Multiple sequence alignment - TraesCS3B01G151700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G151700 chr3B 100.000 3151 0 0 1 3151 143508695 143511845 0.000000e+00 5819.0
1 TraesCS3B01G151700 chr3B 86.851 905 90 18 1256 2153 143604258 143605140 0.000000e+00 985.0
2 TraesCS3B01G151700 chr3B 84.633 872 112 16 1284 2151 143953422 143954275 0.000000e+00 848.0
3 TraesCS3B01G151700 chr3B 82.720 897 121 20 340 1209 143603183 143604072 0.000000e+00 767.0
4 TraesCS3B01G151700 chr3B 85.926 675 84 10 1484 2155 143568175 143568841 0.000000e+00 710.0
5 TraesCS3B01G151700 chr3B 78.889 900 144 27 1282 2163 66470740 66469869 4.560000e-158 568.0
6 TraesCS3B01G151700 chr3B 74.759 1244 223 57 973 2159 66478877 66477668 1.020000e-129 473.0
7 TraesCS3B01G151700 chr3B 85.294 442 56 8 775 1209 143952768 143953207 6.200000e-122 448.0
8 TraesCS3B01G151700 chr3B 82.726 521 63 15 2476 2995 143557614 143557120 3.730000e-119 438.0
9 TraesCS3B01G151700 chr3B 92.000 50 3 1 2350 2399 143566830 143566782 5.640000e-08 69.4
10 TraesCS3B01G151700 chr3D 92.699 3164 161 29 1 3151 92897335 92894229 0.000000e+00 4499.0
11 TraesCS3B01G151700 chr3D 82.832 897 123 22 343 1215 92814924 92814035 0.000000e+00 774.0
12 TraesCS3B01G151700 chr3D 86.880 686 73 13 1471 2155 92813682 92813013 0.000000e+00 752.0
13 TraesCS3B01G151700 chr3D 79.751 884 151 20 1282 2161 42679840 42678981 1.610000e-172 616.0
14 TraesCS3B01G151700 chr3A 93.779 2347 126 15 1 2337 547181079 547183415 0.000000e+00 3507.0
15 TraesCS3B01G151700 chr3A 79.866 894 141 26 1282 2163 54232869 54232003 4.470000e-173 617.0
16 TraesCS3B01G151700 chr7D 85.455 165 11 2 2996 3148 23098664 23098827 3.250000e-35 159.0
17 TraesCS3B01G151700 chr5A 87.952 83 9 1 2995 3076 18502998 18502916 2.590000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G151700 chr3B 143508695 143511845 3150 False 5819 5819 100.0000 1 3151 1 chr3B.!!$F1 3150
1 TraesCS3B01G151700 chr3B 143603183 143605140 1957 False 876 985 84.7855 340 2153 2 chr3B.!!$F3 1813
2 TraesCS3B01G151700 chr3B 143568175 143568841 666 False 710 710 85.9260 1484 2155 1 chr3B.!!$F2 671
3 TraesCS3B01G151700 chr3B 143952768 143954275 1507 False 648 848 84.9635 775 2151 2 chr3B.!!$F4 1376
4 TraesCS3B01G151700 chr3B 66469869 66470740 871 True 568 568 78.8890 1282 2163 1 chr3B.!!$R1 881
5 TraesCS3B01G151700 chr3B 66477668 66478877 1209 True 473 473 74.7590 973 2159 1 chr3B.!!$R2 1186
6 TraesCS3B01G151700 chr3D 92894229 92897335 3106 True 4499 4499 92.6990 1 3151 1 chr3D.!!$R2 3150
7 TraesCS3B01G151700 chr3D 92813013 92814924 1911 True 763 774 84.8560 343 2155 2 chr3D.!!$R3 1812
