Multiple sequence alignment - TraesCS3B01G150600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G150600 chr3B 100.000 3044 0 0 1 3044 141753470 141750427 0.000000e+00 5622
1 TraesCS3B01G150600 chr3B 91.599 1345 93 13 705 2038 141815986 141814651 0.000000e+00 1840
2 TraesCS3B01G150600 chr3B 98.515 1010 12 2 2038 3044 385477781 385476772 0.000000e+00 1779
3 TraesCS3B01G150600 chr3B 89.534 1051 106 4 988 2036 141864440 141863392 0.000000e+00 1328
4 TraesCS3B01G150600 chr3B 82.869 467 47 22 399 835 141865130 141864667 3.680000e-104 388
5 TraesCS3B01G150600 chr3B 84.810 316 17 13 390 691 141822112 141821814 3.840000e-74 289
6 TraesCS3B01G150600 chr3A 90.947 1690 97 28 360 2038 545359198 545357554 0.000000e+00 2222
7 TraesCS3B01G150600 chr3A 86.950 1387 138 22 652 2020 545892512 545891151 0.000000e+00 1519
8 TraesCS3B01G150600 chr3A 86.501 363 39 5 1 356 328917562 328917203 1.020000e-104 390
9 TraesCS3B01G150600 chr3A 80.645 186 17 10 746 930 545372516 545372349 3.190000e-25 126
10 TraesCS3B01G150600 chr3D 93.959 1225 53 11 814 2038 91802952 91801749 0.000000e+00 1832
11 TraesCS3B01G150600 chr3D 87.814 1313 130 18 728 2036 91833615 91832329 0.000000e+00 1511
12 TraesCS3B01G150600 chr3D 90.494 1052 95 5 987 2036 92264162 92263114 0.000000e+00 1384
13 TraesCS3B01G150600 chr3D 88.245 1208 70 22 389 1585 92224455 92223309 0.000000e+00 1378
14 TraesCS3B01G150600 chr3D 89.238 1050 110 3 988 2036 92360124 92359077 0.000000e+00 1310
15 TraesCS3B01G150600 chr3D 89.143 1050 112 2 988 2036 92125240 92124192 0.000000e+00 1306
16 TraesCS3B01G150600 chr3D 87.879 363 36 4 1 356 448311226 448311587 1.310000e-113 420
17 TraesCS3B01G150600 chr3D 84.211 456 40 22 399 835 92125818 92125376 6.070000e-112 414
18 TraesCS3B01G150600 chr3D 83.008 359 44 11 473 822 91803854 91803504 2.950000e-80 309
19 TraesCS3B01G150600 chr3D 86.538 156 16 2 644 796 92360389 92360236 1.880000e-37 167
20 TraesCS3B01G150600 chr3D 81.757 148 11 13 399 537 92360593 92360453 3.210000e-20 110
21 TraesCS3B01G150600 chr4A 99.106 1007 6 2 2041 3044 705713485 705712479 0.000000e+00 1807
22 TraesCS3B01G150600 chr7B 99.009 1009 6 3 2039 3044 450597155 450596148 0.000000e+00 1805
23 TraesCS3B01G150600 chr7B 98.811 1009 7 3 2039 3044 485463174 485464180 0.000000e+00 1792
24 TraesCS3B01G150600 chr7B 98.425 1016 11 3 2034 3044 123768890 123769905 0.000000e+00 1783
25 TraesCS3B01G150600 chr4B 99.009 1009 7 2 2039 3044 28228444 28227436 0.000000e+00 1805
26 TraesCS3B01G150600 chr2B 99.010 1010 4 3 2038 3044 338746732 338745726 0.000000e+00 1805
27 TraesCS3B01G150600 chr5B 98.345 1027 11 5 2022 3044 560436518 560435494 0.000000e+00 1797
28 TraesCS3B01G150600 chr5B 86.047 344 45 3 17 358 646632246 646631904 1.720000e-97 366
29 TraesCS3B01G150600 chr2A 98.515 1010 12 2 2038 3044 116437767 116438776 0.000000e+00 1779
30 TraesCS3B01G150600 chr7D 91.899 358 28 1 1 357 49876969 49876612 1.630000e-137 499
31 TraesCS3B01G150600 chr7D 87.679 349 35 4 1 342 501826432 501826779 1.700000e-107 399
32 TraesCS3B01G150600 chr6D 88.701 354 37 2 1 353 448957005 448957356 2.170000e-116 429
33 TraesCS3B01G150600 chr7A 87.637 364 37 6 1 357 89990981 89991343 1.690000e-112 416
34 TraesCS3B01G150600 chr4D 87.500 360 44 1 1 359 496005889 496005530 6.070000e-112 414
35 TraesCS3B01G150600 chr4D 86.555 357 47 1 1 356 30903583 30903227 2.850000e-105 392


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G150600 chr3B 141750427 141753470 3043 True 5622.0 5622 100.000000 1 3044 1 chr3B.!!$R1 3043
1 TraesCS3B01G150600 chr3B 141814651 141815986 1335 True 1840.0 1840 91.599000 705 2038 1 chr3B.!!$R2 1333
2 TraesCS3B01G150600 chr3B 385476772 385477781 1009 True 1779.0 1779 98.515000 2038 3044 1 chr3B.!!$R4 1006
3 TraesCS3B01G150600 chr3B 141863392 141865130 1738 True 858.0 1328 86.201500 399 2036 2 chr3B.!!$R5 1637
4 TraesCS3B01G150600 chr3A 545357554 545359198 1644 True 2222.0 2222 90.947000 360 2038 1 chr3A.!!$R2 1678
5 TraesCS3B01G150600 chr3A 545891151 545892512 1361 True 1519.0 1519 86.950000 652 2020 1 chr3A.!!$R4 1368
6 TraesCS3B01G150600 chr3D 91832329 91833615 1286 True 1511.0 1511 87.814000 728 2036 1 chr3D.!!$R1 1308
7 TraesCS3B01G150600 chr3D 92263114 92264162 1048 True 1384.0 1384 90.494000 987 2036 1 chr3D.!!$R3 1049
8 TraesCS3B01G150600 chr3D 92223309 92224455 1146 True 1378.0 1378 88.245000 389 1585 1 chr3D.!!$R2 1196
9 TraesCS3B01G150600 chr3D 91801749 91803854 2105 True 1070.5 1832 88.483500 473 2038 2 chr3D.!!$R4 1565
10 TraesCS3B01G150600 chr3D 92124192 92125818 1626 True 860.0 1306 86.677000 399 2036 2 chr3D.!!$R5 1637
11 TraesCS3B01G150600 chr3D 92359077 92360593 1516 True 529.0 1310 85.844333 399 2036 3 chr3D.!!$R6 1637
12 TraesCS3B01G150600 chr4A 705712479 705713485 1006 True 1807.0 1807 99.106000 2041 3044 1 chr4A.!!$R1 1003
13 TraesCS3B01G150600 chr7B 450596148 450597155 1007 True 1805.0 1805 99.009000 2039 3044 1 chr7B.!!$R1 1005
14 TraesCS3B01G150600 chr7B 485463174 485464180 1006 False 1792.0 1792 98.811000 2039 3044 1 chr7B.!!$F2 1005
15 TraesCS3B01G150600 chr7B 123768890 123769905 1015 False 1783.0 1783 98.425000 2034 3044 1 chr7B.!!$F1 1010
16 TraesCS3B01G150600 chr4B 28227436 28228444 1008 True 1805.0 1805 99.009000 2039 3044 1 chr4B.!!$R1 1005
17 TraesCS3B01G150600 chr2B 338745726 338746732 1006 True 1805.0 1805 99.010000 2038 3044 1 chr2B.!!$R1 1006
18 TraesCS3B01G150600 chr5B 560435494 560436518 1024 True 1797.0 1797 98.345000 2022 3044 1 chr5B.!!$R1 1022
19 TraesCS3B01G150600 chr2A 116437767 116438776 1009 False 1779.0 1779 98.515000 2038 3044 1 chr2A.!!$F1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.034896 TTCGTCCCTGGAAGAACTGC 59.965 55.0 10.01 0.0 37.61 4.40 F
164 165 0.035458 GGGTTCAGACTGACTGTGGG 59.965 60.0 4.15 0.0 45.86 4.61 F
254 255 0.037419 ATGTTGGGTGAAAATGCCGC 60.037 50.0 0.00 0.0 0.00 6.53 F
317 318 0.179051 ACGCGGGGTTTAGTTTGTGA 60.179 50.0 12.47 0.0 0.00 3.58 F
