 TGCAATGAAAATGGGTTCAGCC 60.290 45.455 0.00 0.00 40.72 4.85
507 509 3.042871 TGCAATGAAAATGGGTTCAGC 57.957 42.857 0.00 0.00 40.72 4.26
508 510 5.701750 TCATTTGCAATGAAAATGGGTTCAG 59.298 36.000 22.59 0.15 42.63 3.02
509 511 5.618236 TCATTTGCAATGAAAATGGGTTCA 58.382 33.333 22.59 4.26 42.63 3.18
510 512 6.372981 GTTCATTTGCAATGAAAATGGGTTC 58.627 36.000 22.59 9.89 42.63 3.62
511 513 5.049543 CGTTCATTTGCAATGAAAATGGGTT 60.050 36.000 22.59 0.00 42.63 4.11
512 514 4.451774 CGTTCATTTGCAATGAAAATGGGT 59.548 37.500 22.59 0.00 42.63 4.51
513 515 4.142859 CCGTTCATTTGCAATGAAAATGGG 60.143 41.667 22.59 14.15 42.63 4.00
514 516 4.689812 TCCGTTCATTTGCAATGAAAATGG 59.310 37.500 22.59 19.22 42.63 3.16
515 517 5.842619 TCCGTTCATTTGCAATGAAAATG 57.157 34.783 18.33 18.33 43.38 2.32
516 518 6.857777 TTTCCGTTCATTTGCAATGAAAAT 57.142 29.167 19.23 0.00 39.43 1.82
517 519 6.857777 ATTTCCGTTCATTTGCAATGAAAA 57.142 29.167 19.23 13.24 39.43 2.29
518 520 6.925718 TGTATTTCCGTTCATTTGCAATGAAA 59.074 30.769 19.23 11.80 39.43 2.69
519 521 6.450545 TGTATTTCCGTTCATTTGCAATGAA 58.549 32.000 15.74 15.74 35.86 2.57
520 522 6.018589 TGTATTTCCGTTCATTTGCAATGA 57.981 33.333 0.00 3.67 0.00 2.57
521 523 5.220265 GCTGTATTTCCGTTCATTTGCAATG 60.220 40.000 0.00 1.04 0.00 2.82
522 524 4.864247 GCTGTATTTCCGTTCATTTGCAAT 59.136 37.500 0.00 0.00 0.00 3.56
523 525 4.233789 GCTGTATTTCCGTTCATTTGCAA 58.766 39.130 0.00 0.00 0.00 4.08
524 526 3.254411 TGCTGTATTTCCGTTCATTTGCA 59.746 39.130 0.00 0.00 0.00 4.08
525 527 3.832276 TGCTGTATTTCCGTTCATTTGC 58.168 40.909 0.00 0.00 0.00 3.68
526 528 5.046910 ACTGCTGTATTTCCGTTCATTTG 57.953 39.130 0.00 0.00 0.00 2.32
527 529 5.705609 AACTGCTGTATTTCCGTTCATTT 57.294 34.783 0.00 0.00 0.00 2.32
528 530 5.473504 AGAAACTGCTGTATTTCCGTTCATT 59.526 36.000 0.00 0.00 35.77 2.57
529 531 5.003804 AGAAACTGCTGTATTTCCGTTCAT 58.996 37.500 0.00 0.00 35.77 2.57
530 532 4.385825 AGAAACTGCTGTATTTCCGTTCA 58.614 39.130 0.00 0.00 35.77 3.18
531 533 5.867716 TCTAGAAACTGCTGTATTTCCGTTC 59.132 40.000 0.00 0.00 35.77 3.95
532 534 5.790593 TCTAGAAACTGCTGTATTTCCGTT 58.209 37.500 0.00 0.00 35.77 4.44
533 535 5.401531 TCTAGAAACTGCTGTATTTCCGT 57.598 39.130 0.00 0.00 35.77 4.69
534 536 6.534934 GTTTCTAGAAACTGCTGTATTTCCG 58.465 40.000 32.01 0.00 45.26 4.30