8 TraesCS3B01G151700 chr3D 42678981 42679840 859 True 616 616 79.7510 1282 2161 1 chr3D.!!$R1 879
9 TraesCS3B01G151700 chr3A 547181079 547183415 2336 False 3507 3507 93.7790 1 2337 1 chr3A.!!$F1 2336
10 TraesCS3B01G151700 chr3A 54232003 54232869 866 True 617 617 79.8660 1282 2163 1 chr3A.!!$R1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 968 1.800805 ATGTTGAAGCGGTGTCAGAG 58.199 50.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2764 2999 0.324738 TGCGGGAGAAGATGGAGTCT 60.325 55.0 0.0 0.0 39.43 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
193 198 4.091365 TCAAAGATGTAATTCGACGTGCAG 59.909 41.667 0.00 0.00 0.00 4.41
209 214 2.064628 CAGCGGGAGATGGGATCAT 58.935 57.895 0.00 0.00 43.79 2.45
268 273 5.835819 TGGGGATAAAATCAAATCGGCATTA 59.164 36.000 0.00 0.00 0.00 1.90
270 275 7.016072 TGGGGATAAAATCAAATCGGCATTAAT 59.984 33.333 0.00 0.00 0.00 1.40
398 405 3.389983 AGCCCGCTGACCTAATAAATGTA 59.610 43.478 0.00 0.00 0.00 2.29
403 410 5.575606 CCGCTGACCTAATAAATGTATACGG 59.424 44.000 0.00 0.00 0.00 4.02
457 478 9.875691 TTTGAATGGAGATGATAGGTATTATCG 57.124 33.333 0.00 0.00 40.95 2.92
465 486 7.189794 AGATGATAGGTATTATCGGAAAGGGA 58.810 38.462 0.00 0.00 40.95 4.20
467 488 5.720041 TGATAGGTATTATCGGAAAGGGAGG 59.280 44.000 0.00 0.00 40.95 4.30
484 505 4.165758 AGGGAGGAGAATGAATTCTTCCAG 59.834 45.833 18.82 0.00 46.47 3.86
515 536 6.969473 GGTATTTCAAGCTAAGACTGAAATGC 59.031 38.462 24.06 22.63 38.92 3.56
522 543 8.796475 TCAAGCTAAGACTGAAATGCTAATTTT 58.204 29.630 0.00 0.00 36.10 1.82
603 627 3.764972 TGGGAATAATTTCGGTTCCAACC 59.235 43.478 5.81 0.00 42.49 3.77
622 646 5.392380 CCAACCTCATACAAGAGCAATTCAC 60.392 44.000 0.00 0.00 34.26 3.18
624 648 5.503927 ACCTCATACAAGAGCAATTCACAT 58.496 37.500 0.00 0.00 34.26 3.21
929 959 5.991328 ATGTGGTCTAATATGTTGAAGCG 57.009 39.130 0.00 0.00 0.00 4.68
938 968 1.800805 ATGTTGAAGCGGTGTCAGAG 58.199 50.000 0.00 0.00 0.00 3.35
1052 1086 0.174617 CTCGTCCTCCTCCTCTTTGC 59.825 60.000 0.00 0.00 0.00 3.68
1191 1225 6.479972 AGAAACTCCGGTACATATCATCAA 57.520 37.500 0.00 0.00 0.00 2.57
1209 1341 7.949903 TCATCAATTTTTGCACCATATATGC 57.050 32.000 7.24 4.52 43.68 3.14
1238 1410 7.995463 TTACACACTTTTTGCTAAATTGACC 57.005 32.000 8.91 0.00 0.00 4.02
1251 1423 8.006298 TGCTAAATTGACCCGAATTGAATAAT 57.994 30.769 0.00 0.00 0.00 1.28
1418 1616 5.825151 TGTTGACACATCTTGTATGTTCCAA 59.175 36.000 0.00 0.00 39.17 3.53
1426 1624 5.621197 TCTTGTATGTTCCAACCATTTCG 57.379 39.130 0.00 0.00 0.00 3.46
1734 1951 3.815962 CCATCTGCTCAGAAGATCAATGG 59.184 47.826 3.47 1.87 41.36 3.16
1811 2043 0.690762 GGGTGCTGAAGAACCTACCA 59.309 55.000 7.43 0.00 43.60 3.25