318 319 0.236449 CGCGGGGTTTAGTTTGTGAC 59.764 55.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1069 1856 0.042431 ATCTGGAGGAGCAGGTCAGT 59.958 55.000 1.20 0.0 0.00 3.41 R
1445 2232 0.317160 CACGCCCTCTTCAGTGTACA 59.683 55.000 0.00 0.0 0.00 2.90 R
1517 2304 2.439507 AGATGGTACGGCTCCATTTCAT 59.560 45.455 9.07 0.0 44.52 2.57 R
1733 2520 8.825667 AACACCATAAAACAAACCATCATTAC 57.174 30.769 0.00 0.0 0.00 1.89 R
2339 3127 8.321353 TCTTCATTAAGGAGAAACTTGATGCTA 58.679 33.333 6.00 0.0 41.54 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.034896 TTCGTCCCTGGAAGAACTGC 59.965 55.000 10.01 0.00 37.61 4.40
27 28 1.376037 CGTCCCTGGAAGAACTGCC 60.376 63.158 0.00 0.00 34.07 4.85
28 29 1.831652 CGTCCCTGGAAGAACTGCCT 61.832 60.000 0.00 0.00 34.07 4.75
29 30 0.322008 GTCCCTGGAAGAACTGCCTG 60.322 60.000 0.00 0.00 34.07 4.85
30 31 0.473694 TCCCTGGAAGAACTGCCTGA 60.474 55.000 7.21 0.00 34.07 3.86
31 32 0.322008 CCCTGGAAGAACTGCCTGAC 60.322 60.000 7.21 0.00 34.07 3.51
32 33 0.322008 CCTGGAAGAACTGCCTGACC 60.322 60.000 7.21 0.00 34.07 4.02
33 34 0.671781 CTGGAAGAACTGCCTGACCG 60.672 60.000 0.22 0.00 34.07 4.79
34 35 1.376037 GGAAGAACTGCCTGACCGG 60.376 63.158 0.00 0.00 0.00 5.28
35 36 1.376037 GAAGAACTGCCTGACCGGG 60.376 63.158 6.32 0.00 0.00 5.73
36 37 2.804828 GAAGAACTGCCTGACCGGGG 62.805 65.000 6.32 0.00 0.00 5.73
56 57 4.832608 GCGAGTGGGCCGGGTTAG 62.833 72.222 2.18 0.00 0.00 2.34
57 58 4.157120 CGAGTGGGCCGGGTTAGG 62.157 72.222 2.18 0.00 0.00 2.69
84 85 2.586635 CCCGGCGCGCATTAGTTA 60.587 61.111 34.42 0.00 0.00 2.24
85 86 2.174969 CCCGGCGCGCATTAGTTAA 61.175 57.895 34.42 0.00 0.00 2.01
86 87 1.503818 CCCGGCGCGCATTAGTTAAT 61.504 55.000 34.42 0.00 0.00 1.40
87 88 0.110823 CCGGCGCGCATTAGTTAATC 60.111 55.000 34.42 10.15 0.00 1.75
88 89 0.110823 CGGCGCGCATTAGTTAATCC 60.111 55.000 34.42 9.57 0.00 3.01
89 90 0.941542 GGCGCGCATTAGTTAATCCA 59.058 50.000 34.42 0.00 0.00 3.41
90 91 1.069906 GGCGCGCATTAGTTAATCCAG 60.070 52.381 34.42 0.00 0.00 3.86
91 92 1.597663 GCGCGCATTAGTTAATCCAGT 59.402 47.619 29.10 0.00 0.00 4.00
92 93 2.348591 GCGCGCATTAGTTAATCCAGTC 60.349 50.000 29.10 0.00 0.00 3.51
93 94 2.221055 CGCGCATTAGTTAATCCAGTCC 59.779 50.000 8.75 0.00 0.00 3.85
94 95 3.202906 GCGCATTAGTTAATCCAGTCCA 58.797 45.455 0.30 0.00 0.00 4.02
95 96 3.248602 GCGCATTAGTTAATCCAGTCCAG 59.751 47.826 0.30 0.00 0.00 3.86
96 97 4.693283 CGCATTAGTTAATCCAGTCCAGA 58.307 43.478 0.00 0.00 0.00 3.86
97 98 5.116180 CGCATTAGTTAATCCAGTCCAGAA 58.884 41.667 0.00 0.00 0.00 3.02
98 99 5.584649 CGCATTAGTTAATCCAGTCCAGAAA 59.415 40.000 0.00 0.00 0.00 2.52
99 100 6.456988 CGCATTAGTTAATCCAGTCCAGAAAC 60.457 42.308 0.00 0.00 0.00 2.78
100 101 6.456988 GCATTAGTTAATCCAGTCCAGAAACG 60.457 42.308 0.00 0.00 0.00 3.60
101 102 4.618920 AGTTAATCCAGTCCAGAAACGT 57.381 40.909 0.00 0.00 0.00 3.99
102 103 4.566987 AGTTAATCCAGTCCAGAAACGTC 58.433 43.478 0.00 0.00 0.00 4.34
103 104 4.039973 AGTTAATCCAGTCCAGAAACGTCA 59.960 41.667 0.00 0.00 0.00 4.35
104 105 2.751166 ATCCAGTCCAGAAACGTCAG 57.249 50.000 0.00 0.00 0.00 3.51
105 106 0.679505 TCCAGTCCAGAAACGTCAGG 59.320 55.000 0.00 0.00 0.00 3.86
106 107 0.320771 CCAGTCCAGAAACGTCAGGG 60.321 60.000 0.00 0.00 31.33 4.45
107 108 0.679505 CAGTCCAGAAACGTCAGGGA 59.320 55.000 0.00 0.00 31.33 4.20
108 109 0.680061 AGTCCAGAAACGTCAGGGAC 59.320 55.000 16.42 16.42 44.68 4.46
109 110 0.391597 GTCCAGAAACGTCAGGGACA 59.608 55.000 18.25 0.00 44.17 4.02
110 111 1.002087 GTCCAGAAACGTCAGGGACAT 59.998 52.381 18.25 0.00 44.17 3.06
111 112 1.697432 TCCAGAAACGTCAGGGACATT 59.303 47.619 0.00 0.00 31.33 2.71
112 113 1.806542 CCAGAAACGTCAGGGACATTG 59.193 52.381 0.00 0.00 32.09 2.82
113 114 1.197721 CAGAAACGTCAGGGACATTGC 59.802 52.381 0.00 0.00 32.09 3.56
114 115 0.165944 GAAACGTCAGGGACATTGCG 59.834 55.000 0.00 0.00 32.09 4.85
115 116 0.534203 AAACGTCAGGGACATTGCGT 60.534 50.000 0.00 0.00 32.09 5.24
116 117 0.534203 AACGTCAGGGACATTGCGTT 60.534 50.000 0.00 0.00 35.28 4.84
117 118 0.534203 ACGTCAGGGACATTGCGTTT 60.534 50.000 0.00 0.00 32.09 3.60
118 119 0.165944 CGTCAGGGACATTGCGTTTC 59.834 55.000 0.00 0.00 32.09 2.78
119 120 1.523758 GTCAGGGACATTGCGTTTCT 58.476 50.000 0.00 0.00 32.09 2.52
120 121 1.464997 GTCAGGGACATTGCGTTTCTC 59.535 52.381 0.00 0.00 32.09 2.87
121 122 1.071542 TCAGGGACATTGCGTTTCTCA 59.928 47.619 0.00 0.00 0.00 3.27
122 123 1.197721 CAGGGACATTGCGTTTCTCAC 59.802 52.381 0.00 0.00 0.00 3.51
131 132 2.234613 CGTTTCTCACGTGCCATGT 58.765 52.632 11.67 0.00 44.49 3.21
132 133 0.163788 CGTTTCTCACGTGCCATGTC 59.836 55.000 11.67 0.00 44.49 3.06
133 134 1.225855 GTTTCTCACGTGCCATGTCA 58.774 50.000 11.67 0.00 0.00 3.58
134 135 1.195448 GTTTCTCACGTGCCATGTCAG 59.805 52.381 11.67 0.71 0.00 3.51
135 136 0.950555 TTCTCACGTGCCATGTCAGC 60.951 55.000 11.67 0.00 0.00 4.26
136 137 2.733671 CTCACGTGCCATGTCAGCG 61.734 63.158 11.67 0.00 0.00 5.18
137 138 2.738139 CACGTGCCATGTCAGCGA 60.738 61.111 0.82 0.00 0.00 4.93
138 139 2.030412 ACGTGCCATGTCAGCGAA 59.970 55.556 5.89 0.00 0.00 4.70
139 140 1.596752 ACGTGCCATGTCAGCGAAA 60.597 52.632 5.89 0.00 0.00 3.46
140 141 1.163420 ACGTGCCATGTCAGCGAAAA 61.163 50.000 5.89 0.00 0.00 2.29
141 142 0.725784 CGTGCCATGTCAGCGAAAAC 60.726 55.000 0.00 0.00 0.00 2.43
142 143 0.310543 GTGCCATGTCAGCGAAAACA 59.689 50.000 0.00 0.00 0.00 2.83
143 144 0.592637 TGCCATGTCAGCGAAAACAG 59.407 50.000 0.00 0.00 0.00 3.16
144 145 0.730494 GCCATGTCAGCGAAAACAGC 60.730 55.000 0.00 0.00 0.00 4.40
145 146 0.453282 CCATGTCAGCGAAAACAGCG 60.453 55.000 0.00 0.00 40.04 5.18
146 147 0.453282 CATGTCAGCGAAAACAGCGG 60.453 55.000 0.00 0.00 40.04 5.52
147 148 1.577328 ATGTCAGCGAAAACAGCGGG 61.577 55.000 0.00 0.00 40.04 6.13
148 149 2.110213 TCAGCGAAAACAGCGGGT 59.890 55.556 0.00 0.00 40.04 5.28
149 150 1.525077 TCAGCGAAAACAGCGGGTT 60.525 52.632 0.00 0.00 42.98 4.11
150 151 1.082104 CAGCGAAAACAGCGGGTTC 60.082 57.895 0.00 0.00 39.29 3.62
151 152 1.525077 AGCGAAAACAGCGGGTTCA 60.525 52.632 0.00 0.00 39.29 3.18
152 153 1.082104 GCGAAAACAGCGGGTTCAG 60.082 57.895 0.00 0.00 39.29 3.02