548 550 5.849510 TCCTCGTGACAATGTTTCTAGAAA 58.150 37.500 13.99 13.99 0.00 2.52
549 551 5.462530 TCCTCGTGACAATGTTTCTAGAA 57.537 39.130 0.00 0.00 0.00 2.10
550 552 4.082190 CCTCCTCGTGACAATGTTTCTAGA 60.082 45.833 0.00 0.00 0.00 2.43
551 553 4.177026 CCTCCTCGTGACAATGTTTCTAG 58.823 47.826 0.00 0.00 0.00 2.43
552 554 3.056107 CCCTCCTCGTGACAATGTTTCTA 60.056 47.826 0.00 0.00 0.00 2.10
553 555 2.289694 CCCTCCTCGTGACAATGTTTCT 60.290 50.000 0.00 0.00 0.00 2.52
554 556 2.076863 CCCTCCTCGTGACAATGTTTC 58.923 52.381 0.00 0.00 0.00 2.78
555 557 1.697432 TCCCTCCTCGTGACAATGTTT 59.303 47.619 0.00 0.00 0.00 2.83
556 558 1.002087 GTCCCTCCTCGTGACAATGTT 59.998 52.381 0.00 0.00 0.00 2.71
557 559 0.608640 GTCCCTCCTCGTGACAATGT 59.391 55.000 0.00 0.00 0.00 2.71
558 560 0.608130 TGTCCCTCCTCGTGACAATG 59.392 55.000 0.00 0.00 36.16 2.82
559 561 1.482593 GATGTCCCTCCTCGTGACAAT 59.517 52.381 0.00 0.00 41.85 2.71
560 562 0.895530 GATGTCCCTCCTCGTGACAA 59.104 55.000 0.00 0.00 41.85 3.18
561 563 0.039764 AGATGTCCCTCCTCGTGACA 59.960 55.000 0.00 0.00 42.65 3.58
562 564 0.457851 CAGATGTCCCTCCTCGTGAC 59.542 60.000 0.00 0.00 0.00 3.67
563 565 0.331616 TCAGATGTCCCTCCTCGTGA 59.668 55.000 0.00 0.00 0.00 4.35
564 566 1.068281 CATCAGATGTCCCTCCTCGTG 59.932 57.143 1.74 0.00 0.00 4.35
565 567 1.407936 CATCAGATGTCCCTCCTCGT 58.592 55.000 1.74 0.00 0.00 4.18
566 568 0.033228 GCATCAGATGTCCCTCCTCG 59.967 60.000 12.18 0.00 0.00 4.63
567 569 1.126488 TGCATCAGATGTCCCTCCTC 58.874 55.000 12.18 0.00 0.00 3.71
568 570 1.489649 CTTGCATCAGATGTCCCTCCT 59.510 52.381 12.18 0.00 0.00 3.69
569 571 1.211457 ACTTGCATCAGATGTCCCTCC 59.789 52.381 12.18 0.00 0.00 4.30
570 572 2.706339 ACTTGCATCAGATGTCCCTC 57.294 50.000 12.18 0.00 0.00 4.30
571 573 3.110705 AGTACTTGCATCAGATGTCCCT 58.889 45.455 12.18 0.00 0.00 4.20
572 574 3.201290 CAGTACTTGCATCAGATGTCCC 58.799 50.000 12.18 0.00 0.00 4.46
573 575 3.866651 ACAGTACTTGCATCAGATGTCC 58.133 45.455 12.18 0.00 0.00 4.02
574 576 5.655488 ACTACAGTACTTGCATCAGATGTC 58.345 41.667 12.18 5.24 0.00 3.06
575 577 5.667539 ACTACAGTACTTGCATCAGATGT 57.332 39.130 12.18 0.00 0.00 3.06
576 578 6.800543 ACTACTACAGTACTTGCATCAGATG 58.199 40.000 5.98 5.98 34.98 2.90
