Multiple sequence alignment - TraesCS3B01G148500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G148500 chr3B 100.000 4243 0 0 1 4243 139781491 139777249 0.000000e+00 7836.0
1 TraesCS3B01G148500 chr3B 78.813 1095 144 42 2345 3373 139833177 139832105 0.000000e+00 656.0
2 TraesCS3B01G148500 chr3B 77.367 1162 170 62 1101 2220 139834348 139833238 1.690000e-168 603.0
3 TraesCS3B01G148500 chr3B 80.000 130 17 4 388 508 139835113 139834984 2.100000e-13 87.9
4 TraesCS3B01G148500 chr3D 91.419 3997 205 75 314 4243 90375847 90371922 0.000000e+00 5354.0
5 TraesCS3B01G148500 chr3D 78.389 981 121 37 2346 3255 90380436 90379476 1.720000e-153 553.0
6 TraesCS3B01G148500 chr3D 91.667 300 18 4 1 300 90376393 90376101 3.950000e-110 409.0
7 TraesCS3B01G148500 chr3D 75.478 836 115 48 1101 1917 90381585 90380821 4.090000e-85 326.0
8 TraesCS3B01G148500 chr3D 88.479 217 25 0 2004 2220 90380720 90380504 3.250000e-66 263.0
9 TraesCS3B01G148500 chr3D 84.828 145 18 4 3231 3373 90379473 90379331 4.420000e-30 143.0
10 TraesCS3B01G148500 chr3D 80.769 130 16 4 388 508 90382585 90382456 4.520000e-15 93.5
11 TraesCS3B01G148500 chr3A 93.029 1248 65 12 2266 3505 106662058 106660825 0.000000e+00 1803.0
12 TraesCS3B01G148500 chr3A 91.993 1149 64 13 1100 2236 106663192 106662060 0.000000e+00 1587.0
13 TraesCS3B01G148500 chr3A 92.139 865 42 12 3386 4243 106660828 106659983 0.000000e+00 1197.0
14 TraesCS3B01G148500 chr3A 87.808 730 52 19 311 1018 106664007 106663293 0.000000e+00 821.0
15 TraesCS3B01G148500 chr3A 77.215 1106 144 49 2344 3373 106677582 106676509 8.020000e-152 547.0
16 TraesCS3B01G148500 chr3A 77.621 849 106 45 1101 1917 106678781 106677985 5.040000e-119 438.0
17 TraesCS3B01G148500 chr3A 87.611 226 24 2 79 300 106664464 106664239 4.210000e-65 259.0
18 TraesCS3B01G148500 chr3A 87.558 217 27 0 2004 2220 106677883 106677667 7.040000e-63 252.0
19 TraesCS3B01G148500 chr3A 81.648 267 44 5 3110 3373 106674680 106674416 2.570000e-52 217.0
20 TraesCS3B01G148500 chr3A 81.538 130 15 4 388 508 106679495 106679366 9.710000e-17 99.0
21 TraesCS3B01G148500 chr5A 100.000 412 0 0 1756 2167 311157982 311157571 0.000000e+00 761.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G148500 chr3B 139777249 139781491 4242 True 7836.000000 7836 100.000000 1 4243 1 chr3B.!!$R1 4242
1 TraesCS3B01G148500 chr3B 139832105 139835113 3008 True 448.966667 656 78.726667 388 3373 3 chr3B.!!$R2 2985
2 TraesCS3B01G148500 chr3D 90371922 90382585 10663 True 1020.214286 5354 84.432714 1 4243 7 chr3D.!!$R1 4242
3 TraesCS3B01G148500 chr3A 106659983 106664464 4481 True 1133.400000 1803 90.516000 79 4243 5 chr3A.!!$R1 4164
4 TraesCS3B01G148500 chr3A 106674416 106679495 5079 True 310.600000 547 81.116000 388 3373 5 chr3A.!!$R2 2985

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 7084 0.027979 CATGCTGGAAATGGCGTACG 59.972 55.0 11.84 11.84 0.00 3.67 F
933 7417 0.245539 GGTGCTTGCGACCTACTGTA 59.754 55.0 0.00 0.00 0.00 2.74 F
2775 9449 0.318107 GATGGTTGCATGCATACGCC 60.318 55.0 23.37 20.18 37.32 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 8002 1.152546 GGGTCCCTGCAACTTGGTT 60.153 57.895 0.00 0.00 0.00 3.67 R
2896 9592 0.623723 GGGGGCAATAGAACTGGTCA 59.376 55.000 0.00 0.00 0.00 4.02 R
3820 12763 0.249741 AACCAAACCGAGTCTGGTCG 60.250 55.000 2.49 0.94 42.72 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.713902 AATCACGCCCCATCTCATC 57.286 52.632 0.00 0.00 0.00 2.92
19 20 1.135094 AATCACGCCCCATCTCATCT 58.865 50.000 0.00 0.00 0.00 2.90
21 22 0.977627 TCACGCCCCATCTCATCTGT 60.978 55.000 0.00 0.00 0.00 3.41