153 154 1.503818 GCGAAAACAGCGGGTTCAGA 61.504 55.000 0.00 0.00 39.29 3.27
154 155 0.234884 CGAAAACAGCGGGTTCAGAC 59.765 55.000 0.00 0.00 39.29 3.51
155 156 1.594331 GAAAACAGCGGGTTCAGACT 58.406 50.000 0.00 0.00 39.29 3.24
156 157 1.264288 GAAAACAGCGGGTTCAGACTG 59.736 52.381 0.00 0.00 39.29 3.51
157 158 0.468226 AAACAGCGGGTTCAGACTGA 59.532 50.000 0.00 0.00 39.29 3.41
158 159 0.249911 AACAGCGGGTTCAGACTGAC 60.250 55.000 4.15 0.67 33.35 3.51
159 160 1.115930 ACAGCGGGTTCAGACTGACT 61.116 55.000 4.15 0.00 34.25 3.41
160 161 0.668706 CAGCGGGTTCAGACTGACTG 60.669 60.000 4.15 5.18 46.97 3.51
161 162 1.115930 AGCGGGTTCAGACTGACTGT 61.116 55.000 4.15 0.00 45.86 3.55
162 163 0.946221 GCGGGTTCAGACTGACTGTG 60.946 60.000 4.15 0.00 45.86 3.66
163 164 0.319900 CGGGTTCAGACTGACTGTGG 60.320 60.000 4.15 0.00 45.86 4.17
164 165 0.035458 GGGTTCAGACTGACTGTGGG 59.965 60.000 4.15 0.00 45.86 4.61
165 166 0.603975 GGTTCAGACTGACTGTGGGC 60.604 60.000 4.15 0.00 45.86 5.36
166 167 0.603975 GTTCAGACTGACTGTGGGCC 60.604 60.000 4.15 0.00 45.86 5.80
167 168 1.053835 TTCAGACTGACTGTGGGCCA 61.054 55.000 0.00 0.00 45.86 5.36
168 169 1.475169 TCAGACTGACTGTGGGCCAG 61.475 60.000 6.40 0.00 45.86 4.85
169 170 2.219875 AGACTGACTGTGGGCCAGG 61.220 63.158 6.40 5.55 46.06 4.45
170 171 3.252284 ACTGACTGTGGGCCAGGG 61.252 66.667 6.40 5.12 46.06 4.45
171 172 4.729918 CTGACTGTGGGCCAGGGC 62.730 72.222 6.40 5.78 46.06 5.19
173 174 4.729918 GACTGTGGGCCAGGGCAG 62.730 72.222 18.24 18.24 46.06 4.85
175 176 3.970410 CTGTGGGCCAGGGCAGAA 61.970 66.667 16.36 0.00 44.11 3.02
176 177 3.506743 TGTGGGCCAGGGCAGAAA 61.507 61.111 16.36 0.00 44.11 2.52
177 178 2.991540 GTGGGCCAGGGCAGAAAC 60.992 66.667 16.36 3.52 44.11 2.78
178 179 4.659172 TGGGCCAGGGCAGAAACG 62.659 66.667 16.36 0.00 44.11 3.60
181 182 3.294493 GCCAGGGCAGAAACGCAA 61.294 61.111 5.20 0.00 41.49 4.85
182 183 2.644992 CCAGGGCAGAAACGCAAC 59.355 61.111 0.00 0.00 0.00 4.17
183 184 2.644992 CAGGGCAGAAACGCAACC 59.355 61.111 0.00 0.00 0.00 3.77
184 185 1.898574 CAGGGCAGAAACGCAACCT 60.899 57.895 0.00 0.00 0.00 3.50
185 186 0.605319 CAGGGCAGAAACGCAACCTA 60.605 55.000 0.00 0.00 0.00 3.08
186 187 0.605589 AGGGCAGAAACGCAACCTAC 60.606 55.000 0.00 0.00 0.00 3.18
187 188 1.583495 GGGCAGAAACGCAACCTACC 61.583 60.000 0.00 0.00 0.00 3.18
188 189 0.887387 GGCAGAAACGCAACCTACCA 60.887 55.000 0.00 0.00 0.00 3.25
189 190 0.237498 GCAGAAACGCAACCTACCAC 59.763 55.000 0.00 0.00 0.00 4.16
190 191 0.511221 CAGAAACGCAACCTACCACG 59.489 55.000 0.00 0.00 0.00 4.94
191 192 0.601841 AGAAACGCAACCTACCACGG 60.602 55.000 0.00 0.00 0.00 4.94
192 193 2.178892 GAAACGCAACCTACCACGGC 62.179 60.000 0.00 0.00 0.00 5.68
195 196 2.667199 GCAACCTACCACGGCGTT 60.667 61.111 11.19 0.00 0.00 4.84
196 197 2.255881 GCAACCTACCACGGCGTTT 61.256 57.895 11.19 2.28 0.00 3.60
197 198 1.864176 CAACCTACCACGGCGTTTC 59.136 57.895 11.19 0.00 0.00 2.78
198 199 1.301953 AACCTACCACGGCGTTTCC 60.302 57.895 11.19 0.00 0.00 3.13
207 208 4.337060 GGCGTTTCCGTGTTGGCC 62.337 66.667 0.00 0.00 37.80 5.36
208 209 3.587933 GCGTTTCCGTGTTGGCCA 61.588 61.111 0.00 0.00 37.80 5.36
209 210 2.637025 CGTTTCCGTGTTGGCCAG 59.363 61.111 5.11 0.00 37.80 4.85
210 211 1.890041 CGTTTCCGTGTTGGCCAGA 60.890 57.895 5.11 0.00 37.80 3.86
211 212 1.440938 CGTTTCCGTGTTGGCCAGAA 61.441 55.000 5.11 2.34 37.80 3.02
212 213 0.741915 GTTTCCGTGTTGGCCAGAAA 59.258 50.000 5.11 9.37 37.80 2.52
213 214 0.741915 TTTCCGTGTTGGCCAGAAAC 59.258 50.000 5.11 1.42 37.80 2.78
214 215 0.394488 TTCCGTGTTGGCCAGAAACA 60.394 50.000 5.11 4.80 37.80 2.83
219 220 1.604604 TGTTGGCCAGAAACACTAGC 58.395 50.000 5.11 0.00 32.71 3.42
220 221 1.142870 TGTTGGCCAGAAACACTAGCT 59.857 47.619 5.11 0.00 33.92 3.32
221 222 1.537202 GTTGGCCAGAAACACTAGCTG 59.463 52.381 5.11 0.00 33.92 4.24
222 223 0.764890 TGGCCAGAAACACTAGCTGT 59.235 50.000 0.00 0.00 33.92 4.40
223 224 1.270839 TGGCCAGAAACACTAGCTGTC 60.271 52.381 0.00 0.00 33.92 3.51
224 225 1.002544 GGCCAGAAACACTAGCTGTCT 59.997 52.381 0.00 0.00 33.92 3.41
225 226 2.342179 GCCAGAAACACTAGCTGTCTC 58.658 52.381 0.00 0.00 30.92 3.36
226 227 2.600731 CCAGAAACACTAGCTGTCTCG 58.399 52.381 0.00 0.00 30.29 4.04
227 228 2.600731 CAGAAACACTAGCTGTCTCGG 58.399 52.381 0.00 0.00 30.29 4.63
228 229 1.067495 AGAAACACTAGCTGTCTCGGC 60.067 52.381 0.00 0.00 35.73 5.54
229 230 0.388649 AAACACTAGCTGTCTCGGCG 60.389 55.000 0.00 0.00 41.21 6.46
230 231 1.524863 AACACTAGCTGTCTCGGCGT 61.525 55.000 6.85 0.00 41.21 5.68
231 232 1.213013 CACTAGCTGTCTCGGCGTT 59.787 57.895 6.85 0.00 41.21 4.84
232 233 0.388649 CACTAGCTGTCTCGGCGTTT 60.389 55.000 6.85 0.00 41.21 3.60
233 234 0.109226 ACTAGCTGTCTCGGCGTTTC 60.109 55.000 6.85 0.00 41.21 2.78
234 235 0.109272 CTAGCTGTCTCGGCGTTTCA 60.109 55.000 6.85 3.69 41.21 2.69
235 236 0.315886 TAGCTGTCTCGGCGTTTCAA 59.684 50.000 6.85 0.00 41.21 2.69
236 237 0.320771 AGCTGTCTCGGCGTTTCAAT 60.321 50.000 6.85 0.00 41.21 2.57
237 238 0.179215 GCTGTCTCGGCGTTTCAATG 60.179 55.000 6.85 0.00 0.00 2.82
238 239 1.148310 CTGTCTCGGCGTTTCAATGT 58.852 50.000 6.85 0.00 0.00 2.71
239 240 1.531149 CTGTCTCGGCGTTTCAATGTT 59.469 47.619 6.85 0.00 0.00 2.71
240 241 1.262950 TGTCTCGGCGTTTCAATGTTG 59.737 47.619 6.85 0.00 0.00 3.33
241 242 0.871722 TCTCGGCGTTTCAATGTTGG 59.128 50.000 6.85 0.00 0.00 3.77
242 243 0.109781 CTCGGCGTTTCAATGTTGGG 60.110 55.000 6.85 0.00 0.00 4.12
243 244 0.820074 TCGGCGTTTCAATGTTGGGT 60.820 50.000 6.85 0.00 0.00 4.51
244 245 0.662970 CGGCGTTTCAATGTTGGGTG 60.663 55.000 0.00 0.00 0.00 4.61
245 246 0.671251 GGCGTTTCAATGTTGGGTGA 59.329 50.000 0.00 0.00 0.00 4.02
246 247 1.067821 GGCGTTTCAATGTTGGGTGAA 59.932 47.619 0.00 0.00 31.99 3.18
247 248 2.482142 GGCGTTTCAATGTTGGGTGAAA 60.482 45.455 0.00 0.00 40.52 2.69
248 249 3.190874 GCGTTTCAATGTTGGGTGAAAA 58.809 40.909 0.71 0.00 43.40 2.29
249 250 3.807071 GCGTTTCAATGTTGGGTGAAAAT 59.193 39.130 0.71 0.00 43.40 1.82
250 251 4.318689 GCGTTTCAATGTTGGGTGAAAATG 60.319 41.667 0.71 0.00 43.40 2.32
251 252 4.318689 CGTTTCAATGTTGGGTGAAAATGC 60.319 41.667 0.71 0.00 43.40 3.56