577 579 8.698973 ATACTACTACAGTACTTGCATCAGAT 57.301 34.615 0.00 0.00 42.56 2.90
592 594 9.079833 GCAACGAAAGAACAATATACTACTACA 57.920 33.333 0.00 0.00 0.00 2.74
593 595 9.079833 TGCAACGAAAGAACAATATACTACTAC 57.920 33.333 0.00 0.00 0.00 2.73
599 601 7.372396 CGGTATTGCAACGAAAGAACAATATAC 59.628 37.037 0.00 0.00 36.69 1.47
623 710 1.520590 CAACGGAAATTGCACAAACGG 59.479 47.619 0.00 0.00 0.00 4.44
624 711 2.215363 GTCAACGGAAATTGCACAAACG 59.785 45.455 0.00 0.00 0.00 3.60
629 716 1.408422 GCAGTCAACGGAAATTGCAC 58.592 50.000 0.00 0.00 31.31 4.57
679 766 1.212490 TGCCAAATTAGCAGCGTGC 59.788 52.632 0.00 2.28 45.46 5.34
741 836 2.033424 GTCAACCCTCTCAAAGTGCAAC 59.967 50.000 0.00 0.00 0.00 4.17
814 910 0.740737 GTTGACTTGCCAACTGCTGT 59.259 50.000 0.00 0.00 42.20 4.40
906 1003 2.026879 GCTCTGAGATCGCCGGAC 59.973 66.667 5.05 0.00 0.00 4.79
926 1023 3.645212 TCTTCAGATAGATGGAAGCAGGG 59.355 47.826 0.00 0.00 38.29 4.45
966 1063 3.430236 GCTGCTTCTTCTCTTCTCCCTAC 60.430 52.174 0.00 0.00 0.00 3.18
975 1080 0.174617 GCTACCGCTGCTTCTTCTCT 59.825 55.000 0.00 0.00 0.00 3.10
1036 1141 1.930908 GCTTTGCGCTTGCTCCATCT 61.931 55.000 9.73 0.00 40.12 2.90
1053 1158 2.680352 AGGTGGATGACGACGGCT 60.680 61.111 0.65 0.00 0.00 5.52
1063 1168 4.148825 GCAGACGGCGAGGTGGAT 62.149 66.667 16.62 0.00 0.00 3.41
1202 1307 2.764128 GGAGGCCGATGTCAGGGA 60.764 66.667 0.00 0.00 0.00 4.20
1314 1419 1.054406 CCACGATCCATACCAGGGGT 61.054 60.000 0.00 0.00 40.16 4.95
1317 1422 1.475034 CCAACCACGATCCATACCAGG 60.475 57.143 0.00 0.00 0.00 4.45
1318 1423 1.209504 ACCAACCACGATCCATACCAG 59.790 52.381 0.00 0.00 0.00 4.00
1321 1426 1.014352 GCACCAACCACGATCCATAC 58.986 55.000 0.00 0.00 0.00 2.39
1378 1483 2.742372 GAACATGACGCCGGTGCT 60.742 61.111 16.69 1.79 34.43 4.40
1407 1512 2.486548 GGTGGTGATATTGGTGGCGTAT 60.487 50.000 0.00 0.00 0.00 3.06
1419 1542 1.079681 GTTCACGGCGGTGGTGATA 60.080 57.895 22.51 1.73 43.37 2.15
1475 1598 4.659874 CGTTGTTCACGGCGGTGC 62.660 66.667 18.84 7.24 45.89 5.01
1492 1615 1.747325 ATGGTGCTGTTGTTGGTGGC 61.747 55.000 0.00 0.00 0.00 5.01
1581 2461 2.258286 GTGGCATTGTTCACGGCC 59.742 61.111 0.00 0.00 46.58 6.13
1593 2473 2.832661 GTGCTGTTGGTGGTGGCA 60.833 61.111 0.00 0.00 0.00 4.92
1594 2474 3.605664 GGTGCTGTTGGTGGTGGC 61.606 66.667 0.00 0.00 0.00 5.01
