Multiple sequence alignment - TraesCS3B01G151200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G151200 chr3B 100.000 6206 0 0 1 6206 142725738 142719533 0.000000e+00 11461.0
1 TraesCS3B01G151200 chr3B 95.082 122 5 1 5112 5233 637086326 637086446 2.280000e-44 191.0
2 TraesCS3B01G151200 chr3B 91.270 126 11 0 4721 4846 142720988 142720863 8.270000e-39 172.0
3 TraesCS3B01G151200 chr3B 91.270 126 11 0 4751 4876 142721018 142720893 8.270000e-39 172.0
4 TraesCS3B01G151200 chr3B 98.387 62 1 0 3846 3907 142721806 142721745 6.580000e-20 110.0
5 TraesCS3B01G151200 chr3B 98.387 62 1 0 3933 3994 142721893 142721832 6.580000e-20 110.0
6 TraesCS3B01G151200 chr3A 91.825 4636 230 68 296 4876 546575421 546570880 0.000000e+00 6324.0
7 TraesCS3B01G151200 chr3A 94.796 980 35 7 5232 6206 546570516 546569548 0.000000e+00 1513.0
8 TraesCS3B01G151200 chr3A 94.242 330 18 1 4721 5049 546571005 546570676 2.580000e-138 503.0
9 TraesCS3B01G151200 chr3A 96.552 116 3 1 5118 5233 750495656 750495542 2.280000e-44 191.0
10 TraesCS3B01G151200 chr3A 91.270 126 11 0 4721 4846 546570975 546570850 8.270000e-39 172.0
11 TraesCS3B01G151200 chr3A 98.305 59 1 0 3935 3993 546571890 546571832 3.060000e-18 104.0
12 TraesCS3B01G151200 chr3D 93.652 4206 187 36 936 5116 93479082 93483232 0.000000e+00 6215.0
13 TraesCS3B01G151200 chr3D 95.040 988 29 11 5230 6206 93483230 93484208 0.000000e+00 1535.0
14 TraesCS3B01G151200 chr3D 85.345 580 68 11 3 574 93476444 93477014 8.960000e-163 584.0
15 TraesCS3B01G151200 chr3D 90.244 246 14 9 571 813 93478661 93478899 4.670000e-81 313.0
16 TraesCS3B01G151200 chr3D 98.387 62 1 0 3933 3994 93481978 93482039 6.580000e-20 110.0
17 TraesCS3B01G151200 chr4A 79.463 633 107 19 3005 3627 115788293 115788912 1.600000e-115 427.0
18 TraesCS3B01G151200 chr4A 93.600 125 7 1 5114 5238 658949114 658949237 1.060000e-42 185.0
19 TraesCS3B01G151200 chr4D 78.517 661 121 17 3005 3656 349190346 349189698 1.240000e-111 414.0
20 TraesCS3B01G151200 chr4B 75.793 851 183 17 3005 3845 431796115 431795278 5.790000e-110 409.0
21 TraesCS3B01G151200 chr4B 94.309 123 6 1 5112 5234 584118790 584118911 2.950000e-43 187.0
22 TraesCS3B01G151200 chr5B 99.187 123 1 0 5112 5234 224621522 224621400 8.100000e-54 222.0
23 TraesCS3B01G151200 chr2B 96.694 121 4 0 5113 5233 135918436 135918316 1.050000e-47 202.0
24 TraesCS3B01G151200 chr6D 95.763 118 5 0 5115 5232 12017325 12017208 2.280000e-44 191.0
25 TraesCS3B01G151200 chr6D 93.651 126 7 1 5114 5239 108860648 108860772 2.950000e-43 187.0
26 TraesCS3B01G151200 chr1D 93.548 124 8 0 5110 5233 458700187 458700310 1.060000e-42 185.0
27 TraesCS3B01G151200 chr1D 82.105 95 11 4 3322 3413 53965026 53964935 6.670000e-10 76.8
28 TraesCS3B01G151200 chr5A 74.710 431 89 17 3424 3844 678082778 678082358 2.300000e-39 174.0
29 TraesCS3B01G151200 chr5A 90.000 70 7 0 3372 3441 8904690 8904621 2.380000e-14 91.6
30 TraesCS3B01G151200 chr5D 90.000 70 7 0 3372 3441 10775872 10775941 2.380000e-14 91.6
31 TraesCS3B01G151200 chr1A 82.105 95 11 4 3322 3413 53455178 53455087 6.670000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G151200 chr3B 142719533 142725738 6205 True 11461.0 11461 100.0000 1 6206 1 chr3B.!!$R1 6205
1 TraesCS3B01G151200 chr3A 546569548 546575421 5873 True 1723.2 6324 94.0876 296 6206 5 chr3A.!!$R2 5910
2 TraesCS3B01G151200 chr3D 93476444 93484208 7764 False 1751.4 6215 92.5336 3 6206 5 chr3D.!!$F1 6203
3 TraesCS3B01G151200 chr4A 115788293 115788912 619 False 427.0 427 79.4630 3005 3627 1 chr4A.!!$F1 622
4 TraesCS3B01G151200 chr4D 349189698 349190346 648 True 414.0 414 78.5170 3005 3656 1 chr4D.!!$R1 651
5 TraesCS3B01G151200 chr4B 431795278 431796115 837 True 409.0 409 75.7930 3005 3845 1 chr4B.!!$R1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
916 2627 0.033781 GCAGCAACCCATTTCAGCAA 59.966 50.0 0.00 0.00 0.00 3.91 F
2144 3929 0.179081 GAATGGACTACCGACCAGCC 60.179 60.0 0.00 0.00 38.33 4.85 F
2281 4069 0.179097 GAGGGAGCTCGTGATCAACC 60.179 60.0 7.83 0.04 0.00 3.77 F
2771 4565 0.253394 AGGAAGAAGAAGGGGGAGGG 60.253 60.0 0.00 0.00 0.00 4.30 F
4105 5914 1.028330 CCGCAGCAGATGAACCACAT 61.028 55.0 0.00 0.00 42.47 3.21 F
4804 6615 0.684479 TCATAGGGCTGCGACTGTCT 60.684 55.0 6.21 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2686 4474 0.606401 CCACACACGGAGCCAAGAAT 60.606 55.000 0.00 0.00 0.00 2.40 R
4020 5829 0.736636 AATCGTCATCGTCGGCTACA 59.263 50.000 0.00 0.00 38.33 2.74 R
4177 5987 0.693049 GTCCTTGAAAGCTGGAGGGA 59.307 55.000 0.00 0.00 0.00 4.20 R
4469 6280 1.140852 CAGTGTTCACCCAGTGGAAGA 59.859 52.381 11.95 4.96 33.87 2.87 R
5114 7054 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
5612 7557 0.110823 CCGCGAGTTGTCTTTTTCCG 60.111 55.000 8.23 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.009774 CACGATCAAGGTTAAGCCAGG 58.990 52.381 0.00 0.00 40.61 4.45
30 31 0.252103 AGGTTAAGCCAGGAGACGGA 60.252 55.000 0.00 0.00 40.61 4.69
31 32 0.611714 GGTTAAGCCAGGAGACGGAA 59.388 55.000 0.00 0.00 37.17 4.30
33 34 1.275573 GTTAAGCCAGGAGACGGAACT 59.724 52.381 0.00 0.00 0.00 3.01
45 46 2.158813 AGACGGAACTTGAAGGCTTTCA 60.159 45.455 7.24 7.24 41.44 2.69
53 54 3.117888 ACTTGAAGGCTTTCAGGAAGTCA 60.118 43.478 24.49 2.50 43.76 3.41
55 56 3.897239 TGAAGGCTTTCAGGAAGTCAAA 58.103 40.909 7.24 0.00 42.56 2.69
73 74 7.787725 AGTCAAACTTGAGTACAACTAAAGG 57.212 36.000 8.65 0.00 40.35 3.11
84 85 0.466555 AACTAAAGGCAACCCACGCA 60.467 50.000 0.00 0.00 37.17 5.24
101 102 1.601419 GCATGTGGCTGCATTGGACT 61.601 55.000 0.50 0.00 41.87 3.85
106 107 0.329261 TGGCTGCATTGGACTAGCTT 59.671 50.000 0.50 0.00 36.45 3.74
108 109 0.654683 GCTGCATTGGACTAGCTTCG 59.345 55.000 0.00 0.00 33.53 3.79
112 113 1.293924 CATTGGACTAGCTTCGCCAG 58.706 55.000 0.00 0.00 0.00 4.85
113 114 1.134699 CATTGGACTAGCTTCGCCAGA 60.135 52.381 0.00 0.00 0.00 3.86