252 253 3.399440 TCAATGTTGGGTGAAAATGCC 57.601 42.857 0.00 0.00 0.00 4.40
253 254 2.067766 CAATGTTGGGTGAAAATGCCG 58.932 47.619 0.00 0.00 0.00 5.69
254 255 0.037419 ATGTTGGGTGAAAATGCCGC 60.037 50.000 0.00 0.00 0.00 6.53
255 256 1.732683 GTTGGGTGAAAATGCCGCG 60.733 57.895 0.00 0.00 0.00 6.46
256 257 2.925262 TTGGGTGAAAATGCCGCGG 61.925 57.895 24.05 24.05 0.00 6.46
257 258 4.128388 GGGTGAAAATGCCGCGGG 62.128 66.667 29.38 8.95 0.00 6.13
258 259 4.128388 GGTGAAAATGCCGCGGGG 62.128 66.667 29.38 15.40 0.00 5.73
271 272 4.090588 CGGGGCCTGGCGTTTCTA 62.091 66.667 13.40 0.00 0.00 2.10
272 273 2.353573 GGGGCCTGGCGTTTCTAA 59.646 61.111 13.40 0.00 0.00 2.10
273 274 1.303806 GGGGCCTGGCGTTTCTAAA 60.304 57.895 13.40 0.00 0.00 1.85
274 275 0.896479 GGGGCCTGGCGTTTCTAAAA 60.896 55.000 13.40 0.00 0.00 1.52
275 276 0.963225 GGGCCTGGCGTTTCTAAAAA 59.037 50.000 13.40 0.00 0.00 1.94
276 277 1.067846 GGGCCTGGCGTTTCTAAAAAG 60.068 52.381 13.40 0.00 0.00 2.27
277 278 1.067846 GGCCTGGCGTTTCTAAAAAGG 60.068 52.381 13.40 0.00 34.21 3.11
278 279 1.611977 GCCTGGCGTTTCTAAAAAGGT 59.388 47.619 1.35 0.00 33.74 3.50
279 280 2.351447 GCCTGGCGTTTCTAAAAAGGTC 60.351 50.000 1.35 0.00 35.85 3.85
280 281 2.882137 CCTGGCGTTTCTAAAAAGGTCA 59.118 45.455 0.00 0.00 41.20 4.02
281 282 3.316868 CCTGGCGTTTCTAAAAAGGTCAA 59.683 43.478 0.50 0.00 42.38 3.18
282 283 4.202070 CCTGGCGTTTCTAAAAAGGTCAAA 60.202 41.667 0.50 0.00 42.38 2.69
283 284 5.508994 CCTGGCGTTTCTAAAAAGGTCAAAT 60.509 40.000 0.50 0.00 42.38 2.32
284 285 5.525199 TGGCGTTTCTAAAAAGGTCAAATC 58.475 37.500 0.00 0.00 40.69 2.17
285 286 4.615541 GGCGTTTCTAAAAAGGTCAAATCG 59.384 41.667 0.00 0.00 35.48 3.34
286 287 5.209977 GCGTTTCTAAAAAGGTCAAATCGT 58.790 37.500 0.00 0.00 33.74 3.73
287 288 5.115021 GCGTTTCTAAAAAGGTCAAATCGTG 59.885 40.000 0.00 0.00 33.74 4.35
288 289 6.423862 CGTTTCTAAAAAGGTCAAATCGTGA 58.576 36.000 0.00 0.00 0.00 4.35
289 290 6.908284 CGTTTCTAAAAAGGTCAAATCGTGAA 59.092 34.615 0.00 0.00 38.23 3.18
290 291 7.429920 CGTTTCTAAAAAGGTCAAATCGTGAAA 59.570 33.333 0.00 0.00 38.23 2.69
291 292 9.244799 GTTTCTAAAAAGGTCAAATCGTGAAAT 57.755 29.630 0.00 0.00 38.23 2.17
293 294 9.887406 TTCTAAAAAGGTCAAATCGTGAAATAC 57.113 29.630 0.00 0.00 38.23 1.89
294 295 9.280174 TCTAAAAAGGTCAAATCGTGAAATACT 57.720 29.630 0.00 0.00 38.23 2.12
295 296 9.893305 CTAAAAAGGTCAAATCGTGAAATACTT 57.107 29.630 0.00 0.00 38.23 2.24
297 298 9.594478 AAAAAGGTCAAATCGTGAAATACTTTT 57.406 25.926 0.00 0.00 38.48 2.27
299 300 9.673454 AAAGGTCAAATCGTGAAATACTTTTAC 57.327 29.630 0.00 0.00 38.23 2.01
304 305 3.029167 CGTGAAATACTTTTACGCGGG 57.971 47.619 12.47 0.00 43.78 6.13
305 306 2.222863 CGTGAAATACTTTTACGCGGGG 60.223 50.000 12.47 0.00 43.78 5.73
306 307 2.743664 GTGAAATACTTTTACGCGGGGT 59.256 45.455 12.47 2.46 0.00 4.95
307 308 3.189080 GTGAAATACTTTTACGCGGGGTT 59.811 43.478 12.47 0.00 0.00 4.11
308 309 3.819902 TGAAATACTTTTACGCGGGGTTT 59.180 39.130 12.47 0.00 0.00 3.27
309 310 4.999950 TGAAATACTTTTACGCGGGGTTTA 59.000 37.500 12.47 0.00 0.00 2.01
310 311 5.122082 TGAAATACTTTTACGCGGGGTTTAG 59.878 40.000 12.47 2.23 0.00 1.85
311 312 2.549064 ACTTTTACGCGGGGTTTAGT 57.451 45.000 12.47 2.92 0.00 2.24
312 313 2.849942 ACTTTTACGCGGGGTTTAGTT 58.150 42.857 12.47 0.00 0.00 2.24
313 314 3.213506 ACTTTTACGCGGGGTTTAGTTT 58.786 40.909 12.47 0.00 0.00 2.66
314 315 3.003585 ACTTTTACGCGGGGTTTAGTTTG 59.996 43.478 12.47 0.00 0.00 2.93
315 316 2.252976 TTACGCGGGGTTTAGTTTGT 57.747 45.000 12.47 0.00 0.00 2.83
316 317 1.510776 TACGCGGGGTTTAGTTTGTG 58.489 50.000 12.47 0.00 0.00 3.33
317 318 0.179051 ACGCGGGGTTTAGTTTGTGA 60.179 50.000 12.47 0.00 0.00 3.58
318 319 0.236449 CGCGGGGTTTAGTTTGTGAC 59.764 55.000 0.00 0.00 0.00 3.67
319 320 0.236449 GCGGGGTTTAGTTTGTGACG 59.764 55.000 0.00 0.00 0.00 4.35
320 321 1.868469 CGGGGTTTAGTTTGTGACGA 58.132 50.000 0.00 0.00 0.00 4.20
321 322 2.419667 CGGGGTTTAGTTTGTGACGAT 58.580 47.619 0.00 0.00 0.00 3.73
322 323 3.587923 CGGGGTTTAGTTTGTGACGATA 58.412 45.455 0.00 0.00 0.00 2.92
323 324 3.995705 CGGGGTTTAGTTTGTGACGATAA 59.004 43.478 0.00 0.00 0.00 1.75
324 325 4.451774 CGGGGTTTAGTTTGTGACGATAAA 59.548 41.667 0.00 0.00 0.00 1.40
325 326 5.615325 CGGGGTTTAGTTTGTGACGATAAAC 60.615 44.000 0.00 2.01 36.21 2.01
340 341 5.570262 CGATAAACGTTGACAAAGTCAGA 57.430 39.130 0.00 0.00 43.69 3.27
341 342 5.969741 CGATAAACGTTGACAAAGTCAGAA 58.030 37.500 0.00 0.00 43.69 3.02
342 343 6.415702 CGATAAACGTTGACAAAGTCAGAAA 58.584 36.000 0.00 0.00 43.69 2.52
343 344 6.902948 CGATAAACGTTGACAAAGTCAGAAAA 59.097 34.615 0.00 0.00 43.69 2.29
344 345 7.110216 CGATAAACGTTGACAAAGTCAGAAAAG 59.890 37.037 0.00 0.00 43.69 2.27
345 346 5.622770 AACGTTGACAAAGTCAGAAAAGT 57.377 34.783 7.23 0.00 43.69 2.66
346 347 6.730960 AACGTTGACAAAGTCAGAAAAGTA 57.269 33.333 7.23 0.00 43.69 2.24
347 348 6.730960 ACGTTGACAAAGTCAGAAAAGTAA 57.269 33.333 0.51 0.00 43.69 2.24
348 349 7.316544 ACGTTGACAAAGTCAGAAAAGTAAT 57.683 32.000 0.51 0.00 43.69 1.89
349 350 7.758495 ACGTTGACAAAGTCAGAAAAGTAATT 58.242 30.769 0.51 0.00 43.69 1.40
350 351 8.241367 ACGTTGACAAAGTCAGAAAAGTAATTT 58.759 29.630 0.51 0.00 43.69 1.82
351 352 8.734030 CGTTGACAAAGTCAGAAAAGTAATTTC 58.266 33.333 0.00 0.00 43.69 2.17
373 374 1.319614 CCCCAAATCGACGCCCAAAT 61.320 55.000 0.00 0.00 0.00 2.32
448 459 0.681564 CTACCTCCACCGCTCAGAGT 60.682 60.000 0.00 0.00 0.00 3.24
658 720 1.644337 TCTAGTAGGGTTCAGCTCCCA 59.356 52.381 11.40 0.00 46.82 4.37
664 726 3.319198 GTTCAGCTCCCACCCGGA 61.319 66.667 0.73 0.00 38.83 5.14
684 746 1.873698 TCCGCGTATTAATTCCTGCC 58.126 50.000 4.92 0.00 0.00 4.85
685 747 1.139256 TCCGCGTATTAATTCCTGCCA 59.861 47.619 4.92 0.00 0.00 4.92
692 754 5.107065 GCGTATTAATTCCTGCCATACTCAC 60.107 44.000 0.00 0.00 0.00 3.51
695 757 5.450818 TTAATTCCTGCCATACTCACCTT 57.549 39.130 0.00 0.00 0.00 3.50
703 768 1.207791 CATACTCACCTTGGCCTCCT 58.792 55.000 3.32 0.00 0.00 3.69
932 1697 1.115467 CCAGTCTGGTTCGGAGCTAT 58.885 55.000 11.09 0.00 31.35 2.97
933 1698 2.092049 TCCAGTCTGGTTCGGAGCTATA 60.092 50.000 18.65 0.00 39.03 1.31