1607 2526 3.818787 CGCTGGCTTCCATGGTGC 61.819 66.667 12.58 16.73 30.82 5.01
1612 2531 3.064324 GTTGGCGCTGGCTTCCAT 61.064 61.111 7.64 0.00 39.81 3.41
1628 2547 3.206246 CGGCGGTGGTTGTGTTGT 61.206 61.111 0.00 0.00 0.00 3.32
1674 2593 2.014554 CACGGTGGTGTTCTCGACG 61.015 63.158 0.00 0.00 39.38 5.12
1755 2689 1.890876 CATTCCCGGTGTTGTTCTCA 58.109 50.000 0.00 0.00 0.00 3.27
1795 2735 1.621301 CTCAGCGCCACGTTCTTCTG 61.621 60.000 2.29 0.00 0.00 3.02
1857 2797 1.371183 GTATATGGCAGAGGCGGCA 59.629 57.895 13.08 0.00 46.50 5.69
1918 2858 2.483491 CTGCAAGAGAAGGAAGAAGCAC 59.517 50.000 0.00 0.00 34.07 4.40
1971 2911 2.949644 GTTGCTCCTGTGTTGGTACTTT 59.050 45.455 0.00 0.00 0.00 2.66
1972 2912 2.092646 TGTTGCTCCTGTGTTGGTACTT 60.093 45.455 0.00 0.00 0.00 2.24
1973 2913 1.488812 TGTTGCTCCTGTGTTGGTACT 59.511 47.619 0.00 0.00 0.00 2.73
1974 2914 1.961793 TGTTGCTCCTGTGTTGGTAC 58.038 50.000 0.00 0.00 0.00 3.34
1985 2928 6.494893 TGAGTGTTGTTATTATGTTGCTCC 57.505 37.500 0.00 0.00 0.00 4.70
2047 2990 0.165295 CTGCTGATGACACAGTTGCG 59.835 55.000 0.00 0.00 39.73 4.85
2073 3016 4.062991 GGTTGGTCCTTGTAGTGTTACTG 58.937 47.826 0.00 0.00 0.00 2.74
2155 3098 1.339055 ACCGCATCTGCTGTATGTGTT 60.339 47.619 0.09 0.97 36.73 3.32
2175 3118 1.167851 GCCTGTATCTTGTGCAGCAA 58.832 50.000 0.00 0.00 39.01 3.91
2197 3140 0.957395 AACTGGAGCTGTTGCGGATG 60.957 55.000 0.00 0.00 45.42 3.51
2260 3203 4.785301 ACCATTCTGATTCCCACAGTATG 58.215 43.478 0.00 0.00 40.36 2.39
2270 3213 1.327764 GTCGGCGAACCATTCTGATTC 59.672 52.381 12.92 0.00 34.57 2.52
2271 3214 1.338674 TGTCGGCGAACCATTCTGATT 60.339 47.619 12.92 0.00 34.57 2.57
2272 3215 0.249120 TGTCGGCGAACCATTCTGAT 59.751 50.000 12.92 0.00 34.57 2.90
2273 3216 0.389817 CTGTCGGCGAACCATTCTGA 60.390 55.000 12.92 0.00 34.57 3.27
2274 3217 1.970917 GCTGTCGGCGAACCATTCTG 61.971 60.000 12.92 3.14 34.57 3.02
2275 3218 1.741770 GCTGTCGGCGAACCATTCT 60.742 57.895 12.92 0.00 34.57 2.40
2298 3247 3.731653 GAGCCGCCTCCTGAAGAGC 62.732 68.421 0.00 0.00 41.74 4.09
2396 3345 3.206150 GCCACATCATTATCCGTGACTT 58.794 45.455 0.00 0.00 0.00 3.01
2435 3384 6.325545 TCCTGTTCTTTAACTTCTGGAGTGTA 59.674 38.462 0.00 0.00 39.00 2.90
2450 3399 0.038159 CGCGGAGTCTCCTGTTCTTT 60.038 55.000 17.00 0.00 33.30 2.52
