Multiple sequence alignment - TraesCS3B01G149300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G149300 chr3B 100.000 6309 0 0 1 6309 140849279 140855587 0.000000e+00 11651.0
1 TraesCS3B01G149300 chr3B 93.000 100 6 1 6095 6194 797463867 797463965 1.830000e-30 145.0
2 TraesCS3B01G149300 chr3D 94.334 5454 178 55 408 5790 91218176 91223569 0.000000e+00 8239.0
3 TraesCS3B01G149300 chr3D 76.099 364 71 14 3095 3450 248535603 248535958 6.500000e-40 176.0
4 TraesCS3B01G149300 chr3D 96.970 66 2 0 261 326 91211340 91211405 1.860000e-20 111.0
5 TraesCS3B01G149300 chr3A 93.155 4675 166 66 260 4837 107396941 107401558 0.000000e+00 6719.0
6 TraesCS3B01G149300 chr3A 91.203 898 47 14 5113 6010 107401910 107402775 0.000000e+00 1192.0
7 TraesCS3B01G149300 chr3A 95.161 248 12 0 4836 5083 107401662 107401909 5.930000e-105 392.0
8 TraesCS3B01G149300 chr3A 88.623 167 15 2 6109 6274 26040035 26040198 3.860000e-47 200.0
9 TraesCS3B01G149300 chr6D 85.890 978 102 21 2810 3775 83040639 83041592 0.000000e+00 1009.0
10 TraesCS3B01G149300 chr6B 91.821 379 26 3 2810 3184 157860141 157860518 2.020000e-144 523.0
11 TraesCS3B01G149300 chr6B 88.087 277 29 3 2929 3203 157948997 157949271 6.100000e-85 326.0
12 TraesCS3B01G149300 chr6B 91.429 105 6 2 6091 6194 644577156 644577258 2.370000e-29 141.0
13 TraesCS3B01G149300 chr6A 85.159 283 37 5 2987 3265 99966905 99967186 1.040000e-72 285.0
14 TraesCS3B01G149300 chr6A 96.894 161 5 0 2810 2970 99972895 99973055 2.900000e-68 270.0
15 TraesCS3B01G149300 chr6A 89.916 119 8 1 6191 6309 73067856 73067742 3.940000e-32 150.0
16 TraesCS3B01G149300 chr6A 92.000 100 7 1 2890 2988 99966702 99966801 8.530000e-29 139.0
17 TraesCS3B01G149300 chr6A 91.667 60 2 3 2987 3045 99973168 99973225 5.240000e-11 80.5
18 TraesCS3B01G149300 chr7A 100.000 84 0 0 6191 6274 663538297 663538214 8.470000e-34 156.0
19 TraesCS3B01G149300 chr7A 89.916 119 6 3 6191 6309 420780911 420780799 1.420000e-31 148.0
20 TraesCS3B01G149300 chr7A 92.308 104 7 1 6091 6194 663538331 663538229 5.100000e-31 147.0
21 TraesCS3B01G149300 chrUn 98.810 84 1 0 6191 6274 191163333 191163416 3.940000e-32 150.0
22 TraesCS3B01G149300 chrUn 97.500 40 0 1 6270 6309 17025319 17025281 4.080000e-07 67.6
23 TraesCS3B01G149300 chrUn 97.500 40 0 1 6270 6309 17027552 17027514 4.080000e-07 67.6
24 TraesCS3B01G149300 chrUn 97.500 40 0 1 6270 6309 292131127 292131165 4.080000e-07 67.6
25 TraesCS3B01G149300 chr2D 98.810 84 1 0 6191 6274 507464110 507464193 3.940000e-32 150.0
26 TraesCS3B01G149300 chr2B 98.810 84 1 0 6191 6274 436038091 436038174 3.940000e-32 150.0
27 TraesCS3B01G149300 chr2B 92.593 54 2 2 6257 6309 11089030 11088978 6.780000e-10 76.8
28 TraesCS3B01G149300 chr1B 98.810 84 1 0 6191 6274 518809649 518809566 3.940000e-32 150.0
29 TraesCS3B01G149300 chr1B 98.810 84 1 0 6191 6274 577672160 577672077 3.940000e-32 150.0
30 TraesCS3B01G149300 chr7B 92.233 103 8 0 6092 6194 697933481 697933583 5.100000e-31 147.0
31 TraesCS3B01G149300 chr5B 93.814 97 6 0 6098 6194 94384868 94384964 5.100000e-31 147.0
32 TraesCS3B01G149300 chr5B 88.034 117 12 2 6078 6194 358817061 358816947 3.070000e-28 137.0
33 TraesCS3B01G149300 chr5B 100.000 38 0 0 6272 6309 360418503 360418466 3.160000e-08 71.3
34 TraesCS3B01G149300 chr4A 90.179 112 8 3 6083 6194 642395277 642395385 6.590000e-30 143.0
35 TraesCS3B01G149300 chr5A 90.654 107 8 2 6089 6194 658989003 658989108 2.370000e-29 141.0
36 TraesCS3B01G149300 chr2A 100.000 38 0 0 6272 6309 43434064 43434027 3.160000e-08 71.3
37 TraesCS3B01G149300 chr4B 95.455 44 0 2 6266 6309 97390646 97390687 1.130000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G149300 chr3B 140849279 140855587 6308 False 11651.000000 11651 100.000 1 6309 1 chr3B.!!$F1 6308
1 TraesCS3B01G149300 chr3D 91218176 91223569 5393 False 8239.000000 8239 94.334 408 5790 1 chr3D.!!$F2 5382
2 TraesCS3B01G149300 chr3A 107396941 107402775 5834 False 2767.666667 6719 93.173 260 6010 3 chr3A.!!$F2 5750
3 TraesCS3B01G149300 chr6D 83040639 83041592 953 False 1009.000000 1009 85.890 2810 3775 1 chr6D.!!$F1 965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
46 47 0.031857 CAATGCGTGGTTGGCAGAAA 59.968 50.0 0.00 0.0 44.71 2.52 F
180 181 0.105964 AGTGCGTGCAGGAACACTTA 59.894 50.0 19.41 0.0 40.35 2.24 F
250 251 0.317160 CCGTCCCTTTTCTTTTGCCC 59.683 55.0 0.00 0.0 0.00 5.36 F
642 698 0.322546 ACACCTCCGCTCCCATTTTC 60.323 55.0 0.00 0.0 0.00 2.29 F
2218 2334 0.184933 TTTATGCCCCCAATCCCTCG 59.815 55.0 0.00 0.0 0.00 4.63 F
3631 3776 0.755686 AGCCTGGATCGAAGGTGATC 59.244 55.0 13.13 0.0 43.26 2.92 F
4727 4893 0.322648 CAGAGAGGCACATGGTCACA 59.677 55.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 1947 0.514691 GTGCCGCTGAGAACAAGAAG 59.485 55.000 0.00 0.0 0.00 2.85 R
1870 1985 2.437359 GGGCGCATTCTGCACTCT 60.437 61.111 10.83 0.0 45.36 3.24 R
2218 2334 2.241259 ACATCGCGCATAACAACAAC 57.759 45.000 8.75 0.0 0.00 3.32 R
2481 2598 5.333299 TCAGGCGTATTGTAGCTAAAGAA 57.667 39.130 0.00 0.0 0.00 2.52 R
3743 3888 2.039216 TGCCGGTCCTAAATTCACTCAA 59.961 45.455 1.90 0.0 0.00 3.02 R
5206 5478 0.886938 TGCCAATCGAACAAAGCGGA 60.887 50.000 0.00 0.0 0.00 5.54 R
5980 6253 0.260230 TGACCCTCTGTTGGCCAAAA 59.740 50.000 22.47 15.3 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.200838 TCGAGTCCAATTTATGCACTGA 57.799 40.909 0.00 0.00 0.00 3.41
23 24 4.769688 TCGAGTCCAATTTATGCACTGAT 58.230 39.130 0.00 0.00 0.00 2.90
24 25 4.811024 TCGAGTCCAATTTATGCACTGATC 59.189 41.667 0.00 0.00 0.00 2.92
25 26 4.813161 CGAGTCCAATTTATGCACTGATCT 59.187 41.667 0.00 0.00 0.00 2.75
26 27 5.985530 CGAGTCCAATTTATGCACTGATCTA 59.014 40.000 0.00 0.00 0.00 1.98
27 28 6.074088 CGAGTCCAATTTATGCACTGATCTAC 60.074 42.308 0.00 0.00 0.00 2.59
28 29 6.653020 AGTCCAATTTATGCACTGATCTACA 58.347 36.000 0.00 0.00 0.00 2.74
29 30 7.112122 AGTCCAATTTATGCACTGATCTACAA 58.888 34.615 0.00 0.00 0.00 2.41
30 31 7.776969 AGTCCAATTTATGCACTGATCTACAAT 59.223 33.333 0.00 0.00 0.00 2.71
31 32 7.859377 GTCCAATTTATGCACTGATCTACAATG 59.141 37.037 0.00 0.00 0.00 2.82
35 36 2.726555 GCACTGATCTACAATGCGTG 57.273 50.000 0.00 0.00 41.66 5.34
36 37 1.328680 GCACTGATCTACAATGCGTGG 59.671 52.381 0.00 0.00 41.66 4.94
37 38 2.621338 CACTGATCTACAATGCGTGGT 58.379 47.619 0.00 0.00 0.00 4.16
38 39 3.002791 CACTGATCTACAATGCGTGGTT 58.997 45.455 0.00 0.00 0.00 3.67
39 40 3.002791 ACTGATCTACAATGCGTGGTTG 58.997 45.455 0.00 0.00 0.00 3.77
40 41 2.352651 CTGATCTACAATGCGTGGTTGG 59.647 50.000 0.00 0.00 0.00 3.77
41 42 1.064060 GATCTACAATGCGTGGTTGGC 59.936 52.381 0.00 0.00 0.00 4.52
42 43 0.250510 TCTACAATGCGTGGTTGGCA 60.251 50.000 0.00 0.00 45.71 4.92
43 44 0.168788 CTACAATGCGTGGTTGGCAG 59.831 55.000 0.00 0.00 44.71 4.85
44 45 0.250510 TACAATGCGTGGTTGGCAGA 60.251 50.000 0.00 0.00 44.71 4.26
45 46 1.106351 ACAATGCGTGGTTGGCAGAA 61.106 50.000 0.00 0.00 44.71 3.02
46 47 0.031857 CAATGCGTGGTTGGCAGAAA 59.968 50.000 0.00 0.00 44.71 2.52
47 48 0.968405 AATGCGTGGTTGGCAGAAAT 59.032 45.000 0.00 0.00 44.71 2.17
48 49 1.832883 ATGCGTGGTTGGCAGAAATA 58.167 45.000 0.00 0.00 44.71 1.40
49 50 1.164411 TGCGTGGTTGGCAGAAATAG 58.836 50.000 0.00 0.00 35.04 1.73
50 51 1.271108 TGCGTGGTTGGCAGAAATAGA 60.271 47.619 0.00 0.00 35.04 1.98
51 52 2.017049 GCGTGGTTGGCAGAAATAGAT 58.983 47.619 0.00 0.00 0.00 1.98
52 53 3.202906 GCGTGGTTGGCAGAAATAGATA 58.797 45.455 0.00 0.00 0.00 1.98
53 54 3.002348 GCGTGGTTGGCAGAAATAGATAC 59.998 47.826 0.00 0.00 0.00 2.24
54 55 3.245284 CGTGGTTGGCAGAAATAGATACG 59.755 47.826 0.00 0.00 0.00 3.06
55 56 4.189231 GTGGTTGGCAGAAATAGATACGT 58.811 43.478 0.00 0.00 0.00 3.57
56 57 5.353938 GTGGTTGGCAGAAATAGATACGTA 58.646 41.667 0.00 0.00 0.00 3.57
57 58 5.989777 GTGGTTGGCAGAAATAGATACGTAT 59.010 40.000 8.05 8.05 0.00 3.06