122 123 5.488341 ACTAGCTTCGCCAGAAAGATAAAA 58.512 37.500 0.00 0.00 35.71 1.52
130 131 6.976088 TCGCCAGAAAGATAAAATTGTCAAA 58.024 32.000 0.00 0.00 0.00 2.69
145 146 9.679661 AAAATTGTCAAAAACAGAATACCCTTT 57.320 25.926 0.00 0.00 39.58 3.11
146 147 9.679661 AAATTGTCAAAAACAGAATACCCTTTT 57.320 25.926 0.00 0.00 39.58 2.27
165 166 4.510167 TTTGGGAAATCTCATCTCCTCC 57.490 45.455 0.00 0.00 0.00 4.30
169 170 2.043227 GAAATCTCATCTCCTCCGGGT 58.957 52.381 0.00 0.00 0.00 5.28
173 174 0.106167 CTCATCTCCTCCGGGTGGTA 60.106 60.000 14.46 5.39 36.30 3.25
198 199 3.913107 GGCATGAGGGCTAGGGAT 58.087 61.111 0.00 0.00 39.42 3.85
201 202 1.352083 GCATGAGGGCTAGGGATGTA 58.648 55.000 0.00 0.00 0.00 2.29
214 215 3.956744 AGGGATGTAAAGTCAAAGCCTC 58.043 45.455 0.00 0.00 0.00 4.70
215 216 2.678336 GGGATGTAAAGTCAAAGCCTCG 59.322 50.000 0.00 0.00 0.00 4.63
216 217 3.596214 GGATGTAAAGTCAAAGCCTCGA 58.404 45.455 0.00 0.00 0.00 4.04
243 244 6.787085 GCTACTAGCTTTGAGAGAAAAACA 57.213 37.500 0.00 0.00 38.45 2.83
244 245 7.371126 GCTACTAGCTTTGAGAGAAAAACAT 57.629 36.000 0.00 0.00 38.45 2.71
259 261 6.340522 AGAAAAACATTTATACCATGCAGGC 58.659 36.000 0.00 0.00 43.14 4.85
261 263 3.207265 ACATTTATACCATGCAGGCGA 57.793 42.857 0.00 0.00 43.14 5.54
265 267 5.945784 ACATTTATACCATGCAGGCGATATT 59.054 36.000 0.00 0.00 43.14 1.28
270 272 2.305635 ACCATGCAGGCGATATTCCATA 59.694 45.455 0.00 0.00 43.14 2.74
322 328 9.181061 TGAGATTCATGCTATTTTCAGAATTGA 57.819 29.630 0.00 0.00 0.00 2.57
347 353 8.450578 ACAGATTTTGTCTTGTTTCATAGTGA 57.549 30.769 0.00 0.00 33.87 3.41
348 354 8.345565 ACAGATTTTGTCTTGTTTCATAGTGAC 58.654 33.333 0.00 0.00 33.87 3.67
351 357 7.624360 TTTTGTCTTGTTTCATAGTGACACT 57.376 32.000 13.68 13.68 34.73 3.55
352 358 6.603237 TTGTCTTGTTTCATAGTGACACTG 57.397 37.500 18.58 3.35 34.73 3.66
353 359 5.056480 TGTCTTGTTTCATAGTGACACTGG 58.944 41.667 18.58 10.22 29.03 4.00
354 360 5.057149 GTCTTGTTTCATAGTGACACTGGT 58.943 41.667 18.58 3.97 29.03 4.00
355 361 5.527582 GTCTTGTTTCATAGTGACACTGGTT 59.472 40.000 18.58 0.12 29.03 3.67
359 365 6.791303 TGTTTCATAGTGACACTGGTTTTTC 58.209 36.000 18.58 4.32 29.03 2.29
383 392 4.822036 TTCTTGTTTCAACATGTACCGG 57.178 40.909 0.00 0.00 38.95 5.28
401 410 5.560966 ACCGGAATGTTTCATTGTGTATC 57.439 39.130 9.46 0.00 0.00 2.24
427 436 7.010183 CGTTGTGTACTAGTAAATCCAATCAGG 59.990 40.741 3.61 0.00 39.47 3.86
446 456 5.869579 TCAGGAAGAAGTGCACTCTTATTT 58.130 37.500 21.95 10.12 30.55 1.40
447 457 5.702670 TCAGGAAGAAGTGCACTCTTATTTG 59.297 40.000 21.95 19.30 30.55 2.32
449 459 5.703130 AGGAAGAAGTGCACTCTTATTTGTC 59.297 40.000 21.95 11.32 30.55 3.18
450 460 5.703130 GGAAGAAGTGCACTCTTATTTGTCT 59.297 40.000 21.95 13.59 30.55 3.41
451 461 6.348050 GGAAGAAGTGCACTCTTATTTGTCTG 60.348 42.308 21.95 0.00 30.55 3.51
452 462 5.615289 AGAAGTGCACTCTTATTTGTCTGT 58.385 37.500 21.95 0.00 0.00 3.41
453 463 6.759272 AGAAGTGCACTCTTATTTGTCTGTA 58.241 36.000 21.95 0.00 0.00 2.74
454 464 6.647067 AGAAGTGCACTCTTATTTGTCTGTAC 59.353 38.462 21.95 0.00 0.00 2.90
455 465 5.853936 AGTGCACTCTTATTTGTCTGTACA 58.146 37.500 15.25 0.00 0.00 2.90
456 466 5.696724 AGTGCACTCTTATTTGTCTGTACAC 59.303 40.000 15.25 0.00 34.61 2.90
457 467 4.684242 TGCACTCTTATTTGTCTGTACACG 59.316 41.667 0.00 0.00 34.61 4.49
583 2243 2.290641 AGCACAAGTCTTAAAGCAACGG 59.709 45.455 6.04 0.00 0.00 4.44
591 2251 1.193874 CTTAAAGCAACGGTGGTCGAC 59.806 52.381 5.22 7.13 42.43 4.20
593 2253 1.157870 AAAGCAACGGTGGTCGACAG 61.158 55.000 18.91 7.89 42.43 3.51
626 2287 3.030291 AGATGTCTCTTGCAGGGTAGAG 58.970 50.000 6.78 6.78 39.38 2.43
664 2357 7.706281 AGTAGCATTGACGATTGAAAGATAG 57.294 36.000 0.00 0.00 0.00 2.08
665 2358 5.998454 AGCATTGACGATTGAAAGATAGG 57.002 39.130 0.00 0.00 0.00 2.57
667 2360 5.757320 AGCATTGACGATTGAAAGATAGGAG 59.243 40.000 0.00 0.00 0.00 3.69
668 2361 5.525378 GCATTGACGATTGAAAGATAGGAGT 59.475 40.000 0.00 0.00 0.00 3.85
670 2363 7.386299 GCATTGACGATTGAAAGATAGGAGTAT 59.614 37.037 0.00 0.00 0.00 2.12
671 2364 8.706936 CATTGACGATTGAAAGATAGGAGTATG 58.293 37.037 0.00 0.00 0.00 2.39
672 2365 7.348080 TGACGATTGAAAGATAGGAGTATGT 57.652 36.000 0.00 0.00 0.00 2.29
676 2369 8.692710 ACGATTGAAAGATAGGAGTATGTAACA 58.307 33.333 0.00 0.00 0.00 2.41
679 2372 7.727578 TGAAAGATAGGAGTATGTAACACCA 57.272 36.000 0.00 0.00 41.03 4.17
681 2374 8.598916 TGAAAGATAGGAGTATGTAACACCAAA 58.401 33.333 0.00 0.00 41.03 3.28
682 2375 8.788325 AAAGATAGGAGTATGTAACACCAAAC 57.212 34.615 0.00 0.00 41.03 2.93
683 2376 6.570692 AGATAGGAGTATGTAACACCAAACG 58.429 40.000 0.00 0.00 41.03 3.60
684 2377 3.332034 AGGAGTATGTAACACCAAACGC 58.668 45.455 0.00 0.00 41.03 4.84
685 2378 3.007614 AGGAGTATGTAACACCAAACGCT 59.992 43.478 0.00 0.00 41.03 5.07
686 2379 3.124636 GGAGTATGTAACACCAAACGCTG 59.875 47.826 0.00 0.00 38.61 5.18
833 2527 4.570663 GGCGATCCGTCCCTGTCG 62.571 72.222 0.00 0.00 37.17 4.35
835 2529 4.570663 CGATCCGTCCCTGTCGCC 62.571 72.222 0.00 0.00 0.00 5.54
836 2530 3.458163 GATCCGTCCCTGTCGCCA 61.458 66.667 0.00 0.00 0.00 5.69
862 2556 1.993370 CCGTCGTGTTCTTCCTGAATC 59.007 52.381 0.00 0.00 36.99 2.52
916 2627 0.033781 GCAGCAACCCATTTCAGCAA 59.966 50.000 0.00 0.00 0.00 3.91
919 2669 1.972795 AGCAACCCATTTCAGCAACAT 59.027 42.857 0.00 0.00 0.00 2.71
940 2690 1.611851 CAGTCCAGTCCCCTGCTCT 60.612 63.158 0.00 0.00 37.38 4.09
1100 2870 3.181440 TGTGTCCTCTTCTTCCTGCAATT 60.181 43.478 0.00 0.00 0.00 2.32
1111 2888 2.751436 TGCAATTCCTGGCCTCGC 60.751 61.111 3.32 0.00 0.00 5.03
1112 2889 2.751436 GCAATTCCTGGCCTCGCA 60.751 61.111 3.32 0.00 0.00 5.10
1113 2890 2.768492 GCAATTCCTGGCCTCGCAG 61.768 63.158 3.32 0.00 0.00 5.18
1114 2891 2.439156 AATTCCTGGCCTCGCAGC 60.439 61.111 3.32 0.00 0.00 5.25
1115 2892 2.976490 AATTCCTGGCCTCGCAGCT 61.976 57.895 3.32 0.00 0.00 4.24
1116 2893 2.883267 AATTCCTGGCCTCGCAGCTC 62.883 60.000 3.32 0.00 0.00 4.09