964 1751 1.819928 ACACACACACACACACACAT 58.180 45.000 0.00 0.00 0.00 3.21
965 1752 2.979240 ACACACACACACACACACATA 58.021 42.857 0.00 0.00 0.00 2.29
969 1756 6.459923 ACACACACACACACACACATATATA 58.540 36.000 0.00 0.00 0.00 0.86
970 1757 6.589907 ACACACACACACACACACATATATAG 59.410 38.462 0.00 0.00 0.00 1.31
971 1758 6.035975 CACACACACACACACACATATATAGG 59.964 42.308 0.00 0.00 0.00 2.57
972 1759 6.071051 ACACACACACACACACATATATAGGA 60.071 38.462 0.54 0.00 0.00 2.94
973 1760 6.255670 CACACACACACACACATATATAGGAC 59.744 42.308 0.54 0.00 0.00 3.85
974 1761 6.154534 ACACACACACACACATATATAGGACT 59.845 38.462 0.54 0.00 0.00 3.85
975 1762 6.697455 CACACACACACACATATATAGGACTC 59.303 42.308 0.54 0.00 0.00 3.36
976 1763 6.183360 ACACACACACACATATATAGGACTCC 60.183 42.308 0.54 0.00 0.00 3.85
977 1764 6.040955 CACACACACACATATATAGGACTCCT 59.959 42.308 2.31 2.31 37.71 3.69
978 1765 6.265649 ACACACACACATATATAGGACTCCTC 59.734 42.308 0.00 0.00 34.61 3.71
979 1766 6.265422 CACACACACATATATAGGACTCCTCA 59.735 42.308 0.00 0.00 34.61 3.86
980 1767 6.839134 ACACACACATATATAGGACTCCTCAA 59.161 38.462 0.00 0.00 34.61 3.02
981 1768 7.510685 ACACACACATATATAGGACTCCTCAAT 59.489 37.037 0.00 0.00 34.61 2.57
982 1769 8.370940 CACACACATATATAGGACTCCTCAATT 58.629 37.037 0.00 0.00 34.61 2.32
983 1770 8.370940 ACACACATATATAGGACTCCTCAATTG 58.629 37.037 0.00 0.00 34.61 2.32
984 1771 8.588472 CACACATATATAGGACTCCTCAATTGA 58.412 37.037 8.12 8.12 34.61 2.57
985 1772 9.159254 ACACATATATAGGACTCCTCAATTGAA 57.841 33.333 9.88 0.00 34.61 2.69
1069 1856 0.250234 CGATTGGTCCCAGCTTCAGA 59.750 55.000 0.00 0.00 0.00 3.27
1097 1884 1.133853 GCTCCTCCAGATCTTTGGCAT 60.134 52.381 0.00 0.00 38.16 4.40
1130 1917 2.496871 CTGATCTCTTCAGCTCAGGTGT 59.503 50.000 3.23 0.00 45.16 4.16
1219 2006 1.534729 CCCCTGCCTTGTTTACTCAC 58.465 55.000 0.00 0.00 0.00 3.51
1225 2012 0.250553 CCTTGTTTACTCACCCGGCA 60.251 55.000 0.00 0.00 0.00 5.69
1344 2131 2.038975 TCCTCCTACGGCTGGCTT 59.961 61.111 0.00 0.00 0.00 4.35
1405 2192 3.900601 CCCTGTAACCAGAGCTCAGATAT 59.099 47.826 17.77 0.27 41.50 1.63
1445 2232 4.655963 ACCATGAACAATGTTAGACTGCT 58.344 39.130 0.00 0.00 34.11 4.24
1476 2263 0.969894 AGGGCGTGCTAGATGGATAC 59.030 55.000 0.00 0.00 0.00 2.24
1517 2304 4.283467 TCTCTTCTCTCGGGATTTTGACAA 59.717 41.667 0.00 0.00 0.00 3.18
2339 3127 1.588239 TGACCAAGGCTGATGATCCT 58.412 50.000 0.00 0.00 0.00 3.24
2622 3410 2.516227 TTCCTCCCACAAACACACAA 57.484 45.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.797025 CAGTTCTTCCAGGGACGAAC 58.203 55.000 23.00 23.00 46.81 3.95
7 8 0.034896 GCAGTTCTTCCAGGGACGAA 59.965 55.000 3.36 3.36 31.40 3.85
8 9 1.671742 GCAGTTCTTCCAGGGACGA 59.328 57.895 0.00 0.00 0.00 4.20
11 12 0.473694 TCAGGCAGTTCTTCCAGGGA 60.474 55.000 0.00 0.00 0.00 4.20
12 13 0.322008 GTCAGGCAGTTCTTCCAGGG 60.322 60.000 0.00 0.00 0.00 4.45
13 14 0.322008 GGTCAGGCAGTTCTTCCAGG 60.322 60.000 0.00 0.00 0.00 4.45
14 15 0.671781 CGGTCAGGCAGTTCTTCCAG 60.672 60.000 0.00 0.00 0.00 3.86
15 16 1.371183 CGGTCAGGCAGTTCTTCCA 59.629 57.895 0.00 0.00 0.00 3.53
16 17 1.376037 CCGGTCAGGCAGTTCTTCC 60.376 63.158 0.00 0.00 0.00 3.46
17 18 1.376037 CCCGGTCAGGCAGTTCTTC 60.376 63.158 0.00 0.00 39.21 2.87
18 19 2.750350 CCCGGTCAGGCAGTTCTT 59.250 61.111 0.00 0.00 39.21 2.52
19 20 3.322466 CCCCGGTCAGGCAGTTCT 61.322 66.667 0.00 0.00 39.21 3.01
39 40 4.832608 CTAACCCGGCCCACTCGC 62.833 72.222 0.00 0.00 0.00 5.03
40 41 4.157120 CCTAACCCGGCCCACTCG 62.157 72.222 0.00 0.00 0.00 4.18
41 42 4.484872 GCCTAACCCGGCCCACTC 62.485 72.222 0.00 0.00 44.41 3.51
67 68 1.503818 ATTAACTAATGCGCGCCGGG 61.504 55.000 30.77 17.90 0.00 5.73
68 69 0.110823 GATTAACTAATGCGCGCCGG 60.111 55.000 30.77 17.54 0.00 6.13
69 70 0.110823 GGATTAACTAATGCGCGCCG 60.111 55.000 30.77 16.51 0.00 6.46
70 71 0.941542 TGGATTAACTAATGCGCGCC 59.058 50.000 30.77 11.42 36.90 6.53
71 72 1.597663 ACTGGATTAACTAATGCGCGC 59.402 47.619 27.26 27.26 36.90 6.86
72 73 2.221055 GGACTGGATTAACTAATGCGCG 59.779 50.000 0.00 0.00 36.90 6.86
73 74 3.202906 TGGACTGGATTAACTAATGCGC 58.797 45.455 0.00 0.00 36.90 6.09
74 75 4.693283 TCTGGACTGGATTAACTAATGCG 58.307 43.478 0.00 0.00 36.90 4.73
75 76 6.456988 CGTTTCTGGACTGGATTAACTAATGC 60.457 42.308 0.00 0.00 34.99 3.56
76 77 6.594159 ACGTTTCTGGACTGGATTAACTAATG 59.406 38.462 0.00 0.00 0.00 1.90
77 78 6.708285 ACGTTTCTGGACTGGATTAACTAAT 58.292 36.000 0.00 0.00 0.00 1.73
78 79 6.105397 ACGTTTCTGGACTGGATTAACTAA 57.895 37.500 0.00 0.00 0.00 2.24
79 80 5.244402 TGACGTTTCTGGACTGGATTAACTA 59.756 40.000 0.00 0.00 0.00 2.24
80 81 4.039973 TGACGTTTCTGGACTGGATTAACT 59.960 41.667 0.00 0.00 0.00 2.24
81 82 4.312443 TGACGTTTCTGGACTGGATTAAC 58.688 43.478 0.00 0.00 0.00 2.01
82 83 4.562757 CCTGACGTTTCTGGACTGGATTAA 60.563 45.833 0.00 0.00 42.26 1.40
83 84 3.056107 CCTGACGTTTCTGGACTGGATTA 60.056 47.826 0.00 0.00 42.26 1.75
84 85 2.289694 CCTGACGTTTCTGGACTGGATT 60.290 50.000 0.00 0.00 42.26 3.01
85 86 1.276421 CCTGACGTTTCTGGACTGGAT 59.724 52.381 0.00 0.00 42.26 3.41
86 87 0.679505 CCTGACGTTTCTGGACTGGA 59.320 55.000 0.00 0.00 42.26 3.86
87 88 0.320771 CCCTGACGTTTCTGGACTGG 60.321 60.000 0.00 0.00 42.26 4.00
88 89 0.679505 TCCCTGACGTTTCTGGACTG 59.320 55.000 0.00 0.00 42.26 3.51
89 90 0.680061 GTCCCTGACGTTTCTGGACT 59.320 55.000 15.87 0.00 42.26 3.85
90 91 0.391597 TGTCCCTGACGTTTCTGGAC 59.608 55.000 16.14 16.14 42.26 4.02
91 92 1.348064 ATGTCCCTGACGTTTCTGGA 58.652 50.000 0.00 0.00 42.26 3.86
92 93 1.806542 CAATGTCCCTGACGTTTCTGG 59.193 52.381 0.00 0.00 39.41 3.86
93 94 1.197721 GCAATGTCCCTGACGTTTCTG 59.802 52.381 0.00 0.00 39.41 3.02
94 95 1.523758 GCAATGTCCCTGACGTTTCT 58.476 50.000 0.00 0.00 39.41 2.52
95 96 0.165944 CGCAATGTCCCTGACGTTTC 59.834 55.000 0.00 0.00 39.41 2.78
96 97 0.534203 ACGCAATGTCCCTGACGTTT 60.534 50.000 0.00 0.00 39.41 3.60
97 98 0.534203 AACGCAATGTCCCTGACGTT 60.534 50.000 0.00 0.00 41.72 3.99
98 99 0.534203 AAACGCAATGTCCCTGACGT 60.534 50.000 0.00 0.00 34.95 4.34
99 100 0.165944 GAAACGCAATGTCCCTGACG 59.834 55.000 0.00 0.00 34.95 4.35