58 59 6.482308 GTGGTTGGCAGAAATAGATACGTATT 59.518 38.462 9.92 2.79 0.00 1.89
59 60 6.481976 TGGTTGGCAGAAATAGATACGTATTG 59.518 38.462 9.92 3.23 0.00 1.90
60 61 6.482308 GGTTGGCAGAAATAGATACGTATTGT 59.518 38.462 9.92 3.15 0.00 2.71
61 62 7.012044 GGTTGGCAGAAATAGATACGTATTGTT 59.988 37.037 9.92 2.67 0.00 2.83
62 63 8.395633 GTTGGCAGAAATAGATACGTATTGTTT 58.604 33.333 9.92 10.75 0.00 2.83
63 64 7.915508 TGGCAGAAATAGATACGTATTGTTTG 58.084 34.615 9.92 4.20 0.00 2.93
64 65 7.011950 TGGCAGAAATAGATACGTATTGTTTGG 59.988 37.037 9.92 7.14 0.00 3.28
65 66 7.012044 GGCAGAAATAGATACGTATTGTTTGGT 59.988 37.037 9.92 0.00 0.00 3.67
66 67 7.850982 GCAGAAATAGATACGTATTGTTTGGTG 59.149 37.037 9.92 10.85 0.00 4.17
67 68 9.093970 CAGAAATAGATACGTATTGTTTGGTGA 57.906 33.333 9.92 0.00 0.00 4.02
68 69 9.095065 AGAAATAGATACGTATTGTTTGGTGAC 57.905 33.333 9.92 0.00 0.00 3.67
69 70 7.459394 AATAGATACGTATTGTTTGGTGACG 57.541 36.000 9.92 0.00 39.37 4.35
70 71 5.063180 AGATACGTATTGTTTGGTGACGA 57.937 39.130 9.92 0.00 37.00 4.20
71 72 5.472148 AGATACGTATTGTTTGGTGACGAA 58.528 37.500 9.92 0.00 37.00 3.85
77 78 1.568025 GTTTGGTGACGAACGGAGC 59.432 57.895 0.00 0.00 44.43 4.70
78 79 0.878961 GTTTGGTGACGAACGGAGCT 60.879 55.000 0.00 0.00 44.43 4.09
79 80 0.599204 TTTGGTGACGAACGGAGCTC 60.599 55.000 4.71 4.71 0.00 4.09
90 91 2.770134 CGGAGCTCGTCACTAGTCT 58.230 57.895 7.83 0.00 0.00 3.24
91 92 0.653636 CGGAGCTCGTCACTAGTCTC 59.346 60.000 7.83 0.00 0.00 3.36
92 93 1.741055 CGGAGCTCGTCACTAGTCTCT 60.741 57.143 7.83 0.00 0.00 3.10
93 94 2.361789 GGAGCTCGTCACTAGTCTCTT 58.638 52.381 7.83 0.00 0.00 2.85
94 95 2.353579 GGAGCTCGTCACTAGTCTCTTC 59.646 54.545 7.83 0.00 0.00 2.87
95 96 3.004171 GAGCTCGTCACTAGTCTCTTCA 58.996 50.000 0.00 0.00 0.00 3.02
96 97 3.616219 AGCTCGTCACTAGTCTCTTCAT 58.384 45.455 0.00 0.00 0.00 2.57
97 98 3.376859 AGCTCGTCACTAGTCTCTTCATG 59.623 47.826 0.00 0.00 0.00 3.07
98 99 3.690422 CTCGTCACTAGTCTCTTCATGC 58.310 50.000 0.00 0.00 0.00 4.06
99 100 2.423892 TCGTCACTAGTCTCTTCATGCC 59.576 50.000 0.00 0.00 0.00 4.40
100 101 2.164422 CGTCACTAGTCTCTTCATGCCA 59.836 50.000 0.00 0.00 0.00 4.92
101 102 3.516615 GTCACTAGTCTCTTCATGCCAC 58.483 50.000 0.00 0.00 0.00 5.01
102 103 3.056536 GTCACTAGTCTCTTCATGCCACA 60.057 47.826 0.00 0.00 0.00 4.17
103 104 3.771479 TCACTAGTCTCTTCATGCCACAT 59.229 43.478 0.00 0.00 0.00 3.21
104 105 3.869832 CACTAGTCTCTTCATGCCACATG 59.130 47.826 0.00 1.05 0.00 3.21
105 106 3.517100 ACTAGTCTCTTCATGCCACATGT 59.483 43.478 7.40 0.00 0.00 3.21
106 107 3.430042 AGTCTCTTCATGCCACATGTT 57.570 42.857 0.00 0.00 0.00 2.71
107 108 3.759581 AGTCTCTTCATGCCACATGTTT 58.240 40.909 0.00 0.00 0.00 2.83
108 109 3.504906 AGTCTCTTCATGCCACATGTTTG 59.495 43.478 0.00 0.00 0.00 2.93
109 110 2.821378 TCTCTTCATGCCACATGTTTGG 59.179 45.455 0.00 0.00 39.98 3.28
137 138 3.482722 TTTAGAACGGAGTGAGTAGCG 57.517 47.619 0.00 0.00 45.00 4.26
138 139 2.391616 TAGAACGGAGTGAGTAGCGA 57.608 50.000 0.00 0.00 45.00 4.93
139 140 1.531423 AGAACGGAGTGAGTAGCGAA 58.469 50.000 0.00 0.00 45.00 4.70
140 141 1.469308 AGAACGGAGTGAGTAGCGAAG 59.531 52.381 0.00 0.00 45.00 3.79
153 154 3.049674 CGAAGCAGGAGCCGCAAA 61.050 61.111 0.00 0.00 43.56 3.68
154 155 2.616330 CGAAGCAGGAGCCGCAAAA 61.616 57.895 0.00 0.00 43.56 2.44
155 156 1.081175 GAAGCAGGAGCCGCAAAAC 60.081 57.895 0.00 0.00 43.56 2.43
156 157 1.795170 GAAGCAGGAGCCGCAAAACA 61.795 55.000 0.00 0.00 43.56 2.83
157 158 1.799258 AAGCAGGAGCCGCAAAACAG 61.799 55.000 0.00 0.00 43.56 3.16
158 159 2.256461 CAGGAGCCGCAAAACAGC 59.744 61.111 0.00 0.00 0.00 4.40
159 160 2.985847 AGGAGCCGCAAAACAGCC 60.986 61.111 0.00 0.00 0.00 4.85
160 161 4.404654 GGAGCCGCAAAACAGCCG 62.405 66.667 0.00 0.00 0.00 5.52
161 162 3.353836 GAGCCGCAAAACAGCCGA 61.354 61.111 0.00 0.00 0.00 5.54
162 163 3.314388 GAGCCGCAAAACAGCCGAG 62.314 63.158 0.00 0.00 0.00 4.63
163 164 3.660111 GCCGCAAAACAGCCGAGT 61.660 61.111 0.00 0.00 0.00 4.18
164 165 2.252260 CCGCAAAACAGCCGAGTG 59.748 61.111 0.00 0.00 0.00 3.51
165 166 2.427410 CGCAAAACAGCCGAGTGC 60.427 61.111 0.00 0.00 41.71 4.40
175 176 3.414700 CCGAGTGCGTGCAGGAAC 61.415 66.667 11.29 10.42 35.23 3.62
176 177 2.661537 CGAGTGCGTGCAGGAACA 60.662 61.111 19.41 1.43 0.00 3.18
177 178 2.939022 GAGTGCGTGCAGGAACAC 59.061 61.111 19.41 13.53 37.19 3.32
178 179 1.595382 GAGTGCGTGCAGGAACACT 60.595 57.895 19.41 17.71 45.66 3.55
179 180 1.153168 AGTGCGTGCAGGAACACTT 60.153 52.632 19.41 0.00 40.35 3.16
180 181 0.105964 AGTGCGTGCAGGAACACTTA 59.894 50.000 19.41 0.00 40.35 2.24
181 182 1.156736 GTGCGTGCAGGAACACTTAT 58.843 50.000 12.75 0.00 38.45 1.73
182 183 2.028476 AGTGCGTGCAGGAACACTTATA 60.028 45.455 19.41 0.00 40.35 0.98
183 184 2.093783 GTGCGTGCAGGAACACTTATAC 59.906 50.000 12.75 0.00 38.45 1.47
184 185 2.028476 TGCGTGCAGGAACACTTATACT 60.028 45.455 11.29 0.00 38.45 2.12
185 186 2.348666 GCGTGCAGGAACACTTATACTG 59.651 50.000 11.29 0.00 38.45 2.74
186 187 3.585862 CGTGCAGGAACACTTATACTGT 58.414 45.455 0.00 0.00 38.45 3.55
187 188 4.740268 CGTGCAGGAACACTTATACTGTA 58.260 43.478 0.00 0.00 38.45 2.74
188 189 4.561606 CGTGCAGGAACACTTATACTGTAC 59.438 45.833 0.00 0.00 40.06 2.90
189 190 5.475719 GTGCAGGAACACTTATACTGTACA 58.524 41.667 0.00 0.00 42.05 2.90
190 191 5.347907 GTGCAGGAACACTTATACTGTACAC 59.652 44.000 0.00 0.00 42.05 2.90
191 192 5.245301 TGCAGGAACACTTATACTGTACACT 59.755 40.000 0.00 0.00 0.00 3.55
192 193 6.434965 TGCAGGAACACTTATACTGTACACTA 59.565 38.462 0.00 0.00 0.00 2.74
193 194 6.973474 GCAGGAACACTTATACTGTACACTAG 59.027 42.308 0.00 0.00 0.00 2.57
194 195 7.362747 GCAGGAACACTTATACTGTACACTAGT 60.363 40.741 0.00 0.00 0.00 2.57
195 196 8.182881 CAGGAACACTTATACTGTACACTAGTC 58.817 40.741 0.00 0.00 0.00 2.59
196 197 8.108364 AGGAACACTTATACTGTACACTAGTCT 58.892 37.037 0.00 0.00 0.00 3.24
197 198 9.388506 GGAACACTTATACTGTACACTAGTCTA 57.611 37.037 0.00 0.00 0.00 2.59
200 201 9.956640 ACACTTATACTGTACACTAGTCTAAGT 57.043 33.333 13.97 13.97 43.19 2.24
206 207 9.736414 ATACTGTACACTAGTCTAAGTCAAAGA 57.264 33.333 0.00 0.00 0.00 2.52
207 208 8.638629 ACTGTACACTAGTCTAAGTCAAAGAT 57.361 34.615 0.00 0.00 0.00 2.40
208 209 8.732531 ACTGTACACTAGTCTAAGTCAAAGATC 58.267 37.037 0.00 0.00 0.00 2.75
209 210 8.631480 TGTACACTAGTCTAAGTCAAAGATCA 57.369 34.615 0.00 0.00 0.00 2.92
210 211 9.244292 TGTACACTAGTCTAAGTCAAAGATCAT 57.756 33.333 0.00 0.00 0.00 2.45
214 215 9.689976 CACTAGTCTAAGTCAAAGATCATATGG 57.310 37.037 2.13 0.00 0.00 2.74
215 216 9.647918 ACTAGTCTAAGTCAAAGATCATATGGA 57.352 33.333 2.13 0.00 0.00 3.41
218 219 9.206690 AGTCTAAGTCAAAGATCATATGGAAGA 57.793 33.333 2.13 0.00 0.00 2.87
219 220 9.255304 GTCTAAGTCAAAGATCATATGGAAGAC 57.745 37.037 2.13 3.70 0.00 3.01
220 221 8.138074 TCTAAGTCAAAGATCATATGGAAGACG 58.862 37.037 2.13 0.00 0.00 4.18
221 222 6.227298 AGTCAAAGATCATATGGAAGACGT 57.773 37.500 2.13 0.00 0.00 4.34
222 223 7.348080 AGTCAAAGATCATATGGAAGACGTA 57.652 36.000 2.13 0.00 0.00 3.57
223 224 7.782049 AGTCAAAGATCATATGGAAGACGTAA 58.218 34.615 2.13 0.00 0.00 3.18
224 225 8.424918 AGTCAAAGATCATATGGAAGACGTAAT 58.575 33.333 2.13 0.00 0.00 1.89
225 226 9.046296 GTCAAAGATCATATGGAAGACGTAATT 57.954 33.333 2.13 0.00 0.00 1.40
226 227 9.613428 TCAAAGATCATATGGAAGACGTAATTT 57.387 29.630 2.13 0.00 0.00 1.82
230 231 9.838339 AGATCATATGGAAGACGTAATTTTTCT 57.162 29.630 2.13 0.00 0.00 2.52
232 233 8.433421 TCATATGGAAGACGTAATTTTTCTCC 57.567 34.615 2.13 0.00 0.00 3.71
233 234 5.796350 ATGGAAGACGTAATTTTTCTCCG 57.204 39.130 0.00 0.00 0.00 4.63
234 235 4.634199 TGGAAGACGTAATTTTTCTCCGT 58.366 39.130 0.00 0.00 0.00 4.69
235 236 4.687483 TGGAAGACGTAATTTTTCTCCGTC 59.313 41.667 0.00 0.00 45.99 4.79
236 237 4.092529 GGAAGACGTAATTTTTCTCCGTCC 59.907 45.833 6.85 0.00 46.62 4.79
237 238 3.593096 AGACGTAATTTTTCTCCGTCCC 58.407 45.455 6.85 0.00 46.62 4.46
238 239 3.260128 AGACGTAATTTTTCTCCGTCCCT 59.740 43.478 6.85 0.00 46.62 4.20