1123 2900 2.740055 CCTCGCAGCTCACACCAC 60.740 66.667 0.00 0.00 0.00 4.16
1133 2910 4.994756 CACACCACCCCAAGGCCC 62.995 72.222 0.00 0.00 36.11 5.80
1146 2923 2.893682 AAGGCCCCGCAGATAAGCAC 62.894 60.000 0.00 0.00 0.00 4.40
1234 3011 4.874977 GCCTGGAGGTAGCGTCGC 62.875 72.222 9.80 9.80 37.57 5.19
1263 3040 0.392706 TGTCGCTCTTCTTTGGCTCA 59.607 50.000 0.00 0.00 0.00 4.26
1309 3094 1.790623 ACTTCGACGGACATGTTTTCG 59.209 47.619 14.98 14.98 0.00 3.46
1355 3140 4.509970 TCTTTTGATCGTGTGTAGGTGTTG 59.490 41.667 0.00 0.00 0.00 3.33
1359 3144 1.037493 TCGTGTGTAGGTGTTGCTCT 58.963 50.000 0.00 0.00 0.00 4.09
1365 3150 3.060602 GTGTAGGTGTTGCTCTGAGTTC 58.939 50.000 6.53 0.00 0.00 3.01
1433 3218 2.126307 CTGGAGCGTCTCGGTGTG 60.126 66.667 0.00 0.00 37.83 3.82
1677 3462 4.070552 GTGTTCTCCGCGCCCTCT 62.071 66.667 0.00 0.00 0.00 3.69
1728 3513 3.036429 GCACTTCCTCCGCCTCCAT 62.036 63.158 0.00 0.00 0.00 3.41
1766 3551 3.507009 GAGCTACGACCTCGCCGT 61.507 66.667 0.00 0.00 44.43 5.68
2072 3857 4.082523 GCTGCAGACGGCCTACCA 62.083 66.667 20.43 0.00 42.81 3.25
2133 3918 1.519719 GCTCTGGCGAGAATGGACT 59.480 57.895 0.00 0.00 39.74 3.85
2141 3926 1.100510 CGAGAATGGACTACCGACCA 58.899 55.000 0.00 0.00 39.24 4.02
2144 3929 0.179081 GAATGGACTACCGACCAGCC 60.179 60.000 0.00 0.00 38.33 4.85
2155 3943 2.444895 ACCAGCCCCTCTCCGATC 60.445 66.667 0.00 0.00 0.00 3.69
2158 3946 1.153989 CAGCCCCTCTCCGATCCTA 59.846 63.158 0.00 0.00 0.00 2.94
2159 3947 0.897863 CAGCCCCTCTCCGATCCTAG 60.898 65.000 0.00 0.00 0.00 3.02
2162 3950 1.731324 CCCCTCTCCGATCCTAGGGT 61.731 65.000 9.46 0.00 46.28 4.34
2184 3972 3.692406 GCGGTGACTCGGGAGGTT 61.692 66.667 0.00 0.00 0.00 3.50
2187 3975 2.273912 GGTGACTCGGGAGGTTCGT 61.274 63.158 0.00 0.00 0.00 3.85
2194 3982 1.000060 CTCGGGAGGTTCGTTACAACA 60.000 52.381 0.00 0.00 0.00 3.33
2281 4069 0.179097 GAGGGAGCTCGTGATCAACC 60.179 60.000 7.83 0.04 0.00 3.77
2346 4134 3.917760 GACGCGGGCTCCAGCTAT 61.918 66.667 12.47 0.00 41.70 2.97
2377 4165 0.388520 CCACTTCTGCGACATCGTCA 60.389 55.000 2.85 1.19 42.22 4.35
2380 4168 1.737196 CTTCTGCGACATCGTCAGCG 61.737 60.000 16.04 9.13 40.56 5.18
2557 4345 4.715523 CCGTCCATGTTGGCCCGT 62.716 66.667 0.00 0.00 37.47 5.28
2646 4434 2.733671 CGGCTCTGTCGTCGTCGTA 61.734 63.158 1.33 0.00 38.33 3.43
2731 4519 2.032634 GCTTTCGTGTCCATCGCCA 61.033 57.895 0.00 0.00 0.00 5.69
2764 4552 5.189180 CCATTGTCCTTAGGAAGAAGAAGG 58.811 45.833 0.98 0.02 41.03 3.46
2765 4553 4.910458 TTGTCCTTAGGAAGAAGAAGGG 57.090 45.455 0.98 0.00 40.23 3.95
2771 4565 0.253394 AGGAAGAAGAAGGGGGAGGG 60.253 60.000 0.00 0.00 0.00 4.30
2783 4589 4.026357 GGAGGGGGAGGAGGGTGT 62.026 72.222 0.00 0.00 0.00 4.16
2895 4701 2.166664 AGGATCGTCAAGCTTCACTACC 59.833 50.000 0.00 0.00 0.00 3.18
3927 5736 2.876645 CGTCAGAGAAGCGCGGTC 60.877 66.667 12.91 5.38 0.00 4.79
3994 5803 3.826754 CAGAGCTCACGCCGCCTA 61.827 66.667 17.77 0.00 36.60 3.93
4011 5820 1.173043 CTAAAACCGGCAGCATGGAA 58.827 50.000 0.00 0.00 35.86 3.53
4020 5829 1.599047 CAGCATGGAAGGAGACGGT 59.401 57.895 0.00 0.00 0.00 4.83
4026 5835 1.255667 TGGAAGGAGACGGTGTAGCC 61.256 60.000 0.00 0.00 0.00 3.93
4068 5877 1.213926 GCATCCATGAGAGGGACCTTT 59.786 52.381 0.00 0.00 37.23 3.11
4102 5911 1.375908 GTCCGCAGCAGATGAACCA 60.376 57.895 0.00 0.00 0.00 3.67
4103 5912 1.375908 TCCGCAGCAGATGAACCAC 60.376 57.895 0.00 0.00 0.00 4.16
4104 5913 1.672030 CCGCAGCAGATGAACCACA 60.672 57.895 0.00 0.00 0.00 4.17
4105 5914 1.028330 CCGCAGCAGATGAACCACAT 61.028 55.000 0.00 0.00 42.47 3.21
4106 5915 1.655484 CGCAGCAGATGAACCACATA 58.345 50.000 0.00 0.00 39.56 2.29
4108 5917 1.332997 GCAGCAGATGAACCACATAGC 59.667 52.381 0.00 0.00 39.56 2.97
4109 5918 2.915349 CAGCAGATGAACCACATAGCT 58.085 47.619 0.00 0.00 45.08 3.32
4110 5919 3.276857 CAGCAGATGAACCACATAGCTT 58.723 45.455 0.00 0.00 43.20 3.74
4112 5921 3.693085 AGCAGATGAACCACATAGCTTTG 59.307 43.478 2.27 2.27 43.20 2.77
4125 5935 6.204301 CCACATAGCTTTGTATGAGAAGATGG 59.796 42.308 9.60 0.00 34.88 3.51
4127 5937 7.281774 CACATAGCTTTGTATGAGAAGATGGTT 59.718 37.037 9.60 0.00 34.88 3.67
4169 5979 3.766051 GAGGAAAGTGGATGCTGGAAAAT 59.234 43.478 0.00 0.00 0.00 1.82
4177 5987 7.008021 AGTGGATGCTGGAAAATATTGTTTT 57.992 32.000 0.00 0.00 0.00 2.43
4206 6017 5.123979 CCAGCTTTCAAGGACAAATACTACC 59.876 44.000 0.00 0.00 0.00 3.18
4214 6025 7.398829 TCAAGGACAAATACTACCAGCATTTA 58.601 34.615 0.00 0.00 0.00 1.40
4216 6027 6.717289 AGGACAAATACTACCAGCATTTACA 58.283 36.000 0.00 0.00 0.00 2.41
4221 6032 7.231722 ACAAATACTACCAGCATTTACAACCAA 59.768 33.333 0.00 0.00 0.00 3.67
4222 6033 7.954666 AATACTACCAGCATTTACAACCAAT 57.045 32.000 0.00 0.00 0.00 3.16
4223 6034 5.643379 ACTACCAGCATTTACAACCAATG 57.357 39.130 0.00 0.00 35.12 2.82
4224 6035 5.076873 ACTACCAGCATTTACAACCAATGT 58.923 37.500 0.00 0.00 46.36 2.71
4225 6036 6.242396 ACTACCAGCATTTACAACCAATGTA 58.758 36.000 0.00 0.00 43.63 2.29
4233 6044 5.804692 TTTACAACCAATGTATAGCACGG 57.195 39.130 0.00 0.00 43.84 4.94
4235 6046 3.006940 ACAACCAATGTATAGCACGGTG 58.993 45.455 3.15 3.15 41.63 4.94
4250 6061 4.631813 AGCACGGTGAAGATGAGAAATTAC 59.368 41.667 13.29 0.00 0.00 1.89
4251 6062 4.631813 GCACGGTGAAGATGAGAAATTACT 59.368 41.667 13.29 0.00 0.00 2.24
4252 6063 5.810587 GCACGGTGAAGATGAGAAATTACTA 59.189 40.000 13.29 0.00 0.00 1.82
4254 6065 7.464710 GCACGGTGAAGATGAGAAATTACTAAG 60.465 40.741 13.29 0.00 0.00 2.18
4255 6066 6.535508 ACGGTGAAGATGAGAAATTACTAAGC 59.464 38.462 0.00 0.00 0.00 3.09
4256 6067 6.535150 CGGTGAAGATGAGAAATTACTAAGCA 59.465 38.462 0.00 0.00 0.00 3.91
4257 6068 7.464710 CGGTGAAGATGAGAAATTACTAAGCAC 60.465 40.741 0.00 0.00 0.00 4.40
4275 6086 9.023962 ACTAAGCACAAAAGATTATTTGATGGA 57.976 29.630 6.76 0.00 41.73 3.41
4276 6087 9.859427 CTAAGCACAAAAGATTATTTGATGGAA 57.141 29.630 6.76 0.00 41.73 3.53
4278 6089 8.712285 AGCACAAAAGATTATTTGATGGAATG 57.288 30.769 6.76 0.00 41.73 2.67