23 24 0.689080 ACGCCCCATCTCATCTGTCT 60.689 55.000 0.00 0.00 0.00 3.41
24 25 0.033228 CGCCCCATCTCATCTGTCTC 59.967 60.000 0.00 0.00 0.00 3.36
25 26 1.422531 GCCCCATCTCATCTGTCTCT 58.577 55.000 0.00 0.00 0.00 3.10
26 27 1.767681 GCCCCATCTCATCTGTCTCTT 59.232 52.381 0.00 0.00 0.00 2.85
28 29 3.244044 GCCCCATCTCATCTGTCTCTTAC 60.244 52.174 0.00 0.00 0.00 2.34
29 30 3.963374 CCCCATCTCATCTGTCTCTTACA 59.037 47.826 0.00 0.00 36.42 2.41
31 32 4.648762 CCCATCTCATCTGTCTCTTACACT 59.351 45.833 0.00 0.00 33.45 3.55
32 33 5.830457 CCCATCTCATCTGTCTCTTACACTA 59.170 44.000 0.00 0.00 33.45 2.74
33 34 6.322456 CCCATCTCATCTGTCTCTTACACTAA 59.678 42.308 0.00 0.00 33.45 2.24
35 36 6.424176 TCTCATCTGTCTCTTACACTAACG 57.576 41.667 0.00 0.00 33.45 3.18
37 38 6.653740 TCTCATCTGTCTCTTACACTAACGAA 59.346 38.462 0.00 0.00 33.45 3.85
38 39 7.337184 TCTCATCTGTCTCTTACACTAACGAAT 59.663 37.037 0.00 0.00 33.45 3.34
39 40 7.251281 TCATCTGTCTCTTACACTAACGAATG 58.749 38.462 0.00 0.00 33.45 2.67
40 41 6.812879 TCTGTCTCTTACACTAACGAATGA 57.187 37.500 0.00 0.00 33.45 2.57
41 42 6.609533 TCTGTCTCTTACACTAACGAATGAC 58.390 40.000 0.00 0.00 33.45 3.06
42 43 5.388111 TGTCTCTTACACTAACGAATGACG 58.612 41.667 0.00 0.00 39.68 4.35
43 44 5.049198 TGTCTCTTACACTAACGAATGACGT 60.049 40.000 0.00 0.00 45.10 4.34
44 45 7.054108 TGTCTCTTACACTAACGAATGACGTG 61.054 42.308 0.00 0.00 43.50 4.49
45 46 9.834133 TGTCTCTTACACTAACGAATGACGTGG 62.834 44.444 0.00 0.00 43.50 4.94
52 53 2.624169 CGAATGACGTGGGTTTGGT 58.376 52.632 0.00 0.00 37.22 3.67
53 54 0.948678 CGAATGACGTGGGTTTGGTT 59.051 50.000 0.00 0.00 37.22 3.67
54 55 1.334599 CGAATGACGTGGGTTTGGTTG 60.335 52.381 0.00 0.00 37.22 3.77
55 56 1.950909 GAATGACGTGGGTTTGGTTGA 59.049 47.619 0.00 0.00 0.00 3.18
56 57 1.314730 ATGACGTGGGTTTGGTTGAC 58.685 50.000 0.00 0.00 0.00 3.18
57 58 0.035343 TGACGTGGGTTTGGTTGACA 60.035 50.000 0.00 0.00 0.00 3.58
58 59 1.314730 GACGTGGGTTTGGTTGACAT 58.685 50.000 0.00 0.00 0.00 3.06
59 60 1.679153 GACGTGGGTTTGGTTGACATT 59.321 47.619 0.00 0.00 0.00 2.71
61 62 1.953686 CGTGGGTTTGGTTGACATTCT 59.046 47.619 0.00 0.00 0.00 2.40
62 63 3.142951 CGTGGGTTTGGTTGACATTCTA 58.857 45.455 0.00 0.00 0.00 2.10
65 66 2.486592 GGGTTTGGTTGACATTCTACGG 59.513 50.000 0.00 0.00 0.00 4.02
66 67 2.486592 GGTTTGGTTGACATTCTACGGG 59.513 50.000 0.00 0.00 0.00 5.28
67 68 2.483014 TTGGTTGACATTCTACGGGG 57.517 50.000 0.00 0.00 0.00 5.73
68 69 0.616371 TGGTTGACATTCTACGGGGG 59.384 55.000 0.00 0.00 0.00 5.40
70 71 0.035820 GTTGACATTCTACGGGGGCA 60.036 55.000 0.00 0.00 0.00 5.36
71 72 0.251916 TTGACATTCTACGGGGGCAG 59.748 55.000 0.00 0.00 0.00 4.85
72 73 1.523938 GACATTCTACGGGGGCAGC 60.524 63.158 0.00 0.00 0.00 5.25
73 74 1.972660 GACATTCTACGGGGGCAGCT 61.973 60.000 0.00 0.00 0.00 4.24
74 75 1.224592 CATTCTACGGGGGCAGCTT 59.775 57.895 0.00 0.00 0.00 3.74
75 76 0.815615 CATTCTACGGGGGCAGCTTC 60.816 60.000 0.00 0.00 0.00 3.86
77 78 3.458163 CTACGGGGGCAGCTTCGA 61.458 66.667 8.97 0.00 0.00 3.71
109 110 1.342374 GGGTCTCCCTGGATTTGCAAT 60.342 52.381 0.00 0.00 41.34 3.56
110 111 2.027385 GGTCTCCCTGGATTTGCAATC 58.973 52.381 0.00 0.00 0.00 2.67
111 112 1.672881 GTCTCCCTGGATTTGCAATCG 59.327 52.381 0.00 0.00 0.00 3.34
114 115 2.292569 CTCCCTGGATTTGCAATCGATG 59.707 50.000 0.00 0.00 0.00 3.84
124 125 3.153364 CAATCGATGCAATGTCGGC 57.847 52.632 8.24 0.00 39.45 5.54
125 126 0.655337 CAATCGATGCAATGTCGGCG 60.655 55.000 0.00 0.00 39.45 6.46
126 127 2.378945 AATCGATGCAATGTCGGCGC 62.379 55.000 0.00 0.00 39.45 6.53
127 128 3.863543 CGATGCAATGTCGGCGCA 61.864 61.111 10.83 3.90 40.50 6.09
128 129 2.277501 GATGCAATGTCGGCGCAC 60.278 61.111 10.83 0.00 38.73 5.34