2467 3416 1.017387 CCAATAGACTTTGCTCCCGC 58.983 55.000 0.00 0.00 0.00 6.13
3069 4019 9.743057 CCAGTTACTTGTGATTCAACAATTTTA 57.257 29.630 0.00 0.00 39.25 1.52
3261 4211 9.649316 CCCTTTGGGTCTTTTTATTGGTATATA 57.351 33.333 0.00 0.00 38.25 0.86
3262 4212 8.547481 CCCTTTGGGTCTTTTTATTGGTATAT 57.453 34.615 0.00 0.00 38.25 0.86
3263 4213 7.964666 CCCTTTGGGTCTTTTTATTGGTATA 57.035 36.000 0.00 0.00 38.25 1.47
3264 4214 6.867519 CCCTTTGGGTCTTTTTATTGGTAT 57.132 37.500 0.00 0.00 38.25 2.73
3280 4230 1.315257 CGTTGGATCTGCCCCTTTGG 61.315 60.000 0.00 0.00 34.97 3.28
3281 4231 0.322456 TCGTTGGATCTGCCCCTTTG 60.322 55.000 0.00 0.00 34.97 2.77
3282 4232 0.404040 TTCGTTGGATCTGCCCCTTT 59.596 50.000 0.00 0.00 34.97 3.11
3283 4233 0.625849 ATTCGTTGGATCTGCCCCTT 59.374 50.000 0.00 0.00 34.97 3.95
3284 4234 0.181350 GATTCGTTGGATCTGCCCCT 59.819 55.000 0.00 0.00 34.97 4.79
3285 4235 0.819666 GGATTCGTTGGATCTGCCCC 60.820 60.000 0.00 0.00 34.97 5.80
3286 4236 0.819666 GGGATTCGTTGGATCTGCCC 60.820 60.000 0.00 0.00 34.97 5.36
3287 4237 1.160329 CGGGATTCGTTGGATCTGCC 61.160 60.000 0.00 0.00 37.10 4.85
3288 4238 1.160329 CCGGGATTCGTTGGATCTGC 61.160 60.000 0.00 0.00 37.11 4.26
3289 4239 1.160329 GCCGGGATTCGTTGGATCTG 61.160 60.000 2.18 0.00 37.11 2.90
3290 4240 1.146263 GCCGGGATTCGTTGGATCT 59.854 57.895 2.18 0.00 37.11 2.75
3291 4241 1.892391 GGCCGGGATTCGTTGGATC 60.892 63.158 2.18 0.00 37.11 3.36
3292 4242 2.192175 GGCCGGGATTCGTTGGAT 59.808 61.111 2.18 0.00 37.11 3.41
3293 4243 4.460683 CGGCCGGGATTCGTTGGA 62.461 66.667 20.10 0.00 37.11 3.53
3294 4244 4.770874 ACGGCCGGGATTCGTTGG 62.771 66.667 31.76 0.00 37.11 3.77
3295 4245 3.192922 GACGGCCGGGATTCGTTG 61.193 66.667 31.76 0.00 37.25 4.10
3296 4246 2.734948 TTTGACGGCCGGGATTCGTT 62.735 55.000 31.76 4.91 37.25 3.85
3297 4247 2.530958 ATTTGACGGCCGGGATTCGT 62.531 55.000 31.76 5.85 39.99 3.85
3298 4248 1.772063 GATTTGACGGCCGGGATTCG 61.772 60.000 31.76 1.69 38.88 3.34
3299 4249 0.746563 TGATTTGACGGCCGGGATTC 60.747 55.000 31.76 18.48 0.00 2.52
3300 4250 0.748005 CTGATTTGACGGCCGGGATT 60.748 55.000 31.76 8.20 0.00 3.01
3301 4251 1.153168 CTGATTTGACGGCCGGGAT 60.153 57.895 31.76 16.88 0.00 3.85
3302 4252 2.267642 CTGATTTGACGGCCGGGA 59.732 61.111 31.76 12.83 0.00 5.14