4279 6090 8.316214 AGCACAAAAGATTATTTGATGGAATGT 58.684 29.630 6.76 0.00 41.73 2.71
4280 6091 9.585099 GCACAAAAGATTATTTGATGGAATGTA 57.415 29.630 6.76 0.00 41.73 2.29
4341 6152 6.041409 ACAGATATTATGGTCTGACTGGAGTG 59.959 42.308 7.85 0.00 43.50 3.51
4395 6206 3.470645 ACTCGTACAGGCAAGTCTTTT 57.529 42.857 0.00 0.00 0.00 2.27
4469 6280 1.539869 ACCCTCACCAGGTGATGCT 60.540 57.895 23.21 4.76 41.94 3.79
4499 6310 3.230976 GGGTGAACACTGGAAGGATTTT 58.769 45.455 4.96 0.00 39.30 1.82
4507 6318 6.078456 ACACTGGAAGGATTTTGATCCATA 57.922 37.500 8.06 0.00 43.14 2.74
4508 6319 6.493166 ACACTGGAAGGATTTTGATCCATAA 58.507 36.000 8.06 0.00 43.14 1.90
4516 6327 6.735556 AGGATTTTGATCCATAACTCAACCT 58.264 36.000 8.06 0.00 43.14 3.50
4522 6333 2.626785 TCCATAACTCAACCTCCACCA 58.373 47.619 0.00 0.00 0.00 4.17
4546 6357 3.357079 GCACTTCCACTGGGTGCG 61.357 66.667 12.14 0.00 44.91 5.34
4567 6378 1.327303 GGTGGTTGCCATTGTCTTCA 58.673 50.000 0.00 0.00 35.28 3.02
4570 6381 1.327303 GGTTGCCATTGTCTTCACCA 58.673 50.000 0.00 0.00 0.00 4.17
4804 6615 0.684479 TCATAGGGCTGCGACTGTCT 60.684 55.000 6.21 0.00 0.00 3.41
4819 6630 3.684628 TCTCGGGGGCTCCTCCTT 61.685 66.667 0.52 0.00 34.39 3.36
4870 6711 3.680786 CTGCGACTGTCACGGGGA 61.681 66.667 8.73 0.00 0.00 4.81
5061 7001 8.863086 ACTGGCATATATTCATTAGTTGCAAAT 58.137 29.630 4.23 4.23 0.00 2.32
5114 7054 6.071952 CCACATTCAGCAGGTTAGTAAAATGT 60.072 38.462 2.44 2.44 36.75 2.71
5115 7055 7.120579 CCACATTCAGCAGGTTAGTAAAATGTA 59.879 37.037 6.56 0.00 35.11 2.29
5116 7056 7.962918 CACATTCAGCAGGTTAGTAAAATGTAC 59.037 37.037 6.56 0.00 35.11 2.90
5118 7058 7.900782 TTCAGCAGGTTAGTAAAATGTACTC 57.099 36.000 0.00 0.00 0.00 2.59
5119 7059 6.403878 TCAGCAGGTTAGTAAAATGTACTCC 58.596 40.000 0.00 0.00 0.00 3.85
5120 7060 5.585047 CAGCAGGTTAGTAAAATGTACTCCC 59.415 44.000 0.00 0.00 0.00 4.30
5121 7061 5.487845 AGCAGGTTAGTAAAATGTACTCCCT 59.512 40.000 0.00 0.00 32.52 4.20
5122 7062 5.816258 GCAGGTTAGTAAAATGTACTCCCTC 59.184 44.000 0.00 0.00 30.96 4.30
5123 7063 6.346896 CAGGTTAGTAAAATGTACTCCCTCC 58.653 44.000 0.00 0.00 30.96 4.30
5124 7064 5.128335 AGGTTAGTAAAATGTACTCCCTCCG 59.872 44.000 0.00 0.00 28.67 4.63
5125 7065 5.105187 GGTTAGTAAAATGTACTCCCTCCGT 60.105 44.000 0.00 0.00 0.00 4.69
5126 7066 4.732672 AGTAAAATGTACTCCCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
5127 7067 3.450096 AGTAAAATGTACTCCCTCCGTCC 59.550 47.826 0.00 0.00 0.00 4.79
5128 7068 0.822164 AAATGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
5129 7069 1.041447 AATGTACTCCCTCCGTCCGG 61.041 60.000 0.00 0.00 0.00 5.14
5130 7070 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
5131 7071 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
5132 7072 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
5133 7073 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
5134 7074 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
5135 7075 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
5136 7076 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
5137 7077 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
5138 7078 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
5139 7079 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
5140 7080 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
5141 7081 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
5142 7082 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
5143 7083 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
5144 7084 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
5145 7085 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
5146 7086 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
5147 7087 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
5148 7088 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
5149 7089 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
5150 7090 4.679639 CGGAAATACTTGTCGGAGGAATGA 60.680 45.833 0.00 0.00 0.00 2.57
5151 7091 5.183228 GGAAATACTTGTCGGAGGAATGAA 58.817 41.667 0.00 0.00 0.00 2.57
5152 7092 5.823045 GGAAATACTTGTCGGAGGAATGAAT 59.177 40.000 0.00 0.00 0.00 2.57
5153 7093 6.238484 GGAAATACTTGTCGGAGGAATGAATG 60.238 42.308 0.00 0.00 0.00 2.67
5154 7094 3.703001 ACTTGTCGGAGGAATGAATGT 57.297 42.857 0.00 0.00 0.00 2.71
5155 7095 4.819105 ACTTGTCGGAGGAATGAATGTA 57.181 40.909 0.00 0.00 0.00 2.29
5156 7096 5.359194 ACTTGTCGGAGGAATGAATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
5157 7097 5.360591 ACTTGTCGGAGGAATGAATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
5158 7098 5.129485 ACTTGTCGGAGGAATGAATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
5159 7099 6.323996 ACTTGTCGGAGGAATGAATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
5160 7100 6.332735 TGTCGGAGGAATGAATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
5161 7101 6.068670 TGTCGGAGGAATGAATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
5162 7102 6.721668 TGTCGGAGGAATGAATGTATCTAGAT 59.278 38.462 10.73 10.73 0.00 1.98
5163 7103 7.032580 GTCGGAGGAATGAATGTATCTAGATG 58.967 42.308 15.79 0.00 0.00 2.90
5164 7104 6.721668 TCGGAGGAATGAATGTATCTAGATGT 59.278 38.462 15.79 0.00 0.00 3.06
5165 7105 7.888546 TCGGAGGAATGAATGTATCTAGATGTA 59.111 37.037 15.79 4.44 0.00 2.29
5166 7106 8.690884 CGGAGGAATGAATGTATCTAGATGTAT 58.309 37.037 15.79 6.61 0.00 2.29
5204 7144 9.305925 GATACATCCATTTTTGTTCATTTCTCC 57.694 33.333 0.00 0.00 0.00 3.71
5205 7145 6.158598 ACATCCATTTTTGTTCATTTCTCCG 58.841 36.000 0.00 0.00 0.00 4.63
5206 7146 6.015519 ACATCCATTTTTGTTCATTTCTCCGA 60.016 34.615 0.00 0.00 0.00 4.55
5207 7147 5.768317 TCCATTTTTGTTCATTTCTCCGAC 58.232 37.500 0.00 0.00 0.00 4.79
5208 7148 4.616802 CCATTTTTGTTCATTTCTCCGACG 59.383 41.667 0.00 0.00 0.00 5.12
5209 7149 5.448438 CATTTTTGTTCATTTCTCCGACGA 58.552 37.500 0.00 0.00 0.00 4.20