239 240 3.999001 GACGTAATTTTTCTCCGTCCCTT 59.001 43.478 0.00 0.00 41.37 3.95
240 241 4.392047 ACGTAATTTTTCTCCGTCCCTTT 58.608 39.130 0.00 0.00 0.00 3.11
241 242 4.823442 ACGTAATTTTTCTCCGTCCCTTTT 59.177 37.500 0.00 0.00 0.00 2.27
242 243 5.049198 ACGTAATTTTTCTCCGTCCCTTTTC 60.049 40.000 0.00 0.00 0.00 2.29
243 244 5.180680 CGTAATTTTTCTCCGTCCCTTTTCT 59.819 40.000 0.00 0.00 0.00 2.52
244 245 6.293790 CGTAATTTTTCTCCGTCCCTTTTCTT 60.294 38.462 0.00 0.00 0.00 2.52
245 246 6.479972 AATTTTTCTCCGTCCCTTTTCTTT 57.520 33.333 0.00 0.00 0.00 2.52
246 247 5.925506 TTTTTCTCCGTCCCTTTTCTTTT 57.074 34.783 0.00 0.00 0.00 2.27
247 248 4.911514 TTTCTCCGTCCCTTTTCTTTTG 57.088 40.909 0.00 0.00 0.00 2.44
248 249 2.227194 TCTCCGTCCCTTTTCTTTTGC 58.773 47.619 0.00 0.00 0.00 3.68
249 250 1.269723 CTCCGTCCCTTTTCTTTTGCC 59.730 52.381 0.00 0.00 0.00 4.52
250 251 0.317160 CCGTCCCTTTTCTTTTGCCC 59.683 55.000 0.00 0.00 0.00 5.36
251 252 1.328279 CGTCCCTTTTCTTTTGCCCT 58.672 50.000 0.00 0.00 0.00 5.19
252 253 1.686587 CGTCCCTTTTCTTTTGCCCTT 59.313 47.619 0.00 0.00 0.00 3.95
253 254 2.288213 CGTCCCTTTTCTTTTGCCCTTC 60.288 50.000 0.00 0.00 0.00 3.46
254 255 2.698274 GTCCCTTTTCTTTTGCCCTTCA 59.302 45.455 0.00 0.00 0.00 3.02
255 256 2.698274 TCCCTTTTCTTTTGCCCTTCAC 59.302 45.455 0.00 0.00 0.00 3.18
256 257 2.224281 CCCTTTTCTTTTGCCCTTCACC 60.224 50.000 0.00 0.00 0.00 4.02
257 258 2.224281 CCTTTTCTTTTGCCCTTCACCC 60.224 50.000 0.00 0.00 0.00 4.61
258 259 2.470057 TTTCTTTTGCCCTTCACCCT 57.530 45.000 0.00 0.00 0.00 4.34
275 276 4.468510 TCACCCTGTATGGAAGACGTATTT 59.531 41.667 0.00 0.00 38.35 1.40
286 287 2.618053 AGACGTATTTTTCCTCCGCTG 58.382 47.619 0.00 0.00 0.00 5.18
319 320 5.227908 TCTCCTCTTCATTCAAACACGTAC 58.772 41.667 0.00 0.00 0.00 3.67
320 321 5.010719 TCTCCTCTTCATTCAAACACGTACT 59.989 40.000 0.00 0.00 0.00 2.73
321 322 4.988540 TCCTCTTCATTCAAACACGTACTG 59.011 41.667 0.00 0.00 0.00 2.74
322 323 4.750098 CCTCTTCATTCAAACACGTACTGT 59.250 41.667 0.00 0.00 32.89 3.55
324 325 6.089551 CCTCTTCATTCAAACACGTACTGTAG 59.910 42.308 0.00 0.00 30.51 2.74
325 326 6.741109 TCTTCATTCAAACACGTACTGTAGA 58.259 36.000 0.00 0.00 30.51 2.59
326 327 7.375834 TCTTCATTCAAACACGTACTGTAGAT 58.624 34.615 0.00 0.00 30.51 1.98
327 328 7.541091 TCTTCATTCAAACACGTACTGTAGATC 59.459 37.037 0.00 0.00 30.51 2.75
328 329 6.683715 TCATTCAAACACGTACTGTAGATCA 58.316 36.000 0.00 0.00 30.51 2.92
351 352 2.981977 TTTGCCTTTCCGCGAGACGT 62.982 55.000 8.23 0.00 41.42 4.34
352 353 3.479269 GCCTTTCCGCGAGACGTG 61.479 66.667 8.23 0.00 41.42 4.49
361 362 1.738099 GCGAGACGTGAACAGGCAT 60.738 57.895 0.00 0.00 0.00 4.40
365 366 2.740714 GACGTGAACAGGCATCGGC 61.741 63.158 0.00 0.00 40.13 5.54
383 384 0.613012 GCAGGAATCCAAAGCACCCT 60.613 55.000 0.61 0.00 0.00 4.34
400 401 1.630244 CCTGCGCACGAAGAAAGAGG 61.630 60.000 5.66 0.00 0.00 3.69
492 533 4.362476 GCGGGCCTTGCACCTTTG 62.362 66.667 14.49 0.00 0.00 2.77
494 535 4.007644 GGGCCTTGCACCTTTGGC 62.008 66.667 0.84 0.00 44.22 4.52
516 557 3.009115 CCCGATCCCACCACCACT 61.009 66.667 0.00 0.00 0.00 4.00
517 558 2.602676 CCCGATCCCACCACCACTT 61.603 63.158 0.00 0.00 0.00 3.16
518 559 1.377202 CCGATCCCACCACCACTTG 60.377 63.158 0.00 0.00 0.00 3.16
549 590 3.341629 CCACCTGGCATCCCCACT 61.342 66.667 0.00 0.00 39.18 4.00
550 591 2.273449 CACCTGGCATCCCCACTC 59.727 66.667 0.00 0.00 39.18 3.51
625 681 4.386951 CACCGCACCCCATCGACA 62.387 66.667 0.00 0.00 0.00 4.35
642 698 0.322546 ACACCTCCGCTCCCATTTTC 60.323 55.000 0.00 0.00 0.00 2.29
643 699 1.078426 ACCTCCGCTCCCATTTTCG 60.078 57.895 0.00 0.00 0.00 3.46
668 725 3.899052 ATACTTTTCAATCGGACGGGA 57.101 42.857 0.00 0.00 0.00 5.14
894 955 2.354773 CCGATCGCTAGGGTTCGC 60.355 66.667 26.30 7.51 0.00 4.70
895 956 2.722487 CGATCGCTAGGGTTCGCT 59.278 61.111 22.28 0.00 0.00 4.93
897 958 1.007154 GATCGCTAGGGTTCGCTCC 60.007 63.158 6.70 0.00 0.00 4.70
898 959 2.734756 GATCGCTAGGGTTCGCTCCG 62.735 65.000 6.70 0.00 0.00 4.63
922 1010 4.547367 CCCCCGCGACCTCATTCC 62.547 72.222 8.23 0.00 0.00 3.01
923 1011 4.547367 CCCCGCGACCTCATTCCC 62.547 72.222 8.23 0.00 0.00 3.97
924 1012 4.547367 CCCGCGACCTCATTCCCC 62.547 72.222 8.23 0.00 0.00 4.81
971 1059 3.118629 TCGGTCCTGATCTGATTTCCTTG 60.119 47.826 0.38 0.00 0.00 3.61
975 1063 5.495640 GTCCTGATCTGATTTCCTTGTTCT 58.504 41.667 0.38 0.00 0.00 3.01
1223 1326 0.809385 CAGTACCACCACGACGAGAT 59.191 55.000 0.00 0.00 0.00 2.75
1273 1377 1.094785 ACGCAAAAATCATCTCCCCG 58.905 50.000 0.00 0.00 0.00 5.73
1329 1436 3.352648 TGTAGCTTAATTTCTGGGGTGC 58.647 45.455 0.00 0.00 0.00 5.01
1339 1446 1.544724 TCTGGGGTGCAAGTAAATGC 58.455 50.000 0.00 0.00 46.58 3.56
1358 1465 1.266891 GCGCGTACGAGATTTCCTTTG 60.267 52.381 23.53 0.00 43.93 2.77
1359 1466 1.990563 CGCGTACGAGATTTCCTTTGT 59.009 47.619 21.65 0.00 43.93 2.83
1442 1556 3.012560 CTCCCGATCATTTGGAGGC 57.987 57.895 8.87 0.00 41.64 4.70
1471 1585 0.693049 TTTCCTCCCCAGCTTCTCAC 59.307 55.000 0.00 0.00 0.00 3.51
1537 1651 7.382488 GCGTTGTATCTGTGTCATAATGTAGAT 59.618 37.037 0.00 0.00 0.00 1.98
1635 1749 3.055819 CACTAGCCAGGAAGCAGAAAGTA 60.056 47.826 0.00 0.00 34.23 2.24
1832 1947 7.488187 AACTATGCAGTATCATGACATGTTC 57.512 36.000 14.98 7.13 33.48 3.18
1841 1956 8.173775 CAGTATCATGACATGTTCTTCTTGTTC 58.826 37.037 14.98 0.00 35.12 3.18
1870 1985 1.202758 ACACTGAATCTGCCGGAAACA 60.203 47.619 5.05 0.00 0.00 2.83
1905 2020 1.250328 CCTTTGCTGATCACAAGGCA 58.750 50.000 3.41 3.41 31.31 4.75
1968 2083 8.545420 CACGTTACAGGTCACATATTTTATACC 58.455 37.037 0.00 0.00 0.00 2.73
1973 2088 7.446769 ACAGGTCACATATTTTATACCGCATA 58.553 34.615 0.00 0.00 32.18 3.14
2008 2123 2.047061 ACAGGAGTGCCACTTCAACTA 58.953 47.619 5.80 0.00 36.29 2.24
2218 2334 0.184933 TTTATGCCCCCAATCCCTCG 59.815 55.000 0.00 0.00 0.00 4.63
2398 2515 6.018180 GCCTTATACCCTATTTGAAGTCAACG 60.018 42.308 0.00 0.00 35.28 4.10
2481 2598 8.947055 AATATGCTCTTTGTTTTGTTGTTTCT 57.053 26.923 0.00 0.00 0.00 2.52
2498 2615 8.492748 TGTTGTTTCTTCTTTAGCTACAATACG 58.507 33.333 0.00 0.00 32.94 3.06
2590 2711 6.279513 TGTTGGGCTTGAATATTTAGGTTG 57.720 37.500 0.00 0.00 0.00 3.77
3018 3152 9.798994 CTAATGTTACTCGTACCTAAGAAATGT 57.201 33.333 0.00 0.00 0.00 2.71
3411 3548 3.139397 TGTCCAGGTTAACATTGGGAACT 59.861 43.478 21.48 0.81 32.76 3.01
3498 3636 6.323996 AGGGTAAAAATGCTATTTTCTAGGCC 59.676 38.462 0.00 0.00 34.51 5.19
3514 3653 5.081728 TCTAGGCCGAGGTATATTTTGCTA 58.918 41.667 13.44 0.00 0.00 3.49
3516 3655 2.735134 GGCCGAGGTATATTTTGCTACG 59.265 50.000 0.00 0.00 0.00 3.51
3525 3664 9.698617 GAGGTATATTTTGCTACGTTGTTTTAG 57.301 33.333 0.00 0.00 0.00 1.85
3549 3694 2.374184 TGTTTGTTACACCTTGCAGCT 58.626 42.857 0.00 0.00 0.00 4.24
3631 3776 0.755686 AGCCTGGATCGAAGGTGATC 59.244 55.000 13.13 0.00 43.26 2.92
3873 4039 7.496529 TCTTTGACTTTCTAGTTTGACATGG 57.503 36.000 0.00 0.00 33.84 3.66
3902 4068 6.604171 AGCTCATAATGGTGATGGTTGAATA 58.396 36.000 0.00 0.00 0.00 1.75
3968 4134 1.892474 TCCTTCCCAAATCTTTTGCCG 59.108 47.619 0.00 0.00 0.00 5.69
3999 4165 7.825331 TGTTGTTAACTATGATTTCCCAACA 57.175 32.000 7.22 0.00 37.79 3.33
4164 4330 2.159085 GCCAGAGTTACGAGCTATGGTT 60.159 50.000 16.00 0.00 44.62 3.67
4343 4509 1.404391 CTTGTGCCAGCCTGATGAATC 59.596 52.381 0.00 0.00 0.00 2.52
4516 4682 4.820897 CAGTAGCAACAATCAGACCAGTA 58.179 43.478 0.00 0.00 0.00 2.74
4659 4825 6.554982 AGCTTTCATGATAGGTACTGTATCCA 59.445 38.462 15.07 0.00 41.52 3.41
4727 4893 0.322648 CAGAGAGGCACATGGTCACA 59.677 55.000 0.00 0.00 0.00 3.58
4736 4902 2.489329 GCACATGGTCACATACTTTGCT 59.511 45.455 0.00 0.00 34.99 3.91
4760 4926 1.454295 CCTGTGCCCATGCTATGCA 60.454 57.895 0.00 0.00 44.86 3.96
5006 5277 9.122613 GAAATAAAGAAGAAACAGTCTGATTGC 57.877 33.333 6.91 0.00 36.40 3.56
5022 5293 6.922957 GTCTGATTGCATTGGTGAAACTTTTA 59.077 34.615 0.00 0.00 36.74 1.52
