Multiple sequence alignment - TraesCS3B01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G151600 chr3B 100.000 3878 0 0 1 3878 143166856 143170733 0.000000e+00 7162.0
1 TraesCS3B01G151600 chr3B 79.701 468 87 5 2217 2680 29887877 29887414 8.030000e-87 331.0
2 TraesCS3B01G151600 chr3D 89.498 1495 118 15 1690 3177 93184822 93183360 0.000000e+00 1855.0
3 TraesCS3B01G151600 chr3D 92.220 1234 63 25 470 1699 93186057 93184853 0.000000e+00 1716.0
4 TraesCS3B01G151600 chr3D 94.210 639 32 4 3241 3878 93183362 93182728 0.000000e+00 970.0
5 TraesCS3B01G151600 chr3D 82.245 597 85 16 2123 2712 582892536 582893118 2.690000e-136 496.0
6 TraesCS3B01G151600 chr3D 80.866 554 95 7 2166 2713 613929014 613928466 3.580000e-115 425.0
7 TraesCS3B01G151600 chr3A 91.167 951 40 16 423 1360 546698773 546699692 0.000000e+00 1251.0
8 TraesCS3B01G151600 chr3A 92.005 838 41 12 2536 3371 546702958 546703771 0.000000e+00 1153.0
9 TraesCS3B01G151600 chr3A 84.229 1116 108 29 1447 2540 546699693 546700762 0.000000e+00 1024.0
10 TraesCS3B01G151600 chr3A 93.460 474 21 4 3405 3878 546703775 546704238 0.000000e+00 695.0
11 TraesCS3B01G151600 chr1D 82.910 591 93 7 2123 2709 400008989 400008403 3.430000e-145 525.0
12 TraesCS3B01G151600 chr1D 78.462 390 45 18 1536 1898 471835397 471835774 6.520000e-53 219.0
13 TraesCS3B01G151600 chr2B 82.545 550 87 8 2123 2667 707608229 707608774 3.510000e-130 475.0
14 TraesCS3B01G151600 chr4B 80.696 575 103 7 2126 2697 368415273 368415842 1.280000e-119 440.0
15 TraesCS3B01G151600 chr4B 84.314 102 13 2 1745 1843 237152274 237152375 3.190000e-16 97.1
16 TraesCS3B01G151600 chr7A 79.700 601 112 9 2118 2713 42799649 42800244 3.580000e-115 425.0
17 TraesCS3B01G151600 chr7A 81.667 120 17 3 1753 1868 26372861 26372743 1.150000e-15 95.3
18 TraesCS3B01G151600 chr4D 83.540 322 50 3 2353 2672 3614329 3614649 8.150000e-77 298.0
19 TraesCS3B01G151600 chr7D 77.327 419 59 21 1536 1930 439866778 439866372 8.440000e-52 215.0
20 TraesCS3B01G151600 chr5D 79.298 285 36 12 1563 1825 410251900 410252183 1.110000e-40 178.0
21 TraesCS3B01G151600 chr6A 75.000 204 42 7 1694 1889 516422440 516422642 6.900000e-13 86.1
22 TraesCS3B01G151600 chr7B 92.000 50 4 0 1761 1810 384028433 384028482 1.930000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G151600 chr3B 143166856 143170733 3877 False 7162.000000 7162 100.00000 1 3878 1 chr3B.!!$F1 3877
1 TraesCS3B01G151600 chr3D 93182728 93186057 3329 True 1513.666667 1855 91.97600 470 3878 3 chr3D.!!$R2 3408
2 TraesCS3B01G151600 chr3D 582892536 582893118 582 False 496.000000 496 82.24500 2123 2712 1 chr3D.!!$F1 589
3 TraesCS3B01G151600 chr3D 613928466 613929014 548 True 425.000000 425 80.86600 2166 2713 1 chr3D.!!$R1 547
4 TraesCS3B01G151600 chr3A 546698773 546704238 5465 False 1030.750000 1251 90.21525 423 3878 4 chr3A.!!$F1 3455
5 TraesCS3B01G151600 chr1D 400008403 400008989 586 True 525.000000 525 82.91000 2123 2709 1 chr1D.!!$R1 586
6 TraesCS3B01G151600 chr2B 707608229 707608774 545 False 475.000000 475 82.54500 2123 2667 1 chr2B.!!$F1 544
7 TraesCS3B01G151600 chr4B 368415273 368415842 569 False 440.000000 440 80.69600 2126 2697 1 chr4B.!!$F2 571
8 TraesCS3B01G151600 chr7A 42799649 42800244 595 False 425.000000 425 79.70000 2118 2713 1 chr7A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.038892 GAGCGAGTGTACCAAACGGA 60.039 55.0 0.00 0.0 0.00 4.69 F
362 363 0.105039 CTGGTGCCGAATAGGACCTC 59.895 60.0 0.00 0.0 45.00 3.85 F
951 965 0.108186 CACACGCATAGCTGAGGGAA 60.108 55.0 10.52 0.0 29.12 3.97 F
957 971 0.108207 CATAGCTGAGGGAAGCCAGG 59.892 60.0 0.00 0.0 44.68 4.45 F
2341 2426 0.174162 CAGGCCCTGTTTAGCATTGC 59.826 55.0 1.39 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1597 0.179092 GCATTTGAAGGCCTCCATGC 60.179 55.0 5.23 13.88 34.35 4.06 R
2327 2412 0.171007 CCACCGCAATGCTAAACAGG 59.829 55.0 2.94 0.00 0.00 4.00 R
2348 2433 1.344065 TAGACCCTTCTGCCGTTGAA 58.656 50.0 0.00 0.00 32.75 2.69 R
2672 4959 1.668826 TACCCCCTGACTTCTGCATT 58.331 50.0 0.00 0.00 0.00 3.56 R
3209 5496 0.821301 TGCGCCAGAATCAAACACCA 60.821 50.0 4.18 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.713764 AATTTGAACAGTTTTTCATAGTGGC 57.286 32.000 0.00 0.00 35.42 5.01
50 51 5.843673 TTGAACAGTTTTTCATAGTGGCA 57.156 34.783 0.00 0.00 35.42 4.92
51 52 6.403866 TTGAACAGTTTTTCATAGTGGCAT 57.596 33.333 0.00 0.00 35.42 4.40
52 53 6.403866 TGAACAGTTTTTCATAGTGGCATT 57.596 33.333 0.00 0.00 30.29 3.56
53 54 6.815089 TGAACAGTTTTTCATAGTGGCATTT 58.185 32.000 0.00 0.00 30.29 2.32
54 55 7.271511 TGAACAGTTTTTCATAGTGGCATTTT 58.728 30.769 0.00 0.00 30.29 1.82
55 56 7.768120 TGAACAGTTTTTCATAGTGGCATTTTT 59.232 29.630 0.00 0.00 30.29 1.94
144 145 9.171877 AGCCAACATTTTTAAAATTCTTGAACA 57.828 25.926 14.45 0.00 0.00 3.18
145 146 9.949174 GCCAACATTTTTAAAATTCTTGAACAT 57.051 25.926 14.45 0.00 0.00 2.71
173 174 9.462606 TTTTCTTTCAAATCTATTACTCCCTCC 57.537 33.333 0.00 0.00 0.00 4.30
174 175 6.817184 TCTTTCAAATCTATTACTCCCTCCG 58.183 40.000 0.00 0.00 0.00 4.63
175 176 6.610020 TCTTTCAAATCTATTACTCCCTCCGA 59.390 38.462 0.00 0.00 0.00 4.55
176 177 6.996180 TTCAAATCTATTACTCCCTCCGAT 57.004 37.500 0.00 0.00 0.00 4.18
177 178 6.591750 TCAAATCTATTACTCCCTCCGATC 57.408 41.667 0.00 0.00 0.00 3.69
178 179 5.480772 TCAAATCTATTACTCCCTCCGATCC 59.519 44.000 0.00 0.00 0.00 3.36
179 180 4.676799 ATCTATTACTCCCTCCGATCCA 57.323 45.455 0.00 0.00 0.00 3.41
180 181 4.676799 TCTATTACTCCCTCCGATCCAT 57.323 45.455 0.00 0.00 0.00 3.41
181 182 5.791303 TCTATTACTCCCTCCGATCCATA 57.209 43.478 0.00 0.00 0.00 2.74
182 183 6.342819 TCTATTACTCCCTCCGATCCATAT 57.657 41.667 0.00 0.00 0.00 1.78
183 184 6.742756 TCTATTACTCCCTCCGATCCATATT 58.257 40.000 0.00 0.00 0.00 1.28
184 185 7.879558 TCTATTACTCCCTCCGATCCATATTA 58.120 38.462 0.00 0.00 0.00 0.98
185 186 8.341513 TCTATTACTCCCTCCGATCCATATTAA 58.658 37.037 0.00 0.00 0.00 1.40
186 187 7.808279 ATTACTCCCTCCGATCCATATTAAA 57.192 36.000 0.00 0.00 0.00 1.52