5210 7150 4.725556 TTTTGTTCATTTCTCCGACGAG 57.274 40.909 0.00 0.00 37.48 4.18
5211 7151 3.380479 TTGTTCATTTCTCCGACGAGT 57.620 42.857 0.00 0.00 37.40 4.18
5212 7152 4.508461 TTGTTCATTTCTCCGACGAGTA 57.492 40.909 0.00 0.00 37.40 2.59
5213 7153 4.713824 TGTTCATTTCTCCGACGAGTAT 57.286 40.909 0.00 0.00 37.40 2.12
5214 7154 5.068234 TGTTCATTTCTCCGACGAGTATT 57.932 39.130 0.00 0.00 37.40 1.89
5215 7155 5.475719 TGTTCATTTCTCCGACGAGTATTT 58.524 37.500 0.00 0.00 37.40 1.40
5216 7156 5.929992 TGTTCATTTCTCCGACGAGTATTTT 59.070 36.000 0.00 0.00 37.40 1.82
5217 7157 6.090358 TGTTCATTTCTCCGACGAGTATTTTC 59.910 38.462 0.00 0.00 37.40 2.29
5218 7158 4.796830 TCATTTCTCCGACGAGTATTTTCG 59.203 41.667 0.00 0.00 45.70 3.46
5223 7163 1.186030 CGACGAGTATTTTCGGACGG 58.814 55.000 0.00 0.00 44.57 4.79
5224 7164 1.202065 CGACGAGTATTTTCGGACGGA 60.202 52.381 0.00 0.00 44.57 4.69
5225 7165 2.448219 GACGAGTATTTTCGGACGGAG 58.552 52.381 0.00 0.00 44.57 4.63
5226 7166 1.133790 ACGAGTATTTTCGGACGGAGG 59.866 52.381 0.00 0.00 44.57 4.30
5227 7167 1.535437 CGAGTATTTTCGGACGGAGGG 60.535 57.143 0.00 0.00 36.95 4.30
5228 7168 1.753073 GAGTATTTTCGGACGGAGGGA 59.247 52.381 0.00 0.00 0.00 4.20
5229 7169 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
5462 7402 2.543430 CAGAAACGGTGCCCAAATTTTG 59.457 45.455 1.99 1.99 0.00 2.44
5468 7411 2.939103 CGGTGCCCAAATTTTGAAAACA 59.061 40.909 10.72 0.88 0.00 2.83
5469 7412 3.375299 CGGTGCCCAAATTTTGAAAACAA 59.625 39.130 10.72 0.00 0.00 2.83
5470 7413 4.142600 CGGTGCCCAAATTTTGAAAACAAA 60.143 37.500 10.72 0.00 0.00 2.83
5610 7555 9.854668 ACTAAAGTCAGATATGCTCTACTTAGA 57.145 33.333 0.00 0.00 32.38 2.10
5613 7558 7.197071 AGTCAGATATGCTCTACTTAGAACG 57.803 40.000 0.00 0.00 31.13 3.95
5630 7580 0.580104 ACGGAAAAAGACAACTCGCG 59.420 50.000 0.00 0.00 0.00 5.87
5668 7618 1.289160 TAGGGCTGTTCTGGCAATCT 58.711 50.000 5.75 0.00 0.00 2.40
6010 7964 2.766313 TCAAAGTCACGACCATCAAGG 58.234 47.619 0.00 0.00 45.67 3.61
6106 8060 4.612614 GCATCAATGTGAACAGTACAAACG 59.387 41.667 0.00 0.00 0.00 3.60
6130 8084 5.920840 GTGGATTAAGAAGTCAAAACAAGGC 59.079 40.000 0.00 0.00 0.00 4.35
6133 8087 3.971032 AAGAAGTCAAAACAAGGCGAG 57.029 42.857 0.00 0.00 0.00 5.03
6134 8088 2.222027 AGAAGTCAAAACAAGGCGAGG 58.778 47.619 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.130561 GGCTTAACCTTGATCGTGTGC 59.869 52.381 0.00 0.00 34.51 4.57
1 2 2.416547 CTGGCTTAACCTTGATCGTGTG 59.583 50.000 0.00 0.00 40.22 3.82
5 6 2.168521 TCTCCTGGCTTAACCTTGATCG 59.831 50.000 0.00 0.00 40.22 3.69
23 24 2.171341 AAGCCTTCAAGTTCCGTCTC 57.829 50.000 0.00 0.00 0.00 3.36
30 31 3.885901 GACTTCCTGAAAGCCTTCAAGTT 59.114 43.478 0.00 0.00 41.05 2.66
31 32 3.117888 TGACTTCCTGAAAGCCTTCAAGT 60.118 43.478 0.00 0.06 41.05 3.16
33 34 3.576078 TGACTTCCTGAAAGCCTTCAA 57.424 42.857 0.00 0.00 41.05 2.69
45 46 5.990668 AGTTGTACTCAAGTTTGACTTCCT 58.009 37.500 0.00 0.00 36.03 3.36
53 54 6.183360 GGTTGCCTTTAGTTGTACTCAAGTTT 60.183 38.462 0.00 0.00 38.13 2.66
55 56 4.820173 GGTTGCCTTTAGTTGTACTCAAGT 59.180 41.667 0.00 0.00 39.99 3.16
84 85 2.020694 GCTAGTCCAATGCAGCCACAT 61.021 52.381 0.00 0.00 0.00 3.21
106 107 6.567687 TTGACAATTTTATCTTTCTGGCGA 57.432 33.333 0.00 0.00 0.00 5.54
108 109 8.825745 TGTTTTTGACAATTTTATCTTTCTGGC 58.174 29.630 0.00 0.00 34.69 4.85
122 123 7.714813 CCAAAAGGGTATTCTGTTTTTGACAAT 59.285 33.333 8.96 0.00 39.73 2.71
130 131 6.787458 AGATTTCCCAAAAGGGTATTCTGTTT 59.213 34.615 0.00 0.00 35.67 2.83
138 139 5.340027 GGAGATGAGATTTCCCAAAAGGGTA 60.340 44.000 0.00 0.00 35.67 3.69
145 146 2.435805 CGGAGGAGATGAGATTTCCCAA 59.564 50.000 0.00 0.00 0.00 4.12
146 147 2.042464 CGGAGGAGATGAGATTTCCCA 58.958 52.381 0.00 0.00 0.00 4.37
165 166 0.820074 TGCCTTTGTTGTACCACCCG 60.820 55.000 0.00 0.00 0.00 5.28
169 170 2.513753 CCTCATGCCTTTGTTGTACCA 58.486 47.619 0.00 0.00 0.00 3.25
173 174 0.178953 AGCCCTCATGCCTTTGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
180 181 1.132554 CATCCCTAGCCCTCATGCCT 61.133 60.000 0.00 0.00 0.00 4.75
194 195 2.678336 CGAGGCTTTGACTTTACATCCC 59.322 50.000 0.00 0.00 0.00 3.85
198 199 4.307432 CTCTTCGAGGCTTTGACTTTACA 58.693 43.478 0.00 0.00 0.00 2.41
201 202 2.147150 GCTCTTCGAGGCTTTGACTTT 58.853 47.619 0.00 0.00 0.00 2.66
232 233 7.917505 CCTGCATGGTATAAATGTTTTTCTCTC 59.082 37.037 0.00 0.00 0.00 3.20
241 242 3.207265 TCGCCTGCATGGTATAAATGT 57.793 42.857 0.00 0.00 38.35 2.71
243 244 5.590259 GGAATATCGCCTGCATGGTATAAAT 59.410 40.000 0.00 0.00 38.35 1.40
244 245 4.941263 GGAATATCGCCTGCATGGTATAAA 59.059 41.667 0.00 0.00 38.35 1.40
247 248 2.305635 TGGAATATCGCCTGCATGGTAT 59.694 45.455 0.00 0.00 38.35 2.73
279 281 3.719871 TCTCAAGCTACCCTGAATGGTA 58.280 45.455 0.00 0.00 39.91 3.25
322 328 8.345565 GTCACTATGAAACAAGACAAAATCTGT 58.654 33.333 0.00 0.00 42.61 3.41
347 353 7.213678 TGAAACAAGAAAAGAAAAACCAGTGT 58.786 30.769 0.00 0.00 0.00 3.55
348 354 7.650834 TGAAACAAGAAAAGAAAAACCAGTG 57.349 32.000 0.00 0.00 0.00 3.66
351 357 8.502387 CATGTTGAAACAAGAAAAGAAAAACCA 58.498 29.630 0.00 0.00 43.03 3.67
352 358 8.503196 ACATGTTGAAACAAGAAAAGAAAAACC 58.497 29.630 5.49 0.00 43.03 3.27
355 361 9.145865 GGTACATGTTGAAACAAGAAAAGAAAA 57.854 29.630 2.30 0.00 43.03 2.29
359 365 5.685511 CCGGTACATGTTGAAACAAGAAAAG 59.314 40.000 2.30 0.00 43.03 2.27
380 389 4.094294 ACGATACACAATGAAACATTCCGG 59.906 41.667 0.00 0.00 0.00 5.14
383 392 6.855914 ACACAACGATACACAATGAAACATTC 59.144 34.615 0.00 0.00 0.00 2.67
401 410 7.010183 CCTGATTGGATTTACTAGTACACAACG 59.990 40.741 0.91 0.00 38.35 4.10
427 436 6.203723 ACAGACAAATAAGAGTGCACTTCTTC 59.796 38.462 22.65 8.37 0.00 2.87
446 456 5.400188 CGTAAAGTTTCATCGTGTACAGACA 59.600 40.000 0.00 0.00 0.00 3.41
447 457 5.626543 TCGTAAAGTTTCATCGTGTACAGAC 59.373 40.000 0.00 0.00 0.00 3.51
449 459 5.854866 TCTCGTAAAGTTTCATCGTGTACAG 59.145 40.000 0.00 0.00 0.00 2.74