5087 5358 6.967135 AGTTAACTGCCACTTTACTTTAAGC 58.033 36.000 7.48 0.00 0.00 3.09
5098 5369 7.434013 CCACTTTACTTTAAGCGAAAACATGTT 59.566 33.333 4.92 4.92 0.00 2.71
5099 5370 8.259194 CACTTTACTTTAAGCGAAAACATGTTG 58.741 33.333 12.82 0.48 0.00 3.33
5100 5371 7.971722 ACTTTACTTTAAGCGAAAACATGTTGT 59.028 29.630 12.82 6.37 0.00 3.32
5240 5512 1.048724 TGGCAGGTTCTATAGCGGCT 61.049 55.000 7.98 7.98 43.63 5.52
5241 5513 0.319986 GGCAGGTTCTATAGCGGCTC 60.320 60.000 5.39 0.00 43.63 4.70
5243 5515 1.887198 GCAGGTTCTATAGCGGCTCTA 59.113 52.381 5.39 0.00 41.39 2.43
5244 5516 2.296471 GCAGGTTCTATAGCGGCTCTAA 59.704 50.000 5.39 0.00 41.39 2.10
5380 5652 6.183360 CCCTAACCAAATCGTAGTATCAGTCA 60.183 42.308 0.00 0.00 0.00 3.41
5564 5836 4.647853 TGCCTGGTAGTCGTGTTATAATCT 59.352 41.667 0.00 0.00 0.00 2.40
5671 5943 2.562298 TGATGTTGAACTGAAATGCCCC 59.438 45.455 0.00 0.00 0.00 5.80
5675 5947 1.212751 GAACTGAAATGCCCCACGC 59.787 57.895 0.00 0.00 38.31 5.34
5689 5961 1.202568 CACGCGAACTGCTGAACTG 59.797 57.895 15.93 0.00 43.27 3.16
5691 5963 0.810031 ACGCGAACTGCTGAACTGTT 60.810 50.000 15.93 0.00 42.51 3.16
5692 5964 0.383491 CGCGAACTGCTGAACTGTTG 60.383 55.000 0.00 0.00 40.19 3.33
5700 5972 1.334556 TGCTGAACTGTTGTGCACATC 59.665 47.619 22.39 20.44 33.76 3.06
5721 5993 1.271543 TGTGCCTTGCTTGTGCTCTAT 60.272 47.619 0.00 0.00 40.48 1.98
5722 5994 2.027285 TGTGCCTTGCTTGTGCTCTATA 60.027 45.455 0.00 0.00 40.48 1.31
5741 6014 4.756084 ATAGCAAGTTTTCTCACAGCAC 57.244 40.909 0.00 0.00 0.00 4.40
5748 6021 0.843309 TTTCTCACAGCACAAGGGGA 59.157 50.000 0.00 0.00 0.00 4.81
5764 6037 0.034756 GGGAATGTTTGGTTGGTGCC 59.965 55.000 0.00 0.00 0.00 5.01
5776 6049 1.080638 TTGGTGCCCAGATTTACCCT 58.919 50.000 0.00 0.00 33.81 4.34
5864 6137 2.498167 ACTCAACTCAGATGTTGCCAC 58.502 47.619 0.00 0.00 44.83 5.01
5868 6141 3.953612 TCAACTCAGATGTTGCCACTTTT 59.046 39.130 0.00 0.00 44.83 2.27
5888 6161 4.002797 GCGACCTCCAGCCAATTT 57.997 55.556 0.00 0.00 0.00 1.82
5889 6162 2.267045 GCGACCTCCAGCCAATTTT 58.733 52.632 0.00 0.00 0.00 1.82
5890 6163 0.603065 GCGACCTCCAGCCAATTTTT 59.397 50.000 0.00 0.00 0.00 1.94
5931 6204 2.438868 AAGTTCGGCTTTCATTTGGC 57.561 45.000 0.00 0.00 32.57 4.52
5935 6208 0.539438 TCGGCTTTCATTTGGCTGGT 60.539 50.000 0.00 0.00 33.63 4.00
5937 6210 1.543802 CGGCTTTCATTTGGCTGGTTA 59.456 47.619 0.00 0.00 0.00 2.85
5973 6246 6.376978 GTTGCCTATGTGATCTTGCATATTC 58.623 40.000 0.00 0.00 0.00 1.75
5975 6248 4.093998 GCCTATGTGATCTTGCATATTCCG 59.906 45.833 0.00 0.00 0.00 4.30
5980 6253 5.614308 TGTGATCTTGCATATTCCGAAGAT 58.386 37.500 0.00 0.00 37.77 2.40
5986 6259 4.305989 TGCATATTCCGAAGATTTTGGC 57.694 40.909 0.00 0.00 33.95 4.52
5994 6267 2.095059 CCGAAGATTTTGGCCAACAGAG 60.095 50.000 20.35 6.09 0.00 3.35
6010 6283 2.107204 ACAGAGGGTCAAGCAATGTCTT 59.893 45.455 0.00 0.00 0.00 3.01
6011 6284 2.486982 CAGAGGGTCAAGCAATGTCTTG 59.513 50.000 9.91 9.91 43.53 3.02
6044 6317 3.955775 GCACAAGCCAAACATGCC 58.044 55.556 0.00 0.00 33.58 4.40
6045 6318 1.668793 GCACAAGCCAAACATGCCC 60.669 57.895 0.00 0.00 33.58 5.36
6046 6319 1.373246 CACAAGCCAAACATGCCCG 60.373 57.895 0.00 0.00 0.00 6.13
6047 6320 2.432972 CAAGCCAAACATGCCCGC 60.433 61.111 0.00 0.00 0.00 6.13
6048 6321 2.601367 AAGCCAAACATGCCCGCT 60.601 55.556 0.00 0.00 0.00 5.52
6049 6322 2.209315 AAGCCAAACATGCCCGCTT 61.209 52.632 0.00 0.00 35.02 4.68
6050 6323 1.757423 AAGCCAAACATGCCCGCTTT 61.757 50.000 0.00 0.00 36.40 3.51
6051 6324 1.301637 GCCAAACATGCCCGCTTTT 60.302 52.632 0.00 0.00 0.00 2.27
6052 6325 1.291184 GCCAAACATGCCCGCTTTTC 61.291 55.000 0.00 0.00 0.00 2.29
6053 6326 0.318120 CCAAACATGCCCGCTTTTCT 59.682 50.000 0.00 0.00 0.00 2.52
6054 6327 1.669795 CCAAACATGCCCGCTTTTCTC 60.670 52.381 0.00 0.00 0.00 2.87
6055 6328 1.000385 CAAACATGCCCGCTTTTCTCA 60.000 47.619 0.00 0.00 0.00 3.27
6056 6329 1.327303 AACATGCCCGCTTTTCTCAA 58.673 45.000 0.00 0.00 0.00 3.02
6057 6330 1.327303 ACATGCCCGCTTTTCTCAAA 58.673 45.000 0.00 0.00 0.00 2.69
6058 6331 1.686052 ACATGCCCGCTTTTCTCAAAA 59.314 42.857 0.00 0.00 0.00 2.44
6059 6332 2.299867 ACATGCCCGCTTTTCTCAAAAT 59.700 40.909 0.00 0.00 0.00 1.82
6060 6333 3.244181 ACATGCCCGCTTTTCTCAAAATT 60.244 39.130 0.00 0.00 0.00 1.82
6061 6334 3.467374 TGCCCGCTTTTCTCAAAATTT 57.533 38.095 0.00 0.00 0.00 1.82
6062 6335 3.129871 TGCCCGCTTTTCTCAAAATTTG 58.870 40.909 0.00 0.00 0.00 2.32
6063 6336 3.130633 GCCCGCTTTTCTCAAAATTTGT 58.869 40.909 5.56 0.00 0.00 2.83
6064 6337 3.559655 GCCCGCTTTTCTCAAAATTTGTT 59.440 39.130 5.56 0.00 0.00 2.83
6065 6338 4.747605 GCCCGCTTTTCTCAAAATTTGTTA 59.252 37.500 5.56 0.00 0.00 2.41
6066 6339 5.408299 GCCCGCTTTTCTCAAAATTTGTTAT 59.592 36.000 5.56 0.00 0.00 1.89
6067 6340 6.618379 GCCCGCTTTTCTCAAAATTTGTTATG 60.618 38.462 5.56 0.00 0.00 1.90
6068 6341 6.423604 CCCGCTTTTCTCAAAATTTGTTATGT 59.576 34.615 5.56 0.00 0.00 2.29
6069 6342 7.282916 CCGCTTTTCTCAAAATTTGTTATGTG 58.717 34.615 5.56 0.68 0.00 3.21
6070 6343 7.282916 CGCTTTTCTCAAAATTTGTTATGTGG 58.717 34.615 5.56 0.00 0.00 4.17
6071 6344 7.042791 CGCTTTTCTCAAAATTTGTTATGTGGT 60.043 33.333 5.56 0.00 0.00 4.16
6072 6345 9.255304 GCTTTTCTCAAAATTTGTTATGTGGTA 57.745 29.630 5.56 0.00 0.00 3.25
6080 6353 9.357652 CAAAATTTGTTATGTGGTATTCTCAGG 57.642 33.333 0.00 0.00 0.00 3.86
6081 6354 7.645058 AATTTGTTATGTGGTATTCTCAGGG 57.355 36.000 0.00 0.00 0.00 4.45
6082 6355 4.150897 TGTTATGTGGTATTCTCAGGGC 57.849 45.455 0.00 0.00 0.00 5.19
6083 6356 3.131396 GTTATGTGGTATTCTCAGGGCG 58.869 50.000 0.00 0.00 0.00 6.13
6084 6357 1.204146 ATGTGGTATTCTCAGGGCGT 58.796 50.000 0.00 0.00 0.00 5.68
6085 6358 0.535335 TGTGGTATTCTCAGGGCGTC 59.465 55.000 0.00 0.00 0.00 5.19
6086 6359 0.824759 GTGGTATTCTCAGGGCGTCT 59.175 55.000 0.00 0.00 0.00 4.18
6087 6360 0.824109 TGGTATTCTCAGGGCGTCTG 59.176 55.000 0.00 0.00 44.68 3.51
6093 6366 4.355151 TCAGGGCGTCTGAGCATA 57.645 55.556 6.53 0.00 46.71 3.14
6094 6367 1.816537 TCAGGGCGTCTGAGCATAC 59.183 57.895 6.53 0.00 46.71 2.39
6095 6368 0.684479 TCAGGGCGTCTGAGCATACT 60.684 55.000 6.53 0.00 46.71 2.12
6096 6369 0.529337 CAGGGCGTCTGAGCATACTG 60.529 60.000 2.41 0.00 46.18 2.74
6097 6370 0.972983 AGGGCGTCTGAGCATACTGT 60.973 55.000 0.00 0.00 39.27 3.55
6098 6371 0.744874 GGGCGTCTGAGCATACTGTA 59.255 55.000 0.00 0.00 39.27 2.74
6099 6372 1.536284 GGGCGTCTGAGCATACTGTAC 60.536 57.143 0.00 0.00 39.27 2.90
6100 6373 1.405821 GGCGTCTGAGCATACTGTACT 59.594 52.381 0.00 0.00 39.27 2.73
6101 6374 2.617308 GGCGTCTGAGCATACTGTACTA 59.383 50.000 0.00 0.00 39.27 1.82
6102 6375 3.548415 GGCGTCTGAGCATACTGTACTAC 60.548 52.174 0.00 0.00 39.27 2.73
6103 6376 3.312973 GCGTCTGAGCATACTGTACTACT 59.687 47.826 0.00 0.00 37.05 2.57
6104 6377 4.510711 GCGTCTGAGCATACTGTACTACTA 59.489 45.833 0.00 0.00 37.05 1.82
6105 6378 5.558653 GCGTCTGAGCATACTGTACTACTAC 60.559 48.000 0.00 0.00 37.05 2.73
6106 6379 5.050227 CGTCTGAGCATACTGTACTACTACC 60.050 48.000 0.00 0.00 0.00 3.18
6107 6380 6.056884 GTCTGAGCATACTGTACTACTACCT 58.943 44.000 0.00 0.00 0.00 3.08
6108 6381 6.203338 GTCTGAGCATACTGTACTACTACCTC 59.797 46.154 0.00 0.00 0.00 3.85
6109 6382 5.374921 TGAGCATACTGTACTACTACCTCC 58.625 45.833 0.00 0.00 0.00 4.30
6110 6383 4.387598 AGCATACTGTACTACTACCTCCG 58.612 47.826 0.00 0.00 0.00 4.63
6111 6384 4.133078 GCATACTGTACTACTACCTCCGT 58.867 47.826 0.00 0.00 0.00 4.69
6112 6385 4.213059 GCATACTGTACTACTACCTCCGTC 59.787 50.000 0.00 0.00 0.00 4.79
6113 6386 5.609423 CATACTGTACTACTACCTCCGTCT 58.391 45.833 0.00 0.00 0.00 4.18
6114 6387 3.871485 ACTGTACTACTACCTCCGTCTG 58.129 50.000 0.00 0.00 0.00 3.51
6115 6388 3.204526 CTGTACTACTACCTCCGTCTGG 58.795 54.545 0.00 0.00 0.00 3.86
6116 6389 2.840038 TGTACTACTACCTCCGTCTGGA 59.160 50.000 0.00 0.00 43.88 3.86
6117 6390 3.264193 TGTACTACTACCTCCGTCTGGAA 59.736 47.826 0.00 0.00 45.87 3.53
6118 6391 3.446442 ACTACTACCTCCGTCTGGAAA 57.554 47.619 0.00 0.00 45.87 3.13