1819 2051 1.774894 AAGAACCTACCAGGCCGCAA 61.775 55.000 0.00 0.00 39.63 4.85
2025 2257 1.283613 ACCTGTGGTGGAACAAGTTCA 59.716 47.619 14.25 0.00 44.16 3.18
2027 2259 2.643551 CTGTGGTGGAACAAGTTCAGT 58.356 47.619 14.25 0.00 44.16 3.41
2138 2370 0.629596 TCCATCTACCGGGAGAGTGT 59.370 55.000 23.61 1.69 0.00 3.55
2402 2634 8.034313 ACTGTATACATAAGGGTTCACATCAT 57.966 34.615 5.91 0.00 0.00 2.45
2417 2649 8.426489 GGTTCACATCATACCCACTTATACTTA 58.574 37.037 0.00 0.00 0.00 2.24
2421 2653 8.307483 CACATCATACCCACTTATACTTAGGAG 58.693 40.741 0.00 0.00 0.00 3.69
2448 2680 6.877668 TTAATTACATACAGTGTGAGGGGA 57.122 37.500 5.88 0.00 42.24 4.81
2469 2701 3.229697 AGAAATACTTAGCCATGGCCC 57.770 47.619 33.14 7.24 43.17 5.80
2470 2702 2.513738 AGAAATACTTAGCCATGGCCCA 59.486 45.455 33.14 18.86 43.17 5.36
2471 2703 3.140895 AGAAATACTTAGCCATGGCCCAT 59.859 43.478 33.14 17.69 43.17 4.00
2487 2719 1.750206 CCCATCATCATCGCACCAAAA 59.250 47.619 0.00 0.00 0.00 2.44
2498 2730 3.715495 TCGCACCAAAACTAGTTAACGA 58.285 40.909 8.92 9.08 0.00 3.85
2545 2780 5.009210 CCCGACTGACAAAATAAACAAGGAA 59.991 40.000 0.00 0.00 0.00 3.36
2560 2795 4.808042 ACAAGGAATGGGGGATATCTTTG 58.192 43.478 2.05 0.00 35.67 2.77
2610 2845 2.373269 CGTAGTAACGCATTCTCTCCG 58.627 52.381 0.00 0.00 43.12 4.63
2630 2865 2.190578 GCGCTTAGTGGGGAGCAT 59.809 61.111 0.00 0.00 38.81 3.79
2640 2875 2.427320 GGGAGCATGGCATCGCTA 59.573 61.111 19.55 0.00 38.99 4.26
2641 2876 1.002868 GGGAGCATGGCATCGCTAT 60.003 57.895 19.55 4.49 38.99 2.97
2643 2878 1.303799 GGAGCATGGCATCGCTATGG 61.304 60.000 19.55 0.13 45.46 2.74
2669 2904 1.376037 GAGGGACTGGCCGAACTTG 60.376 63.158 0.00 0.00 41.55 3.16
2694 2929 0.250901 ACACAAGGTGAGACATGGCC 60.251 55.000 0.00 0.00 36.96 5.36
2695 2930 0.962356 CACAAGGTGAGACATGGCCC 60.962 60.000 0.00 0.00 35.23 5.80
2722 2957 4.154347 CTCTGGACGGGCTGGCTC 62.154 72.222 0.00 0.00 0.00 4.70
2738 2973 2.159099 TGGCTCGATCTCAACGCTTATT 60.159 45.455 0.00 0.00 0.00 1.40
2753 2988 4.244862 CGCTTATTTCCATTTGTTGGCTT 58.755 39.130 0.00 0.00 46.01 4.35
2769 3004 1.016653 GCTTTGCCGGTGAGAGACTC 61.017 60.000 1.90 0.00 0.00 3.36
2790 3025 1.684386 ATCTTCTCCCGCAGCCTCTG 61.684 60.000 0.00 0.00 34.12 3.35
2796 3031 2.132996 CCCGCAGCCTCTGAGAGAT 61.133 63.158 11.82 0.00 33.20 2.75
2806 3041 0.532573 TCTGAGAGATGAACACGCCC 59.467 55.000 0.00 0.00 0.00 6.13
2807 3042 0.534412 CTGAGAGATGAACACGCCCT 59.466 55.000 0.00 0.00 0.00 5.19
2808 3043 0.247460 TGAGAGATGAACACGCCCTG 59.753 55.000 0.00 0.00 0.00 4.45
2827 3062 4.115516 CCTGATGATTAGACAAGGACACG 58.884 47.826 0.00 0.00 0.00 4.49
2830 3065 4.219725 TGATGATTAGACAAGGACACGTCA 59.780 41.667 0.00 0.00 34.48 4.35