100 101 1.464997 GAGAAACGCAATGTCCCTGAC 59.535 52.381 0.00 0.00 0.00 3.51
101 102 1.071542 TGAGAAACGCAATGTCCCTGA 59.928 47.619 0.00 0.00 0.00 3.86
102 103 1.197721 GTGAGAAACGCAATGTCCCTG 59.802 52.381 0.00 0.00 0.00 4.45
103 104 1.523758 GTGAGAAACGCAATGTCCCT 58.476 50.000 0.00 0.00 0.00 4.20
104 105 0.165944 CGTGAGAAACGCAATGTCCC 59.834 55.000 0.00 0.00 46.99 4.46
105 106 3.657537 CGTGAGAAACGCAATGTCC 57.342 52.632 0.00 0.00 46.99 4.02
114 115 1.195448 CTGACATGGCACGTGAGAAAC 59.805 52.381 22.23 0.00 0.00 2.78
115 116 1.511850 CTGACATGGCACGTGAGAAA 58.488 50.000 22.23 0.50 0.00 2.52
116 117 0.950555 GCTGACATGGCACGTGAGAA 60.951 55.000 22.23 3.41 0.00 2.87
117 118 1.374631 GCTGACATGGCACGTGAGA 60.375 57.895 22.23 4.28 0.00 3.27
118 119 2.733671 CGCTGACATGGCACGTGAG 61.734 63.158 22.23 6.78 0.00 3.51
119 120 2.707529 TTCGCTGACATGGCACGTGA 62.708 55.000 22.23 14.21 0.00 4.35
120 121 1.840630 TTTCGCTGACATGGCACGTG 61.841 55.000 12.28 12.28 0.00 4.49
121 122 1.163420 TTTTCGCTGACATGGCACGT 61.163 50.000 18.67 0.00 0.00 4.49
122 123 0.725784 GTTTTCGCTGACATGGCACG 60.726 55.000 14.86 14.86 0.00 5.34
123 124 0.310543 TGTTTTCGCTGACATGGCAC 59.689 50.000 0.00 0.00 0.00 5.01
124 125 0.592637 CTGTTTTCGCTGACATGGCA 59.407 50.000 0.00 0.00 0.00 4.92
125 126 0.730494 GCTGTTTTCGCTGACATGGC 60.730 55.000 0.00 0.00 0.00 4.40
126 127 0.453282 CGCTGTTTTCGCTGACATGG 60.453 55.000 0.00 0.00 0.00 3.66
127 128 0.453282 CCGCTGTTTTCGCTGACATG 60.453 55.000 0.00 0.00 0.00 3.21
128 129 1.577328 CCCGCTGTTTTCGCTGACAT 61.577 55.000 0.00 0.00 0.00 3.06
129 130 2.250939 CCCGCTGTTTTCGCTGACA 61.251 57.895 0.00 0.00 0.00 3.58
130 131 1.782028 AACCCGCTGTTTTCGCTGAC 61.782 55.000 0.00 0.00 31.47 3.51
131 132 1.503818 GAACCCGCTGTTTTCGCTGA 61.504 55.000 0.00 0.00 37.29 4.26
132 133 1.082104 GAACCCGCTGTTTTCGCTG 60.082 57.895 0.00 0.00 37.29 5.18
133 134 1.507141 CTGAACCCGCTGTTTTCGCT 61.507 55.000 0.00 0.00 37.29 4.93
134 135 1.082104 CTGAACCCGCTGTTTTCGC 60.082 57.895 0.00 0.00 37.29 4.70
135 136 0.234884 GTCTGAACCCGCTGTTTTCG 59.765 55.000 0.00 0.00 37.29 3.46
136 137 1.264288 CAGTCTGAACCCGCTGTTTTC 59.736 52.381 0.00 0.00 37.29 2.29
137 138 1.134220 TCAGTCTGAACCCGCTGTTTT 60.134 47.619 0.00 0.00 37.29 2.43
138 139 0.468226 TCAGTCTGAACCCGCTGTTT 59.532 50.000 0.00 0.00 37.29 2.83
139 140 0.249911 GTCAGTCTGAACCCGCTGTT 60.250 55.000 3.51 0.00 40.81 3.16
140 141 1.115930 AGTCAGTCTGAACCCGCTGT 61.116 55.000 3.51 0.00 0.00 4.40
141 142 0.668706 CAGTCAGTCTGAACCCGCTG 60.669 60.000 3.51 3.64 46.27 5.18
142 143 1.115930 ACAGTCAGTCTGAACCCGCT 61.116 55.000 3.51 0.00 46.27 5.52
143 144 0.946221 CACAGTCAGTCTGAACCCGC 60.946 60.000 3.51 0.00 46.27 6.13
144 145 0.319900 CCACAGTCAGTCTGAACCCG 60.320 60.000 3.51 0.00 46.27 5.28
145 146 0.035458 CCCACAGTCAGTCTGAACCC 59.965 60.000 3.51 0.00 46.27 4.11
146 147 0.603975 GCCCACAGTCAGTCTGAACC 60.604 60.000 3.51 0.00 46.27 3.62
147 148 0.603975 GGCCCACAGTCAGTCTGAAC 60.604 60.000 3.51 0.00 46.27 3.18
148 149 1.053835 TGGCCCACAGTCAGTCTGAA 61.054 55.000 3.51 0.00 46.27 3.02
149 150 1.459348 TGGCCCACAGTCAGTCTGA 60.459 57.895 0.00 0.00 46.27 3.27
150 151 2.460662 CCTGGCCCACAGTCAGTCTG 62.461 65.000 0.00 0.00 46.06 3.51
151 152 2.219875 CCTGGCCCACAGTCAGTCT 61.220 63.158 0.00 0.00 46.06 3.24
152 153 2.348998 CCTGGCCCACAGTCAGTC 59.651 66.667 0.00 0.00 46.06 3.51
153 154 3.252284 CCCTGGCCCACAGTCAGT 61.252 66.667 0.00 0.00 46.06 3.41
154 155 4.729918 GCCCTGGCCCACAGTCAG 62.730 72.222 0.00 0.00 46.06 3.51
156 157 4.729918 CTGCCCTGGCCCACAGTC 62.730 72.222 5.57 0.00 46.06 3.51
159 160 3.506743 TTTCTGCCCTGGCCCACA 61.507 61.111 5.57 0.00 41.09 4.17
160 161 2.991540 GTTTCTGCCCTGGCCCAC 60.992 66.667 5.57 0.00 41.09 4.61
161 162 4.659172 CGTTTCTGCCCTGGCCCA 62.659 66.667 5.57 0.00 41.09 5.36
164 165 3.294493 TTGCGTTTCTGCCCTGGC 61.294 61.111 0.00 0.00 42.35 4.85
165 166 2.644992 GTTGCGTTTCTGCCCTGG 59.355 61.111 0.00 0.00 0.00 4.45
166 167 0.605319 TAGGTTGCGTTTCTGCCCTG 60.605 55.000 0.00 0.00 30.49 4.45
167 168 0.605589 GTAGGTTGCGTTTCTGCCCT 60.606 55.000 0.00 0.00 32.30 5.19
168 169 1.583495 GGTAGGTTGCGTTTCTGCCC 61.583 60.000 0.00 0.00 0.00 5.36
169 170 0.887387 TGGTAGGTTGCGTTTCTGCC 60.887 55.000 0.00 0.00 34.52 4.85
170 171 0.237498 GTGGTAGGTTGCGTTTCTGC 59.763 55.000 0.00 0.00 0.00 4.26
171 172 0.511221 CGTGGTAGGTTGCGTTTCTG 59.489 55.000 0.00 0.00 0.00 3.02
172 173 0.601841 CCGTGGTAGGTTGCGTTTCT 60.602 55.000 0.00 0.00 0.00 2.52
173 174 1.864176 CCGTGGTAGGTTGCGTTTC 59.136 57.895 0.00 0.00 0.00 2.78
174 175 2.255881 GCCGTGGTAGGTTGCGTTT 61.256 57.895 0.00 0.00 0.00 3.60
175 176 2.667199 GCCGTGGTAGGTTGCGTT 60.667 61.111 0.00 0.00 0.00 4.84
178 179 2.178892 GAAACGCCGTGGTAGGTTGC 62.179 60.000 0.00 0.00 0.00 4.17
179 180 1.571215 GGAAACGCCGTGGTAGGTTG 61.571 60.000 0.00 0.00 0.00 3.77
180 181 1.301953 GGAAACGCCGTGGTAGGTT 60.302 57.895 0.00 0.00 0.00 3.50
181 182 2.344872 GGAAACGCCGTGGTAGGT 59.655 61.111 0.00 0.00 0.00 3.08
193 194 0.741915 TTTCTGGCCAACACGGAAAC 59.258 50.000 7.01 0.00 38.06 2.78
194 195 0.741915 GTTTCTGGCCAACACGGAAA 59.258 50.000 7.01 10.07 40.01 3.13
195 196 0.394488 TGTTTCTGGCCAACACGGAA 60.394 50.000 7.01 3.13 36.56 4.30
196 197 1.098712 GTGTTTCTGGCCAACACGGA 61.099 55.000 20.42 5.51 43.37 4.69
197 198 1.358759 GTGTTTCTGGCCAACACGG 59.641 57.895 20.42 3.02 43.37 4.94
200 201 1.604604 GCTAGTGTTTCTGGCCAACA 58.395 50.000 7.01 5.61 43.45 3.33
206 207 2.600731 CGAGACAGCTAGTGTTTCTGG 58.399 52.381 11.44 0.00 40.56 3.86
207 208 2.600731 CCGAGACAGCTAGTGTTTCTG 58.399 52.381 11.44 4.37 40.56 3.02
208 209 1.067495 GCCGAGACAGCTAGTGTTTCT 60.067 52.381 11.44 0.52 40.56 2.52
209 210 1.351153 GCCGAGACAGCTAGTGTTTC 58.649 55.000 0.00 0.00 40.56 2.78
210 211 0.388649 CGCCGAGACAGCTAGTGTTT 60.389 55.000 0.00 0.00 40.56 2.83
211 212 1.213013 CGCCGAGACAGCTAGTGTT 59.787 57.895 0.00 0.00 40.56 3.32
212 213 1.524863 AACGCCGAGACAGCTAGTGT 61.525 55.000 0.00 0.00 44.49 3.55
213 214 0.388649 AAACGCCGAGACAGCTAGTG 60.389 55.000 0.00 0.00 0.00 2.74