187 188 7.808279 TTACTCCCTCCGATCCATATTAAAT 57.192 36.000 0.00 0.00 0.00 1.40
188 189 8.904648 TTACTCCCTCCGATCCATATTAAATA 57.095 34.615 0.00 0.00 0.00 1.40
189 190 7.996758 ACTCCCTCCGATCCATATTAAATAT 57.003 36.000 0.00 0.00 0.00 1.28
191 192 9.148879 ACTCCCTCCGATCCATATTAAATATAG 57.851 37.037 0.00 0.00 0.00 1.31
192 193 9.368416 CTCCCTCCGATCCATATTAAATATAGA 57.632 37.037 0.00 0.00 0.00 1.98
193 194 9.723760 TCCCTCCGATCCATATTAAATATAGAA 57.276 33.333 0.00 0.00 0.00 2.10
258 259 8.918202 ATGATACAAGTGAACTAGGAAAAACA 57.082 30.769 0.00 0.00 0.00 2.83
259 260 8.149973 TGATACAAGTGAACTAGGAAAAACAC 57.850 34.615 0.00 0.00 0.00 3.32
260 261 5.479716 ACAAGTGAACTAGGAAAAACACG 57.520 39.130 0.00 0.00 34.16 4.49
261 262 5.180271 ACAAGTGAACTAGGAAAAACACGA 58.820 37.500 0.00 0.00 34.16 4.35
262 263 5.293569 ACAAGTGAACTAGGAAAAACACGAG 59.706 40.000 0.00 0.00 34.16 4.18
263 264 3.808174 AGTGAACTAGGAAAAACACGAGC 59.192 43.478 0.00 0.00 34.16 5.03
264 265 3.558418 GTGAACTAGGAAAAACACGAGCA 59.442 43.478 0.00 0.00 0.00 4.26
265 266 4.034742 GTGAACTAGGAAAAACACGAGCAA 59.965 41.667 0.00 0.00 0.00 3.91
266 267 4.272504 TGAACTAGGAAAAACACGAGCAAG 59.727 41.667 0.00 0.00 0.00 4.01
267 268 3.805207 ACTAGGAAAAACACGAGCAAGT 58.195 40.909 0.00 0.00 0.00 3.16
268 269 3.560068 ACTAGGAAAAACACGAGCAAGTG 59.440 43.478 9.59 9.59 46.83 3.16
269 270 2.639065 AGGAAAAACACGAGCAAGTGA 58.361 42.857 16.74 0.00 44.43 3.41
270 271 3.214328 AGGAAAAACACGAGCAAGTGAT 58.786 40.909 16.74 3.83 44.43 3.06
271 272 3.251004 AGGAAAAACACGAGCAAGTGATC 59.749 43.478 16.74 9.49 44.43 2.92
277 278 4.794164 GAGCAAGTGATCGAGCGA 57.206 55.556 0.00 0.00 0.00 4.93
278 279 2.576083 GAGCAAGTGATCGAGCGAG 58.424 57.895 0.00 0.00 0.00 5.03
279 280 0.179150 GAGCAAGTGATCGAGCGAGT 60.179 55.000 0.00 0.00 0.00 4.18
280 281 0.457509 AGCAAGTGATCGAGCGAGTG 60.458 55.000 0.00 0.00 0.00 3.51
281 282 0.734253 GCAAGTGATCGAGCGAGTGT 60.734 55.000 0.00 0.00 0.00 3.55
282 283 1.467543 GCAAGTGATCGAGCGAGTGTA 60.468 52.381 0.00 0.00 0.00 2.90
283 284 2.177977 CAAGTGATCGAGCGAGTGTAC 58.822 52.381 0.00 0.00 0.00 2.90
284 285 0.733729 AGTGATCGAGCGAGTGTACC 59.266 55.000 0.00 0.00 0.00 3.34
285 286 0.450583 GTGATCGAGCGAGTGTACCA 59.549 55.000 0.00 0.00 0.00 3.25
286 287 1.135489 GTGATCGAGCGAGTGTACCAA 60.135 52.381 0.00 0.00 0.00 3.67
287 288 1.542472 TGATCGAGCGAGTGTACCAAA 59.458 47.619 0.00 0.00 0.00 3.28
288 289 1.918609 GATCGAGCGAGTGTACCAAAC 59.081 52.381 0.00 0.00 0.00 2.93
289 290 0.386352 TCGAGCGAGTGTACCAAACG 60.386 55.000 0.00 0.00 0.00 3.60
290 291 1.342082 CGAGCGAGTGTACCAAACGG 61.342 60.000 0.00 0.00 0.00 4.44
291 292 0.038892 GAGCGAGTGTACCAAACGGA 60.039 55.000 0.00 0.00 0.00 4.69
292 293 0.319297 AGCGAGTGTACCAAACGGAC 60.319 55.000 0.00 0.00 0.00 4.79
293 294 0.598158 GCGAGTGTACCAAACGGACA 60.598 55.000 0.00 0.00 0.00 4.02
294 295 1.415374 CGAGTGTACCAAACGGACAG 58.585 55.000 0.00 0.00 0.00 3.51
295 296 1.001048 CGAGTGTACCAAACGGACAGA 60.001 52.381 0.00 0.00 0.00 3.41
296 297 2.673833 GAGTGTACCAAACGGACAGAG 58.326 52.381 0.00 0.00 0.00 3.35
297 298 2.035576 GAGTGTACCAAACGGACAGAGT 59.964 50.000 0.00 0.00 0.00 3.24
298 299 2.132762 GTGTACCAAACGGACAGAGTG 58.867 52.381 0.00 0.00 0.00 3.51
299 300 2.033372 TGTACCAAACGGACAGAGTGA 58.967 47.619 0.00 0.00 0.00 3.41
300 301 2.223876 TGTACCAAACGGACAGAGTGAC 60.224 50.000 0.00 0.00 0.00 3.67
301 302 1.120530 ACCAAACGGACAGAGTGACT 58.879 50.000 0.00 0.00 0.00 3.41
302 303 1.068741 ACCAAACGGACAGAGTGACTC 59.931 52.381 3.98 3.98 0.00 3.36
303 304 1.605712 CCAAACGGACAGAGTGACTCC 60.606 57.143 9.33 0.00 0.00 3.85
304 305 1.341531 CAAACGGACAGAGTGACTCCT 59.658 52.381 9.33 0.00 0.00 3.69
305 306 2.557056 CAAACGGACAGAGTGACTCCTA 59.443 50.000 9.33 0.00 0.00 2.94
306 307 1.823797 ACGGACAGAGTGACTCCTAC 58.176 55.000 9.33 0.63 0.00 3.18
307 308 1.351683 ACGGACAGAGTGACTCCTACT 59.648 52.381 9.33 0.00 0.00 2.57
308 309 1.740585 CGGACAGAGTGACTCCTACTG 59.259 57.143 9.33 3.45 35.14 2.74
309 310 2.615747 CGGACAGAGTGACTCCTACTGA 60.616 54.545 9.33 0.00 33.53 3.41
311 312 2.422127 GACAGAGTGACTCCTACTGAGC 59.578 54.545 9.33 0.00 45.61 4.26
312 313 1.400142 CAGAGTGACTCCTACTGAGCG 59.600 57.143 9.33 0.00 45.61 5.03
313 314 0.736053 GAGTGACTCCTACTGAGCGG 59.264 60.000 0.00 0.00 45.61 5.52
314 315 1.139947 GTGACTCCTACTGAGCGGC 59.860 63.158 0.00 0.00 45.61 6.53
315 316 1.304134 TGACTCCTACTGAGCGGCA 60.304 57.895 1.45 0.00 45.61 5.69
316 317 0.684479 TGACTCCTACTGAGCGGCAT 60.684 55.000 1.45 0.00 45.61 4.40
317 318 0.249238 GACTCCTACTGAGCGGCATG 60.249 60.000 1.45 0.00 45.61 4.06
318 319 1.068753 CTCCTACTGAGCGGCATGG 59.931 63.158 1.45 0.00 33.47 3.66
319 320 2.109799 CCTACTGAGCGGCATGGG 59.890 66.667 1.45 0.00 0.00 4.00
320 321 2.434843 CCTACTGAGCGGCATGGGA 61.435 63.158 1.45 0.00 0.00 4.37
321 322 1.068753 CTACTGAGCGGCATGGGAG 59.931 63.158 1.45 0.00 0.00 4.30
322 323 2.985512 CTACTGAGCGGCATGGGAGC 62.986 65.000 1.45 0.00 0.00 4.70
339 340 3.923614 CGCTCCCGCTCTAATTCG 58.076 61.111 0.00 0.00 0.00 3.34
340 341 1.065928 CGCTCCCGCTCTAATTCGT 59.934 57.895 0.00 0.00 0.00 3.85
341 342 0.935366 CGCTCCCGCTCTAATTCGTC 60.935 60.000 0.00 0.00 0.00 4.20
342 343 0.935366 GCTCCCGCTCTAATTCGTCG 60.935 60.000 0.00 0.00 0.00 5.12
343 344 0.935366 CTCCCGCTCTAATTCGTCGC 60.935 60.000 0.00 0.00 0.00 5.19
344 345 1.065928 CCCGCTCTAATTCGTCGCT 59.934 57.895 0.00 0.00 0.00 4.93
345 346 1.209275 CCCGCTCTAATTCGTCGCTG 61.209 60.000 0.00 0.00 0.00 5.18
346 347 1.209275 CCGCTCTAATTCGTCGCTGG 61.209 60.000 0.00 0.00 0.00 4.85
347 348 0.525668 CGCTCTAATTCGTCGCTGGT 60.526 55.000 0.00 0.00 0.00 4.00
348 349 0.924090 GCTCTAATTCGTCGCTGGTG 59.076 55.000 0.00 0.00 0.00 4.17
349 350 0.924090 CTCTAATTCGTCGCTGGTGC 59.076 55.000 0.00 0.00 0.00 5.01
350 351 0.459585 TCTAATTCGTCGCTGGTGCC 60.460 55.000 0.00 0.00 35.36 5.01
351 352 1.752501 CTAATTCGTCGCTGGTGCCG 61.753 60.000 0.00 0.00 35.36 5.69
352 353 2.215465 TAATTCGTCGCTGGTGCCGA 62.215 55.000 0.00 0.00 35.36 5.54