129 130 4.164664 ATGCAATGTCGGCGCACG 62.165 61.111 10.83 11.16 46.11 5.34
140 141 2.026879 GCGCACGCCTTTGGAAAA 59.973 55.556 0.30 0.00 34.56 2.29
141 142 2.016165 GCGCACGCCTTTGGAAAAG 61.016 57.895 0.30 0.00 34.56 2.27
145 146 2.061028 GCACGCCTTTGGAAAAGAATG 58.939 47.619 1.31 0.00 0.00 2.67
146 147 2.676076 CACGCCTTTGGAAAAGAATGG 58.324 47.619 1.31 0.00 0.00 3.16
148 149 2.962421 ACGCCTTTGGAAAAGAATGGAA 59.038 40.909 1.31 0.00 0.00 3.53
149 150 3.005791 ACGCCTTTGGAAAAGAATGGAAG 59.994 43.478 1.31 0.00 0.00 3.46
150 151 3.005791 CGCCTTTGGAAAAGAATGGAAGT 59.994 43.478 1.31 0.00 0.00 3.01
151 152 4.560128 GCCTTTGGAAAAGAATGGAAGTC 58.440 43.478 1.31 0.00 0.00 3.01
161 162 4.576330 AGAATGGAAGTCTTCCCGATTT 57.424 40.909 25.78 15.07 38.70 2.17
163 164 4.868300 AGAATGGAAGTCTTCCCGATTTGG 60.868 45.833 25.78 0.00 38.70 3.28
164 165 2.781681 GGAAGTCTTCCCGATTTGGA 57.218 50.000 19.59 0.00 44.30 3.53
165 166 2.633488 GGAAGTCTTCCCGATTTGGAG 58.367 52.381 19.59 0.00 44.30 3.86
167 168 3.197116 GGAAGTCTTCCCGATTTGGAGTA 59.803 47.826 19.59 0.00 44.30 2.59
168 169 4.434520 GAAGTCTTCCCGATTTGGAGTAG 58.565 47.826 0.64 0.00 42.00 2.57
169 170 2.766828 AGTCTTCCCGATTTGGAGTAGG 59.233 50.000 0.00 0.00 42.00 3.18
170 171 1.485066 TCTTCCCGATTTGGAGTAGGC 59.515 52.381 0.00 0.00 42.00 3.93
171 172 1.486726 CTTCCCGATTTGGAGTAGGCT 59.513 52.381 0.00 0.00 42.00 4.58
172 173 1.580059 TCCCGATTTGGAGTAGGCTT 58.420 50.000 0.00 0.00 42.00 4.35
173 174 1.913419 TCCCGATTTGGAGTAGGCTTT 59.087 47.619 0.00 0.00 42.00 3.51
176 177 2.355716 CCGATTTGGAGTAGGCTTTGGA 60.356 50.000 0.00 0.00 42.00 3.53
178 179 3.947834 CGATTTGGAGTAGGCTTTGGAAT 59.052 43.478 0.00 0.00 0.00 3.01
181 182 4.919774 TTGGAGTAGGCTTTGGAATACA 57.080 40.909 0.00 0.00 0.00 2.29
182 183 4.216411 TGGAGTAGGCTTTGGAATACAC 57.784 45.455 0.00 0.00 0.00 2.90
183 184 3.195661 GGAGTAGGCTTTGGAATACACG 58.804 50.000 0.00 0.00 0.00 4.49
184 185 3.118884 GGAGTAGGCTTTGGAATACACGA 60.119 47.826 0.00 0.00 0.00 4.35
185 186 3.858247 AGTAGGCTTTGGAATACACGAC 58.142 45.455 0.00 0.00 0.00 4.34
186 187 1.722011 AGGCTTTGGAATACACGACG 58.278 50.000 0.00 0.00 0.00 5.12
188 189 0.725117 GCTTTGGAATACACGACGGG 59.275 55.000 0.00 0.00 0.00 5.28
199 200 3.554692 CGACGGGTGAGCGATTGC 61.555 66.667 0.00 0.00 43.24 3.56
217 218 3.768632 GCACGACGAGCGAGAAAT 58.231 55.556 0.00 0.00 44.57 2.17
218 219 2.070861 GCACGACGAGCGAGAAATT 58.929 52.632 0.00 0.00 44.57 1.82
219 220 0.438830 GCACGACGAGCGAGAAATTT 59.561 50.000 0.00 0.00 44.57 1.82
220 221 1.525185 GCACGACGAGCGAGAAATTTC 60.525 52.381 10.33 10.33 44.57 2.17
221 222 1.719246 CACGACGAGCGAGAAATTTCA 59.281 47.619 19.99 0.00 44.57 2.69
222 223 2.345641 CACGACGAGCGAGAAATTTCAT 59.654 45.455 19.99 5.50 44.57 2.57
223 224 3.546271 CACGACGAGCGAGAAATTTCATA 59.454 43.478 19.99 0.00 44.57 2.15
224 225 3.791887 ACGACGAGCGAGAAATTTCATAG 59.208 43.478 19.99 11.20 44.57 2.23
225 226 3.180584 CGACGAGCGAGAAATTTCATAGG 59.819 47.826 19.99 7.11 44.57 2.57
226 227 4.360563 GACGAGCGAGAAATTTCATAGGA 58.639 43.478 19.99 0.00 0.00 2.94
228 229 4.985409 ACGAGCGAGAAATTTCATAGGATC 59.015 41.667 19.99 11.97 0.00 3.36
229 230 4.984785 CGAGCGAGAAATTTCATAGGATCA 59.015 41.667 19.99 0.00 0.00 2.92
230 231 5.463392 CGAGCGAGAAATTTCATAGGATCAA 59.537 40.000 19.99 0.00 0.00 2.57
232 233 7.465916 CGAGCGAGAAATTTCATAGGATCAAAA 60.466 37.037 19.99 0.00 0.00 2.44
234 235 7.970614 AGCGAGAAATTTCATAGGATCAAAAAC 59.029 33.333 19.99 0.00 0.00 2.43
235 236 7.970614 GCGAGAAATTTCATAGGATCAAAAACT 59.029 33.333 19.99 0.00 0.00 2.66
236 237 9.282247 CGAGAAATTTCATAGGATCAAAAACTG 57.718 33.333 19.99 0.00 0.00 3.16