3303 4253 2.824041 CCTGATTTGACGGCCGGG 60.824 66.667 31.76 14.60 0.00 5.73
3304 4254 2.046314 ACCTGATTTGACGGCCGG 60.046 61.111 31.76 11.88 0.00 6.13
3305 4255 0.953471 TTGACCTGATTTGACGGCCG 60.953 55.000 26.86 26.86 0.00 6.13
3306 4256 1.401905 GATTGACCTGATTTGACGGCC 59.598 52.381 0.00 0.00 0.00 6.13
3307 4257 1.401905 GGATTGACCTGATTTGACGGC 59.598 52.381 0.00 0.00 35.41 5.68
3308 4258 2.710377 TGGATTGACCTGATTTGACGG 58.290 47.619 0.00 0.00 39.86 4.79
3309 4259 3.424829 CGTTGGATTGACCTGATTTGACG 60.425 47.826 0.00 0.00 39.86 4.35
3310 4260 3.751175 TCGTTGGATTGACCTGATTTGAC 59.249 43.478 0.00 0.00 39.86 3.18
3311 4261 3.751175 GTCGTTGGATTGACCTGATTTGA 59.249 43.478 0.00 0.00 39.86 2.69
3312 4262 3.753272 AGTCGTTGGATTGACCTGATTTG 59.247 43.478 0.00 0.00 39.86 2.32
3313 4263 4.003648 GAGTCGTTGGATTGACCTGATTT 58.996 43.478 0.00 0.00 39.86 2.17
3314 4264 3.007940 TGAGTCGTTGGATTGACCTGATT 59.992 43.478 0.00 0.00 39.86 2.57
3315 4265 2.567169 TGAGTCGTTGGATTGACCTGAT 59.433 45.455 0.00 0.00 39.86 2.90
3316 4266 1.967779 TGAGTCGTTGGATTGACCTGA 59.032 47.619 0.00 0.00 39.86 3.86
3317 4267 2.341257 CTGAGTCGTTGGATTGACCTG 58.659 52.381 0.00 0.00 39.86 4.00
3318 4268 1.276421 CCTGAGTCGTTGGATTGACCT 59.724 52.381 0.00 0.00 39.86 3.85
3319 4269 1.726853 CCTGAGTCGTTGGATTGACC 58.273 55.000 0.00 0.00 35.71 4.02
3320 4270 1.079503 GCCTGAGTCGTTGGATTGAC 58.920 55.000 1.44 0.00 35.33 3.18
3321 4271 0.976641 AGCCTGAGTCGTTGGATTGA 59.023 50.000 1.44 0.00 0.00 2.57
3322 4272 1.081892 CAGCCTGAGTCGTTGGATTG 58.918 55.000 0.00 0.00 0.00 2.67
3323 4273 0.674895 GCAGCCTGAGTCGTTGGATT 60.675 55.000 0.00 0.00 0.00 3.01
3324 4274 1.078848 GCAGCCTGAGTCGTTGGAT 60.079 57.895 0.00 0.00 0.00 3.41
3325 4275 2.159819 GAGCAGCCTGAGTCGTTGGA 62.160 60.000 0.00 0.00 0.00 3.53
3326 4276 1.739562 GAGCAGCCTGAGTCGTTGG 60.740 63.158 0.00 0.00 0.00 3.77
3327 4277 1.739562 GGAGCAGCCTGAGTCGTTG 60.740 63.158 0.00 0.00 0.00 4.10
3328 4278 1.758440 TTGGAGCAGCCTGAGTCGTT 61.758 55.000 0.00 0.00 37.63 3.85
3329 4279 1.548357 ATTGGAGCAGCCTGAGTCGT 61.548 55.000 0.00 0.00 37.63 4.34
3330 4280 1.088340 CATTGGAGCAGCCTGAGTCG 61.088 60.000 0.00 0.00 37.63 4.18
3331 4281 0.747283 CCATTGGAGCAGCCTGAGTC 60.747 60.000 0.00 0.00 37.63 3.36