353 354 3.583276 ATTCGTCGCTGGTGCCGAA 62.583 57.895 2.76 2.76 43.16 4.30
354 355 2.852495 ATTCGTCGCTGGTGCCGAAT 62.852 55.000 6.93 6.93 43.10 3.34
355 356 2.202690 CGTCGCTGGTGCCGAATA 60.203 61.111 0.00 0.00 35.36 1.75
356 357 2.230940 CGTCGCTGGTGCCGAATAG 61.231 63.158 0.00 0.00 35.36 1.73
357 358 1.883084 GTCGCTGGTGCCGAATAGG 60.883 63.158 0.00 0.00 44.97 2.57
358 359 2.055633 TCGCTGGTGCCGAATAGGA 61.056 57.895 0.00 0.00 45.00 2.94
359 360 1.883084 CGCTGGTGCCGAATAGGAC 60.883 63.158 0.00 0.00 45.00 3.85
360 361 1.523938 GCTGGTGCCGAATAGGACC 60.524 63.158 0.00 0.00 45.00 4.46
361 362 1.972660 GCTGGTGCCGAATAGGACCT 61.973 60.000 0.00 0.00 45.00 3.85
362 363 0.105039 CTGGTGCCGAATAGGACCTC 59.895 60.000 0.00 0.00 45.00 3.85
363 364 1.335132 TGGTGCCGAATAGGACCTCC 61.335 60.000 0.00 0.00 45.00 4.30
364 365 1.446366 GTGCCGAATAGGACCTCCC 59.554 63.158 0.00 0.00 45.00 4.30
365 366 1.764854 TGCCGAATAGGACCTCCCC 60.765 63.158 0.00 0.00 45.00 4.81
366 367 1.459730 GCCGAATAGGACCTCCCCT 60.460 63.158 0.00 0.00 45.00 4.79
367 368 1.759459 GCCGAATAGGACCTCCCCTG 61.759 65.000 0.00 0.00 45.00 4.45
368 369 1.749033 CGAATAGGACCTCCCCTGC 59.251 63.158 0.00 0.00 37.10 4.85
369 370 1.759459 CGAATAGGACCTCCCCTGCC 61.759 65.000 0.00 0.00 37.10 4.85
370 371 1.386057 AATAGGACCTCCCCTGCCC 60.386 63.158 0.00 0.00 37.10 5.36
371 372 2.208562 AATAGGACCTCCCCTGCCCA 62.209 60.000 0.00 0.00 37.10 5.36
372 373 2.916553 ATAGGACCTCCCCTGCCCAC 62.917 65.000 0.00 0.00 37.10 4.61
374 375 3.256960 GACCTCCCCTGCCCACAA 61.257 66.667 0.00 0.00 0.00 3.33
375 376 2.780924 ACCTCCCCTGCCCACAAA 60.781 61.111 0.00 0.00 0.00 2.83
376 377 2.283173 CCTCCCCTGCCCACAAAC 60.283 66.667 0.00 0.00 0.00 2.93
377 378 2.283173 CTCCCCTGCCCACAAACC 60.283 66.667 0.00 0.00 0.00 3.27
378 379 2.780924 TCCCCTGCCCACAAACCT 60.781 61.111 0.00 0.00 0.00 3.50
379 380 2.201210 CCCCTGCCCACAAACCTT 59.799 61.111 0.00 0.00 0.00 3.50
380 381 1.459348 CCCCTGCCCACAAACCTTT 60.459 57.895 0.00 0.00 0.00 3.11
381 382 1.053835 CCCCTGCCCACAAACCTTTT 61.054 55.000 0.00 0.00 0.00 2.27
382 383 1.710816 CCCTGCCCACAAACCTTTTA 58.289 50.000 0.00 0.00 0.00 1.52
383 384 2.256306 CCCTGCCCACAAACCTTTTAT 58.744 47.619 0.00 0.00 0.00 1.40
384 385 2.637382 CCCTGCCCACAAACCTTTTATT 59.363 45.455 0.00 0.00 0.00 1.40
385 386 3.306710 CCCTGCCCACAAACCTTTTATTC 60.307 47.826 0.00 0.00 0.00 1.75
386 387 3.323403 CCTGCCCACAAACCTTTTATTCA 59.677 43.478 0.00 0.00 0.00 2.57
387 388 4.559153 CTGCCCACAAACCTTTTATTCAG 58.441 43.478 0.00 0.00 0.00 3.02
388 389 4.219115 TGCCCACAAACCTTTTATTCAGA 58.781 39.130 0.00 0.00 0.00 3.27
389 390 4.651503 TGCCCACAAACCTTTTATTCAGAA 59.348 37.500 0.00 0.00 0.00 3.02
390 391 5.129485 TGCCCACAAACCTTTTATTCAGAAA 59.871 36.000 0.00 0.00 0.00 2.52
391 392 6.052360 GCCCACAAACCTTTTATTCAGAAAA 58.948 36.000 0.00 0.00 0.00 2.29
392 393 6.710295 GCCCACAAACCTTTTATTCAGAAAAT 59.290 34.615 0.00 0.00 0.00 1.82
393 394 7.875554 GCCCACAAACCTTTTATTCAGAAAATA 59.124 33.333 0.00 0.00 0.00 1.40
394 395 9.203421 CCCACAAACCTTTTATTCAGAAAATAC 57.797 33.333 0.00 0.00 0.00 1.89
395 396 8.911662 CCACAAACCTTTTATTCAGAAAATACG 58.088 33.333 0.00 0.00 0.00 3.06
396 397 8.424731 CACAAACCTTTTATTCAGAAAATACGC 58.575 33.333 0.00 0.00 0.00 4.42
397 398 8.138712 ACAAACCTTTTATTCAGAAAATACGCA 58.861 29.630 0.00 0.00 0.00 5.24
398 399 9.139174 CAAACCTTTTATTCAGAAAATACGCAT 57.861 29.630 0.00 0.00 0.00 4.73
399 400 8.687824 AACCTTTTATTCAGAAAATACGCATG 57.312 30.769 0.00 0.00 0.00 4.06
400 401 7.826690 ACCTTTTATTCAGAAAATACGCATGT 58.173 30.769 0.00 0.00 0.00 3.21
401 402 8.303876 ACCTTTTATTCAGAAAATACGCATGTT 58.696 29.630 0.00 0.00 0.00 2.71
402 403 9.781834 CCTTTTATTCAGAAAATACGCATGTTA 57.218 29.630 0.00 0.00 0.00 2.41
504 513 2.672996 GCCTGTTGTGATGCCCGT 60.673 61.111 0.00 0.00 0.00 5.28
512 521 3.822192 TGATGCCCGTCCGAGTCG 61.822 66.667 5.29 5.29 0.00 4.18
547 556 4.499183 CCTAGTCGGCATGATATTTCCTC 58.501 47.826 0.00 0.00 0.00 3.71
548 557 3.409026 AGTCGGCATGATATTTCCTCC 57.591 47.619 0.00 0.00 0.00 4.30
549 558 2.975489 AGTCGGCATGATATTTCCTCCT 59.025 45.455 0.00 0.00 0.00 3.69
552 561 3.648067 TCGGCATGATATTTCCTCCTTCT 59.352 43.478 0.00 0.00 0.00 2.85
555 564 5.997746 CGGCATGATATTTCCTCCTTCTAAA 59.002 40.000 0.00 0.00 0.00 1.85
588 597 2.872858 GGCACGATATTTCAGGTTCTCC 59.127 50.000 0.00 0.00 0.00 3.71
589 598 3.531538 GCACGATATTTCAGGTTCTCCA 58.468 45.455 0.00 0.00 35.89 3.86
593 602 4.202367 ACGATATTTCAGGTTCTCCATCCC 60.202 45.833 0.00 0.00 35.89 3.85
600 609 1.834263 AGGTTCTCCATCCCTTCTTCG 59.166 52.381 0.00 0.00 35.89 3.79
612 621 6.389906 CATCCCTTCTTCGTTTTGCTAAAAT 58.610 36.000 0.00 0.00 32.22 1.82
650 659 2.554370 TTCACGGGTAGGTTTCCAAG 57.446 50.000 0.00 0.00 0.00 3.61
710 719 2.158549 GGAGAAGATTGGGGAATCCTGG 60.159 54.545 0.00 0.00 36.20 4.45
824 834 0.768221 TCCACCAGCTTTCCACTCCT 60.768 55.000 0.00 0.00 0.00 3.69
825 835 0.111253 CCACCAGCTTTCCACTCCTT 59.889 55.000 0.00 0.00 0.00 3.36
826 836 1.528129 CACCAGCTTTCCACTCCTTC 58.472 55.000 0.00 0.00 0.00 3.46
878 892 2.361357 CCACGTCTCTCCTCCGGT 60.361 66.667 0.00 0.00 0.00 5.28
895 909 1.067776 CGGTCCTCCTCCATATAACGC 60.068 57.143 0.00 0.00 0.00 4.84
905 919 3.159858 ATATAACGCCGCTGCCCGT 62.160 57.895 7.11 7.11 39.70 5.28
921 935 0.802222 CCGTCACACAGCAGATACGG 60.802 60.000 0.00 0.00 43.20 4.02
949 963 1.522355 CCACACGCATAGCTGAGGG 60.522 63.158 0.00 0.00 0.00 4.30
950 964 1.517361 CACACGCATAGCTGAGGGA 59.483 57.895 10.52 0.00 29.12 4.20
951 965 0.108186 CACACGCATAGCTGAGGGAA 60.108 55.000 10.52 0.00 29.12 3.97
952 966 0.176680 ACACGCATAGCTGAGGGAAG 59.823 55.000 10.52 5.89 29.12 3.46
953 967 1.144936 ACGCATAGCTGAGGGAAGC 59.855 57.895 10.52 0.00 43.88 3.86
954 968 1.596477 CGCATAGCTGAGGGAAGCC 60.596 63.158 0.00 0.00 44.68 4.35
955 969 1.528824 GCATAGCTGAGGGAAGCCA 59.471 57.895 0.00 0.00 44.68 4.75
956 970 0.534652 GCATAGCTGAGGGAAGCCAG 60.535 60.000 0.00 0.00 44.68 4.85
957 971 0.108207 CATAGCTGAGGGAAGCCAGG 59.892 60.000 0.00 0.00 44.68 4.45