237 238 9.578439 GAGAAATTTCATAGGATCAAAAACTGG 57.422 33.333 19.99 0.00 0.00 4.00
241 242 5.441718 TCATAGGATCAAAAACTGGCTCT 57.558 39.130 0.00 0.00 0.00 4.09
242 243 5.431765 TCATAGGATCAAAAACTGGCTCTC 58.568 41.667 0.00 0.00 0.00 3.20
243 244 3.795688 AGGATCAAAAACTGGCTCTCA 57.204 42.857 0.00 0.00 0.00 3.27
244 245 3.416156 AGGATCAAAAACTGGCTCTCAC 58.584 45.455 0.00 0.00 0.00 3.51
245 246 3.149196 GGATCAAAAACTGGCTCTCACA 58.851 45.455 0.00 0.00 0.00 3.58
246 247 3.057946 GGATCAAAAACTGGCTCTCACAC 60.058 47.826 0.00 0.00 0.00 3.82
247 248 2.997980 TCAAAAACTGGCTCTCACACA 58.002 42.857 0.00 0.00 0.00 3.72
248 249 2.682856 TCAAAAACTGGCTCTCACACAC 59.317 45.455 0.00 0.00 0.00 3.82
249 250 2.418368 AAAACTGGCTCTCACACACA 57.582 45.000 0.00 0.00 0.00 3.72
250 251 2.418368 AAACTGGCTCTCACACACAA 57.582 45.000 0.00 0.00 0.00 3.33
251 252 2.418368 AACTGGCTCTCACACACAAA 57.582 45.000 0.00 0.00 0.00 2.83
252 253 2.418368 ACTGGCTCTCACACACAAAA 57.582 45.000 0.00 0.00 0.00 2.44
253 254 2.722094 ACTGGCTCTCACACACAAAAA 58.278 42.857 0.00 0.00 0.00 1.94
254 255 2.423538 ACTGGCTCTCACACACAAAAAC 59.576 45.455 0.00 0.00 0.00 2.43
255 256 2.423185 CTGGCTCTCACACACAAAAACA 59.577 45.455 0.00 0.00 0.00 2.83
256 257 2.163412 TGGCTCTCACACACAAAAACAC 59.837 45.455 0.00 0.00 0.00 3.32
257 258 2.163412 GGCTCTCACACACAAAAACACA 59.837 45.455 0.00 0.00 0.00 3.72
258 259 3.171277 GCTCTCACACACAAAAACACAC 58.829 45.455 0.00 0.00 0.00 3.82
259 260 3.365868 GCTCTCACACACAAAAACACACA 60.366 43.478 0.00 0.00 0.00 3.72
260 261 4.153958 TCTCACACACAAAAACACACAC 57.846 40.909 0.00 0.00 0.00 3.82
261 262 2.908009 CTCACACACAAAAACACACACG 59.092 45.455 0.00 0.00 0.00 4.49
263 264 3.003378 TCACACACAAAAACACACACGAA 59.997 39.130 0.00 0.00 0.00 3.85
265 266 4.207224 CACACACAAAAACACACACGAAAA 59.793 37.500 0.00 0.00 0.00 2.29
266 267 4.442733 ACACACAAAAACACACACGAAAAG 59.557 37.500 0.00 0.00 0.00 2.27
268 269 5.044558 ACACAAAAACACACACGAAAAGTT 58.955 33.333 0.00 0.00 0.00 2.66
269 270 5.051374 ACACAAAAACACACACGAAAAGTTG 60.051 36.000 0.00 0.00 0.00 3.16
270 271 4.084797 ACAAAAACACACACGAAAAGTTGC 60.085 37.500 0.00 0.00 0.00 4.17
271 272 2.271821 AACACACACGAAAAGTTGCC 57.728 45.000 0.00 0.00 0.00 4.52
272 273 0.098025 ACACACACGAAAAGTTGCCG 59.902 50.000 0.00 0.00 0.00 5.69
273 274 0.591236 CACACACGAAAAGTTGCCGG 60.591 55.000 0.00 0.00 0.00 6.13
274 275 1.027792 ACACACGAAAAGTTGCCGGT 61.028 50.000 1.90 0.00 0.00 5.28
276 277 1.083015 CACGAAAAGTTGCCGGTCG 60.083 57.895 1.90 4.90 37.71 4.79
278 279 2.127383 GAAAAGTTGCCGGTCGCG 60.127 61.111 1.90 0.00 42.08 5.87
279 280 3.588891 GAAAAGTTGCCGGTCGCGG 62.589 63.158 6.13 0.00 42.08 6.46
280 281 4.612412 AAAGTTGCCGGTCGCGGA 62.612 61.111 6.13 0.00 42.08 5.54
301 302 3.476295 GCATTCATCTGAAAGCGTGAA 57.524 42.857 4.60 0.00 40.65 3.18
302 303 3.825308 GCATTCATCTGAAAGCGTGAAA 58.175 40.909 4.60 0.00 40.10 2.69
303 304 3.850273 GCATTCATCTGAAAGCGTGAAAG 59.150 43.478 4.60 0.00 40.10 2.62
304 305 4.614535 GCATTCATCTGAAAGCGTGAAAGT 60.615 41.667 4.60 0.00 40.10 2.66
305 306 5.390885 GCATTCATCTGAAAGCGTGAAAGTA 60.391 40.000 4.60 0.00 40.10 2.24
306 307 6.602179 CATTCATCTGAAAGCGTGAAAGTAA 58.398 36.000 0.00 0.00 40.10 2.24
307 308 6.612247 TTCATCTGAAAGCGTGAAAGTAAA 57.388 33.333 0.00 0.00 36.06 2.01
309 310 7.022055 TCATCTGAAAGCGTGAAAGTAAAAA 57.978 32.000 0.00 0.00 0.00 1.94
333 334 4.083537 ACGCGATCTTGTAAAATTTCAGCA 60.084 37.500 15.93 0.00 0.00 4.41
335 336 5.002840 CGCGATCTTGTAAAATTTCAGCAAG 59.997 40.000 0.00 16.60 38.20 4.01
336 337 6.086222 GCGATCTTGTAAAATTTCAGCAAGA 58.914 36.000 22.56 22.56 46.03 3.02