3332 4282 1.302285 CCATTGGAGCAGCCTGAGT 59.698 57.895 0.00 0.00 37.63 3.41
3333 4283 1.030488 CACCATTGGAGCAGCCTGAG 61.030 60.000 10.37 0.00 37.63 3.35
3334 4284 1.001764 CACCATTGGAGCAGCCTGA 60.002 57.895 10.37 0.00 37.63 3.86
3335 4285 1.001764 TCACCATTGGAGCAGCCTG 60.002 57.895 10.37 0.00 37.63 4.85
3336 4286 1.302285 CTCACCATTGGAGCAGCCT 59.698 57.895 10.37 0.00 37.63 4.58
3337 4287 3.915575 CTCACCATTGGAGCAGCC 58.084 61.111 10.37 0.00 37.10 4.85
3342 4292 0.674581 TTGAGCGCTCACCATTGGAG 60.675 55.000 38.36 0.83 39.66 3.86
3343 4293 0.955428 GTTGAGCGCTCACCATTGGA 60.955 55.000 38.36 20.24 39.66 3.53
3344 4294 1.236616 TGTTGAGCGCTCACCATTGG 61.237 55.000 38.36 0.00 39.66 3.16
3345 4295 0.110056 GTGTTGAGCGCTCACCATTG 60.110 55.000 35.40 0.00 39.66 2.82
3346 4296 1.568612 CGTGTTGAGCGCTCACCATT 61.569 55.000 35.40 1.02 39.66 3.16
3347 4297 2.029288 CGTGTTGAGCGCTCACCAT 61.029 57.895 35.40 1.89 39.66 3.55
3348 4298 2.661537 CGTGTTGAGCGCTCACCA 60.662 61.111 38.36 34.47 39.66 4.17
3349 4299 1.772063 AAACGTGTTGAGCGCTCACC 61.772 55.000 38.36 32.16 39.66 4.02
3350 4300 0.856641 TAAACGTGTTGAGCGCTCAC 59.143 50.000 38.36 29.97 39.66 3.51
3351 4301 1.136690 CTAAACGTGTTGAGCGCTCA 58.863 50.000 35.30 35.30 37.91 4.26
3352 4302 1.136611 CACTAAACGTGTTGAGCGCTC 60.137 52.381 30.42 30.42 38.84 5.03
3353 4303 0.859232 CACTAAACGTGTTGAGCGCT 59.141 50.000 11.27 11.27 38.84 5.92
3354 4304 3.345087 CACTAAACGTGTTGAGCGC 57.655 52.632 0.00 0.00 38.84 5.92
3363 4313 7.843490 ATGATATTAACTGCACACTAAACGT 57.157 32.000 0.00 0.00 0.00 3.99
3364 4314 8.273557 GGTATGATATTAACTGCACACTAAACG 58.726 37.037 0.00 0.00 0.00 3.60
3365 4315 9.104965 TGGTATGATATTAACTGCACACTAAAC 57.895 33.333 0.00 0.00 0.00 2.01
3366 4316 9.674068 TTGGTATGATATTAACTGCACACTAAA 57.326 29.630 0.00 0.00 0.00 1.85
3367 4317 9.674068 TTTGGTATGATATTAACTGCACACTAA 57.326 29.630 0.00 0.00 0.00 2.24
3368 4318 9.845740 ATTTGGTATGATATTAACTGCACACTA 57.154 29.630 0.00 0.00 0.00 2.74
3369 4319 8.752005 ATTTGGTATGATATTAACTGCACACT 57.248 30.769 0.00 0.00 0.00 3.55
3383 4333 8.818860 AGCATTGGCATTAATATTTGGTATGAT 58.181 29.630 0.00 0.00 44.61 2.45
3384 4334 8.192743 AGCATTGGCATTAATATTTGGTATGA 57.807 30.769 0.00 0.00 44.61 2.15