450 460 5.626543 GTCTCGTAAAGTTTCATCGTGTACA 59.373 40.000 0.00 0.00 0.00 2.90
451 461 5.626543 TGTCTCGTAAAGTTTCATCGTGTAC 59.373 40.000 0.00 0.00 0.00 2.90
452 462 5.626543 GTGTCTCGTAAAGTTTCATCGTGTA 59.373 40.000 0.00 0.00 0.00 2.90
453 463 4.443394 GTGTCTCGTAAAGTTTCATCGTGT 59.557 41.667 0.00 0.00 0.00 4.49
454 464 4.680110 AGTGTCTCGTAAAGTTTCATCGTG 59.320 41.667 0.00 0.00 0.00 4.35
455 465 4.868067 AGTGTCTCGTAAAGTTTCATCGT 58.132 39.130 0.00 0.00 0.00 3.73
456 466 5.824243 AAGTGTCTCGTAAAGTTTCATCG 57.176 39.130 0.00 0.00 0.00 3.84
457 467 6.202188 TCCAAAGTGTCTCGTAAAGTTTCATC 59.798 38.462 0.00 0.00 0.00 2.92
549 559 7.716768 AAGACTTGTGCTACTTTTCTTACTC 57.283 36.000 0.00 0.00 0.00 2.59
591 2251 2.167281 AGACATCTTGACCGTGGATCTG 59.833 50.000 0.00 0.00 0.00 2.90
593 2253 2.428890 AGAGACATCTTGACCGTGGATC 59.571 50.000 0.00 0.00 28.57 3.36
626 2287 3.955650 TGCTACTAGGAGTGTGGTTTC 57.044 47.619 3.31 0.00 0.00 2.78
664 2357 3.124636 CAGCGTTTGGTGTTACATACTCC 59.875 47.826 0.00 0.00 40.18 3.85
665 2358 3.124636 CCAGCGTTTGGTGTTACATACTC 59.875 47.826 0.00 0.00 42.41 2.59
667 2360 3.465122 CCAGCGTTTGGTGTTACATAC 57.535 47.619 0.00 0.00 42.41 2.39
679 2372 2.477189 CGGAAAATTATCGCCAGCGTTT 60.477 45.455 12.32 4.64 40.74 3.60
681 2374 0.655733 CGGAAAATTATCGCCAGCGT 59.344 50.000 12.32 2.31 40.74 5.07
682 2375 0.041312 CCGGAAAATTATCGCCAGCG 60.041 55.000 5.50 5.50 41.35 5.18
683 2376 0.310854 CCCGGAAAATTATCGCCAGC 59.689 55.000 0.73 0.00 0.00 4.85
684 2377 1.602377 GTCCCGGAAAATTATCGCCAG 59.398 52.381 0.73 0.00 0.00 4.85
685 2378 1.670791 GTCCCGGAAAATTATCGCCA 58.329 50.000 0.73 0.00 0.00 5.69
686 2379 0.949397 GGTCCCGGAAAATTATCGCC 59.051 55.000 0.73 0.00 0.00 5.54
816 2510 4.570663 CGACAGGGACGGATCGCC 62.571 72.222 0.00 0.00 38.56 5.54
819 2513 3.458163 TGGCGACAGGGACGGATC 61.458 66.667 0.00 0.00 35.01 3.36
843 2537 2.947852 AGATTCAGGAAGAACACGACG 58.052 47.619 0.00 0.00 39.49 5.12
862 2556 3.928727 TGGAACGTACTACCACTGAAG 57.071 47.619 0.00 0.00 0.00 3.02
916 2627 0.178861 AGGGGACTGGACTGGAATGT 60.179 55.000 0.00 0.00 41.13 2.71
940 2690 1.219646 GCAACCGTTACCGAACTTGA 58.780 50.000 0.00 0.00 35.63 3.02
1046 2816 1.599606 CTGGTGACCGGTCAGAGAGG 61.600 65.000 37.04 20.30 40.75 3.69
1070 2840 3.252554 AGAAGAGGACACAGAGGTCTT 57.747 47.619 0.00 0.00 37.91 3.01
1071 2841 2.990740 AGAAGAGGACACAGAGGTCT 57.009 50.000 0.00 0.00 37.91 3.85
1072 2842 2.232696 GGAAGAAGAGGACACAGAGGTC 59.767 54.545 0.00 0.00 37.06 3.85
1073 2843 2.158234 AGGAAGAAGAGGACACAGAGGT 60.158 50.000 0.00 0.00 0.00 3.85
1074 2844 2.233431 CAGGAAGAAGAGGACACAGAGG 59.767 54.545 0.00 0.00 0.00 3.69
1111 2888 1.601759 CTTGGGGTGGTGTGAGCTG 60.602 63.158 0.00 0.00 0.00 4.24
1112 2889 2.833913 CCTTGGGGTGGTGTGAGCT 61.834 63.158 0.00 0.00 0.00 4.09
1113 2890 2.282462 CCTTGGGGTGGTGTGAGC 60.282 66.667 0.00 0.00 0.00 4.26
1114 2891 2.282462 GCCTTGGGGTGGTGTGAG 60.282 66.667 0.00 0.00 34.45 3.51
1115 2892 3.897122 GGCCTTGGGGTGGTGTGA 61.897 66.667 0.00 0.00 34.45 3.58
1116 2893 4.994756 GGGCCTTGGGGTGGTGTG 62.995 72.222 0.84 0.00 34.45 3.82
1133 2910 1.421410 GGTGTCGTGCTTATCTGCGG 61.421 60.000 0.00 0.00 35.36 5.69
1234 3011 1.309499 AAGAGCGACAGAGGGACGAG 61.309 60.000 0.00 0.00 0.00 4.18
1263 3040 4.385825 TCGAACCACAGAAAAGCTACAAT 58.614 39.130 0.00 0.00 0.00 2.71
1309 3094 2.386660 GCGCAGAACAGGCAGAGAC 61.387 63.158 0.30 0.00 0.00 3.36
1355 3140 2.467826 GCCATGGCGAACTCAGAGC 61.468 63.158 23.48 0.00 0.00 4.09
1420 3205 4.057428 GAGCCACACCGAGACGCT 62.057 66.667 0.00 0.00 0.00 5.07
1677 3462 1.757118 CTGATGGCGAAGGAGTAGGAA 59.243 52.381 0.00 0.00 0.00 3.36
1728 3513 2.845363 GGTACACGAAGGGGAAGAAA 57.155 50.000 0.00 0.00 0.00 2.52
1953 3738 2.704193 CTCGACGGCGTTCACGAAC 61.704 63.158 16.19 0.00 43.02 3.95
1959 3744 4.755614 ACGAGCTCGACGGCGTTC 62.756 66.667 40.58 6.26 43.02 3.95
2127 3912 2.064581 GGGCTGGTCGGTAGTCCAT 61.065 63.158 0.00 0.00 39.73 3.41
2133 3918 2.043248 GAGAGGGGCTGGTCGGTA 60.043 66.667 0.00 0.00 0.00 4.02
2141 3926 1.462928 CTAGGATCGGAGAGGGGCT 59.537 63.158 0.00 0.00 43.63 5.19
2144 3929 4.854587 CCCTAGGATCGGAGAGGG 57.145 66.667 11.48 5.70 43.63 4.30
2152 3940 2.638154 CGCGTCGACCCTAGGATC 59.362 66.667 11.48 0.00 0.00 3.36
2155 3943 4.189188 CACCGCGTCGACCCTAGG 62.189 72.222 10.58 10.51 0.00 3.02
2159 3947 4.773117 GAGTCACCGCGTCGACCC 62.773 72.222 18.30 0.00 32.33 4.46
2184 3972 0.669619 TCAGCGTCCTGTTGTAACGA 59.330 50.000 0.00 0.00 40.09 3.85
2187 3975 1.870580 CGGTTCAGCGTCCTGTTGTAA 60.871 52.381 0.00 0.00 40.09 2.41
2194 3982 4.379243 CAGGCGGTTCAGCGTCCT 62.379 66.667 0.00 4.19 38.18 3.85
2281 4069 3.257561 CCCGTCGAATGAGCTGCG 61.258 66.667 0.00 0.00 0.00 5.18
2334 4122 2.502295 CTGATGAAATAGCTGGAGCCC 58.498 52.381 0.00 0.00 43.38 5.19
2335 4123 2.158696 ACCTGATGAAATAGCTGGAGCC 60.159 50.000 0.00 0.00 43.38 4.70
2346 4134 3.149196 GCAGAAGTGGAACCTGATGAAA 58.851 45.455 0.00 0.00 37.80 2.69
2380 4168 3.791586 GAGCTGGTGGGGAGCCTC 61.792 72.222 0.00 0.00 37.12 4.70
2556 4344 4.037690 GCATCACGATCTTATTTGCCAAC 58.962 43.478 0.00 0.00 0.00 3.77
2557 4345 3.066621 GGCATCACGATCTTATTTGCCAA 59.933 43.478 14.78 0.00 45.75 4.52
2677 4465 3.093278 GCCAAGAATGACGGCGAG 58.907 61.111 16.62 0.00 35.79 5.03
2686 4474 0.606401 CCACACACGGAGCCAAGAAT 60.606 55.000 0.00 0.00 0.00 2.40
2765 4553 4.825679 CACCCTCCTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
2771 4565 1.205055 CTCCTTAACACCCTCCTCCC 58.795 60.000 0.00 0.00 0.00 4.30
2783 4589 2.125673 GCGTCGGCTGCTCCTTAA 60.126 61.111 0.00 0.00 35.83 1.85
2871 4677 2.499289 AGTGAAGCTTGACGATCCTGAT 59.501 45.455 10.51 0.00 0.00 2.90
2953 4759 1.583495 GGGAAACGGTAGCTTGGCAC 61.583 60.000 0.00 0.00 0.00 5.01
3489 5295 3.121030 CCGAAGCTGCCCTTGACG 61.121 66.667 0.00 0.00 32.78 4.35
3492 5298 1.745489 GTACCCGAAGCTGCCCTTG 60.745 63.158 0.00 0.00 32.78 3.61