339 340 7.272084 CGATCTTGTAAAATTTCAGCAAGAAGG 59.728 37.037 23.41 17.68 45.41 3.46
340 341 6.215845 TCTTGTAAAATTTCAGCAAGAAGGC 58.784 36.000 20.17 0.00 41.41 4.35
341 342 4.545610 TGTAAAATTTCAGCAAGAAGGCG 58.454 39.130 0.00 0.00 37.57 5.52
342 343 4.277174 TGTAAAATTTCAGCAAGAAGGCGA 59.723 37.500 0.00 0.00 37.57 5.54
343 344 4.525912 AAAATTTCAGCAAGAAGGCGAT 57.474 36.364 0.00 0.00 37.57 4.58
344 345 3.772060 AATTTCAGCAAGAAGGCGATC 57.228 42.857 0.00 0.00 37.57 3.69
345 346 2.479566 TTTCAGCAAGAAGGCGATCT 57.520 45.000 0.00 0.00 37.57 2.75
351 352 2.859992 AAGAAGGCGATCTTGGTGC 58.140 52.632 7.63 0.00 38.22 5.01
352 353 1.021390 AAGAAGGCGATCTTGGTGCG 61.021 55.000 7.63 0.00 38.22 5.34
353 354 1.741770 GAAGGCGATCTTGGTGCGT 60.742 57.895 0.00 0.00 35.50 5.24
354 355 1.970917 GAAGGCGATCTTGGTGCGTG 61.971 60.000 0.00 0.00 35.50 5.34
355 356 2.434185 GGCGATCTTGGTGCGTGA 60.434 61.111 0.00 0.00 0.00 4.35
356 357 1.815421 GGCGATCTTGGTGCGTGAT 60.815 57.895 0.00 0.00 0.00 3.06
357 358 1.638467 GCGATCTTGGTGCGTGATC 59.362 57.895 0.00 0.00 34.81 2.92
359 360 0.926155 CGATCTTGGTGCGTGATCAG 59.074 55.000 0.00 0.00 37.14 2.90
361 362 0.036105 ATCTTGGTGCGTGATCAGCA 60.036 50.000 13.62 13.62 41.99 4.41
370 371 2.558617 GTGATCAGCACACATGGCA 58.441 52.632 0.00 0.00 46.91 4.92
371 372 1.100510 GTGATCAGCACACATGGCAT 58.899 50.000 0.00 0.00 46.91 4.40
372 373 1.475280 GTGATCAGCACACATGGCATT 59.525 47.619 0.00 0.00 46.91 3.56
373 374 2.684374 GTGATCAGCACACATGGCATTA 59.316 45.455 0.00 0.00 46.91 1.90
374 375 2.946990 TGATCAGCACACATGGCATTAG 59.053 45.455 0.00 0.00 0.00 1.73
376 377 2.358957 TCAGCACACATGGCATTAGTC 58.641 47.619 0.00 0.00 0.00 2.59
377 378 1.063027 CAGCACACATGGCATTAGTCG 59.937 52.381 0.00 0.00 0.00 4.18
378 379 0.378257 GCACACATGGCATTAGTCGG 59.622 55.000 0.00 0.00 0.00 4.79
380 381 0.908910 ACACATGGCATTAGTCGGGA 59.091 50.000 0.00 0.00 0.00 5.14
382 383 1.942657 CACATGGCATTAGTCGGGAAG 59.057 52.381 0.00 0.00 0.00 3.46
383 384 1.134098 ACATGGCATTAGTCGGGAAGG 60.134 52.381 0.00 0.00 0.00 3.46
384 385 1.140852 CATGGCATTAGTCGGGAAGGA 59.859 52.381 0.00 0.00 0.00 3.36
385 386 1.281419 TGGCATTAGTCGGGAAGGAA 58.719 50.000 0.00 0.00 0.00 3.36
386 387 1.631388 TGGCATTAGTCGGGAAGGAAA 59.369 47.619 0.00 0.00 0.00 3.13
388 389 3.288092 GGCATTAGTCGGGAAGGAAAAT 58.712 45.455 0.00 0.00 0.00 1.82
389 390 3.315470 GGCATTAGTCGGGAAGGAAAATC 59.685 47.826 0.00 0.00 0.00 2.17
390 391 3.315470 GCATTAGTCGGGAAGGAAAATCC 59.685 47.826 0.00 0.00 36.58 3.01
475 6945 0.659957 GTGCATTTGCTCGATCCCTC 59.340 55.000 3.94 0.00 42.66 4.30
477 6947 0.659957 GCATTTGCTCGATCCCTCAC 59.340 55.000 0.00 0.00 38.21 3.51
480 6950 2.852495 TTTGCTCGATCCCTCACCGC 62.852 60.000 0.00 0.00 0.00 5.68
481 6951 4.593864 GCTCGATCCCTCACCGCC 62.594 72.222 0.00 0.00 0.00 6.13
482 6952 4.271816 CTCGATCCCTCACCGCCG 62.272 72.222 0.00 0.00 0.00 6.46
485 6955 4.467084 GATCCCTCACCGCCGCAA 62.467 66.667 0.00 0.00 0.00 4.85
486 6956 4.778143 ATCCCTCACCGCCGCAAC 62.778 66.667 0.00 0.00 0.00 4.17
490 6960 4.717629 CTCACCGCCGCAACGAGA 62.718 66.667 0.00 0.00 34.06 4.04
491 6961 3.989698 CTCACCGCCGCAACGAGAT 62.990 63.158 0.00 0.00 34.06 2.75
500 6970 1.534175 CCGCAACGAGATCCTCTGTAC 60.534 57.143 0.00 0.00 0.00 2.90
516 6986 4.072131 TCTGTACCTTGTTCTGCAATTCC 58.928 43.478 0.00 0.00 36.36 3.01
551 7021 5.713025 ACTGCACGCTTTTAATCAATCAAT 58.287 33.333 0.00 0.00 0.00 2.57
553 7023 5.707931 TGCACGCTTTTAATCAATCAATCA 58.292 33.333 0.00 0.00 0.00 2.57
554 7024 5.572511 TGCACGCTTTTAATCAATCAATCAC 59.427 36.000 0.00 0.00 0.00 3.06
555 7025 5.275418 GCACGCTTTTAATCAATCAATCACG 60.275 40.000 0.00 0.00 0.00 4.35