958 972 1.704007 ATAGCTGAGGGAAGCCAGGC 61.704 60.000 1.84 1.84 44.68 4.85
959 973 4.039092 GCTGAGGGAAGCCAGGCA 62.039 66.667 15.80 0.00 37.20 4.75
960 974 2.045536 CTGAGGGAAGCCAGGCAC 60.046 66.667 15.80 7.18 0.00 5.01
961 975 3.965539 CTGAGGGAAGCCAGGCACG 62.966 68.421 15.80 0.00 0.00 5.34
966 980 2.047274 GAAGCCAGGCACGCAGTA 60.047 61.111 15.80 0.00 41.61 2.74
967 981 2.046892 AAGCCAGGCACGCAGTAG 60.047 61.111 15.80 0.00 41.61 2.57
1086 1121 1.671054 CACCGGCATCGTGACCTTT 60.671 57.895 0.00 0.00 33.95 3.11
1098 1133 3.644738 TCGTGACCTTTTTCCTCTACCTT 59.355 43.478 0.00 0.00 0.00 3.50
1176 1211 2.352422 GTGCTCATGGTGCTGGGA 59.648 61.111 11.66 0.00 0.00 4.37
1326 1361 2.672307 GCTCTGCTGCTGGTGCTT 60.672 61.111 6.69 0.00 40.48 3.91
1380 1415 1.632018 CCCCGGGGTTTAGATGAGCA 61.632 60.000 33.25 0.00 0.00 4.26
1381 1416 0.474184 CCCGGGGTTTAGATGAGCAT 59.526 55.000 14.71 0.00 0.00 3.79
1382 1417 1.597742 CCGGGGTTTAGATGAGCATG 58.402 55.000 0.00 0.00 0.00 4.06
1383 1418 0.947244 CGGGGTTTAGATGAGCATGC 59.053 55.000 10.51 10.51 0.00 4.06
1426 1461 4.340666 AGCTATGTATCCCGATGCAGATAG 59.659 45.833 0.00 1.60 36.88 2.08
1437 1472 6.207614 TCCCGATGCAGATAGCTATGATATAC 59.792 42.308 11.94 0.00 45.94 1.47
1547 1585 1.000394 CGTCCCCGGAAATTGCTTTTT 60.000 47.619 0.73 0.00 0.00 1.94
1549 1587 1.346068 TCCCCGGAAATTGCTTTTTGG 59.654 47.619 0.73 0.00 0.00 3.28
1550 1588 1.346068 CCCCGGAAATTGCTTTTTGGA 59.654 47.619 0.73 0.00 0.00 3.53
1552 1590 2.612721 CCCGGAAATTGCTTTTTGGAGG 60.613 50.000 0.73 0.00 0.00 4.30
1553 1591 2.037121 CCGGAAATTGCTTTTTGGAGGT 59.963 45.455 0.00 0.00 0.00 3.85
1554 1592 3.317150 CGGAAATTGCTTTTTGGAGGTC 58.683 45.455 0.00 0.00 0.00 3.85
1555 1593 3.317150 GGAAATTGCTTTTTGGAGGTCG 58.683 45.455 0.00 0.00 0.00 4.79
1557 1595 1.256812 ATTGCTTTTTGGAGGTCGGG 58.743 50.000 0.00 0.00 0.00 5.14
1558 1596 0.183971 TTGCTTTTTGGAGGTCGGGA 59.816 50.000 0.00 0.00 0.00 5.14
1559 1597 0.250727 TGCTTTTTGGAGGTCGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
1686 1724 3.810941 AGTGCGTAAATTTTCAGGACGAA 59.189 39.130 13.20 1.28 35.59 3.85
1691 1729 4.557301 CGTAAATTTTCAGGACGAAATGCC 59.443 41.667 4.77 0.00 43.12 4.40
1743 1823 9.480861 TTTTAACACATAATATCATCCCCACAA 57.519 29.630 0.00 0.00 0.00 3.33
1792 1872 5.092781 GGTCGCATTTCAACGTATTTCATT 58.907 37.500 0.00 0.00 0.00 2.57
1813 1893 6.575572 TCATTCTAAAATTTTACACACACGCG 59.424 34.615 3.53 3.53 0.00 6.01
1824 1904 0.315886 ACACACGCGTCACATCCTTA 59.684 50.000 9.86 0.00 0.00 2.69
1907 1988 1.075601 AAGTGGGCCTCCATGAAAGA 58.924 50.000 4.53 0.00 46.09 2.52
1911 1992 0.744771 GGGCCTCCATGAAAGACGAC 60.745 60.000 0.84 0.00 0.00 4.34
1914 1995 1.066858 GCCTCCATGAAAGACGACAGA 60.067 52.381 0.00 0.00 0.00 3.41
1948 2030 9.524903 TCATTCTCCTCCATCCCATAATATAAT 57.475 33.333 0.00 0.00 0.00 1.28
2085 2167 1.139853 GGATGAGCCAAAGGAGACGAT 59.860 52.381 0.00 0.00 36.34 3.73
2087 2169 3.007398 GGATGAGCCAAAGGAGACGATAT 59.993 47.826 0.00 0.00 36.34 1.63
2098 2180 5.091261 AGGAGACGATATAATTCCCATGC 57.909 43.478 0.00 0.00 0.00 4.06
2135 2218 4.202673 GGGGATCTATGGGGCATCTTTTTA 60.203 45.833 0.00 0.00 0.00 1.52
2149 2232 5.353123 GCATCTTTTTAGGGTTGTACATCGA 59.647 40.000 0.00 0.00 0.00 3.59
2150 2233 6.038271 GCATCTTTTTAGGGTTGTACATCGAT 59.962 38.462 0.00 0.00 0.00 3.59
2334 2419 1.541368 AGGAGGCAGGCCCTGTTTA 60.541 57.895 13.35 0.00 46.60 2.01
2341 2426 0.174162 CAGGCCCTGTTTAGCATTGC 59.826 55.000 1.39 0.00 0.00 3.56
2348 2433 0.893270 TGTTTAGCATTGCGGTGGCT 60.893 50.000 2.38 0.00 40.82 4.75
2422 2507 2.668212 TGCGAAAGAAGGTGGCGG 60.668 61.111 0.00 0.00 0.00 6.13
2462 2547 0.822944 TGTGGTGCACATTGAGGGTG 60.823 55.000 20.43 0.00 39.62 4.61
2672 4959 0.606130 ATGGTTGTGTGCATCGCTCA 60.606 50.000 0.00 0.00 0.00 4.26
2684 4971 2.004733 CATCGCTCAATGCAGAAGTCA 58.995 47.619 0.00 0.00 43.06 3.41
2698 4985 2.846827 AGAAGTCAGGGGGTAATCCTTG 59.153 50.000 0.00 0.00 35.49 3.61
2704 4991 3.399644 TCAGGGGGTAATCCTTGTTTTCA 59.600 43.478 0.00 0.00 35.64 2.69
2705 4992 4.140900 TCAGGGGGTAATCCTTGTTTTCAA 60.141 41.667 0.00 0.00 35.64 2.69
2706 4993 4.591072 CAGGGGGTAATCCTTGTTTTCAAA 59.409 41.667 0.00 0.00 39.47 2.69
2707 4994 5.071115 CAGGGGGTAATCCTTGTTTTCAAAA 59.929 40.000 0.00 0.00 39.47 2.44
2708 4995 5.668080 AGGGGGTAATCCTTGTTTTCAAAAA 59.332 36.000 0.00 0.00 39.47 1.94
2786 5073 7.601886 TCTGAAAAATGTTTGCTTTGACTTTGA 59.398 29.630 0.00 0.00 0.00 2.69
2895 5182 4.639334 CATGATGAGGGTCAGAATGGTAG 58.361 47.826 0.00 0.00 36.16 3.18
2956 5243 3.204526 GAGATGAAGCTGAGTTCATGGG 58.795 50.000 12.66 0.00 45.32 4.00
2975 5262 5.004922 TGGGTGAAAACAAGTGAAATGAC 57.995 39.130 0.00 0.00 0.00 3.06
2982 5269 7.492344 GTGAAAACAAGTGAAATGACTTCCATT 59.508 33.333 0.00 0.00 46.86 3.16
3000 5287 5.235305 CCATTTCGTGGTCTTATTTGAGG 57.765 43.478 0.00 0.00 43.44 3.86
3048 5335 3.445805 TGACACGGTCATGCTCAATACTA 59.554 43.478 3.02 0.00 37.67 1.82
3063 5350 6.864165 GCTCAATACTACTAAATTCTCCTCCG 59.136 42.308 0.00 0.00 0.00 4.63
3104 5391 9.064706 CAATATCAAAGCTCATAAGATCTTGGT 57.935 33.333 18.47 3.83 31.05 3.67
3119 5406 6.735556 AGATCTTGGTGGTGAAAATAAGGAT 58.264 36.000 0.00 0.00 0.00 3.24
3224 5511 5.738909 ACTAGATCTGGTGTTTGATTCTGG 58.261 41.667 11.42 0.00 0.00 3.86
3225 5512 3.350833 AGATCTGGTGTTTGATTCTGGC 58.649 45.455 0.00 0.00 0.00 4.85
3226 5513 1.522668 TCTGGTGTTTGATTCTGGCG 58.477 50.000 0.00 0.00 0.00 5.69
3234 5521 2.892425 GATTCTGGCGCAGTCGGG 60.892 66.667 10.83 0.00 40.15 5.14
3276 5563 3.312890 GAGGAAGGGGAAGATGAGATGA 58.687 50.000 0.00 0.00 0.00 2.92
3302 5590 9.574516 AAGTCACAAGAATCTTTAATACCAAGT 57.425 29.630 0.00 0.00 0.00 3.16
3378 5666 7.318141 TGTAACTGTTAGAAGATACGAAAGGG 58.682 38.462 0.00 0.00 30.28 3.95
3399 5687 3.561313 GGTCAAAGGCCAGAAAGATGGTA 60.561 47.826 5.01 0.00 42.75 3.25
3418 5706 4.949238 TGGTAACATGATTGCACTTGCTAT 59.051 37.500 0.00 0.00 46.17 2.97
3427 5715 1.522092 CACTTGCTATGCGGAGGGA 59.478 57.895 0.00 0.00 0.00 4.20
3449 5737 7.279750 GGAAACCTCTAAAAACAATACACCA 57.720 36.000 0.00 0.00 0.00 4.17