214 215 0.109226 GAAACGCCGAGACAGCTAGT 60.109 55.000 0.00 0.00 0.00 2.57
215 216 0.109272 TGAAACGCCGAGACAGCTAG 60.109 55.000 0.00 0.00 0.00 3.42
216 217 0.315886 TTGAAACGCCGAGACAGCTA 59.684 50.000 0.00 0.00 0.00 3.32
217 218 0.320771 ATTGAAACGCCGAGACAGCT 60.321 50.000 0.00 0.00 0.00 4.24
218 219 0.179215 CATTGAAACGCCGAGACAGC 60.179 55.000 0.00 0.00 0.00 4.40
219 220 1.148310 ACATTGAAACGCCGAGACAG 58.852 50.000 0.00 0.00 0.00 3.51
220 221 1.262950 CAACATTGAAACGCCGAGACA 59.737 47.619 0.00 0.00 0.00 3.41
221 222 1.399727 CCAACATTGAAACGCCGAGAC 60.400 52.381 0.00 0.00 0.00 3.36
222 223 0.871722 CCAACATTGAAACGCCGAGA 59.128 50.000 0.00 0.00 0.00 4.04
223 224 0.109781 CCCAACATTGAAACGCCGAG 60.110 55.000 0.00 0.00 0.00 4.63
224 225 0.820074 ACCCAACATTGAAACGCCGA 60.820 50.000 0.00 0.00 0.00 5.54
225 226 0.662970 CACCCAACATTGAAACGCCG 60.663 55.000 0.00 0.00 0.00 6.46
226 227 0.671251 TCACCCAACATTGAAACGCC 59.329 50.000 0.00 0.00 0.00 5.68
227 228 2.500509 TTCACCCAACATTGAAACGC 57.499 45.000 0.00 0.00 0.00 4.84
228 229 4.318689 GCATTTTCACCCAACATTGAAACG 60.319 41.667 0.00 0.00 40.56 3.60
229 230 4.024133 GGCATTTTCACCCAACATTGAAAC 60.024 41.667 0.00 0.00 40.56 2.78
230 231 4.133078 GGCATTTTCACCCAACATTGAAA 58.867 39.130 0.00 0.00 39.42 2.69
231 232 3.737850 GGCATTTTCACCCAACATTGAA 58.262 40.909 0.00 0.00 0.00 2.69
232 233 2.288702 CGGCATTTTCACCCAACATTGA 60.289 45.455 0.00 0.00 0.00 2.57
233 234 2.067766 CGGCATTTTCACCCAACATTG 58.932 47.619 0.00 0.00 0.00 2.82
234 235 1.607767 GCGGCATTTTCACCCAACATT 60.608 47.619 0.00 0.00 0.00 2.71
235 236 0.037419 GCGGCATTTTCACCCAACAT 60.037 50.000 0.00 0.00 0.00 2.71
236 237 1.365633 GCGGCATTTTCACCCAACA 59.634 52.632 0.00 0.00 0.00 3.33
237 238 1.732683 CGCGGCATTTTCACCCAAC 60.733 57.895 0.00 0.00 0.00 3.77
238 239 2.647875 CGCGGCATTTTCACCCAA 59.352 55.556 0.00 0.00 0.00 4.12
239 240 3.369400 CCGCGGCATTTTCACCCA 61.369 61.111 14.67 0.00 0.00 4.51
240 241 4.128388 CCCGCGGCATTTTCACCC 62.128 66.667 22.85 0.00 0.00 4.61
241 242 4.128388 CCCCGCGGCATTTTCACC 62.128 66.667 22.85 0.00 0.00 4.02
254 255 3.615509 TTAGAAACGCCAGGCCCCG 62.616 63.158 5.63 2.16 0.00 5.73
255 256 0.896479 TTTTAGAAACGCCAGGCCCC 60.896 55.000 5.63 0.00 0.00 5.80
256 257 0.963225 TTTTTAGAAACGCCAGGCCC 59.037 50.000 5.63 0.00 0.00 5.80
257 258 1.067846 CCTTTTTAGAAACGCCAGGCC 60.068 52.381 5.63 0.00 0.00 5.19
258 259 1.611977 ACCTTTTTAGAAACGCCAGGC 59.388 47.619 0.00 0.00 0.00 4.85
259 260 2.882137 TGACCTTTTTAGAAACGCCAGG 59.118 45.455 0.00 0.00 0.00 4.45
260 261 4.561735 TTGACCTTTTTAGAAACGCCAG 57.438 40.909 0.00 0.00 0.00 4.85
261 262 4.985538 TTTGACCTTTTTAGAAACGCCA 57.014 36.364 0.00 0.00 0.00 5.69
262 263 4.615541 CGATTTGACCTTTTTAGAAACGCC 59.384 41.667 0.00 0.00 0.00 5.68
263 264 5.115021 CACGATTTGACCTTTTTAGAAACGC 59.885 40.000 0.00 0.00 0.00 4.84
264 265 6.423862 TCACGATTTGACCTTTTTAGAAACG 58.576 36.000 0.00 0.00 0.00 3.60
265 266 8.623310 TTTCACGATTTGACCTTTTTAGAAAC 57.377 30.769 0.00 0.00 32.26 2.78
267 268 9.887406 GTATTTCACGATTTGACCTTTTTAGAA 57.113 29.630 0.00 0.00 32.26 2.10
268 269 9.280174 AGTATTTCACGATTTGACCTTTTTAGA 57.720 29.630 0.00 0.00 32.26 2.10
269 270 9.893305 AAGTATTTCACGATTTGACCTTTTTAG 57.107 29.630 0.00 0.00 32.26 1.85
271 272 9.594478 AAAAGTATTTCACGATTTGACCTTTTT 57.406 25.926 0.00 0.00 37.28 1.94
273 274 9.673454 GTAAAAGTATTTCACGATTTGACCTTT 57.327 29.630 0.00 0.00 37.28 3.11
274 275 8.013378 CGTAAAAGTATTTCACGATTTGACCTT 58.987 33.333 0.00 0.00 37.28 3.50
275 276 7.515643 CGTAAAAGTATTTCACGATTTGACCT 58.484 34.615 0.00 0.00 37.28 3.85
276 277 6.247791 GCGTAAAAGTATTTCACGATTTGACC 59.752 38.462 2.24 0.00 37.28 4.02
277 278 6.023564 CGCGTAAAAGTATTTCACGATTTGAC 60.024 38.462 0.00 0.00 37.28 3.18
278 279 6.010675 CGCGTAAAAGTATTTCACGATTTGA 58.989 36.000 0.00 0.00 37.28 2.69
279 280 5.224313 CCGCGTAAAAGTATTTCACGATTTG 59.776 40.000 4.92 0.00 37.28 2.32
280 281 5.318349 CCGCGTAAAAGTATTTCACGATTT 58.682 37.500 4.92 0.00 37.28 2.17
281 282 4.201744 CCCGCGTAAAAGTATTTCACGATT 60.202 41.667 4.92 0.00 37.28 3.34
282 283 3.307782 CCCGCGTAAAAGTATTTCACGAT 59.692 43.478 4.92 0.00 37.28 3.73
283 284 2.667481 CCCGCGTAAAAGTATTTCACGA 59.333 45.455 4.92 0.00 37.28 4.35
284 285 2.222863 CCCCGCGTAAAAGTATTTCACG 60.223 50.000 4.92 0.00 37.28 4.35
285 286 2.743664 ACCCCGCGTAAAAGTATTTCAC 59.256 45.455 4.92 0.00 37.28 3.18
286 287 3.056588 ACCCCGCGTAAAAGTATTTCA 57.943 42.857 4.92 0.00 37.28 2.69
287 288 4.424061 AAACCCCGCGTAAAAGTATTTC 57.576 40.909 4.92 0.00 37.28 2.17
288 289 5.003160 ACTAAACCCCGCGTAAAAGTATTT 58.997 37.500 4.92 0.00 42.41 1.40
289 290 4.578871 ACTAAACCCCGCGTAAAAGTATT 58.421 39.130 4.92 0.00 0.00 1.89
290 291 4.206477 ACTAAACCCCGCGTAAAAGTAT 57.794 40.909 4.92 0.00 0.00 2.12
291 292 3.676291 ACTAAACCCCGCGTAAAAGTA 57.324 42.857 4.92 0.00 0.00 2.24
292 293 2.549064 ACTAAACCCCGCGTAAAAGT 57.451 45.000 4.92 0.00 0.00 2.66
293 294 3.003585 ACAAACTAAACCCCGCGTAAAAG 59.996 43.478 4.92 0.00 0.00 2.27
294 295 2.948315 ACAAACTAAACCCCGCGTAAAA 59.052 40.909 4.92 0.00 0.00 1.52
295 296 2.290093 CACAAACTAAACCCCGCGTAAA 59.710 45.455 4.92 0.00 0.00 2.01
296 297 1.872313 CACAAACTAAACCCCGCGTAA 59.128 47.619 4.92 0.00 0.00 3.18
297 298 1.069823 TCACAAACTAAACCCCGCGTA 59.930 47.619 4.92 0.00 0.00 4.42
298 299 0.179051 TCACAAACTAAACCCCGCGT 60.179 50.000 4.92 0.00 0.00 6.01
299 300 0.236449 GTCACAAACTAAACCCCGCG 59.764 55.000 0.00 0.00 0.00 6.46
300 301 0.236449 CGTCACAAACTAAACCCCGC 59.764 55.000 0.00 0.00 0.00 6.13
301 302 1.868469 TCGTCACAAACTAAACCCCG 58.132 50.000 0.00 0.00 0.00 5.73
302 303 5.615325 CGTTTATCGTCACAAACTAAACCCC 60.615 44.000 0.00 0.00 33.43 4.95
303 304 5.376537 CGTTTATCGTCACAAACTAAACCC 58.623 41.667 0.00 0.00 33.43 4.11
318 319 5.570262 TCTGACTTTGTCAACGTTTATCG 57.430 39.130 0.00 0.00 42.26 2.92
319 320 7.908601 ACTTTTCTGACTTTGTCAACGTTTATC 59.091 33.333 0.00 0.00 42.26 1.75
320 321 7.758495 ACTTTTCTGACTTTGTCAACGTTTAT 58.242 30.769 0.00 0.00 42.26 1.40
321 322 7.136289 ACTTTTCTGACTTTGTCAACGTTTA 57.864 32.000 0.00 0.00 42.26 2.01