2863 3098 2.048222 CGCCTCTCCACGCAGAAA 60.048 61.111 0.00 0.00 0.00 2.52
2891 3126 3.420206 TTGCCCCCATCCGATGCTC 62.420 63.158 2.53 0.00 0.00 4.26
2924 3159 1.076533 CGTCGCTGGCTTCGTTGTAT 61.077 55.000 0.00 0.00 0.00 2.29
2925 3160 1.076332 GTCGCTGGCTTCGTTGTATT 58.924 50.000 0.00 0.00 0.00 1.89
2926 3161 1.075542 TCGCTGGCTTCGTTGTATTG 58.924 50.000 0.00 0.00 0.00 1.90
2927 3162 0.796312 CGCTGGCTTCGTTGTATTGT 59.204 50.000 0.00 0.00 0.00 2.71
2928 3163 1.996898 CGCTGGCTTCGTTGTATTGTA 59.003 47.619 0.00 0.00 0.00 2.41
2944 3179 5.704978 TGTATTGTACTAGTACACGACCACA 59.295 40.000 30.76 24.21 44.81 4.17
2978 3213 1.140407 GCAGACTCGTCGTATGTGCC 61.140 60.000 8.67 0.00 37.18 5.01
3062 3297 4.394712 CCTGGTGCGGTCTGGGTC 62.395 72.222 0.00 0.00 0.00 4.46
3063 3298 4.742201 CTGGTGCGGTCTGGGTCG 62.742 72.222 0.00 0.00 0.00 4.79
3066 3301 4.736896 GTGCGGTCTGGGTCGGAC 62.737 72.222 0.00 0.00 40.12 4.79
3068 3303 4.736896 GCGGTCTGGGTCGGACAC 62.737 72.222 10.76 7.01 41.15 3.67
3069 3304 4.415332 CGGTCTGGGTCGGACACG 62.415 72.222 10.76 3.29 41.15 4.49
3070 3305 4.065281 GGTCTGGGTCGGACACGG 62.065 72.222 13.13 13.13 41.15 4.94
3071 3306 4.065281 GTCTGGGTCGGACACGGG 62.065 72.222 18.69 7.98 39.36 5.28
3072 3307 4.608774 TCTGGGTCGGACACGGGT 62.609 66.667 18.69 0.00 41.39 5.28
3073 3308 4.373116 CTGGGTCGGACACGGGTG 62.373 72.222 11.49 0.00 41.39 4.61
3089 3324 3.261216 TGCGTGTGTGTGTCAGCG 61.261 61.111 0.00 0.00 0.00 5.18
3106 3341 0.659123 GCGCGTGTGTGGGTTTTTAG 60.659 55.000 8.43 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.490439 TCTCCACAACTTGCAAGATCA 57.510 42.857 32.50 8.92 0.00 2.92
128 133 1.073098 ACGGAAAAGGGAGGGTGATT 58.927 50.000 0.00 0.00 0.00 2.57
171 176 4.320667 TGCACGTCGAATTACATCTTTG 57.679 40.909 0.00 0.00 0.00 2.77
173 178 2.348666 GCTGCACGTCGAATTACATCTT 59.651 45.455 0.00 0.00 0.00 2.40
209 214 8.265055 AGTTAGTTCATCTCCCGATTTAAATGA 58.735 33.333 5.17 0.00 0.00 2.57
331 338 8.757982 ACCATGATTAATAAGTGCAAGAGATT 57.242 30.769 0.00 0.00 0.00 2.40
338 345 5.387113 AGGGACCATGATTAATAAGTGCA 57.613 39.130 0.00 0.00 0.00 4.57
398 405 9.018582 GTTAGAAATATACTACACCCTCCGTAT 57.981 37.037 0.00 0.00 0.00 3.06
457 478 5.122707 AGAATTCATTCTCCTCCCTTTCC 57.877 43.478 8.44 0.00 43.27 3.13
484 505 7.387948 TCAGTCTTAGCTTGAAATACCTCAAAC 59.612 37.037 0.00 0.00 34.96 2.93
515 536 8.481974 TGATGGTGCATTTCAATGAAAATTAG 57.518 30.769 12.75 4.78 38.70 1.73
522 543 8.312564 TCTTAAAATGATGGTGCATTTCAATGA 58.687 29.630 3.60 0.00 45.09 2.57
603 627 5.587443 TCCATGTGAATTGCTCTTGTATGAG 59.413 40.000 0.00 0.00 37.16 2.90
622 646 8.815141 TTATTTTCAGTTTTGTCACATCCATG 57.185 30.769 0.00 0.00 0.00 3.66