3450 5738 7.892609 GGAAACCTCTAAAAACAATACACCAT 58.107 34.615 0.00 0.00 0.00 3.55
3491 5782 4.366267 AGAATTGAGTAGGTGACCCTGAT 58.634 43.478 0.00 0.00 42.67 2.90
3492 5783 4.163078 AGAATTGAGTAGGTGACCCTGATG 59.837 45.833 0.00 0.00 42.67 3.07
3493 5784 2.919772 TGAGTAGGTGACCCTGATGA 57.080 50.000 0.00 0.00 42.67 2.92
3555 5846 1.210234 TGGAATCCGTCACAGATGCAT 59.790 47.619 0.00 0.00 0.00 3.96
3558 5849 2.924757 ATCCGTCACAGATGCATGAT 57.075 45.000 2.46 0.00 0.00 2.45
3570 5861 6.037830 CACAGATGCATGATCACTTGTTGATA 59.962 38.462 2.46 0.00 45.67 2.15
3599 5890 8.485079 GCATGTTGCCTAATTTGGTCTTCAAAT 61.485 37.037 7.77 0.00 45.85 2.32
3694 5988 8.032451 GCAAAGTTTTAAATAGTTGGCTATGGA 58.968 33.333 8.74 0.00 37.92 3.41
3718 6012 5.656213 AATAGCGGTAGAAGTGTTAGTGT 57.344 39.130 0.00 0.00 0.00 3.55
3724 6018 5.224888 CGGTAGAAGTGTTAGTGTGCTAAA 58.775 41.667 0.00 0.00 38.74 1.85
3737 6031 6.528537 AGTGTGCTAAATGGCATTAAATGA 57.471 33.333 14.05 0.00 44.34 2.57
3765 6059 5.450171 GCATGATGCTCTTACAAATGCTAG 58.550 41.667 10.72 0.00 40.96 3.42
3771 6065 3.059325 GCTCTTACAAATGCTAGATGGCG 60.059 47.826 0.00 0.00 34.52 5.69
3817 6111 4.217118 GTGATGCTTGGATGAAGTTTCACT 59.783 41.667 0.00 0.00 39.78 3.41
3870 6164 8.877779 TGTTGTTTTTATGTTTGGATTTGAGTG 58.122 29.630 0.00 0.00 0.00 3.51
3873 6167 8.877779 TGTTTTTATGTTTGGATTTGAGTGTTG 58.122 29.630 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.611757 GCCACTATGAAAAACTGTTCAAATTTT 58.388 29.630 0.00 0.00 40.76 1.82
24 25 7.768120 TGCCACTATGAAAAACTGTTCAAATTT 59.232 29.630 0.00 0.00 40.76 1.82
25 26 7.271511 TGCCACTATGAAAAACTGTTCAAATT 58.728 30.769 0.00 0.00 40.76 1.82
26 27 6.815089 TGCCACTATGAAAAACTGTTCAAAT 58.185 32.000 0.00 0.00 40.76 2.32
27 28 6.214191 TGCCACTATGAAAAACTGTTCAAA 57.786 33.333 0.00 0.00 40.76 2.69
28 29 5.843673 TGCCACTATGAAAAACTGTTCAA 57.156 34.783 0.00 0.00 40.76 2.69
29 30 6.403866 AATGCCACTATGAAAAACTGTTCA 57.596 33.333 0.00 0.00 41.59 3.18
30 31 7.713764 AAAATGCCACTATGAAAAACTGTTC 57.286 32.000 0.00 0.00 0.00 3.18
118 119 9.171877 TGTTCAAGAATTTTAAAAATGTTGGCT 57.828 25.926 19.89 0.00 0.00 4.75
119 120 9.949174 ATGTTCAAGAATTTTAAAAATGTTGGC 57.051 25.926 19.89 15.05 0.00 4.52
147 148 9.462606 GGAGGGAGTAATAGATTTGAAAGAAAA 57.537 33.333 0.00 0.00 0.00 2.29
148 149 7.769044 CGGAGGGAGTAATAGATTTGAAAGAAA 59.231 37.037 0.00 0.00 0.00 2.52
149 150 7.125204 TCGGAGGGAGTAATAGATTTGAAAGAA 59.875 37.037 0.00 0.00 0.00 2.52
150 151 6.610020 TCGGAGGGAGTAATAGATTTGAAAGA 59.390 38.462 0.00 0.00 0.00 2.52
151 152 6.817184 TCGGAGGGAGTAATAGATTTGAAAG 58.183 40.000 0.00 0.00 0.00 2.62
152 153 6.801718 TCGGAGGGAGTAATAGATTTGAAA 57.198 37.500 0.00 0.00 0.00 2.69
153 154 6.014499 GGATCGGAGGGAGTAATAGATTTGAA 60.014 42.308 0.00 0.00 0.00 2.69
154 155 5.480772 GGATCGGAGGGAGTAATAGATTTGA 59.519 44.000 0.00 0.00 0.00 2.69
155 156 5.246203 TGGATCGGAGGGAGTAATAGATTTG 59.754 44.000 0.00 0.00 0.00 2.32
156 157 5.403512 TGGATCGGAGGGAGTAATAGATTT 58.596 41.667 0.00 0.00 0.00 2.17
157 158 5.011982 TGGATCGGAGGGAGTAATAGATT 57.988 43.478 0.00 0.00 0.00 2.40
158 159 4.676799 TGGATCGGAGGGAGTAATAGAT 57.323 45.455 0.00 0.00 0.00 1.98
159 160 4.676799 ATGGATCGGAGGGAGTAATAGA 57.323 45.455 0.00 0.00 0.00 1.98
160 161 8.534954 TTAATATGGATCGGAGGGAGTAATAG 57.465 38.462 0.00 0.00 0.00 1.73
161 162 8.904648 TTTAATATGGATCGGAGGGAGTAATA 57.095 34.615 0.00 0.00 0.00 0.98
162 163 7.808279 TTTAATATGGATCGGAGGGAGTAAT 57.192 36.000 0.00 0.00 0.00 1.89
163 164 7.808279 ATTTAATATGGATCGGAGGGAGTAA 57.192 36.000 0.00 0.00 0.00 2.24
165 166 7.996758 ATATTTAATATGGATCGGAGGGAGT 57.003 36.000 0.00 0.00 0.00 3.85
166 167 9.368416 TCTATATTTAATATGGATCGGAGGGAG 57.632 37.037 6.88 0.00 29.19 4.30
167 168 9.723760 TTCTATATTTAATATGGATCGGAGGGA 57.276 33.333 10.95 0.00 33.54 4.20
187 188 9.084533 ACCTGCTGGTTACAAAATTTTTCTATA 57.915 29.630 9.88 0.00 46.05 1.31
188 189 7.872483 CACCTGCTGGTTACAAAATTTTTCTAT 59.128 33.333 13.36 0.00 46.05 1.98
189 190 7.206687 CACCTGCTGGTTACAAAATTTTTCTA 58.793 34.615 13.36 0.00 46.05 2.10
190 191 6.048509 CACCTGCTGGTTACAAAATTTTTCT 58.951 36.000 13.36 0.00 46.05 2.52
191 192 5.236263 CCACCTGCTGGTTACAAAATTTTTC 59.764 40.000 13.36 0.00 46.05 2.29
192 193 5.104735 TCCACCTGCTGGTTACAAAATTTTT 60.105 36.000 13.36 0.00 46.05 1.94
193 194 4.407296 TCCACCTGCTGGTTACAAAATTTT 59.593 37.500 13.36 0.00 46.05 1.82
194 195 3.964031 TCCACCTGCTGGTTACAAAATTT 59.036 39.130 13.36 0.00 46.05 1.82
195 196 3.571590 TCCACCTGCTGGTTACAAAATT 58.428 40.909 13.36 0.00 46.05 1.82
196 197 3.157087 CTCCACCTGCTGGTTACAAAAT 58.843 45.455 13.36 0.00 46.05 1.82
197 198 2.092103 ACTCCACCTGCTGGTTACAAAA 60.092 45.455 13.36 0.00 46.05 2.44
198 199 1.493022 ACTCCACCTGCTGGTTACAAA 59.507 47.619 13.36 0.00 46.05 2.83
199 200 1.136828 ACTCCACCTGCTGGTTACAA 58.863 50.000 13.36 0.00 46.05 2.41
200 201 0.396435 CACTCCACCTGCTGGTTACA 59.604 55.000 13.36 0.00 46.05 2.41
201 202 0.396811 ACACTCCACCTGCTGGTTAC 59.603 55.000 13.36 0.00 46.05 2.50
202 203 1.136828 AACACTCCACCTGCTGGTTA 58.863 50.000 13.36 3.50 46.05 2.85
203 204 0.258774 AAACACTCCACCTGCTGGTT 59.741 50.000 13.36 0.00 46.05 3.67
205 206 1.402787 AAAAACACTCCACCTGCTGG 58.597 50.000 8.29 8.29 42.29 4.85
233 234 8.784043 GTGTTTTTCCTAGTTCACTTGTATCAT 58.216 33.333 0.00 0.00 0.00 2.45
234 235 7.042321 CGTGTTTTTCCTAGTTCACTTGTATCA 60.042 37.037 0.00 0.00 0.00 2.15
235 236 7.170320 TCGTGTTTTTCCTAGTTCACTTGTATC 59.830 37.037 0.00 0.00 0.00 2.24
236 237 6.987992 TCGTGTTTTTCCTAGTTCACTTGTAT 59.012 34.615 0.00 0.00 0.00 2.29
237 238 6.339730 TCGTGTTTTTCCTAGTTCACTTGTA 58.660 36.000 0.00 0.00 0.00 2.41
238 239 5.180271 TCGTGTTTTTCCTAGTTCACTTGT 58.820 37.500 0.00 0.00 0.00 3.16
239 240 5.728351 TCGTGTTTTTCCTAGTTCACTTG 57.272 39.130 0.00 0.00 0.00 3.16
240 241 4.272748 GCTCGTGTTTTTCCTAGTTCACTT 59.727 41.667 0.00 0.00 0.00 3.16
241 242 3.808174 GCTCGTGTTTTTCCTAGTTCACT 59.192 43.478 0.00 0.00 0.00 3.41
242 243 3.558418 TGCTCGTGTTTTTCCTAGTTCAC 59.442 43.478 0.00 0.00 0.00 3.18