577 7054 0.329261 CCATTGCAAGAGGAGGGACA 59.671 55.000 13.96 0.00 0.00 4.02
578 7055 1.064166 CCATTGCAAGAGGAGGGACAT 60.064 52.381 13.96 0.00 0.00 3.06
605 7082 2.700722 TACATGCTGGAAATGGCGTA 57.299 45.000 0.00 0.00 0.00 4.42
606 7083 1.094785 ACATGCTGGAAATGGCGTAC 58.905 50.000 0.00 0.00 0.00 3.67
607 7084 0.027979 CATGCTGGAAATGGCGTACG 59.972 55.000 11.84 11.84 0.00 3.67
608 7085 1.714899 ATGCTGGAAATGGCGTACGC 61.715 55.000 31.54 31.54 41.06 4.42
644 7121 4.612536 GCAAACGCACGCAGCTGT 62.613 61.111 16.64 0.00 42.61 4.40
668 7145 3.374745 GAGATAACCGCATGGCATTTTG 58.625 45.455 0.00 0.00 39.70 2.44
714 7193 0.536460 TCAAACGGGGAAAGGACAGC 60.536 55.000 0.00 0.00 0.00 4.40
746 7229 4.558226 ATCCTGCGCTGATTTGGATATA 57.442 40.909 16.65 0.00 35.95 0.86
799 7282 5.705441 ACAAACGAGAGATTTGGCTTGAATA 59.295 36.000 0.00 0.00 40.64 1.75
803 7287 7.396540 ACGAGAGATTTGGCTTGAATATTTT 57.603 32.000 0.00 0.00 0.00 1.82
817 7301 3.843893 ATATTTTCCCCATTTGCTGCC 57.156 42.857 0.00 0.00 0.00 4.85
838 7322 2.559840 CCTACGCTCGTGTCGTGT 59.440 61.111 14.18 3.63 40.69 4.49
886 7370 9.040939 GTATAAATACATACACATGAGCACACA 57.959 33.333 0.00 0.00 35.96 3.72
887 7371 6.816134 AAATACATACACATGAGCACACAA 57.184 33.333 0.00 0.00 35.96 3.33
930 7414 2.261671 CGGTGCTTGCGACCTACT 59.738 61.111 10.67 0.00 0.00 2.57
931 7415 2.094659 CGGTGCTTGCGACCTACTG 61.095 63.158 10.67 0.00 0.00 2.74
932 7416 1.004918 GGTGCTTGCGACCTACTGT 60.005 57.895 0.00 0.00 0.00 3.55
933 7417 0.245539 GGTGCTTGCGACCTACTGTA 59.754 55.000 0.00 0.00 0.00 2.74
934 7418 1.347320 GTGCTTGCGACCTACTGTAC 58.653 55.000 0.00 0.00 0.00 2.90
938 7422 2.790468 GCTTGCGACCTACTGTACTACG 60.790 54.545 0.00 0.00 0.00 3.51
968 7452 1.449246 CCAGCCAGCTCTTCTTCCG 60.449 63.158 0.00 0.00 0.00 4.30
985 7469 2.806856 CGCCGATTCAGCTGCTGAC 61.807 63.158 30.47 19.21 40.46 3.51
1050 7542 2.030007 TCGGAAGGTACACGTAGGTTTG 60.030 50.000 0.00 0.00 0.00 2.93
1094 7592 2.092753 GGATCTTGAACATGGCAGAGGA 60.093 50.000 0.00 0.00 0.00 3.71
1152 7680 3.390521 AGTTGGATCTGCGGCGGA 61.391 61.111 14.84 14.84 0.00 5.54
1243 7777 5.620205 CGAGACGGATGATTCCAAGGTATAG 60.620 48.000 0.00 0.00 42.74 1.31
1380 7936 0.331616 TCGAGGAGACATGGGACTCA 59.668 55.000 15.08 0.00 37.52 3.41
1392 7948 0.540923 GGGACTCAGCTTGCAGAGAT 59.459 55.000 19.28 6.06 35.83 2.75
1446 8002 1.201429 GGACCTTCCTGCTGGGAGAA 61.201 60.000 19.29 0.86 46.01 2.87
1521 8079 1.422662 TCGACGACGATCAAGACGG 59.577 57.895 5.75 0.00 43.81 4.79
1556 8114 2.100197 CACCCATCTTCGTCTCTGGTA 58.900 52.381 0.00 0.00 0.00 3.25
1576 8135 5.302059 TGGTATCTAGCACAAGAGGTATCAC 59.698 44.000 0.00 0.00 0.00 3.06
1779 8342 1.826720 CAGCAACATACCTGGGCAAAT 59.173 47.619 0.00 0.00 31.44 2.32
1813 8377 5.064452 CGTTCCTTCTTCATTCCATCTTCAG 59.936 44.000 0.00 0.00 0.00 3.02
1953 8523 7.737972 ACTACTAGCTAGTCAGACATATGTG 57.262 40.000 29.28 0.00 37.73 3.21
2269 8874 8.839310 ACTGATAAATAAGATCCAGTACATGC 57.161 34.615 0.00 0.00 0.00 4.06
2272 8877 8.581578 TGATAAATAAGATCCAGTACATGCGTA 58.418 33.333 0.00 0.00 0.00 4.42
2552 9197 5.851720 AGTGAGTAGCATATCACATTGAGG 58.148 41.667 14.95 0.00 46.63 3.86
2565 9211 2.893489 ACATTGAGGAAGGTGGCTTTTC 59.107 45.455 0.00 0.00 0.00 2.29
2659 9312 6.428159 ACACTATCCAACTGCAACTTCTTTAG 59.572 38.462 0.00 0.00 0.00 1.85
2770 9444 2.665649 CAACTGATGGTTGCATGCAT 57.334 45.000 23.37 6.15 46.89 3.96
2771 9445 3.786516 CAACTGATGGTTGCATGCATA 57.213 42.857 23.37 11.70 46.89 3.14
2772 9446 3.441163 CAACTGATGGTTGCATGCATAC 58.559 45.455 23.37 20.50 46.89 2.39
2773 9447 1.672363 ACTGATGGTTGCATGCATACG 59.328 47.619 23.37 11.15 0.00 3.06