3385 4335 9.926158 TTAGCATTGGCATTAATATTTGGTATG 57.074 29.630 0.00 0.00 44.61 2.39
3388 4338 8.649591 TGATTAGCATTGGCATTAATATTTGGT 58.350 29.630 0.00 0.00 44.61 3.67
3389 4339 8.928733 GTGATTAGCATTGGCATTAATATTTGG 58.071 33.333 0.00 0.00 44.61 3.28
3390 4340 9.478768 TGTGATTAGCATTGGCATTAATATTTG 57.521 29.630 0.00 0.00 44.61 2.32
3394 4344 9.519191 AGTATGTGATTAGCATTGGCATTAATA 57.481 29.630 0.00 0.00 44.61 0.98
3395 4345 8.413309 AGTATGTGATTAGCATTGGCATTAAT 57.587 30.769 0.00 0.00 44.61 1.40
3396 4346 7.822161 AGTATGTGATTAGCATTGGCATTAA 57.178 32.000 0.00 0.00 44.61 1.40
3397 4347 7.822161 AAGTATGTGATTAGCATTGGCATTA 57.178 32.000 0.00 0.00 44.61 1.90
3398 4348 6.720112 AAGTATGTGATTAGCATTGGCATT 57.280 33.333 0.00 0.00 44.61 3.56
3399 4349 7.822161 TTAAGTATGTGATTAGCATTGGCAT 57.178 32.000 0.00 0.00 44.61 4.40
3400 4350 7.822161 ATTAAGTATGTGATTAGCATTGGCA 57.178 32.000 0.00 0.00 44.61 4.92
3401 4351 9.778993 CATATTAAGTATGTGATTAGCATTGGC 57.221 33.333 0.00 0.00 36.28 4.52
3402 4352 9.778993 GCATATTAAGTATGTGATTAGCATTGG 57.221 33.333 0.00 0.00 41.86 3.16
3465 4415 7.594758 GCAATGCACGTTGATATTTGGTAATAT 59.405 33.333 0.00 0.00 39.17 1.28
3466 4416 6.915300 GCAATGCACGTTGATATTTGGTAATA 59.085 34.615 0.00 0.00 0.00 0.98
3467 4417 5.748152 GCAATGCACGTTGATATTTGGTAAT 59.252 36.000 0.00 0.00 0.00 1.89
3468 4418 5.098893 GCAATGCACGTTGATATTTGGTAA 58.901 37.500 0.00 0.00 0.00 2.85
3469 4419 4.156739 TGCAATGCACGTTGATATTTGGTA 59.843 37.500 2.72 0.00 31.71 3.25
3470 4420 3.056962 TGCAATGCACGTTGATATTTGGT 60.057 39.130 2.72 0.00 31.71 3.67
3471 4421 3.509740 TGCAATGCACGTTGATATTTGG 58.490 40.909 2.72 0.00 31.71 3.28
3484 4434 3.500299 AGTAAATGTGTACGTGCAATGCA 59.500 39.130 8.25 2.72 35.60 3.96
3485 4435 4.078363 AGTAAATGTGTACGTGCAATGC 57.922 40.909 8.25 0.00 0.00 3.56
3486 4436 6.403333 ACTAGTAAATGTGTACGTGCAATG 57.597 37.500 8.25 0.00 0.00 2.82
3487 4437 7.816031 ACTTACTAGTAAATGTGTACGTGCAAT 59.184 33.333 15.95 1.77 31.21 3.56
3488 4438 7.147312 ACTTACTAGTAAATGTGTACGTGCAA 58.853 34.615 15.95 0.00 31.21 4.08
3489 4439 6.680810 ACTTACTAGTAAATGTGTACGTGCA 58.319 36.000 15.95 0.82 31.21 4.57
3490 4440 8.097514 GTACTTACTAGTAAATGTGTACGTGC 57.902 38.462 19.13 11.10 38.55 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.