6119 6392 3.978610 ACTACTACCTCCGTCTGGAAAT 58.021 45.455 0.00 0.00 45.87 2.17
6120 6393 5.121380 ACTACTACCTCCGTCTGGAAATA 57.879 43.478 0.00 0.00 45.87 1.40
6121 6394 4.886489 ACTACTACCTCCGTCTGGAAATAC 59.114 45.833 0.00 0.00 45.87 1.89
6122 6395 3.978610 ACTACCTCCGTCTGGAAATACT 58.021 45.455 0.00 0.00 45.87 2.12
6123 6396 4.351127 ACTACCTCCGTCTGGAAATACTT 58.649 43.478 0.00 0.00 45.87 2.24
6124 6397 3.611766 ACCTCCGTCTGGAAATACTTG 57.388 47.619 0.00 0.00 45.87 3.16
6125 6398 2.904434 ACCTCCGTCTGGAAATACTTGT 59.096 45.455 0.00 0.00 45.87 3.16
6126 6399 3.056035 ACCTCCGTCTGGAAATACTTGTC 60.056 47.826 0.00 0.00 45.87 3.18
6127 6400 3.056107 CCTCCGTCTGGAAATACTTGTCA 60.056 47.826 0.00 0.00 45.87 3.58
6128 6401 4.383118 CCTCCGTCTGGAAATACTTGTCAT 60.383 45.833 0.00 0.00 45.87 3.06
6129 6402 4.755411 TCCGTCTGGAAATACTTGTCATC 58.245 43.478 0.00 0.00 42.85 2.92
6130 6403 4.221924 TCCGTCTGGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 42.85 3.07
6131 6404 4.935205 CCGTCTGGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 37.49 2.57
6132 6405 5.411361 CCGTCTGGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 37.49 2.69
6133 6406 6.072728 CCGTCTGGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 37.49 2.44
6134 6407 7.017645 CGTCTGGAAATACTTGTCATCAAAAG 58.982 38.462 0.00 0.00 32.87 2.27
6135 6408 7.308435 GTCTGGAAATACTTGTCATCAAAAGG 58.692 38.462 0.00 0.00 32.87 3.11
6136 6409 6.434028 TCTGGAAATACTTGTCATCAAAAGGG 59.566 38.462 0.00 0.00 32.87 3.95
6137 6410 6.310941 TGGAAATACTTGTCATCAAAAGGGA 58.689 36.000 0.00 0.00 32.87 4.20
6138 6411 6.208599 TGGAAATACTTGTCATCAAAAGGGAC 59.791 38.462 0.00 0.00 32.87 4.46
6139 6412 6.208599 GGAAATACTTGTCATCAAAAGGGACA 59.791 38.462 0.00 0.00 39.60 4.02
6140 6413 7.255801 GGAAATACTTGTCATCAAAAGGGACAA 60.256 37.037 0.00 0.00 46.09 3.18
6267 6540 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
6268 6541 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
6270 6543 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
6271 6544 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
6286 6559 8.354711 TGATGACAAGTATCTAGATACATCCC 57.645 38.462 33.87 23.01 44.58 3.85
6287 6560 8.173412 TGATGACAAGTATCTAGATACATCCCT 58.827 37.037 33.87 20.79 44.58 4.20
6288 6561 8.964533 ATGACAAGTATCTAGATACATCCCTT 57.035 34.615 33.87 21.17 44.58 3.95
6289 6562 8.783660 TGACAAGTATCTAGATACATCCCTTT 57.216 34.615 33.87 20.60 44.58 3.11
6290 6563 9.213777 TGACAAGTATCTAGATACATCCCTTTT 57.786 33.333 33.87 20.04 44.58 2.27
6306 6579 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
6307 6580 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.925610 TGTAGATCAGTGCATAAATTGGAC 57.074 37.500 0.00 0.00 46.30 4.02
6 7 7.933396 CATTGTAGATCAGTGCATAAATTGGA 58.067 34.615 0.00 0.00 0.00 3.53
17 18 2.621338 ACCACGCATTGTAGATCAGTG 58.379 47.619 0.00 0.00 36.94 3.66
18 19 3.002791 CAACCACGCATTGTAGATCAGT 58.997 45.455 0.00 0.00 0.00 3.41
19 20 2.352651 CCAACCACGCATTGTAGATCAG 59.647 50.000 0.00 0.00 0.00 2.90
20 21 2.355197 CCAACCACGCATTGTAGATCA 58.645 47.619 0.00 0.00 0.00 2.92
21 22 1.064060 GCCAACCACGCATTGTAGATC 59.936 52.381 0.00 0.00 0.00 2.75
22 23 1.094785 GCCAACCACGCATTGTAGAT 58.905 50.000 0.00 0.00 0.00 1.98
23 24 0.250510 TGCCAACCACGCATTGTAGA 60.251 50.000 0.00 0.00 0.00 2.59
24 25 0.168788 CTGCCAACCACGCATTGTAG 59.831 55.000 0.00 0.00 35.25 2.74
25 26 0.250510 TCTGCCAACCACGCATTGTA 60.251 50.000 0.00 0.00 35.25 2.41
26 27 1.106351 TTCTGCCAACCACGCATTGT 61.106 50.000 0.00 0.00 35.25 2.71
27 28 0.031857 TTTCTGCCAACCACGCATTG 59.968 50.000 0.00 0.00 35.25 2.82
28 29 0.968405 ATTTCTGCCAACCACGCATT 59.032 45.000 0.00 0.00 35.25 3.56
29 30 1.745087 CTATTTCTGCCAACCACGCAT 59.255 47.619 0.00 0.00 35.25 4.73
30 31 1.164411 CTATTTCTGCCAACCACGCA 58.836 50.000 0.00 0.00 34.41 5.24
31 32 1.448985 TCTATTTCTGCCAACCACGC 58.551 50.000 0.00 0.00 0.00 5.34
32 33 3.245284 CGTATCTATTTCTGCCAACCACG 59.755 47.826 0.00 0.00 0.00 4.94
33 34 4.189231 ACGTATCTATTTCTGCCAACCAC 58.811 43.478 0.00 0.00 0.00 4.16
34 35 4.481368 ACGTATCTATTTCTGCCAACCA 57.519 40.909 0.00 0.00 0.00 3.67
35 36 6.482308 ACAATACGTATCTATTTCTGCCAACC 59.518 38.462 8.86 0.00 0.00 3.77
36 37 7.478520 ACAATACGTATCTATTTCTGCCAAC 57.521 36.000 8.86 0.00 0.00 3.77
37 38 8.394877 CAAACAATACGTATCTATTTCTGCCAA 58.605 33.333 8.86 0.00 0.00 4.52
38 39 7.011950 CCAAACAATACGTATCTATTTCTGCCA 59.988 37.037 8.86 0.00 0.00 4.92
39 40 7.012044 ACCAAACAATACGTATCTATTTCTGCC 59.988 37.037 8.86 0.00 0.00 4.85
40 41 7.850982 CACCAAACAATACGTATCTATTTCTGC 59.149 37.037 8.86 0.00 0.00 4.26
41 42 9.093970 TCACCAAACAATACGTATCTATTTCTG 57.906 33.333 8.86 4.13 0.00 3.02
42 43 9.095065 GTCACCAAACAATACGTATCTATTTCT 57.905 33.333 8.86 0.00 0.00 2.52
43 44 8.054236 CGTCACCAAACAATACGTATCTATTTC 58.946 37.037 8.86 0.00 0.00 2.17
44 45 7.760794 TCGTCACCAAACAATACGTATCTATTT 59.239 33.333 8.86 7.12 35.21 1.40
45 46 7.259882 TCGTCACCAAACAATACGTATCTATT 58.740 34.615 8.86 0.99 35.21 1.73
46 47 6.798482 TCGTCACCAAACAATACGTATCTAT 58.202 36.000 8.86 0.00 35.21 1.98
47 48 6.193514 TCGTCACCAAACAATACGTATCTA 57.806 37.500 8.86 0.00 35.21 1.98
48 49 5.063180 TCGTCACCAAACAATACGTATCT 57.937 39.130 8.86 0.00 35.21 1.98
49 50 5.544621 GTTCGTCACCAAACAATACGTATC 58.455 41.667 8.86 0.00 35.21 2.24
50 51 4.090354 CGTTCGTCACCAAACAATACGTAT 59.910 41.667 1.14 1.14 35.21 3.06
51 52 3.424861 CGTTCGTCACCAAACAATACGTA 59.575 43.478 0.00 0.00 35.21 3.57
52 53 2.219216 CGTTCGTCACCAAACAATACGT 59.781 45.455 0.00 0.00 35.21 3.57
53 54 2.410517 CCGTTCGTCACCAAACAATACG 60.411 50.000 0.00 0.00 34.99 3.06
54 55 2.801679 TCCGTTCGTCACCAAACAATAC 59.198 45.455 0.00 0.00 0.00 1.89
55 56 3.061322 CTCCGTTCGTCACCAAACAATA 58.939 45.455 0.00 0.00 0.00 1.90
56 57 1.871039 CTCCGTTCGTCACCAAACAAT 59.129 47.619 0.00 0.00 0.00 2.71
57 58 1.292061 CTCCGTTCGTCACCAAACAA 58.708 50.000 0.00 0.00 0.00 2.83
58 59 1.155424 GCTCCGTTCGTCACCAAACA 61.155 55.000 0.00 0.00 0.00 2.83
59 60 0.878961 AGCTCCGTTCGTCACCAAAC 60.879 55.000 0.00 0.00 0.00 2.93
60 61 0.599204 GAGCTCCGTTCGTCACCAAA 60.599 55.000 0.87 0.00 0.00 3.28
61 62 1.006571 GAGCTCCGTTCGTCACCAA 60.007 57.895 0.87 0.00 0.00 3.67
62 63 2.649034 GAGCTCCGTTCGTCACCA 59.351 61.111 0.87 0.00 0.00 4.17
63 64 2.504244 CGAGCTCCGTTCGTCACC 60.504 66.667 8.47 0.00 31.98 4.02
72 73 0.653636 GAGACTAGTGACGAGCTCCG 59.346 60.000 8.47 6.07 45.44 4.63
73 74 2.032680 AGAGACTAGTGACGAGCTCC 57.967 55.000 8.47 0.00 0.00 4.70
74 75 3.004171 TGAAGAGACTAGTGACGAGCTC 58.996 50.000 0.00 2.73 0.00 4.09
75 76 3.060736 TGAAGAGACTAGTGACGAGCT 57.939 47.619 0.00 0.00 0.00 4.09
76 77 3.690422 CATGAAGAGACTAGTGACGAGC 58.310 50.000 0.00 0.00 0.00 5.03
77 78 3.488384 GGCATGAAGAGACTAGTGACGAG 60.488 52.174 0.00 0.00 0.00 4.18
78 79 2.423892 GGCATGAAGAGACTAGTGACGA 59.576 50.000 0.00 0.00 0.00 4.20
79 80 2.164422 TGGCATGAAGAGACTAGTGACG 59.836 50.000 0.00 0.00 0.00 4.35
80 81 3.056536 TGTGGCATGAAGAGACTAGTGAC 60.057 47.826 0.00 0.00 0.00 3.67
81 82 3.165071 TGTGGCATGAAGAGACTAGTGA 58.835 45.455 0.00 0.00 0.00 3.41
82 83 3.599730 TGTGGCATGAAGAGACTAGTG 57.400 47.619 0.00 0.00 0.00 2.74
83 84 3.517100 ACATGTGGCATGAAGAGACTAGT 59.483 43.478 15.03 0.00 0.00 2.57
84 85 4.134379 ACATGTGGCATGAAGAGACTAG 57.866 45.455 15.03 0.00 0.00 2.57
85 86 4.558226 AACATGTGGCATGAAGAGACTA 57.442 40.909 15.03 0.00 0.00 2.59
86 87 3.430042 AACATGTGGCATGAAGAGACT 57.570 42.857 15.03 0.00 0.00 3.24
87 88 3.366679 CCAAACATGTGGCATGAAGAGAC 60.367 47.826 15.03 0.00 0.00 3.36
88 89 2.821378 CCAAACATGTGGCATGAAGAGA 59.179 45.455 15.03 0.00 0.00 3.10
89 90 3.226346 CCAAACATGTGGCATGAAGAG 57.774 47.619 15.03 3.36 0.00 2.85
115 116 4.022935 TCGCTACTCACTCCGTTCTAAAAA 60.023 41.667 0.00 0.00 0.00 1.94