2774 9448 0.381445 TGATGGTTGCATGCATACGC 59.619 50.000 23.37 15.13 39.24 4.42
2775 9449 0.318107 GATGGTTGCATGCATACGCC 60.318 55.000 23.37 20.18 37.32 5.68
2776 9450 1.036481 ATGGTTGCATGCATACGCCA 61.036 50.000 23.37 24.63 37.32 5.69
2800 9496 8.215050 CCATGTAGTATGTTCCCCAAACTTATA 58.785 37.037 0.00 0.00 38.76 0.98
2896 9592 5.766670 TGAAGTACGGTATCCTATCGACATT 59.233 40.000 0.00 0.00 35.91 2.71
3103 9828 2.482296 ATCCTGTGCAGCAAAAGCGC 62.482 55.000 0.00 0.00 42.56 5.92
3134 9859 2.292292 CGGGATTTTTCTCCACAACGTT 59.708 45.455 0.00 0.00 37.01 3.99
3195 12000 4.383010 CCAAAATCCTAAATGCCCAAGGAC 60.383 45.833 0.00 0.00 42.08 3.85
3292 12099 2.763448 GCTTGGACATAGACAGAGGAGT 59.237 50.000 0.00 0.00 0.00 3.85
3350 12158 0.462759 GGCAGGGTAGCAGTGCTAAG 60.463 60.000 26.04 16.41 43.07 2.18
3362 12170 4.080356 AGCAGTGCTAAGATTGGATTGGTA 60.080 41.667 18.11 0.00 36.99 3.25
3368 12176 7.716998 AGTGCTAAGATTGGATTGGTAGTAATG 59.283 37.037 0.00 0.00 0.00 1.90
3369 12177 7.715249 GTGCTAAGATTGGATTGGTAGTAATGA 59.285 37.037 0.00 0.00 0.00 2.57
3370 12178 8.439971 TGCTAAGATTGGATTGGTAGTAATGAT 58.560 33.333 0.00 0.00 0.00 2.45
3371 12179 8.725148 GCTAAGATTGGATTGGTAGTAATGATG 58.275 37.037 0.00 0.00 0.00 3.07
3372 12180 9.224267 CTAAGATTGGATTGGTAGTAATGATGG 57.776 37.037 0.00 0.00 0.00 3.51
3373 12181 6.006449 AGATTGGATTGGTAGTAATGATGGC 58.994 40.000 0.00 0.00 0.00 4.40
3412 12222 2.959516 TCTGTCATGCCTACAACTTCG 58.040 47.619 0.00 0.00 0.00 3.79
3420 12232 3.605634 TGCCTACAACTTCGCAATATGT 58.394 40.909 0.00 0.00 0.00 2.29
3517 12454 2.154798 CTGTCTCTGACCGGCCGAAA 62.155 60.000 30.73 10.73 0.00 3.46
3631 12573 3.069872 AGTGGTTCAATTGAAAGCATGCA 59.930 39.130 22.07 0.00 35.58 3.96
3632 12574 3.430895 GTGGTTCAATTGAAAGCATGCAG 59.569 43.478 22.07 0.00 35.58 4.41
3633 12575 3.069872 TGGTTCAATTGAAAGCATGCAGT 59.930 39.130 22.07 6.66 35.58 4.40
3658 12600 4.637977 TGTGTGTGTGAATTGAGCTTACAA 59.362 37.500 0.00 0.00 0.00 2.41
3731 12673 1.224069 CCATTATCCTCAGCACGGCG 61.224 60.000 4.80 4.80 0.00 6.46
3754 12696 5.588958 TCAGACTTGATGTATGACCTGAG 57.411 43.478 0.00 0.00 41.37 3.35
3755 12697 4.403752 TCAGACTTGATGTATGACCTGAGG 59.596 45.833 0.00 0.00 41.37 3.86
3756 12698 3.708631 AGACTTGATGTATGACCTGAGGG 59.291 47.826 2.38 0.00 38.88 4.30
3775 12718 2.029020 GGGGCAAAGAACATTTCTCACC 60.029 50.000 0.00 0.00 39.61 4.02
3776 12719 2.627699 GGGCAAAGAACATTTCTCACCA 59.372 45.455 0.00 0.00 39.61 4.17
3777 12720 3.552890 GGGCAAAGAACATTTCTCACCAC 60.553 47.826 0.00 0.00 39.61 4.16
3778 12721 3.068024 GGCAAAGAACATTTCTCACCACA 59.932 43.478 0.00 0.00 39.61 4.17
3779 12722 4.044426 GCAAAGAACATTTCTCACCACAC 58.956 43.478 0.00 0.00 39.61 3.82
3780 12723 4.202050 GCAAAGAACATTTCTCACCACACT 60.202 41.667 0.00 0.00 39.61 3.55
3782 12725 5.505173 AAGAACATTTCTCACCACACTTG 57.495 39.130 0.00 0.00 39.61 3.16
3783 12726 3.885297 AGAACATTTCTCACCACACTTGG 59.115 43.478 0.00 0.00 42.03 3.61
3798 12741 1.721664 CTTGGCCATGGCTGATGTCG 61.722 60.000 34.70 13.34 41.60 4.35
3801 12744 1.512996 GGCCATGGCTGATGTCGATG 61.513 60.000 34.70 0.00 41.60 3.84
3820 12763 1.304509 GGACAAAGGCAGAGCAGCTC 61.305 60.000 15.25 15.25 34.17 4.09
3823 12766 1.375268 AAAGGCAGAGCAGCTCGAC 60.375 57.895 16.99 13.67 35.36 4.20
3824 12767 2.794820 AAAGGCAGAGCAGCTCGACC 62.795 60.000 22.81 22.81 35.36 4.79
3825 12768 4.074526 GGCAGAGCAGCTCGACCA 62.075 66.667 24.47 0.00 35.36 4.02
3828 12771 1.153862 CAGAGCAGCTCGACCAGAC 60.154 63.158 16.99 0.00 35.36 3.51
3829 12772 1.304052 AGAGCAGCTCGACCAGACT 60.304 57.895 16.99 0.00 35.36 3.24
3830 12773 1.138671 GAGCAGCTCGACCAGACTC 59.861 63.158 6.67 0.00 0.00 3.36