243 244 3.799366 TGCTCGTGTTTTTCCTAGTTCA 58.201 40.909 0.00 0.00 0.00 3.18
244 245 4.272748 ACTTGCTCGTGTTTTTCCTAGTTC 59.727 41.667 0.00 0.00 0.00 3.01
245 246 4.035208 CACTTGCTCGTGTTTTTCCTAGTT 59.965 41.667 0.00 0.00 0.00 2.24
246 247 3.560068 CACTTGCTCGTGTTTTTCCTAGT 59.440 43.478 0.00 0.00 0.00 2.57
247 248 3.807622 TCACTTGCTCGTGTTTTTCCTAG 59.192 43.478 5.98 0.00 36.33 3.02
248 249 3.799366 TCACTTGCTCGTGTTTTTCCTA 58.201 40.909 5.98 0.00 36.33 2.94
249 250 2.639065 TCACTTGCTCGTGTTTTTCCT 58.361 42.857 5.98 0.00 36.33 3.36
250 251 3.555518 GATCACTTGCTCGTGTTTTTCC 58.444 45.455 5.98 0.00 36.33 3.13
251 252 3.059868 TCGATCACTTGCTCGTGTTTTTC 60.060 43.478 2.71 0.92 35.45 2.29
252 253 2.869801 TCGATCACTTGCTCGTGTTTTT 59.130 40.909 2.71 0.00 35.45 1.94
253 254 2.476619 CTCGATCACTTGCTCGTGTTTT 59.523 45.455 2.71 0.00 35.45 2.43
254 255 2.061773 CTCGATCACTTGCTCGTGTTT 58.938 47.619 2.71 0.00 35.45 2.83
255 256 1.702886 CTCGATCACTTGCTCGTGTT 58.297 50.000 2.71 0.00 35.45 3.32
256 257 0.734253 GCTCGATCACTTGCTCGTGT 60.734 55.000 2.71 0.00 35.45 4.49
257 258 1.737196 CGCTCGATCACTTGCTCGTG 61.737 60.000 2.71 1.97 35.45 4.35
258 259 1.515088 CGCTCGATCACTTGCTCGT 60.515 57.895 2.71 0.00 35.45 4.18
259 260 1.199229 CTCGCTCGATCACTTGCTCG 61.199 60.000 0.00 0.00 35.27 5.03
260 261 0.179150 ACTCGCTCGATCACTTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
261 262 0.457509 CACTCGCTCGATCACTTGCT 60.458 55.000 0.00 0.00 0.00 3.91
262 263 0.734253 ACACTCGCTCGATCACTTGC 60.734 55.000 0.00 0.00 0.00 4.01
263 264 2.177977 GTACACTCGCTCGATCACTTG 58.822 52.381 0.00 0.00 0.00 3.16
264 265 1.132643 GGTACACTCGCTCGATCACTT 59.867 52.381 0.00 0.00 0.00 3.16
265 266 0.733729 GGTACACTCGCTCGATCACT 59.266 55.000 0.00 0.00 0.00 3.41
266 267 0.450583 TGGTACACTCGCTCGATCAC 59.549 55.000 0.00 0.00 0.00 3.06
267 268 1.170442 TTGGTACACTCGCTCGATCA 58.830 50.000 0.00 0.00 39.29 2.92
268 269 1.918609 GTTTGGTACACTCGCTCGATC 59.081 52.381 0.00 0.00 39.29 3.69
269 270 1.731424 CGTTTGGTACACTCGCTCGAT 60.731 52.381 0.00 0.00 39.29 3.59
270 271 0.386352 CGTTTGGTACACTCGCTCGA 60.386 55.000 0.00 0.00 39.29 4.04
271 272 1.342082 CCGTTTGGTACACTCGCTCG 61.342 60.000 0.00 0.00 39.29 5.03
272 273 0.038892 TCCGTTTGGTACACTCGCTC 60.039 55.000 0.00 0.00 39.29 5.03
273 274 0.319297 GTCCGTTTGGTACACTCGCT 60.319 55.000 0.00 0.00 39.29 4.93
274 275 0.598158 TGTCCGTTTGGTACACTCGC 60.598 55.000 0.00 0.00 39.29 5.03
275 276 1.001048 TCTGTCCGTTTGGTACACTCG 60.001 52.381 0.00 0.00 39.29 4.18
276 277 2.035576 ACTCTGTCCGTTTGGTACACTC 59.964 50.000 0.00 0.00 39.29 3.51
277 278 2.037144 ACTCTGTCCGTTTGGTACACT 58.963 47.619 0.00 0.00 39.29 3.55
278 279 2.132762 CACTCTGTCCGTTTGGTACAC 58.867 52.381 0.00 0.00 39.29 2.90
279 280 2.033372 TCACTCTGTCCGTTTGGTACA 58.967 47.619 0.00 0.00 36.30 2.90
280 281 2.035576 AGTCACTCTGTCCGTTTGGTAC 59.964 50.000 0.00 0.00 36.30 3.34
281 282 2.295349 GAGTCACTCTGTCCGTTTGGTA 59.705 50.000 0.00 0.00 36.30 3.25
282 283 1.068741 GAGTCACTCTGTCCGTTTGGT 59.931 52.381 0.00 0.00 36.30 3.67
283 284 1.605712 GGAGTCACTCTGTCCGTTTGG 60.606 57.143 4.40 0.00 0.00 3.28
284 285 1.341531 AGGAGTCACTCTGTCCGTTTG 59.658 52.381 4.40 0.00 35.33 2.93
285 286 1.705873 AGGAGTCACTCTGTCCGTTT 58.294 50.000 4.40 0.00 35.33 3.60
286 287 2.161030 GTAGGAGTCACTCTGTCCGTT 58.839 52.381 4.40 0.00 35.33 4.44
287 288 1.351683 AGTAGGAGTCACTCTGTCCGT 59.648 52.381 4.40 0.00 35.33 4.69
288 289 1.740585 CAGTAGGAGTCACTCTGTCCG 59.259 57.143 4.40 0.00 35.33 4.79
289 290 3.013921 CTCAGTAGGAGTCACTCTGTCC 58.986 54.545 4.40 0.00 38.90 4.02
290 291 2.422127 GCTCAGTAGGAGTCACTCTGTC 59.578 54.545 4.40 0.00 45.88 3.51
291 292 2.442413 GCTCAGTAGGAGTCACTCTGT 58.558 52.381 4.40 0.00 45.88 3.41
292 293 1.400142 CGCTCAGTAGGAGTCACTCTG 59.600 57.143 4.40 0.00 45.88 3.35
293 294 1.680555 CCGCTCAGTAGGAGTCACTCT 60.681 57.143 4.40 0.00 45.88 3.24
294 295 0.736053 CCGCTCAGTAGGAGTCACTC 59.264 60.000 0.00 0.00 45.88 3.51
295 296 1.316706 GCCGCTCAGTAGGAGTCACT 61.317 60.000 0.00 0.00 45.88 3.41
296 297 1.139947 GCCGCTCAGTAGGAGTCAC 59.860 63.158 0.00 0.00 45.88 3.67
297 298 0.684479 ATGCCGCTCAGTAGGAGTCA 60.684 55.000 0.00 0.00 45.88 3.41
298 299 0.249238 CATGCCGCTCAGTAGGAGTC 60.249 60.000 0.00 0.00 45.88 3.36
299 300 1.680522 CCATGCCGCTCAGTAGGAGT 61.681 60.000 0.00 0.00 45.88 3.85
300 301 1.068753 CCATGCCGCTCAGTAGGAG 59.931 63.158 0.00 0.00 46.93 3.69
301 302 2.434843 CCCATGCCGCTCAGTAGGA 61.435 63.158 0.00 0.00 0.00 2.94
302 303 2.109799 CCCATGCCGCTCAGTAGG 59.890 66.667 0.00 0.00 0.00 3.18
303 304 1.068753 CTCCCATGCCGCTCAGTAG 59.931 63.158 0.00 0.00 0.00 2.57
304 305 3.094062 GCTCCCATGCCGCTCAGTA 62.094 63.158 0.00 0.00 0.00 2.74
305 306 4.479993 GCTCCCATGCCGCTCAGT 62.480 66.667 0.00 0.00 0.00 3.41
324 325 0.935366 GCGACGAATTAGAGCGGGAG 60.935 60.000 0.00 0.00 0.00 4.30
325 326 1.065273 GCGACGAATTAGAGCGGGA 59.935 57.895 0.00 0.00 0.00 5.14
326 327 1.065928 AGCGACGAATTAGAGCGGG 59.934 57.895 0.00 0.00 0.00 6.13
327 328 1.209275 CCAGCGACGAATTAGAGCGG 61.209 60.000 0.00 0.00 0.00 5.52
328 329 0.525668 ACCAGCGACGAATTAGAGCG 60.526 55.000 0.00 0.00 0.00 5.03
329 330 0.924090 CACCAGCGACGAATTAGAGC 59.076 55.000 0.00 0.00 0.00 4.09
330 331 0.924090 GCACCAGCGACGAATTAGAG 59.076 55.000 0.00 0.00 0.00 2.43
331 332 0.459585 GGCACCAGCGACGAATTAGA 60.460 55.000 0.00 0.00 43.41 2.10
332 333 1.752501 CGGCACCAGCGACGAATTAG 61.753 60.000 0.00 0.00 43.41 1.73
333 334 1.807981 CGGCACCAGCGACGAATTA 60.808 57.895 0.00 0.00 43.41 1.40
334 335 3.118454 CGGCACCAGCGACGAATT 61.118 61.111 0.00 0.00 43.41 2.17
335 336 2.852495 ATTCGGCACCAGCGACGAAT 62.852 55.000 8.52 8.52 44.27 3.34
336 337 2.215465 TATTCGGCACCAGCGACGAA 62.215 55.000 3.84 3.84 44.39 3.85
337 338 2.607668 CTATTCGGCACCAGCGACGA 62.608 60.000 0.00 0.00 43.41 4.20
338 339 2.202690 TATTCGGCACCAGCGACG 60.203 61.111 0.00 0.00 43.41 5.12
339 340 1.883084 CCTATTCGGCACCAGCGAC 60.883 63.158 0.00 0.00 43.41 5.19
340 341 2.055633 TCCTATTCGGCACCAGCGA 61.056 57.895 0.00 0.00 43.41 4.93