116 117 3.503363 TCGCTACTCACTCCGTTCTAAAA 59.497 43.478 0.00 0.00 0.00 1.52
117 118 3.076621 TCGCTACTCACTCCGTTCTAAA 58.923 45.455 0.00 0.00 0.00 1.85
118 119 2.703416 TCGCTACTCACTCCGTTCTAA 58.297 47.619 0.00 0.00 0.00 2.10
119 120 2.391616 TCGCTACTCACTCCGTTCTA 57.608 50.000 0.00 0.00 0.00 2.10
120 121 1.469308 CTTCGCTACTCACTCCGTTCT 59.531 52.381 0.00 0.00 0.00 3.01
121 122 1.897641 CTTCGCTACTCACTCCGTTC 58.102 55.000 0.00 0.00 0.00 3.95
122 123 0.109226 GCTTCGCTACTCACTCCGTT 60.109 55.000 0.00 0.00 0.00 4.44
123 124 1.241990 TGCTTCGCTACTCACTCCGT 61.242 55.000 0.00 0.00 0.00 4.69
124 125 0.524392 CTGCTTCGCTACTCACTCCG 60.524 60.000 0.00 0.00 0.00 4.63
125 126 0.179124 CCTGCTTCGCTACTCACTCC 60.179 60.000 0.00 0.00 0.00 3.85
126 127 0.811915 TCCTGCTTCGCTACTCACTC 59.188 55.000 0.00 0.00 0.00 3.51
127 128 0.814457 CTCCTGCTTCGCTACTCACT 59.186 55.000 0.00 0.00 0.00 3.41
128 129 0.804156 GCTCCTGCTTCGCTACTCAC 60.804 60.000 0.00 0.00 36.03 3.51
129 130 1.513158 GCTCCTGCTTCGCTACTCA 59.487 57.895 0.00 0.00 36.03 3.41
130 131 1.227118 GGCTCCTGCTTCGCTACTC 60.227 63.158 0.00 0.00 39.59 2.59
131 132 2.896443 GGCTCCTGCTTCGCTACT 59.104 61.111 0.00 0.00 39.59 2.57
132 133 2.583593 CGGCTCCTGCTTCGCTAC 60.584 66.667 0.00 0.00 39.59 3.58
133 134 4.514577 GCGGCTCCTGCTTCGCTA 62.515 66.667 0.00 0.00 43.18 4.26
136 137 2.616330 TTTTGCGGCTCCTGCTTCG 61.616 57.895 0.00 0.00 39.59 3.79
137 138 1.081175 GTTTTGCGGCTCCTGCTTC 60.081 57.895 0.00 0.00 39.59 3.86
138 139 1.799258 CTGTTTTGCGGCTCCTGCTT 61.799 55.000 0.00 0.00 39.59 3.91
139 140 2.203337 TGTTTTGCGGCTCCTGCT 60.203 55.556 0.00 0.00 39.59 4.24
140 141 2.256461 CTGTTTTGCGGCTCCTGC 59.744 61.111 0.00 0.00 38.76 4.85
141 142 2.256461 GCTGTTTTGCGGCTCCTG 59.744 61.111 0.00 0.00 45.76 3.86
147 148 2.252260 CACTCGGCTGTTTTGCGG 59.748 61.111 0.00 0.00 35.08 5.69
148 149 2.427410 GCACTCGGCTGTTTTGCG 60.427 61.111 0.00 0.00 40.25 4.85
149 150 2.427410 CGCACTCGGCTGTTTTGC 60.427 61.111 0.00 0.00 41.67 3.68
150 151 1.369209 CACGCACTCGGCTGTTTTG 60.369 57.895 0.00 0.00 41.67 2.44
151 152 3.022287 CACGCACTCGGCTGTTTT 58.978 55.556 0.00 0.00 41.67 2.43
152 153 3.649986 GCACGCACTCGGCTGTTT 61.650 61.111 0.00 0.00 41.67 2.83
153 154 4.908687 TGCACGCACTCGGCTGTT 62.909 61.111 0.00 0.00 41.67 3.16
158 159 3.414700 GTTCCTGCACGCACTCGG 61.415 66.667 0.00 0.00 40.69 4.63
159 160 2.661537 TGTTCCTGCACGCACTCG 60.662 61.111 0.00 0.00 42.43 4.18
160 161 1.160329 AAGTGTTCCTGCACGCACTC 61.160 55.000 7.77 0.00 43.61 3.51
161 162 0.105964 TAAGTGTTCCTGCACGCACT 59.894 50.000 0.00 0.00 43.61 4.40
162 163 1.156736 ATAAGTGTTCCTGCACGCAC 58.843 50.000 0.00 0.00 43.61 5.34
163 164 2.028476 AGTATAAGTGTTCCTGCACGCA 60.028 45.455 0.00 0.00 43.61 5.24
164 165 2.348666 CAGTATAAGTGTTCCTGCACGC 59.651 50.000 0.00 0.00 43.61 5.34
165 166 3.585862 ACAGTATAAGTGTTCCTGCACG 58.414 45.455 0.00 0.00 43.61 5.34
166 167 5.347907 GTGTACAGTATAAGTGTTCCTGCAC 59.652 44.000 0.00 0.00 39.51 4.57
167 168 5.245301 AGTGTACAGTATAAGTGTTCCTGCA 59.755 40.000 0.00 0.00 33.15 4.41
168 169 5.721232 AGTGTACAGTATAAGTGTTCCTGC 58.279 41.667 0.00 0.00 33.15 4.85
169 170 8.053026 ACTAGTGTACAGTATAAGTGTTCCTG 57.947 38.462 10.83 0.00 33.15 3.86
170 171 8.108364 AGACTAGTGTACAGTATAAGTGTTCCT 58.892 37.037 10.83 0.00 33.15 3.36
171 172 8.278729 AGACTAGTGTACAGTATAAGTGTTCC 57.721 38.462 10.83 0.00 33.15 3.62
180 181 9.736414 TCTTTGACTTAGACTAGTGTACAGTAT 57.264 33.333 10.83 0.00 0.00 2.12
181 182 9.736414 ATCTTTGACTTAGACTAGTGTACAGTA 57.264 33.333 10.01 10.01 0.00 2.74
182 183 8.638629 ATCTTTGACTTAGACTAGTGTACAGT 57.361 34.615 8.55 8.55 0.00 3.55
183 184 8.731605 TGATCTTTGACTTAGACTAGTGTACAG 58.268 37.037 0.00 4.10 0.00 2.74
184 185 8.631480 TGATCTTTGACTTAGACTAGTGTACA 57.369 34.615 0.00 0.00 0.00 2.90
188 189 9.689976 CCATATGATCTTTGACTTAGACTAGTG 57.310 37.037 0.00 0.00 0.00 2.74
189 190 9.647918 TCCATATGATCTTTGACTTAGACTAGT 57.352 33.333 3.65 0.00 0.00 2.57
192 193 9.206690 TCTTCCATATGATCTTTGACTTAGACT 57.793 33.333 3.65 0.00 0.00 3.24
193 194 9.255304 GTCTTCCATATGATCTTTGACTTAGAC 57.745 37.037 3.65 0.00 0.00 2.59
194 195 8.138074 CGTCTTCCATATGATCTTTGACTTAGA 58.862 37.037 3.65 0.00 0.00 2.10
195 196 7.923344 ACGTCTTCCATATGATCTTTGACTTAG 59.077 37.037 3.65 0.00 0.00 2.18
196 197 7.782049 ACGTCTTCCATATGATCTTTGACTTA 58.218 34.615 3.65 0.00 0.00 2.24
197 198 6.644347 ACGTCTTCCATATGATCTTTGACTT 58.356 36.000 3.65 0.00 0.00 3.01
198 199 6.227298 ACGTCTTCCATATGATCTTTGACT 57.773 37.500 3.65 0.00 0.00 3.41
199 200 8.594881 ATTACGTCTTCCATATGATCTTTGAC 57.405 34.615 3.65 3.31 0.00 3.18
200 201 9.613428 AAATTACGTCTTCCATATGATCTTTGA 57.387 29.630 3.65 0.00 0.00 2.69
204 205 9.838339 AGAAAAATTACGTCTTCCATATGATCT 57.162 29.630 3.65 0.00 0.00 2.75
206 207 9.057089 GGAGAAAAATTACGTCTTCCATATGAT 57.943 33.333 3.65 0.00 0.00 2.45
207 208 7.223971 CGGAGAAAAATTACGTCTTCCATATGA 59.776 37.037 3.65 0.00 0.00 2.15
208 209 7.011109 ACGGAGAAAAATTACGTCTTCCATATG 59.989 37.037 0.00 0.00 31.39 1.78
209 210 7.046033 ACGGAGAAAAATTACGTCTTCCATAT 58.954 34.615 0.00 0.00 31.39 1.78
210 211 6.400568 ACGGAGAAAAATTACGTCTTCCATA 58.599 36.000 0.00 0.00 31.39 2.74
211 212 5.243207 ACGGAGAAAAATTACGTCTTCCAT 58.757 37.500 0.00 0.00 31.39 3.41
212 213 4.634199 ACGGAGAAAAATTACGTCTTCCA 58.366 39.130 0.00 0.00 31.39 3.53
218 219 3.690475 AGGGACGGAGAAAAATTACGT 57.310 42.857 0.00 0.00 40.85 3.57
219 220 5.180680 AGAAAAGGGACGGAGAAAAATTACG 59.819 40.000 0.00 0.00 0.00 3.18
220 221 6.570672 AGAAAAGGGACGGAGAAAAATTAC 57.429 37.500 0.00 0.00 0.00 1.89
221 222 7.591421 AAAGAAAAGGGACGGAGAAAAATTA 57.409 32.000 0.00 0.00 0.00 1.40
222 223 6.479972 AAAGAAAAGGGACGGAGAAAAATT 57.520 33.333 0.00 0.00 0.00 1.82
223 224 6.280643 CAAAAGAAAAGGGACGGAGAAAAAT 58.719 36.000 0.00 0.00 0.00 1.82
224 225 5.656480 CAAAAGAAAAGGGACGGAGAAAAA 58.344 37.500 0.00 0.00 0.00 1.94
225 226 4.440940 GCAAAAGAAAAGGGACGGAGAAAA 60.441 41.667 0.00 0.00 0.00 2.29
226 227 3.067601 GCAAAAGAAAAGGGACGGAGAAA 59.932 43.478 0.00 0.00 0.00 2.52
227 228 2.621526 GCAAAAGAAAAGGGACGGAGAA 59.378 45.455 0.00 0.00 0.00 2.87
228 229 2.227194 GCAAAAGAAAAGGGACGGAGA 58.773 47.619 0.00 0.00 0.00 3.71
229 230 1.269723 GGCAAAAGAAAAGGGACGGAG 59.730 52.381 0.00 0.00 0.00 4.63
230 231 1.324383 GGCAAAAGAAAAGGGACGGA 58.676 50.000 0.00 0.00 0.00 4.69
231 232 0.317160 GGGCAAAAGAAAAGGGACGG 59.683 55.000 0.00 0.00 0.00 4.79
232 233 1.328279 AGGGCAAAAGAAAAGGGACG 58.672 50.000 0.00 0.00 0.00 4.79
233 234 2.698274 TGAAGGGCAAAAGAAAAGGGAC 59.302 45.455 0.00 0.00 0.00 4.46
234 235 2.698274 GTGAAGGGCAAAAGAAAAGGGA 59.302 45.455 0.00 0.00 0.00 4.20
235 236 2.224281 GGTGAAGGGCAAAAGAAAAGGG 60.224 50.000 0.00 0.00 0.00 3.95
236 237 2.224281 GGGTGAAGGGCAAAAGAAAAGG 60.224 50.000 0.00 0.00 0.00 3.11
237 238 2.700371 AGGGTGAAGGGCAAAAGAAAAG 59.300 45.455 0.00 0.00 0.00 2.27
238 239 2.433970 CAGGGTGAAGGGCAAAAGAAAA 59.566 45.455 0.00 0.00 0.00 2.29
239 240 2.038659 CAGGGTGAAGGGCAAAAGAAA 58.961 47.619 0.00 0.00 0.00 2.52
240 241 1.063266 ACAGGGTGAAGGGCAAAAGAA 60.063 47.619 0.00 0.00 0.00 2.52
241 242 0.555769 ACAGGGTGAAGGGCAAAAGA 59.444 50.000 0.00 0.00 0.00 2.52
242 243 2.286365 TACAGGGTGAAGGGCAAAAG 57.714 50.000 0.00 0.00 0.00 2.27
243 244 2.524306 CATACAGGGTGAAGGGCAAAA 58.476 47.619 0.00 0.00 0.00 2.44
244 245 1.272425 CCATACAGGGTGAAGGGCAAA 60.272 52.381 0.00 0.00 0.00 3.68
245 246 0.331278 CCATACAGGGTGAAGGGCAA 59.669 55.000 0.00 0.00 0.00 4.52
246 247 0.548926 TCCATACAGGGTGAAGGGCA 60.549 55.000 0.00 0.00 38.24 5.36
247 248 0.623723 TTCCATACAGGGTGAAGGGC 59.376 55.000 0.00 0.00 38.24 5.19
248 249 2.092914 GTCTTCCATACAGGGTGAAGGG 60.093 54.545 0.00 0.00 38.24 3.95
249 250 2.418746 CGTCTTCCATACAGGGTGAAGG 60.419 54.545 0.00 0.00 38.24 3.46
250 251 2.233922 ACGTCTTCCATACAGGGTGAAG 59.766 50.000 0.00 0.00 38.24 3.02