929 959 3.735237 TTCTGAACTCACTCTGACACC 57.265 47.619 0.00 0.00 0.00 4.16
938 968 4.518970 TGCCTAACCAAATTCTGAACTCAC 59.481 41.667 0.00 0.00 0.00 3.51
1026 1057 1.610873 GAGGAGGACGAGGAGGAGT 59.389 63.158 0.00 0.00 0.00 3.85
1052 1086 0.460987 CGCTCCAAGGCTAAGTCCAG 60.461 60.000 0.00 0.00 0.00 3.86
1191 1225 9.533253 GTAAAGAAGCATATATGGTGCAAAAAT 57.467 29.630 22.16 4.43 44.87 1.82
1418 1616 7.307337 GCTTTTCATCAAATCAAACGAAATGGT 60.307 33.333 0.00 0.00 0.00 3.55
1426 1624 7.436080 TGACTTCTGCTTTTCATCAAATCAAAC 59.564 33.333 0.00 0.00 0.00 2.93
1682 1889 5.362430 GGATCAGGGGATAGATGATGTACTC 59.638 48.000 0.00 0.00 33.90 2.59
1734 1951 5.286320 CGAGGTGCACGTGATATATTATGTC 59.714 44.000 22.23 0.00 0.00 3.06
1819 2051 3.400054 GGAACTGGTAGCCCGGCT 61.400 66.667 18.05 18.05 41.25 5.52
1991 2223 1.003355 CAGGTTCGGTGAGCCACAT 60.003 57.895 2.51 0.00 35.33 3.21
2025 2257 2.654877 CACGGGCGTTAGGTCACT 59.345 61.111 0.00 0.00 0.00 3.41
2027 2259 3.583276 CTGCACGGGCGTTAGGTCA 62.583 63.158 4.58 0.00 45.35 4.02
2258 2490 4.532834 AGAAGCTTGTACAGTTTGGGAAA 58.467 39.130 2.10 0.00 0.00 3.13
2421 2653 9.052759 CCCCTCACACTGTATGTAATTAATTAC 57.947 37.037 25.18 25.18 40.64 1.89
2440 2672 4.080526 TGGCTAAGTATTTCTTCCCCTCAC 60.081 45.833 0.00 0.00 37.56 3.51
2441 2673 4.108570 TGGCTAAGTATTTCTTCCCCTCA 58.891 43.478 0.00 0.00 37.56 3.86
2448 2680 3.052944 TGGGCCATGGCTAAGTATTTCTT 60.053 43.478 34.70 0.00 41.60 2.52
2469 2701 3.770263 AGTTTTGGTGCGATGATGATG 57.230 42.857 0.00 0.00 0.00 3.07
2470 2702 4.517285 ACTAGTTTTGGTGCGATGATGAT 58.483 39.130 0.00 0.00 0.00 2.45
2471 2703 3.937814 ACTAGTTTTGGTGCGATGATGA 58.062 40.909 0.00 0.00 0.00 2.92
2498 2730 6.429385 GGGCTTCATCTTTCTTATCATCGAAT 59.571 38.462 0.00 0.00 0.00 3.34
2545 2780 4.541714 CCTATCACCAAAGATATCCCCCAT 59.458 45.833 0.00 0.00 30.61 4.00
2560 2795 2.044806 ATGGCGCACTCCCTATCACC 62.045 60.000 10.83 0.00 0.00 4.02
2610 2845 2.202756 CTCCCCACTAAGCGCGAC 60.203 66.667 12.10 0.04 0.00 5.19
2625 2860 1.919956 GCCATAGCGATGCCATGCTC 61.920 60.000 0.56 0.00 42.48 4.26
2630 2865 2.592574 GCAGCCATAGCGATGCCA 60.593 61.111 0.56 0.00 46.67 4.92
2640 2875 4.479993 GTCCCTCGCAGCAGCCAT 62.480 66.667 0.00 0.00 37.52 4.40
2652 2887 2.750350 CAAGTTCGGCCAGTCCCT 59.250 61.111 2.24 0.00 0.00 4.20
2672 2907 2.744202 GCCATGTCTCACCTTGTGTAAG 59.256 50.000 0.00 0.00 34.79 2.34
2674 2909 1.003118 GGCCATGTCTCACCTTGTGTA 59.997 52.381 0.00 0.00 34.79 2.90
2712 2947 3.081311 TTGAGATCGAGCCAGCCCG 62.081 63.158 0.00 0.00 0.00 6.13
2722 2957 5.409643 AATGGAAATAAGCGTTGAGATCG 57.590 39.130 0.00 0.00 0.00 3.69