322 323 6.009115 ACTTTTCTGACTTTGTCAACGTTT 57.991 33.333 0.00 0.00 42.26 3.60
323 324 5.622770 ACTTTTCTGACTTTGTCAACGTT 57.377 34.783 0.00 0.00 42.26 3.99
324 325 6.730960 TTACTTTTCTGACTTTGTCAACGT 57.269 33.333 2.00 0.00 42.26 3.99
325 326 8.614994 AAATTACTTTTCTGACTTTGTCAACG 57.385 30.769 2.00 0.00 42.26 4.10
326 327 8.734030 CGAAATTACTTTTCTGACTTTGTCAAC 58.266 33.333 2.00 0.00 42.26 3.18
327 328 8.455682 ACGAAATTACTTTTCTGACTTTGTCAA 58.544 29.630 2.00 0.00 42.26 3.18
328 329 7.981142 ACGAAATTACTTTTCTGACTTTGTCA 58.019 30.769 0.00 0.37 41.37 3.58
329 330 7.586664 GGACGAAATTACTTTTCTGACTTTGTC 59.413 37.037 0.00 0.00 41.37 3.18
330 331 7.415229 GGACGAAATTACTTTTCTGACTTTGT 58.585 34.615 0.00 0.00 41.37 2.83
331 332 6.856426 GGGACGAAATTACTTTTCTGACTTTG 59.144 38.462 0.00 0.00 41.37 2.77
332 333 6.016527 GGGGACGAAATTACTTTTCTGACTTT 60.017 38.462 0.00 0.00 41.37 2.66
333 334 5.472478 GGGGACGAAATTACTTTTCTGACTT 59.528 40.000 0.00 0.00 41.37 3.01
334 335 5.001874 GGGGACGAAATTACTTTTCTGACT 58.998 41.667 0.00 0.00 41.37 3.41
335 336 4.758165 TGGGGACGAAATTACTTTTCTGAC 59.242 41.667 0.00 0.00 41.37 3.51
336 337 4.975631 TGGGGACGAAATTACTTTTCTGA 58.024 39.130 0.00 0.00 41.37 3.27
337 338 5.699097 TTGGGGACGAAATTACTTTTCTG 57.301 39.130 0.00 0.00 41.37 3.02
338 339 6.349033 CGATTTGGGGACGAAATTACTTTTCT 60.349 38.462 0.00 0.00 41.37 2.52
339 340 5.798434 CGATTTGGGGACGAAATTACTTTTC 59.202 40.000 0.00 0.00 40.34 2.29
340 341 5.474189 TCGATTTGGGGACGAAATTACTTTT 59.526 36.000 0.00 0.00 37.25 2.27
341 342 5.005094 TCGATTTGGGGACGAAATTACTTT 58.995 37.500 0.00 0.00 37.25 2.66
342 343 4.393990 GTCGATTTGGGGACGAAATTACTT 59.606 41.667 0.00 0.00 37.25 2.24
343 344 3.937079 GTCGATTTGGGGACGAAATTACT 59.063 43.478 0.00 0.00 37.25 2.24
344 345 4.268767 GTCGATTTGGGGACGAAATTAC 57.731 45.455 0.00 0.00 37.25 1.89
352 353 2.822701 GGGCGTCGATTTGGGGAC 60.823 66.667 0.00 0.00 0.00 4.46
353 354 2.413211 TTTGGGCGTCGATTTGGGGA 62.413 55.000 0.00 0.00 0.00 4.81
354 355 1.319614 ATTTGGGCGTCGATTTGGGG 61.320 55.000 0.00 0.00 0.00 4.96
355 356 0.179140 CATTTGGGCGTCGATTTGGG 60.179 55.000 0.00 0.00 0.00 4.12
356 357 0.808125 TCATTTGGGCGTCGATTTGG 59.192 50.000 0.00 0.00 0.00 3.28
357 358 2.518949 CTTCATTTGGGCGTCGATTTG 58.481 47.619 0.00 0.00 0.00 2.32
358 359 1.472480 CCTTCATTTGGGCGTCGATTT 59.528 47.619 0.00 0.00 0.00 2.17
424 432 1.076632 AGCGGTGGAGGTAGGAGAG 60.077 63.158 0.00 0.00 0.00 3.20
448 459 1.613630 GGAGCAGGAGGGTTCTGGA 60.614 63.158 0.00 0.00 33.16 3.86
664 726 2.224426 TGGCAGGAATTAATACGCGGAT 60.224 45.455 12.47 3.58 0.00 4.18
684 746 1.207791 AGGAGGCCAAGGTGAGTATG 58.792 55.000 5.01 0.00 0.00 2.39
685 747 1.972588 AAGGAGGCCAAGGTGAGTAT 58.027 50.000 5.01 0.00 0.00 2.12
692 754 2.042831 CGCAGAAAGGAGGCCAAGG 61.043 63.158 5.01 0.00 0.00 3.61
695 757 1.302511 GAACGCAGAAAGGAGGCCA 60.303 57.895 5.01 0.00 0.00 5.36
703 768 0.793861 CGGGAATTCGAACGCAGAAA 59.206 50.000 0.00 0.00 0.00 2.52
850 1493 7.876936 ACTGATTACCGAGAGAAATACTGTA 57.123 36.000 0.00 0.00 0.00 2.74
952 1739 6.040955 AGGAGTCCTATATATGTGTGTGTGTG 59.959 42.308 10.94 0.00 28.47 3.82
953 1740 6.136857 AGGAGTCCTATATATGTGTGTGTGT 58.863 40.000 10.94 0.00 28.47 3.72
954 1741 6.265422 TGAGGAGTCCTATATATGTGTGTGTG 59.735 42.308 12.99 0.00 31.76 3.82
955 1742 6.373759 TGAGGAGTCCTATATATGTGTGTGT 58.626 40.000 12.99 0.00 31.76 3.72
956 1743 6.901081 TGAGGAGTCCTATATATGTGTGTG 57.099 41.667 12.99 0.00 31.76 3.82
957 1744 8.370940 CAATTGAGGAGTCCTATATATGTGTGT 58.629 37.037 12.99 0.00 31.76 3.72
959 1746 8.727100 TCAATTGAGGAGTCCTATATATGTGT 57.273 34.615 12.99 0.00 31.76 3.72
960 1747 9.429359 GTTCAATTGAGGAGTCCTATATATGTG 57.571 37.037 12.99 4.63 31.76 3.21
961 1748 9.386122 AGTTCAATTGAGGAGTCCTATATATGT 57.614 33.333 12.99 0.00 31.76 2.29
964 1751 9.083422 CAGAGTTCAATTGAGGAGTCCTATATA 57.917 37.037 12.99 0.00 31.76 0.86
965 1752 7.472663 GCAGAGTTCAATTGAGGAGTCCTATAT 60.473 40.741 12.99 5.65 31.76 0.86
969 1756 3.307339 GCAGAGTTCAATTGAGGAGTCCT 60.307 47.826 12.85 12.85 36.03 3.85
970 1757 3.006247 GCAGAGTTCAATTGAGGAGTCC 58.994 50.000 8.41 0.00 0.00 3.85
971 1758 2.670414 CGCAGAGTTCAATTGAGGAGTC 59.330 50.000 8.41 7.48 0.00 3.36
972 1759 2.300152 TCGCAGAGTTCAATTGAGGAGT 59.700 45.455 8.41 0.00 0.00 3.85
973 1760 2.964740 TCGCAGAGTTCAATTGAGGAG 58.035 47.619 8.41 0.29 0.00 3.69
974 1761 3.401033 TTCGCAGAGTTCAATTGAGGA 57.599 42.857 8.41 0.00 38.43 3.71
975 1762 4.488126 TTTTCGCAGAGTTCAATTGAGG 57.512 40.909 8.41 0.00 38.43 3.86
976 1763 4.785055 CGATTTTCGCAGAGTTCAATTGAG 59.215 41.667 8.41 0.00 38.43 3.02
977 1764 4.450757 TCGATTTTCGCAGAGTTCAATTGA 59.549 37.500 3.38 3.38 40.21 2.57
978 1765 4.711721 TCGATTTTCGCAGAGTTCAATTG 58.288 39.130 0.00 0.00 40.21 2.32
979 1766 5.327091 CATCGATTTTCGCAGAGTTCAATT 58.673 37.500 0.00 0.00 40.21 2.32
980 1767 4.201851 CCATCGATTTTCGCAGAGTTCAAT 60.202 41.667 0.00 0.00 40.21 2.57
981 1768 3.125146 CCATCGATTTTCGCAGAGTTCAA 59.875 43.478 0.00 0.00 40.21 2.69
982 1769 2.672874 CCATCGATTTTCGCAGAGTTCA 59.327 45.455 0.00 0.00 40.21 3.18
983 1770 2.930040 TCCATCGATTTTCGCAGAGTTC 59.070 45.455 0.00 0.00 40.21 3.01
984 1771 2.932614 CTCCATCGATTTTCGCAGAGTT 59.067 45.455 0.00 0.00 40.21 3.01
985 1772 2.166459 TCTCCATCGATTTTCGCAGAGT 59.834 45.455 0.00 0.00 40.21 3.24
1069 1856 0.042431 ATCTGGAGGAGCAGGTCAGT 59.958 55.000 1.20 0.00 0.00 3.41
1130 1917 1.609210 TGCCAGGATCGACAGACCA 60.609 57.895 0.00 0.00 0.00 4.02
1344 2131 1.363807 CCGCTCATCCGCAGTGATA 59.636 57.895 0.00 0.00 0.00 2.15
1405 2192 1.213296 GTTTCAGGGGGAGGCATAGA 58.787 55.000 0.00 0.00 0.00 1.98
1445 2232 0.317160 CACGCCCTCTTCAGTGTACA 59.683 55.000 0.00 0.00 0.00 2.90
1476 2263 6.983307 AGAAGAGATCCATGTAAAGAACATCG 59.017 38.462 0.00 0.00 46.15 3.84
1517 2304 2.439507 AGATGGTACGGCTCCATTTCAT 59.560 45.455 9.07 0.00 44.52 2.57
1733 2520 8.825667 AACACCATAAAACAAACCATCATTAC 57.174 30.769 0.00 0.00 0.00 1.89
2339 3127 8.321353 TCTTCATTAAGGAGAAACTTGATGCTA 58.679 33.333 6.00 0.00 41.54 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.