341 342 1.883084 GTCCTATTCGGCACCAGCG 60.883 63.158 0.00 0.00 43.41 5.18
342 343 1.523938 GGTCCTATTCGGCACCAGC 60.524 63.158 0.00 0.00 41.10 4.85
343 344 0.105039 GAGGTCCTATTCGGCACCAG 59.895 60.000 0.00 0.00 36.19 4.00
344 345 1.335132 GGAGGTCCTATTCGGCACCA 61.335 60.000 0.00 0.00 36.19 4.17
345 346 1.446366 GGAGGTCCTATTCGGCACC 59.554 63.158 0.00 0.00 34.83 5.01
346 347 1.446366 GGGAGGTCCTATTCGGCAC 59.554 63.158 0.00 0.00 35.95 5.01
347 348 1.764854 GGGGAGGTCCTATTCGGCA 60.765 63.158 0.00 0.00 35.95 5.69
348 349 1.459730 AGGGGAGGTCCTATTCGGC 60.460 63.158 0.00 0.00 34.92 5.54
349 350 1.759459 GCAGGGGAGGTCCTATTCGG 61.759 65.000 0.00 0.00 34.92 4.30
350 351 1.749033 GCAGGGGAGGTCCTATTCG 59.251 63.158 0.00 0.00 34.92 3.34
351 352 1.419720 GGGCAGGGGAGGTCCTATTC 61.420 65.000 0.00 0.00 34.92 1.75
352 353 1.386057 GGGCAGGGGAGGTCCTATT 60.386 63.158 0.00 0.00 34.92 1.73
353 354 2.290745 GGGCAGGGGAGGTCCTAT 59.709 66.667 0.00 0.00 34.92 2.57
354 355 3.289211 TGGGCAGGGGAGGTCCTA 61.289 66.667 0.00 0.00 34.92 2.94
357 358 2.840753 TTTGTGGGCAGGGGAGGTC 61.841 63.158 0.00 0.00 0.00 3.85
358 359 2.780924 TTTGTGGGCAGGGGAGGT 60.781 61.111 0.00 0.00 0.00 3.85
359 360 2.283173 GTTTGTGGGCAGGGGAGG 60.283 66.667 0.00 0.00 0.00 4.30
360 361 2.283173 GGTTTGTGGGCAGGGGAG 60.283 66.667 0.00 0.00 0.00 4.30
361 362 1.955458 AAAGGTTTGTGGGCAGGGGA 61.955 55.000 0.00 0.00 0.00 4.81
362 363 1.053835 AAAAGGTTTGTGGGCAGGGG 61.054 55.000 0.00 0.00 0.00 4.79
363 364 1.710816 TAAAAGGTTTGTGGGCAGGG 58.289 50.000 0.00 0.00 0.00 4.45
364 365 3.323403 TGAATAAAAGGTTTGTGGGCAGG 59.677 43.478 0.00 0.00 0.00 4.85
365 366 4.280677 TCTGAATAAAAGGTTTGTGGGCAG 59.719 41.667 0.00 0.00 0.00 4.85
366 367 4.219115 TCTGAATAAAAGGTTTGTGGGCA 58.781 39.130 0.00 0.00 0.00 5.36
367 368 4.864704 TCTGAATAAAAGGTTTGTGGGC 57.135 40.909 0.00 0.00 0.00 5.36
368 369 9.203421 GTATTTTCTGAATAAAAGGTTTGTGGG 57.797 33.333 0.00 0.00 32.20 4.61
369 370 8.911662 CGTATTTTCTGAATAAAAGGTTTGTGG 58.088 33.333 0.00 0.00 32.20 4.17
370 371 8.424731 GCGTATTTTCTGAATAAAAGGTTTGTG 58.575 33.333 0.00 0.00 32.20 3.33
371 372 8.138712 TGCGTATTTTCTGAATAAAAGGTTTGT 58.861 29.630 0.00 0.00 32.20 2.83
372 373 8.514136 TGCGTATTTTCTGAATAAAAGGTTTG 57.486 30.769 0.00 0.00 32.20 2.93
373 374 9.139174 CATGCGTATTTTCTGAATAAAAGGTTT 57.861 29.630 0.00 0.00 32.20 3.27
374 375 8.303876 ACATGCGTATTTTCTGAATAAAAGGTT 58.696 29.630 0.00 0.00 32.20 3.50
375 376 7.826690 ACATGCGTATTTTCTGAATAAAAGGT 58.173 30.769 0.00 0.00 32.20 3.50
376 377 8.687824 AACATGCGTATTTTCTGAATAAAAGG 57.312 30.769 0.00 0.00 32.20 3.11
438 439 3.513515 CCAGCCCAGCCTAAACATAAAAA 59.486 43.478 0.00 0.00 0.00 1.94
443 444 1.307647 CCCAGCCCAGCCTAAACAT 59.692 57.895 0.00 0.00 0.00 2.71
445 446 2.755876 GCCCAGCCCAGCCTAAAC 60.756 66.667 0.00 0.00 0.00 2.01
446 447 2.547595 AAGCCCAGCCCAGCCTAAA 61.548 57.895 0.00 0.00 0.00 1.85
447 448 2.941025 AAGCCCAGCCCAGCCTAA 60.941 61.111 0.00 0.00 0.00 2.69
491 500 2.047655 TCGGACGGGCATCACAAC 60.048 61.111 0.00 0.00 0.00 3.32
561 570 2.128035 CTGAAATATCGTGCCGACTCC 58.872 52.381 0.00 0.00 39.18 3.85
562 571 2.128035 CCTGAAATATCGTGCCGACTC 58.872 52.381 0.00 0.00 39.18 3.36
588 597 5.371115 TTTAGCAAAACGAAGAAGGGATG 57.629 39.130 0.00 0.00 0.00 3.51
589 598 6.208599 TCATTTTAGCAAAACGAAGAAGGGAT 59.791 34.615 0.00 0.00 32.37 3.85
593 602 8.427774 GGATTTCATTTTAGCAAAACGAAGAAG 58.572 33.333 0.00 0.00 32.37 2.85
600 609 8.607441 AAGAAGGGATTTCATTTTAGCAAAAC 57.393 30.769 0.00 0.00 38.31 2.43
612 621 5.009610 CGTGAAAAAGGAAGAAGGGATTTCA 59.990 40.000 0.00 0.00 38.31 2.69
650 659 3.885358 AGAAAACCGTTCATTTCTTCGC 58.115 40.909 0.00 0.00 41.79 4.70
824 834 0.762082 TGCTTTTGTGGCCATGGGAA 60.762 50.000 9.72 0.82 0.00 3.97
825 835 0.762082 TTGCTTTTGTGGCCATGGGA 60.762 50.000 9.72 0.00 0.00 4.37
826 836 0.108207 TTTGCTTTTGTGGCCATGGG 59.892 50.000 9.72 0.00 0.00 4.00
878 892 1.254026 CGGCGTTATATGGAGGAGGA 58.746 55.000 0.00 0.00 0.00 3.71
905 919 1.616374 TGTTCCGTATCTGCTGTGTGA 59.384 47.619 0.00 0.00 0.00 3.58
921 935 0.874390 ATGCGTGTGGTCATGTGTTC 59.126 50.000 0.00 0.00 33.51 3.18
949 963 2.047274 TACTGCGTGCCTGGCTTC 60.047 61.111 21.03 11.86 0.00 3.86
950 964 1.903877 ATCTACTGCGTGCCTGGCTT 61.904 55.000 21.03 0.00 0.00 4.35
951 965 2.303549 GATCTACTGCGTGCCTGGCT 62.304 60.000 21.03 0.00 0.00 4.75
952 966 1.884926 GATCTACTGCGTGCCTGGC 60.885 63.158 12.87 12.87 0.00 4.85
953 967 1.227380 GGATCTACTGCGTGCCTGG 60.227 63.158 0.00 0.00 0.00 4.45
954 968 1.227380 GGGATCTACTGCGTGCCTG 60.227 63.158 0.00 0.00 0.00 4.85
955 969 1.680522 CTGGGATCTACTGCGTGCCT 61.681 60.000 0.00 0.00 0.00 4.75
956 970 1.227380 CTGGGATCTACTGCGTGCC 60.227 63.158 0.00 0.00 0.00 5.01
957 971 0.528684 GTCTGGGATCTACTGCGTGC 60.529 60.000 0.00 0.00 0.00 5.34
958 972 0.103208 GGTCTGGGATCTACTGCGTG 59.897 60.000 0.00 0.00 0.00 5.34
959 973 0.324368 TGGTCTGGGATCTACTGCGT 60.324 55.000 0.00 0.00 0.00 5.24
960 974 0.103208 GTGGTCTGGGATCTACTGCG 59.897 60.000 0.00 0.00 0.00 5.18
961 975 1.134670 GTGTGGTCTGGGATCTACTGC 60.135 57.143 0.00 0.00 0.00 4.40
962 976 1.135139 CGTGTGGTCTGGGATCTACTG 59.865 57.143 0.00 0.00 0.00 2.74
963 977 1.272536 ACGTGTGGTCTGGGATCTACT 60.273 52.381 0.00 0.00 0.00 2.57
964 978 1.134560 GACGTGTGGTCTGGGATCTAC 59.865 57.143 0.00 0.00 42.62 2.59
965 979 1.471119 GACGTGTGGTCTGGGATCTA 58.529 55.000 0.00 0.00 42.62 1.98
966 980 1.258445 GGACGTGTGGTCTGGGATCT 61.258 60.000 0.00 0.00 45.35 2.75
967 981 1.218316 GGACGTGTGGTCTGGGATC 59.782 63.158 0.00 0.00 45.35 3.36
1086 1121 1.695242 TGCCACGAAAGGTAGAGGAAA 59.305 47.619 0.00 0.00 0.00 3.13
1098 1133 0.904649 ACTCATCCATCTGCCACGAA 59.095 50.000 0.00 0.00 0.00 3.85
1326 1361 0.467474 AGTCGGACCTGTGAGACACA 60.467 55.000 4.14 4.56 42.45 3.72
1393 1428 4.499183 GGGATACATAGCTTTCCATCGAG 58.501 47.826 0.00 0.00 39.74 4.04
1394 1429 3.056821 CGGGATACATAGCTTTCCATCGA 60.057 47.826 0.00 0.00 39.74 3.59
1395 1430 3.056821 TCGGGATACATAGCTTTCCATCG 60.057 47.826 0.00 0.00 39.74 3.84