251 252 2.253610 ACGTCTTCCATACAGGGTGAA 58.746 47.619 0.00 0.00 38.24 3.18
252 253 1.933021 ACGTCTTCCATACAGGGTGA 58.067 50.000 0.00 0.00 38.24 4.02
253 254 4.402056 AATACGTCTTCCATACAGGGTG 57.598 45.455 0.00 0.00 38.24 4.61
254 255 5.431179 AAAATACGTCTTCCATACAGGGT 57.569 39.130 0.00 0.00 38.24 4.34
255 256 5.296035 GGAAAAATACGTCTTCCATACAGGG 59.704 44.000 11.65 0.00 38.80 4.45
256 257 6.113411 AGGAAAAATACGTCTTCCATACAGG 58.887 40.000 16.45 0.00 41.00 4.00
257 258 6.258068 GGAGGAAAAATACGTCTTCCATACAG 59.742 42.308 16.45 0.00 41.00 2.74
258 259 6.110707 GGAGGAAAAATACGTCTTCCATACA 58.889 40.000 16.45 0.00 41.00 2.29
275 276 1.398692 AAGCAAAACAGCGGAGGAAA 58.601 45.000 0.00 0.00 40.15 3.13
286 287 6.507023 TGAATGAAGAGGAGAAAAGCAAAAC 58.493 36.000 0.00 0.00 0.00 2.43
351 352 2.046023 CCTGCCGATGCCTGTTCA 60.046 61.111 0.00 0.00 36.33 3.18
352 353 0.749454 ATTCCTGCCGATGCCTGTTC 60.749 55.000 0.00 0.00 36.33 3.18
361 362 0.960364 GTGCTTTGGATTCCTGCCGA 60.960 55.000 3.95 0.00 0.00 5.54
365 366 1.180029 CAGGGTGCTTTGGATTCCTG 58.820 55.000 3.95 0.00 36.28 3.86
383 384 2.317609 GCCTCTTTCTTCGTGCGCA 61.318 57.895 5.66 5.66 0.00 6.09
388 389 1.470890 CTCTCTCGCCTCTTTCTTCGT 59.529 52.381 0.00 0.00 0.00 3.85
494 535 3.781307 TGGTGGGATCGGGAAGCG 61.781 66.667 0.00 0.00 0.00 4.68
516 557 3.286751 GGCCAGCTGCGACAACAA 61.287 61.111 8.66 0.00 42.61 2.83
517 558 4.560743 TGGCCAGCTGCGACAACA 62.561 61.111 8.66 0.00 42.61 3.33
518 559 4.030452 GTGGCCAGCTGCGACAAC 62.030 66.667 5.11 0.00 46.81 3.32
547 588 2.757917 GAGCCAGCGAGGAGGAGT 60.758 66.667 2.12 0.00 41.22 3.85
549 590 2.441164 GAGAGCCAGCGAGGAGGA 60.441 66.667 2.12 0.00 41.22 3.71
550 591 3.535962 GGAGAGCCAGCGAGGAGG 61.536 72.222 2.12 0.00 41.22 4.30
625 681 1.078426 CGAAAATGGGAGCGGAGGT 60.078 57.895 0.00 0.00 46.54 3.85
642 698 5.051907 CCGTCCGATTGAAAAGTATTCTACG 60.052 44.000 0.00 0.00 0.00 3.51
643 699 5.233689 CCCGTCCGATTGAAAAGTATTCTAC 59.766 44.000 0.00 0.00 0.00 2.59
668 725 2.918802 TAGGGTGGGTGCGTTCGT 60.919 61.111 0.00 0.00 0.00 3.85
905 966 4.547367 GGAATGAGGTCGCGGGGG 62.547 72.222 6.13 0.00 0.00 5.40
949 1037 2.752030 AGGAAATCAGATCAGGACCGA 58.248 47.619 0.00 0.00 0.00 4.69
953 1041 5.768980 AGAACAAGGAAATCAGATCAGGA 57.231 39.130 0.00 0.00 0.00 3.86
971 1059 1.196127 CAACCCTACGCGGAAAAGAAC 59.804 52.381 12.47 0.00 33.16 3.01
975 1063 1.302671 CCCAACCCTACGCGGAAAA 60.303 57.895 12.47 0.00 33.16 2.29
1223 1326 3.640407 GGTCTCTGTGCCTGGCCA 61.640 66.667 17.53 4.71 0.00 5.36
1245 1348 6.293462 GGAGATGATTTTTGCGTTATACCTCC 60.293 42.308 0.00 0.00 0.00 4.30
1258 1362 4.535526 CCAAAACGGGGAGATGATTTTT 57.464 40.909 0.00 0.00 0.00 1.94
1273 1377 3.311091 AGGGACTAAAAACCCCCAAAAC 58.689 45.455 0.00 0.00 46.64 2.43
1329 1436 1.915350 TCTCGTACGCGCATTTACTTG 59.085 47.619 11.24 1.54 38.14 3.16
1339 1446 1.990563 ACAAAGGAAATCTCGTACGCG 59.009 47.619 11.24 3.53 39.92 6.01
1358 1465 1.071107 TGCGACAAACGAACGAATCAC 60.071 47.619 0.14 0.00 45.77 3.06
1359 1466 1.209998 TGCGACAAACGAACGAATCA 58.790 45.000 0.14 0.00 45.77 2.57
1463 1577 1.975363 GCGTGCAGATGGTGAGAAGC 61.975 60.000 0.00 0.00 0.00 3.86
1471 1585 1.927174 GTAACAGTAGCGTGCAGATGG 59.073 52.381 0.00 0.00 0.00 3.51
1537 1651 3.878160 TCGTGTTGTATACCATGCTCA 57.122 42.857 0.00 0.00 0.00 4.26
1832 1947 0.514691 GTGCCGCTGAGAACAAGAAG 59.485 55.000 0.00 0.00 0.00 2.85
1870 1985 2.437359 GGGCGCATTCTGCACTCT 60.437 61.111 10.83 0.00 45.36 3.24
1968 2083 3.809279 TGTGACATTTATGGAGCTATGCG 59.191 43.478 0.00 0.00 0.00 4.73
1973 2088 3.521126 ACTCCTGTGACATTTATGGAGCT 59.479 43.478 15.32 0.00 43.34 4.09
2008 2123 4.760715 GGAGCAGAACAAGATATGCATCAT 59.239 41.667 0.19 0.00 41.14 2.45
2192 2307 4.165950 GGGATTGGGGGCATAAAAGAAATT 59.834 41.667 0.00 0.00 0.00 1.82
2194 2309 3.111484 GGGATTGGGGGCATAAAAGAAA 58.889 45.455 0.00 0.00 0.00 2.52
2218 2334 2.241259 ACATCGCGCATAACAACAAC 57.759 45.000 8.75 0.00 0.00 3.32
2481 2598 5.333299 TCAGGCGTATTGTAGCTAAAGAA 57.667 39.130 0.00 0.00 0.00 2.52
2498 2615 8.848474 TTAGCTATATAGAAACCAATTCAGGC 57.152 34.615 14.16 0.00 40.72 4.85
2590 2711 9.967346 TGAACAACTGAATAGTATAGCTGATAC 57.033 33.333 0.00 0.90 40.83 2.24
3037 3171 6.452242 TGTTACGGCTGTATCAATATGTAGG 58.548 40.000 13.00 0.00 29.55 3.18
3209 3345 2.803030 AAGCTACCTGACGGAGACTA 57.197 50.000 0.00 0.00 0.00 2.59
3411 3548 2.275134 TTTGCAACCAGCTCATCAGA 57.725 45.000 0.00 0.00 45.94 3.27
3498 3636 5.961395 ACAACGTAGCAAAATATACCTCG 57.039 39.130 0.00 0.00 0.00 4.63
3514 3653 7.534918 GTGTAACAAACAAGTCTAAAACAACGT 59.465 33.333 0.00 0.00 40.63 3.99
3516 3655 8.024865 AGGTGTAACAAACAAGTCTAAAACAAC 58.975 33.333 0.00 0.00 40.63 3.32
3525 3664 4.351192 CTGCAAGGTGTAACAAACAAGTC 58.649 43.478 0.00 0.00 40.63 3.01
3529 3674 2.861462 GCTGCAAGGTGTAACAAACA 57.139 45.000 0.00 0.00 39.98 2.83
3622 3767 5.504665 CGTGGAGCAAAATATGATCACCTTC 60.505 44.000 0.00 0.00 46.39 3.46
3631 3776 4.191544 TCCTCTTCGTGGAGCAAAATATG 58.808 43.478 0.00 0.00 32.43 1.78
3743 3888 2.039216 TGCCGGTCCTAAATTCACTCAA 59.961 45.455 1.90 0.00 0.00 3.02
3873 4039 8.043113 TCAACCATCACCATTATGAGCTATATC 58.957 37.037 0.00 0.00 30.46 1.63
3968 4134 5.897377 ATCATAGTTAACAACAACCCTGC 57.103 39.130 8.61 0.00 0.00 4.85
4164 4330 3.087253 CCATACCCTCCACGGCCA 61.087 66.667 2.24 0.00 0.00 5.36
4239 4405 0.683973 CCCTAGTCTGGCTGCCATAG 59.316 60.000 23.64 19.74 30.82 2.23
4343 4509 4.475028 TGTTATTGAAGCTGCAAACGATG 58.525 39.130 12.19 0.00 0.00 3.84
4516 4682 1.856265 GCAGGTAAACTTGCAGCGCT 61.856 55.000 2.64 2.64 46.60 5.92
4727 4893 2.554032 GCACAGGTGAACAGCAAAGTAT 59.446 45.455 3.10 0.00 0.00 2.12
4736 4902 1.902918 GCATGGGCACAGGTGAACA 60.903 57.895 1.13 1.42 40.72 3.18
4842 5113 4.079844 TCAACTAGGCAATCCATCCAATCA 60.080 41.667 0.00 0.00 33.74 2.57
4995 5266 4.022589 AGTTTCACCAATGCAATCAGACTG 60.023 41.667 0.00 0.00 0.00 3.51
4996 5267 4.147321 AGTTTCACCAATGCAATCAGACT 58.853 39.130 0.00 0.00 0.00 3.24
5006 5277 4.851558 GCTACGCTAAAAGTTTCACCAATG 59.148 41.667 0.00 0.00 0.00 2.82
5022 5293 3.045601 ACAGTTTGATTCAGCTACGCT 57.954 42.857 0.00 0.00 40.77 5.07
5154 5426 1.611519 TCACACCCCCGATGAAAAAC 58.388 50.000 0.00 0.00 0.00 2.43
5160 5432 1.694150 AGATACATCACACCCCCGATG 59.306 52.381 0.00 0.00 43.78 3.84
5206 5478 0.886938 TGCCAATCGAACAAAGCGGA 60.887 50.000 0.00 0.00 0.00 5.54
5380 5652 3.801594 CACGCTTTGCTTAAACCAACATT 59.198 39.130 0.00 0.00 0.00 2.71
5675 5947 1.595489 GCACAACAGTTCAGCAGTTCG 60.595 52.381 2.31 0.00 0.00 3.95
5700 5972 1.170919 AGAGCACAAGCAAGGCACAG 61.171 55.000 0.00 0.00 45.49 3.66
5721 5993 3.540617 TGTGCTGTGAGAAAACTTGCTA 58.459 40.909 0.00 0.00 0.00 3.49
5722 5994 2.368439 TGTGCTGTGAGAAAACTTGCT 58.632 42.857 0.00 0.00 0.00 3.91
5726 5998 2.301346 CCCTTGTGCTGTGAGAAAACT 58.699 47.619 0.00 0.00 0.00 2.66
5736 6009 1.001181 CCAAACATTCCCCTTGTGCTG 59.999 52.381 0.00 0.00 0.00 4.41
5741 6014 2.046292 ACCAACCAAACATTCCCCTTG 58.954 47.619 0.00 0.00 0.00 3.61
5817 6090 5.782047 CAAGATGCCACAGATAACCAAAAA 58.218 37.500 0.00 0.00 0.00 1.94
5819 6092 3.193267 GCAAGATGCCACAGATAACCAAA 59.807 43.478 0.00 0.00 37.42 3.28
5833 6106 3.251729 TCTGAGTTGAGTTTGCAAGATGC 59.748 43.478 0.00 0.00 45.29 3.91
5864 6137 1.581447 GCTGGAGGTCGCCAAAAAG 59.419 57.895 0.00 0.00 37.52 2.27
5888 6161 1.543802 CCAACAATCGGCTAGCCAAAA 59.456 47.619 32.47 17.87 35.37 2.44
5889 6162 1.173043 CCAACAATCGGCTAGCCAAA 58.827 50.000 32.47 20.47 35.37 3.28
5890 6163 1.312371 GCCAACAATCGGCTAGCCAA 61.312 55.000 32.47 17.13 46.56 4.52
5891 6164 1.748879 GCCAACAATCGGCTAGCCA 60.749 57.895 32.47 19.90 46.56 4.75
5892 6165 3.111038 GCCAACAATCGGCTAGCC 58.889 61.111 24.75 24.75 46.56 3.93
5898 6171 2.050691 CGAACTTTTGCCAACAATCGG 58.949 47.619 0.00 0.00 35.21 4.18
5899 6172 2.050691 CCGAACTTTTGCCAACAATCG 58.949 47.619 0.00 0.00 35.40 3.34