3675 5481 1.733402 CGATCTTCTCCAGCTCGCCT 61.733 60.000 0.00 0.00 34.53 5.52
3741 5547 4.203076 GCCACCGTCTCGCCGTAT 62.203 66.667 0.00 0.00 0.00 3.06
3927 5736 4.812476 TCCAGGCCGTCGCAATCG 62.812 66.667 0.00 0.00 36.38 3.34
3931 5740 4.373116 GAAGTCCAGGCCGTCGCA 62.373 66.667 0.00 0.00 36.38 5.10
3994 5803 1.535204 CCTTCCATGCTGCCGGTTTT 61.535 55.000 1.90 0.00 0.00 2.43
4006 5815 0.824759 GCTACACCGTCTCCTTCCAT 59.175 55.000 0.00 0.00 0.00 3.41
4020 5829 0.736636 AATCGTCATCGTCGGCTACA 59.263 50.000 0.00 0.00 38.33 2.74
4026 5835 2.276540 GTCTGTGAAATCGTCATCGTCG 59.723 50.000 0.00 0.00 38.90 5.12
4027 5836 2.276540 CGTCTGTGAAATCGTCATCGTC 59.723 50.000 0.00 0.00 38.90 4.20
4028 5837 2.251040 CGTCTGTGAAATCGTCATCGT 58.749 47.619 0.00 0.00 38.90 3.73
4068 5877 1.838112 GGACATTGACCATCTGCCAA 58.162 50.000 0.00 0.00 0.00 4.52
4102 5911 6.893583 ACCATCTTCTCATACAAAGCTATGT 58.106 36.000 0.00 0.00 37.32 2.29
4103 5912 7.281774 ACAACCATCTTCTCATACAAAGCTATG 59.718 37.037 0.00 0.00 0.00 2.23
4104 5913 7.281774 CACAACCATCTTCTCATACAAAGCTAT 59.718 37.037 0.00 0.00 0.00 2.97
4105 5914 6.595326 CACAACCATCTTCTCATACAAAGCTA 59.405 38.462 0.00 0.00 0.00 3.32
4106 5915 5.413833 CACAACCATCTTCTCATACAAAGCT 59.586 40.000 0.00 0.00 0.00 3.74
4108 5917 6.808008 ACACAACCATCTTCTCATACAAAG 57.192 37.500 0.00 0.00 0.00 2.77
4109 5918 7.581213 AAACACAACCATCTTCTCATACAAA 57.419 32.000 0.00 0.00 0.00 2.83
4110 5919 7.581213 AAAACACAACCATCTTCTCATACAA 57.419 32.000 0.00 0.00 0.00 2.41
4145 5955 1.003580 TCCAGCATCCACTTTCCTCAC 59.996 52.381 0.00 0.00 0.00 3.51
4152 5962 6.610075 AACAATATTTTCCAGCATCCACTT 57.390 33.333 0.00 0.00 0.00 3.16
4169 5979 4.735369 TGAAAGCTGGAGGGAAAACAATA 58.265 39.130 0.00 0.00 0.00 1.90
4177 5987 0.693049 GTCCTTGAAAGCTGGAGGGA 59.307 55.000 0.00 0.00 0.00 4.20
4185 5995 5.392057 GCTGGTAGTATTTGTCCTTGAAAGC 60.392 44.000 0.00 0.00 0.00 3.51
4206 6017 6.692681 GTGCTATACATTGGTTGTAAATGCTG 59.307 38.462 0.00 0.00 43.84 4.41
4214 6025 3.006940 CACCGTGCTATACATTGGTTGT 58.993 45.455 0.00 0.00 37.68 3.32
4216 6027 3.620427 TCACCGTGCTATACATTGGTT 57.380 42.857 0.00 0.00 37.68 3.67
4221 6032 4.584743 TCTCATCTTCACCGTGCTATACAT 59.415 41.667 0.00 0.00 0.00 2.29
4222 6033 3.951680 TCTCATCTTCACCGTGCTATACA 59.048 43.478 0.00 0.00 0.00 2.29
4223 6034 4.569761 TCTCATCTTCACCGTGCTATAC 57.430 45.455 0.00 0.00 0.00 1.47
4224 6035 5.592104 TTTCTCATCTTCACCGTGCTATA 57.408 39.130 0.00 0.00 0.00 1.31
4225 6036 4.471904 TTTCTCATCTTCACCGTGCTAT 57.528 40.909 0.00 0.00 0.00 2.97
4233 6044 8.256611 TGTGCTTAGTAATTTCTCATCTTCAC 57.743 34.615 0.00 0.00 0.00 3.18
4250 6061 9.859427 TTCCATCAAATAATCTTTTGTGCTTAG 57.141 29.630 0.00 0.00 37.73 2.18
4252 6063 9.158233 CATTCCATCAAATAATCTTTTGTGCTT 57.842 29.630 0.00 0.00 37.73 3.91
4254 6065 8.483307 ACATTCCATCAAATAATCTTTTGTGC 57.517 30.769 0.00 0.00 37.73 4.57
4270 6081 7.315142 TCATTTTGCAGTTTCTACATTCCATC 58.685 34.615 0.00 0.00 0.00 3.51
4271 6082 7.230849 TCATTTTGCAGTTTCTACATTCCAT 57.769 32.000 0.00 0.00 0.00 3.41
4272 6083 6.647334 TCATTTTGCAGTTTCTACATTCCA 57.353 33.333 0.00 0.00 0.00 3.53
4273 6084 7.276438 GGAATCATTTTGCAGTTTCTACATTCC 59.724 37.037 0.00 0.00 0.00 3.01
4274 6085 7.814107 TGGAATCATTTTGCAGTTTCTACATTC 59.186 33.333 0.00 0.00 0.00 2.67
4275 6086 7.669427 TGGAATCATTTTGCAGTTTCTACATT 58.331 30.769 0.00 0.00 0.00 2.71
4276 6087 7.230849 TGGAATCATTTTGCAGTTTCTACAT 57.769 32.000 0.00 0.00 0.00 2.29
4277 6088 6.647334 TGGAATCATTTTGCAGTTTCTACA 57.353 33.333 0.00 0.00 0.00 2.74
4278 6089 7.062605 CACATGGAATCATTTTGCAGTTTCTAC 59.937 37.037 0.00 0.00 0.00 2.59
4279 6090 7.092079 CACATGGAATCATTTTGCAGTTTCTA 58.908 34.615 0.00 0.00 0.00 2.10
4280 6091 5.929992 CACATGGAATCATTTTGCAGTTTCT 59.070 36.000 0.00 0.00 0.00 2.52
4341 6152 6.489675 TCGTGTACTCTATTTCGGTATTGAC 58.510 40.000 0.00 0.00 0.00 3.18
4395 6206 5.417266 TGAAACTCTCCAAACATGTTGAACA 59.583 36.000 12.82 0.00 0.00 3.18
4424 6235 7.121907 CGAGAGATGGATCATATTCTTCCTACA 59.878 40.741 0.00 0.00 0.00 2.74
4436 6247 2.158400 TGAGGGTCGAGAGATGGATCAT 60.158 50.000 0.00 0.00 45.19 2.45
4469 6280 1.140852 CAGTGTTCACCCAGTGGAAGA 59.859 52.381 11.95 4.96 33.87 2.87
4499 6310 3.199946 GGTGGAGGTTGAGTTATGGATCA 59.800 47.826 0.00 0.00 0.00 2.92
4516 6327 1.768684 GAAGTGCCTCACCTGGTGGA 61.769 60.000 25.67 12.06 34.49 4.02
4522 6333 1.757306 CAGTGGAAGTGCCTCACCT 59.243 57.895 0.00 0.00 37.63 4.00
4546 6357 1.805428 AAGACAATGGCAACCACCGC 61.805 55.000 0.00 0.00 35.80 5.68
4709 6520 2.659610 GAGGAGCGCTTCACCTGT 59.340 61.111 19.98 0.00 35.81 4.00
4819 6630 4.662961 CGTGACAGTCGCAGCCCA 62.663 66.667 14.49 0.00 0.00 5.36
4870 6711 2.420687 GGATGAAAGGCGATCAAGGAGT 60.421 50.000 0.00 0.00 0.00 3.85
4982 6824 5.623673 GCTTTTAAACATACTCGTGTTGTGG 59.376 40.000 0.00 0.00 41.22 4.17
5114 7054 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
5115 7055 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
5116 7056 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
5118 7058 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
5119 7059 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
5120 7060 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
5121 7061 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
5122 7062 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
5123 7063 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
5124 7064 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
5125 7065 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
5126 7066 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
5127 7067 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
5128 7068 4.766375 TCATTCCTCCGACAAGTATTTCC 58.234 43.478 0.00 0.00 0.00 3.13
5129 7069 6.316390 ACATTCATTCCTCCGACAAGTATTTC 59.684 38.462 0.00 0.00 0.00 2.17
5130 7070 6.180472 ACATTCATTCCTCCGACAAGTATTT 58.820 36.000 0.00 0.00 0.00 1.40