2753 2988 0.904865 ATGGAGTCTCTCACCGGCAA 60.905 55.000 0.00 0.00 31.08 4.52
2762 2997 2.026905 GCGGGAGAAGATGGAGTCTCT 61.027 57.143 0.00 0.00 40.20 3.10
2763 2998 0.387565 GCGGGAGAAGATGGAGTCTC 59.612 60.000 0.00 0.00 39.70 3.36
2764 2999 0.324738 TGCGGGAGAAGATGGAGTCT 60.325 55.000 0.00 0.00 39.43 3.24
2769 3004 2.203126 GGCTGCGGGAGAAGATGG 60.203 66.667 0.00 0.00 37.93 3.51
2790 3025 0.532573 TCAGGGCGTGTTCATCTCTC 59.467 55.000 7.12 0.00 0.00 3.20
2796 3031 2.499693 TCTAATCATCAGGGCGTGTTCA 59.500 45.455 7.12 0.00 0.00 3.18
2806 3041 4.748892 ACGTGTCCTTGTCTAATCATCAG 58.251 43.478 0.00 0.00 0.00 2.90
2807 3042 4.219725 TGACGTGTCCTTGTCTAATCATCA 59.780 41.667 0.00 0.00 36.10 3.07
2808 3043 4.744570 TGACGTGTCCTTGTCTAATCATC 58.255 43.478 0.00 0.00 36.10 2.92
2827 3062 1.891616 GTCGGAGAGGGACCTTGAC 59.108 63.158 0.00 0.00 36.95 3.18
2885 3120 2.541999 CGGAGTTAAGGAGACGAGCATC 60.542 54.545 0.00 0.00 0.00 3.91
2924 3159 5.463286 CAATGTGGTCGTGTACTAGTACAA 58.537 41.667 32.02 18.29 46.33 2.41
2925 3160 4.616604 GCAATGTGGTCGTGTACTAGTACA 60.617 45.833 27.99 27.99 43.14 2.90
2926 3161 3.855950 GCAATGTGGTCGTGTACTAGTAC 59.144 47.826 23.58 23.58 36.63 2.73
2927 3162 3.760151 AGCAATGTGGTCGTGTACTAGTA 59.240 43.478 0.00 0.00 0.00 1.82
2928 3163 2.561419 AGCAATGTGGTCGTGTACTAGT 59.439 45.455 0.00 0.00 0.00 2.57
2944 3179 1.210204 TCTGCAAGGGGGAGAGCAAT 61.210 55.000 0.00 0.00 39.28 3.56
2978 3213 0.096281 ACACACGTCAACAACAAGCG 59.904 50.000 0.00 0.00 0.00 4.68
3052 3287 4.415332 CGTGTCCGACCCAGACCG 62.415 72.222 0.00 0.00 35.63 4.79
3056 3291 4.373116 CACCCGTGTCCGACCCAG 62.373 72.222 0.00 0.00 35.63 4.45
3068 3303 3.636043 GACACACACACGCACCCG 61.636 66.667 0.00 0.00 41.14 5.28
3069 3304 2.512745 TGACACACACACGCACCC 60.513 61.111 0.00 0.00 0.00 4.61
3070 3305 3.014036 CTGACACACACACGCACC 58.986 61.111 0.00 0.00 0.00 5.01
3071 3306 2.324477 GCTGACACACACACGCAC 59.676 61.111 0.00 0.00 0.00 5.34
3072 3307 3.261216 CGCTGACACACACACGCA 61.261 61.111 0.00 0.00 0.00 5.24
3073 3308 4.649954 GCGCTGACACACACACGC 62.650 66.667 0.00 0.00 40.14 5.34
3074 3309 4.339809 CGCGCTGACACACACACG 62.340 66.667 5.56 0.00 0.00 4.49
3075 3310 3.261951 ACGCGCTGACACACACAC 61.262 61.111 5.73 0.00 0.00 3.82
3076 3311 3.261216 CACGCGCTGACACACACA 61.261 61.111 5.73 0.00 0.00 3.72
3077 3312 3.261951 ACACGCGCTGACACACAC 61.262 61.111 5.73 0.00 0.00 3.82
3089 3324 2.456010 CAACTAAAAACCCACACACGC 58.544 47.619 0.00 0.00 0.00 5.34
3099 3334 4.160594 CCCGTATTTCGCCAACTAAAAAC 58.839 43.478 0.00 0.00 38.35 2.43
3106 3341 2.795973 GCCCCGTATTTCGCCAAC 59.204 61.111 0.00 0.00 38.35 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.