5900 6173 1.792367 GCCGAACTTTTGCCAACAATC 59.208 47.619 0.00 0.00 35.21 2.67
5901 6174 1.412343 AGCCGAACTTTTGCCAACAAT 59.588 42.857 0.00 0.00 35.21 2.71
5902 6175 0.820871 AGCCGAACTTTTGCCAACAA 59.179 45.000 0.00 0.00 0.00 2.83
5903 6176 0.820871 AAGCCGAACTTTTGCCAACA 59.179 45.000 0.00 0.00 33.71 3.33
5904 6177 1.934589 AAAGCCGAACTTTTGCCAAC 58.065 45.000 0.00 0.00 46.73 3.77
5912 6185 1.963515 AGCCAAATGAAAGCCGAACTT 59.036 42.857 0.00 0.00 41.70 2.66
5914 6187 1.669795 CCAGCCAAATGAAAGCCGAAC 60.670 52.381 0.00 0.00 0.00 3.95
5917 6190 0.318120 AACCAGCCAAATGAAAGCCG 59.682 50.000 0.00 0.00 0.00 5.52
5944 6217 4.321899 GCAAGATCACATAGGCAACCAAAA 60.322 41.667 0.00 0.00 37.17 2.44
5959 6232 7.420002 CAAAATCTTCGGAATATGCAAGATCA 58.580 34.615 0.00 0.00 35.05 2.92
5973 6246 1.885887 TCTGTTGGCCAAAATCTTCGG 59.114 47.619 22.47 11.91 0.00 4.30
5975 6248 2.232208 CCCTCTGTTGGCCAAAATCTTC 59.768 50.000 22.47 7.21 0.00 2.87
5980 6253 0.260230 TGACCCTCTGTTGGCCAAAA 59.740 50.000 22.47 15.30 0.00 2.44
5986 6259 1.542915 CATTGCTTGACCCTCTGTTGG 59.457 52.381 0.00 0.00 0.00 3.77
6027 6300 3.955775 GGCATGTTTGGCTTGTGC 58.044 55.556 0.00 0.00 44.68 4.57
6034 6307 0.318120 AGAAAAGCGGGCATGTTTGG 59.682 50.000 0.00 0.00 0.00 3.28
6035 6308 1.000385 TGAGAAAAGCGGGCATGTTTG 60.000 47.619 0.00 0.00 0.00 2.93
6036 6309 1.327303 TGAGAAAAGCGGGCATGTTT 58.673 45.000 0.00 0.00 0.00 2.83
6037 6310 1.327303 TTGAGAAAAGCGGGCATGTT 58.673 45.000 0.00 0.00 0.00 2.71
6038 6311 1.327303 TTTGAGAAAAGCGGGCATGT 58.673 45.000 0.00 0.00 0.00 3.21
6039 6312 2.437200 TTTTGAGAAAAGCGGGCATG 57.563 45.000 0.00 0.00 0.00 4.06
6040 6313 3.683365 AATTTTGAGAAAAGCGGGCAT 57.317 38.095 0.00 0.00 33.22 4.40
6041 6314 3.129871 CAAATTTTGAGAAAAGCGGGCA 58.870 40.909 2.88 0.00 33.22 5.36
6042 6315 3.130633 ACAAATTTTGAGAAAAGCGGGC 58.869 40.909 15.81 0.00 33.22 6.13
6043 6316 6.423604 ACATAACAAATTTTGAGAAAAGCGGG 59.576 34.615 15.81 0.00 33.22 6.13
6044 6317 7.282916 CACATAACAAATTTTGAGAAAAGCGG 58.717 34.615 15.81 0.00 33.22 5.52
6045 6318 7.042791 ACCACATAACAAATTTTGAGAAAAGCG 60.043 33.333 15.81 0.34 33.22 4.68
6046 6319 8.141835 ACCACATAACAAATTTTGAGAAAAGC 57.858 30.769 15.81 0.00 33.22 3.51
6054 6327 9.357652 CCTGAGAATACCACATAACAAATTTTG 57.642 33.333 7.59 7.59 0.00 2.44
6055 6328 8.531146 CCCTGAGAATACCACATAACAAATTTT 58.469 33.333 0.00 0.00 0.00 1.82
6056 6329 7.363793 GCCCTGAGAATACCACATAACAAATTT 60.364 37.037 0.00 0.00 0.00 1.82
6057 6330 6.096846 GCCCTGAGAATACCACATAACAAATT 59.903 38.462 0.00 0.00 0.00 1.82
6058 6331 5.594317 GCCCTGAGAATACCACATAACAAAT 59.406 40.000 0.00 0.00 0.00 2.32
6059 6332 4.947388 GCCCTGAGAATACCACATAACAAA 59.053 41.667 0.00 0.00 0.00 2.83
6060 6333 4.523083 GCCCTGAGAATACCACATAACAA 58.477 43.478 0.00 0.00 0.00 2.83
6061 6334 3.431626 CGCCCTGAGAATACCACATAACA 60.432 47.826 0.00 0.00 0.00 2.41
6062 6335 3.131396 CGCCCTGAGAATACCACATAAC 58.869 50.000 0.00 0.00 0.00 1.89
6063 6336 2.769663 ACGCCCTGAGAATACCACATAA 59.230 45.455 0.00 0.00 0.00 1.90
6064 6337 2.364324 GACGCCCTGAGAATACCACATA 59.636 50.000 0.00 0.00 0.00 2.29
6065 6338 1.139058 GACGCCCTGAGAATACCACAT 59.861 52.381 0.00 0.00 0.00 3.21
6066 6339 0.535335 GACGCCCTGAGAATACCACA 59.465 55.000 0.00 0.00 0.00 4.17
6067 6340 0.824759 AGACGCCCTGAGAATACCAC 59.175 55.000 0.00 0.00 0.00 4.16
6068 6341 0.824109 CAGACGCCCTGAGAATACCA 59.176 55.000 0.00 0.00 45.78 3.25
6069 6342 1.112113 TCAGACGCCCTGAGAATACC 58.888 55.000 4.23 0.00 46.38 2.73
6077 6350 0.529337 CAGTATGCTCAGACGCCCTG 60.529 60.000 0.00 0.00 44.27 4.45
6078 6351 0.972983 ACAGTATGCTCAGACGCCCT 60.973 55.000 0.00 0.00 42.53 5.19
6079 6352 0.744874 TACAGTATGCTCAGACGCCC 59.255 55.000 0.00 0.00 42.53 6.13
6080 6353 1.405821 AGTACAGTATGCTCAGACGCC 59.594 52.381 0.00 0.00 42.53 5.68
6081 6354 2.853731 AGTACAGTATGCTCAGACGC 57.146 50.000 0.00 0.00 42.53 5.19
6082 6355 5.050227 GGTAGTAGTACAGTATGCTCAGACG 60.050 48.000 9.89 0.00 42.53 4.18
6083 6356 6.056884 AGGTAGTAGTACAGTATGCTCAGAC 58.943 44.000 9.89 0.00 42.53 3.51
6084 6357 6.249911 AGGTAGTAGTACAGTATGCTCAGA 57.750 41.667 9.89 0.00 42.53 3.27
6085 6358 5.470777 GGAGGTAGTAGTACAGTATGCTCAG 59.529 48.000 9.89 0.00 42.53 3.35
6086 6359 5.374921 GGAGGTAGTAGTACAGTATGCTCA 58.625 45.833 9.89 0.00 42.53 4.26
6087 6360 4.451774 CGGAGGTAGTAGTACAGTATGCTC 59.548 50.000 9.89 5.67 42.53 4.26
6088 6361 4.141528 ACGGAGGTAGTAGTACAGTATGCT 60.142 45.833 9.89 0.00 42.53 3.79
6089 6362 4.133078 ACGGAGGTAGTAGTACAGTATGC 58.867 47.826 9.89 0.00 42.53 3.14
6090 6363 5.466058 CAGACGGAGGTAGTAGTACAGTATG 59.534 48.000 9.89 7.35 46.00 2.39
6091 6364 5.454471 CCAGACGGAGGTAGTAGTACAGTAT 60.454 48.000 9.89 0.00 0.00 2.12
6092 6365 4.141846 CCAGACGGAGGTAGTAGTACAGTA 60.142 50.000 9.89 0.00 0.00 2.74
6093 6366 3.370315 CCAGACGGAGGTAGTAGTACAGT 60.370 52.174 9.89 4.05 0.00 3.55
6094 6367 3.118482 TCCAGACGGAGGTAGTAGTACAG 60.118 52.174 9.89 1.13 35.91 2.74
6095 6368 2.840038 TCCAGACGGAGGTAGTAGTACA 59.160 50.000 9.89 0.00 35.91 2.90
6096 6369 3.550437 TCCAGACGGAGGTAGTAGTAC 57.450 52.381 0.00 0.00 35.91 2.73
6097 6370 4.574674 TTTCCAGACGGAGGTAGTAGTA 57.425 45.455 0.00 0.00 44.10 1.82
6098 6371 3.446442 TTTCCAGACGGAGGTAGTAGT 57.554 47.619 0.00 0.00 44.10 2.73
6099 6372 5.131784 AGTATTTCCAGACGGAGGTAGTAG 58.868 45.833 0.00 0.00 44.10 2.57
6100 6373 5.121380 AGTATTTCCAGACGGAGGTAGTA 57.879 43.478 0.00 0.00 44.10 1.82
6101 6374 3.978610 AGTATTTCCAGACGGAGGTAGT 58.021 45.455 0.00 0.00 44.10 2.73
6102 6375 4.159879 ACAAGTATTTCCAGACGGAGGTAG 59.840 45.833 0.00 0.00 44.10 3.18
6103 6376 4.091549 ACAAGTATTTCCAGACGGAGGTA 58.908 43.478 0.00 0.00 44.10 3.08
6104 6377 2.904434 ACAAGTATTTCCAGACGGAGGT 59.096 45.455 0.00 0.00 44.10 3.85
6105 6378 3.056107 TGACAAGTATTTCCAGACGGAGG 60.056 47.826 0.00 0.00 44.10 4.30
6106 6379 4.188247 TGACAAGTATTTCCAGACGGAG 57.812 45.455 0.00 0.00 44.10 4.63
6107 6380 4.221924 TGATGACAAGTATTTCCAGACGGA 59.778 41.667 0.00 0.00 40.60 4.69
6108 6381 4.503910 TGATGACAAGTATTTCCAGACGG 58.496 43.478 0.00 0.00 0.00 4.79
6109 6382 6.480524 TTTGATGACAAGTATTTCCAGACG 57.519 37.500 0.00 0.00 37.32 4.18
6110 6383 7.308435 CCTTTTGATGACAAGTATTTCCAGAC 58.692 38.462 0.00 0.00 37.32 3.51
6111 6384 6.434028 CCCTTTTGATGACAAGTATTTCCAGA 59.566 38.462 0.00 0.00 37.32 3.86
6112 6385 6.434028 TCCCTTTTGATGACAAGTATTTCCAG 59.566 38.462 0.00 0.00 37.32 3.86
6113 6386 6.208599 GTCCCTTTTGATGACAAGTATTTCCA 59.791 38.462 0.00 0.00 37.32 3.53
6114 6387 6.208599 TGTCCCTTTTGATGACAAGTATTTCC 59.791 38.462 0.00 0.00 36.16 3.13
6115 6388 7.214467 TGTCCCTTTTGATGACAAGTATTTC 57.786 36.000 0.00 0.00 36.16 2.17
6116 6389 7.595819 TTGTCCCTTTTGATGACAAGTATTT 57.404 32.000 0.00 0.00 42.36 1.40
6117 6390 7.595819 TTTGTCCCTTTTGATGACAAGTATT 57.404 32.000 0.00 0.00 46.27 1.89
6118 6391 7.595819 TTTTGTCCCTTTTGATGACAAGTAT 57.404 32.000 0.00 0.00 46.27 2.12
6119 6392 7.411486 TTTTTGTCCCTTTTGATGACAAGTA 57.589 32.000 0.00 0.00 46.27 2.24
6120 6393 5.930837 TTTTGTCCCTTTTGATGACAAGT 57.069 34.783 0.00 0.00 46.27 3.16
6241 6514 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
6242 6515 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
6244 6517 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
6245 6518 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
6260 6533 8.807118 GGGATGTATCTAGATACTTGTCATCAA 58.193 37.037 32.67 16.69 43.04 2.57
6261 6534 8.173412 AGGGATGTATCTAGATACTTGTCATCA 58.827 37.037 32.67 17.31 43.04 3.07
6262 6535 8.588290 AGGGATGTATCTAGATACTTGTCATC 57.412 38.462 32.67 26.51 43.04 2.92
6263 6536 8.964533 AAGGGATGTATCTAGATACTTGTCAT 57.035 34.615 32.67 22.04 43.04 3.06
6264 6537 8.783660 AAAGGGATGTATCTAGATACTTGTCA 57.216 34.615 32.67 19.06 43.04 3.58
6280 6553 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
6281 6554 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.