1396 1431 4.537135 TCGGGATACATAGCTTTCCATC 57.463 45.455 0.00 0.00 39.74 3.51
1397 1432 4.836825 CATCGGGATACATAGCTTTCCAT 58.163 43.478 0.00 0.00 39.74 3.41
1398 1433 3.557054 GCATCGGGATACATAGCTTTCCA 60.557 47.826 0.00 0.00 39.74 3.53
1450 1485 9.906660 TGCAAAAACACCTTCTACTAATTTATG 57.093 29.630 0.00 0.00 0.00 1.90
1547 1585 3.083349 CCATGCTCCCGACCTCCA 61.083 66.667 0.00 0.00 0.00 3.86
1549 1587 2.801631 CCTCCATGCTCCCGACCTC 61.802 68.421 0.00 0.00 0.00 3.85
1550 1588 2.765807 CCTCCATGCTCCCGACCT 60.766 66.667 0.00 0.00 0.00 3.85
1552 1590 4.554036 GGCCTCCATGCTCCCGAC 62.554 72.222 0.00 0.00 0.00 4.79
1553 1591 4.804420 AGGCCTCCATGCTCCCGA 62.804 66.667 0.00 0.00 0.00 5.14
1554 1592 3.764160 GAAGGCCTCCATGCTCCCG 62.764 68.421 5.23 0.00 0.00 5.14
1555 1593 2.194326 GAAGGCCTCCATGCTCCC 59.806 66.667 5.23 0.00 0.00 4.30
1557 1595 1.407979 CATTTGAAGGCCTCCATGCTC 59.592 52.381 5.23 0.00 0.00 4.26
1558 1596 1.481871 CATTTGAAGGCCTCCATGCT 58.518 50.000 5.23 0.00 0.00 3.79
1559 1597 0.179092 GCATTTGAAGGCCTCCATGC 60.179 55.000 5.23 13.88 34.35 4.06
1636 1674 5.240623 ACTCTGCCTTCATCTATCTTCGTAG 59.759 44.000 0.00 0.00 0.00 3.51
1637 1675 5.009110 CACTCTGCCTTCATCTATCTTCGTA 59.991 44.000 0.00 0.00 0.00 3.43
1638 1676 3.957497 ACTCTGCCTTCATCTATCTTCGT 59.043 43.478 0.00 0.00 0.00 3.85
1639 1677 4.297510 CACTCTGCCTTCATCTATCTTCG 58.702 47.826 0.00 0.00 0.00 3.79
1641 1679 3.453717 TGCACTCTGCCTTCATCTATCTT 59.546 43.478 0.00 0.00 44.23 2.40
1792 1872 5.006455 TGACGCGTGTGTGTAAAATTTTAGA 59.994 36.000 20.70 7.28 39.39 2.10
1885 1966 2.397044 TTCATGGAGGCCCACTTTTT 57.603 45.000 0.00 0.00 46.98 1.94
1886 1967 2.158325 TCTTTCATGGAGGCCCACTTTT 60.158 45.455 0.00 0.00 46.98 2.27
1892 1973 0.744771 GTCGTCTTTCATGGAGGCCC 60.745 60.000 0.00 0.00 0.00 5.80
1914 1995 4.952335 GGATGGAGGAGAATGACATTTTGT 59.048 41.667 1.39 0.00 0.00 2.83
2037 2119 6.456988 CGCTTTCACCCAGACTATAAACATTC 60.457 42.308 0.00 0.00 0.00 2.67
2098 2180 6.239714 CCATAGATCCCCAATAATAGATCCCG 60.240 46.154 0.00 0.00 36.59 5.14
2135 2218 3.641906 CCCTCTAATCGATGTACAACCCT 59.358 47.826 0.00 0.00 0.00 4.34
2149 2232 7.125391 TCAAGCCAAATAATTGTCCCTCTAAT 58.875 34.615 0.00 0.00 34.60 1.73
2150 2233 6.489603 TCAAGCCAAATAATTGTCCCTCTAA 58.510 36.000 0.00 0.00 34.60 2.10
2282 2365 2.035961 TGAACGGTATCCAGCATCTAGC 59.964 50.000 0.00 0.00 46.19 3.42
2285 2368 3.470709 CATTGAACGGTATCCAGCATCT 58.529 45.455 0.00 0.00 0.00 2.90
2327 2412 0.171007 CCACCGCAATGCTAAACAGG 59.829 55.000 2.94 0.00 0.00 4.00
2334 2419 1.902918 TTGAAGCCACCGCAATGCT 60.903 52.632 2.94 0.00 37.52 3.79
2341 2426 3.726517 CTGCCGTTGAAGCCACCG 61.727 66.667 0.00 0.00 0.00 4.94
2348 2433 1.344065 TAGACCCTTCTGCCGTTGAA 58.656 50.000 0.00 0.00 32.75 2.69
2422 2507 2.011947 TGCACATGCTGTAGAATCTGC 58.988 47.619 5.31 0.00 42.66 4.26
2462 2547 3.030652 CACCAACCGGTCAAGCAC 58.969 61.111 8.04 0.00 44.71 4.40
2467 2552 2.112297 GGAAGCACCAACCGGTCA 59.888 61.111 8.04 0.00 44.71 4.02
2532 2617 4.293648 CCCTGACCGTGCGTCACA 62.294 66.667 9.95 0.00 46.80 3.58
2637 4924 9.874205 CACACAACCATCTTTATTGGATTATTT 57.126 29.630 0.00 0.00 37.69 1.40
2644 4931 4.517952 TGCACACAACCATCTTTATTGG 57.482 40.909 0.00 0.00 40.26 3.16
2672 4959 1.668826 TACCCCCTGACTTCTGCATT 58.331 50.000 0.00 0.00 0.00 3.56
2684 4971 4.479156 TTGAAAACAAGGATTACCCCCT 57.521 40.909 0.00 0.00 36.73 4.79
2956 5243 6.329496 TGGAAGTCATTTCACTTGTTTTCAC 58.671 36.000 0.00 0.00 36.71 3.18
2982 5269 4.564821 CCCTTCCTCAAATAAGACCACGAA 60.565 45.833 0.00 0.00 0.00 3.85
3048 5335 4.087182 TGTGAGACGGAGGAGAATTTAGT 58.913 43.478 0.00 0.00 0.00 2.24
3063 5350 9.495754 GCTTTGATATTGATTTACTTGTGAGAC 57.504 33.333 0.00 0.00 0.00 3.36
3209 5496 0.821301 TGCGCCAGAATCAAACACCA 60.821 50.000 4.18 0.00 0.00 4.17
3224 5511 2.668550 AACCTTTCCCGACTGCGC 60.669 61.111 0.00 0.00 35.83 6.09
3225 5512 2.966309 GCAACCTTTCCCGACTGCG 61.966 63.158 0.00 0.00 37.24 5.18
3226 5513 1.244019 ATGCAACCTTTCCCGACTGC 61.244 55.000 0.00 0.00 0.00 4.40
3234 5521 6.828785 TCCTCCTAATAGAAATGCAACCTTTC 59.171 38.462 3.53 3.53 33.69 2.62
3276 5563 9.574516 ACTTGGTATTAAAGATTCTTGTGACTT 57.425 29.630 0.00 0.00 0.00 3.01
3302 5590 3.311110 AGCCCGTGCCTTCTCGAA 61.311 61.111 0.00 0.00 38.69 3.71
3338 5626 4.898861 ACAGTTACAACATTGGACCCATTT 59.101 37.500 0.00 0.00 0.00 2.32
3378 5666 2.519013 ACCATCTTTCTGGCCTTTGAC 58.481 47.619 3.32 0.00 40.15 3.18
3399 5687 3.732774 CGCATAGCAAGTGCAATCATGTT 60.733 43.478 6.00 0.00 45.16 2.71
3445 5733 4.766891 TCCTTTCTCTTGGCTTTTATGGTG 59.233 41.667 0.00 0.00 0.00 4.17
3449 5737 8.309656 CAATTCTTCCTTTCTCTTGGCTTTTAT 58.690 33.333 0.00 0.00 0.00 1.40
3450 5738 7.505585 TCAATTCTTCCTTTCTCTTGGCTTTTA 59.494 33.333 0.00 0.00 0.00 1.52
3491 5782 1.333308 CTTGCACCACGTTGTTGATCA 59.667 47.619 0.00 0.00 0.00 2.92
3492 5783 1.601903 TCTTGCACCACGTTGTTGATC 59.398 47.619 0.00 0.00 0.00 2.92
3493 5784 1.333619 GTCTTGCACCACGTTGTTGAT 59.666 47.619 0.00 0.00 0.00 2.57
3555 5846 3.998913 TGCCCTATCAACAAGTGATCA 57.001 42.857 0.00 0.00 44.01 2.92
3558 5849 3.719268 ACATGCCCTATCAACAAGTGA 57.281 42.857 0.00 0.00 41.67 3.41
3599 5890 6.013379 ACATCACCCTTACATCAAGAAGAAGA 60.013 38.462 0.00 0.00 36.22 2.87
3600 5891 6.093219 CACATCACCCTTACATCAAGAAGAAG 59.907 42.308 0.00 0.00 36.22 2.85
3601 5892 5.939883 CACATCACCCTTACATCAAGAAGAA 59.060 40.000 0.00 0.00 36.22 2.52
3602 5893 5.248248 TCACATCACCCTTACATCAAGAAGA 59.752 40.000 0.00 0.00 36.22 2.87
3609 5903 5.674525 TCTGAATCACATCACCCTTACATC 58.325 41.667 0.00 0.00 0.00 3.06
3694 5988 6.367969 CACACTAACACTTCTACCGCTATTTT 59.632 38.462 0.00 0.00 0.00 1.82
3724 6018 6.964807 TCATGCTAAGTCATTTAATGCCAT 57.035 33.333 0.00 0.00 0.00 4.40
3755 6049 2.620251 TAGCGCCATCTAGCATTTGT 57.380 45.000 2.29 0.00 35.48 2.83
3765 6059 5.163754 ACTCACAGTTTTAAATAGCGCCATC 60.164 40.000 2.29 0.00 0.00 3.51
3771 6065 7.817962 TCACTCCTACTCACAGTTTTAAATAGC 59.182 37.037 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.