5131 7071 5.745227 ACATTCATTCCTCCGACAAGTATT 58.255 37.500 0.00 0.00 0.00 1.89
5132 7072 5.359194 ACATTCATTCCTCCGACAAGTAT 57.641 39.130 0.00 0.00 0.00 2.12
5133 7073 4.819105 ACATTCATTCCTCCGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
5134 7074 3.703001 ACATTCATTCCTCCGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
5135 7075 5.605534 AGATACATTCATTCCTCCGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
5136 7076 5.614324 AGATACATTCATTCCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
5137 7077 6.068670 TCTAGATACATTCATTCCTCCGACA 58.931 40.000 0.00 0.00 0.00 4.35
5138 7078 6.576662 TCTAGATACATTCATTCCTCCGAC 57.423 41.667 0.00 0.00 0.00 4.79
5139 7079 6.721668 ACATCTAGATACATTCATTCCTCCGA 59.278 38.462 4.54 0.00 0.00 4.55
5140 7080 6.929625 ACATCTAGATACATTCATTCCTCCG 58.070 40.000 4.54 0.00 0.00 4.63
5178 7118 9.305925 GGAGAAATGAACAAAAATGGATGTATC 57.694 33.333 0.00 0.00 0.00 2.24
5179 7119 7.975616 CGGAGAAATGAACAAAAATGGATGTAT 59.024 33.333 0.00 0.00 0.00 2.29
5180 7120 7.175816 TCGGAGAAATGAACAAAAATGGATGTA 59.824 33.333 0.00 0.00 0.00 2.29
5181 7121 6.015519 TCGGAGAAATGAACAAAAATGGATGT 60.016 34.615 0.00 0.00 0.00 3.06
5182 7122 6.308766 GTCGGAGAAATGAACAAAAATGGATG 59.691 38.462 0.00 0.00 39.69 3.51
5183 7123 6.389906 GTCGGAGAAATGAACAAAAATGGAT 58.610 36.000 0.00 0.00 39.69 3.41
5184 7124 5.561919 CGTCGGAGAAATGAACAAAAATGGA 60.562 40.000 0.00 0.00 39.69 3.41
5185 7125 4.616802 CGTCGGAGAAATGAACAAAAATGG 59.383 41.667 0.00 0.00 39.69 3.16
5186 7126 5.448438 TCGTCGGAGAAATGAACAAAAATG 58.552 37.500 0.00 0.00 39.69 2.32
5187 7127 5.238650 ACTCGTCGGAGAAATGAACAAAAAT 59.761 36.000 0.00 0.00 43.27 1.82
5188 7128 4.573201 ACTCGTCGGAGAAATGAACAAAAA 59.427 37.500 0.00 0.00 43.27 1.94
5189 7129 4.124238 ACTCGTCGGAGAAATGAACAAAA 58.876 39.130 0.00 0.00 43.27 2.44
5190 7130 3.724374 ACTCGTCGGAGAAATGAACAAA 58.276 40.909 0.00 0.00 43.27 2.83
5191 7131 3.380479 ACTCGTCGGAGAAATGAACAA 57.620 42.857 0.00 0.00 43.27 2.83
5192 7132 4.713824 ATACTCGTCGGAGAAATGAACA 57.286 40.909 0.00 0.00 43.27 3.18
5193 7133 6.404712 AAAATACTCGTCGGAGAAATGAAC 57.595 37.500 0.00 0.00 43.27 3.18
5194 7134 5.287752 CGAAAATACTCGTCGGAGAAATGAA 59.712 40.000 0.00 0.00 43.27 2.57
5195 7135 4.796830 CGAAAATACTCGTCGGAGAAATGA 59.203 41.667 0.00 0.00 43.27 2.57
5196 7136 5.054780 CGAAAATACTCGTCGGAGAAATG 57.945 43.478 0.00 0.00 43.27 2.32
5204 7144 1.186030 CCGTCCGAAAATACTCGTCG 58.814 55.000 0.00 0.00 37.11 5.12
5205 7145 2.448219 CTCCGTCCGAAAATACTCGTC 58.552 52.381 0.00 0.00 37.11 4.20
5206 7146 1.133790 CCTCCGTCCGAAAATACTCGT 59.866 52.381 0.00 0.00 37.11 4.18
5207 7147 1.535437 CCCTCCGTCCGAAAATACTCG 60.535 57.143 0.00 0.00 38.58 4.18
5208 7148 1.753073 TCCCTCCGTCCGAAAATACTC 59.247 52.381 0.00 0.00 0.00 2.59
5209 7149 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
5210 7150 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
5211 7151 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
5212 7152 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
5213 7153 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
5214 7154 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
5215 7155 0.256752 TCATACTCCCTCCGTCCGAA 59.743 55.000 0.00 0.00 0.00 4.30
5216 7156 0.256752 TTCATACTCCCTCCGTCCGA 59.743 55.000 0.00 0.00 0.00 4.55
5217 7157 0.669077 CTTCATACTCCCTCCGTCCG 59.331 60.000 0.00 0.00 0.00 4.79
5218 7158 1.777941 ACTTCATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
5219 7159 4.441217 GGTTTACTTCATACTCCCTCCGTC 60.441 50.000 0.00 0.00 0.00 4.79
5220 7160 3.450096 GGTTTACTTCATACTCCCTCCGT 59.550 47.826 0.00 0.00 0.00 4.69
5221 7161 3.705072 AGGTTTACTTCATACTCCCTCCG 59.295 47.826 0.00 0.00 0.00 4.63
5222 7162 6.741801 GCATAGGTTTACTTCATACTCCCTCC 60.742 46.154 0.00 0.00 0.00 4.30
5223 7163 6.224584 GCATAGGTTTACTTCATACTCCCTC 58.775 44.000 0.00 0.00 0.00 4.30
5224 7164 5.071923 GGCATAGGTTTACTTCATACTCCCT 59.928 44.000 0.00 0.00 0.00 4.20
5225 7165 5.306394 GGCATAGGTTTACTTCATACTCCC 58.694 45.833 0.00 0.00 0.00 4.30
5226 7166 5.163237 TGGGCATAGGTTTACTTCATACTCC 60.163 44.000 0.00 0.00 0.00 3.85
5227 7167 5.758784 GTGGGCATAGGTTTACTTCATACTC 59.241 44.000 0.00 0.00 0.00 2.59
5228 7168 5.190925 TGTGGGCATAGGTTTACTTCATACT 59.809 40.000 0.00 0.00 0.00 2.12
5229 7169 5.433526 TGTGGGCATAGGTTTACTTCATAC 58.566 41.667 0.00 0.00 0.00 2.39
5462 7402 8.507524 AGGAGCTACAGGTATATTTTGTTTTC 57.492 34.615 0.00 0.00 0.00 2.29
5468 7411 6.516860 CGCAGTAGGAGCTACAGGTATATTTT 60.517 42.308 0.00 0.00 39.22 1.82
5469 7412 5.047943 CGCAGTAGGAGCTACAGGTATATTT 60.048 44.000 0.00 0.00 39.22 1.40
5470 7413 4.459685 CGCAGTAGGAGCTACAGGTATATT 59.540 45.833 0.00 0.00 39.22 1.28
5610 7555 1.004292 CGCGAGTTGTCTTTTTCCGTT 60.004 47.619 0.00 0.00 0.00 4.44
5611 7556 0.580104 CGCGAGTTGTCTTTTTCCGT 59.420 50.000 0.00 0.00 0.00 4.69
5612 7557 0.110823 CCGCGAGTTGTCTTTTTCCG 60.111 55.000 8.23 0.00 0.00 4.30
5613 7558 0.237498 CCCGCGAGTTGTCTTTTTCC 59.763 55.000 8.23 0.00 0.00 3.13
5630 7580 2.808906 AAGAACCTCAAGTATGCCCC 57.191 50.000 0.00 0.00 0.00 5.80
5668 7618 4.345257 GGAGATAGTGGCCACATAGAAAGA 59.655 45.833 36.39 11.76 0.00 2.52
5949 7903 7.005296 TGTTGAGTTTGCTAAAGGGGTAATTA 58.995 34.615 0.00 0.00 0.00 1.40
5950 7904 5.836358 TGTTGAGTTTGCTAAAGGGGTAATT 59.164 36.000 0.00 0.00 0.00 1.40
5951 7905 5.390387 TGTTGAGTTTGCTAAAGGGGTAAT 58.610 37.500 0.00 0.00 0.00 1.89
5952 7906 4.794334 TGTTGAGTTTGCTAAAGGGGTAA 58.206 39.130 0.00 0.00 0.00 2.85
6106 8060 5.920840 GCCTTGTTTTGACTTCTTAATCCAC 59.079 40.000 0.00 0.00 0.00 4.02
6130 8084 2.163010 TGTAAGTAACCGCTCTTCCTCG 59.837 50.000 0.00 0.00 0.00 4.63
6133 8087 3.656559 TGTTGTAAGTAACCGCTCTTCC 58.343 45.455 0.00 0.00 0.00 3.46
6134 8088 5.662211 TTTGTTGTAAGTAACCGCTCTTC 57.338 39.130 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.