3831 12774 2.202544 GCAGCTCGACCAGACTCG 60.203 66.667 0.00 0.00 34.83 4.18
3832 12775 2.487428 CAGCTCGACCAGACTCGG 59.513 66.667 0.00 0.00 34.27 4.63
3833 12776 2.034376 AGCTCGACCAGACTCGGT 59.966 61.111 0.00 0.00 43.91 4.69
3834 12777 1.604023 AGCTCGACCAGACTCGGTT 60.604 57.895 0.00 0.00 40.22 4.44
4060 13003 1.801913 CTGGAAGAACTCGGCGTCG 60.802 63.158 1.15 1.15 34.07 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.395686 CAGATGAGATGGGGCGTGAT 59.604 55.000 0.00 0.00 0.00 3.06
2 3 0.977627 ACAGATGAGATGGGGCGTGA 60.978 55.000 0.00 0.00 0.00 4.35
3 4 0.531532 GACAGATGAGATGGGGCGTG 60.532 60.000 0.00 0.00 0.00 5.34
4 5 0.689080 AGACAGATGAGATGGGGCGT 60.689 55.000 0.00 0.00 0.00 5.68
5 6 0.033228 GAGACAGATGAGATGGGGCG 59.967 60.000 0.00 0.00 0.00 6.13
8 9 4.648762 AGTGTAAGAGACAGATGAGATGGG 59.351 45.833 0.00 0.00 39.29 4.00
9 10 5.850557 AGTGTAAGAGACAGATGAGATGG 57.149 43.478 0.00 0.00 39.29 3.51
11 12 6.824196 TCGTTAGTGTAAGAGACAGATGAGAT 59.176 38.462 0.00 0.00 39.29 2.75
12 13 6.171213 TCGTTAGTGTAAGAGACAGATGAGA 58.829 40.000 0.00 0.00 39.29 3.27
13 14 6.424176 TCGTTAGTGTAAGAGACAGATGAG 57.576 41.667 0.00 0.00 39.29 2.90
14 15 6.812879 TTCGTTAGTGTAAGAGACAGATGA 57.187 37.500 0.00 0.00 39.29 2.92
16 17 7.251994 GTCATTCGTTAGTGTAAGAGACAGAT 58.748 38.462 0.00 0.00 39.29 2.90
17 18 6.609533 GTCATTCGTTAGTGTAAGAGACAGA 58.390 40.000 0.00 0.00 39.29 3.41
18 19 5.508573 CGTCATTCGTTAGTGTAAGAGACAG 59.491 44.000 0.00 0.00 35.03 3.51
19 20 5.388111 CGTCATTCGTTAGTGTAAGAGACA 58.612 41.667 0.00 0.00 33.09 3.41
35 36 1.950909 TCAACCAAACCCACGTCATTC 59.049 47.619 0.00 0.00 0.00 2.67
37 38 1.314730 GTCAACCAAACCCACGTCAT 58.685 50.000 0.00 0.00 0.00 3.06
38 39 0.035343 TGTCAACCAAACCCACGTCA 60.035 50.000 0.00 0.00 0.00 4.35
39 40 1.314730 ATGTCAACCAAACCCACGTC 58.685 50.000 0.00 0.00 0.00 4.34
40 41 1.679153 GAATGTCAACCAAACCCACGT 59.321 47.619 0.00 0.00 0.00 4.49
41 42 1.953686 AGAATGTCAACCAAACCCACG 59.046 47.619 0.00 0.00 0.00 4.94
42 43 3.058501 CGTAGAATGTCAACCAAACCCAC 60.059 47.826 0.00 0.00 0.00 4.61
43 44 3.142951 CGTAGAATGTCAACCAAACCCA 58.857 45.455 0.00 0.00 0.00 4.51
44 45 2.486592 CCGTAGAATGTCAACCAAACCC 59.513 50.000 0.00 0.00 0.00 4.11
45 46 2.486592 CCCGTAGAATGTCAACCAAACC 59.513 50.000 0.00 0.00 0.00 3.27
46 47 2.486592 CCCCGTAGAATGTCAACCAAAC 59.513 50.000 0.00 0.00 0.00 2.93
47 48 2.553466 CCCCCGTAGAATGTCAACCAAA 60.553 50.000 0.00 0.00 0.00 3.28
48 49 1.003812 CCCCCGTAGAATGTCAACCAA 59.996 52.381 0.00 0.00 0.00 3.67
49 50 0.616371 CCCCCGTAGAATGTCAACCA 59.384 55.000 0.00 0.00 0.00 3.67
50 51 0.746923 GCCCCCGTAGAATGTCAACC 60.747 60.000 0.00 0.00 0.00 3.77
52 53 0.251916 CTGCCCCCGTAGAATGTCAA 59.748 55.000 0.00 0.00 0.00 3.18
53 54 1.904771 CTGCCCCCGTAGAATGTCA 59.095 57.895 0.00 0.00 0.00 3.58
54 55 1.523938 GCTGCCCCCGTAGAATGTC 60.524 63.158 0.00 0.00 0.00 3.06
55 56 1.562672 AAGCTGCCCCCGTAGAATGT 61.563 55.000 0.00 0.00 0.00 2.71
56 57 0.815615 GAAGCTGCCCCCGTAGAATG 60.816 60.000 0.00 0.00 0.00 2.67
57 58 1.527370 GAAGCTGCCCCCGTAGAAT 59.473 57.895 0.00 0.00 0.00 2.40
58 59 2.987125 GAAGCTGCCCCCGTAGAA 59.013 61.111 0.00 0.00 0.00 2.10
59 60 3.458163 CGAAGCTGCCCCCGTAGA 61.458 66.667 0.00 0.00 0.00 2.59
61 62 2.762459 ATCGAAGCTGCCCCCGTA 60.762 61.111 0.00 0.00 0.00 4.02
62 63 4.473520 CATCGAAGCTGCCCCCGT 62.474 66.667 0.00 0.00 0.00 5.28
65 66 1.522580 GTCTCATCGAAGCTGCCCC 60.523 63.158 0.00 0.00 0.00 5.80
66 67 1.880340 CGTCTCATCGAAGCTGCCC 60.880 63.158 0.00 0.00 0.00 5.36
67 68 0.737715 AACGTCTCATCGAAGCTGCC 60.738 55.000 0.00 0.00 34.70 4.85
68 69 0.368227 CAACGTCTCATCGAAGCTGC 59.632 55.000 0.00 0.00 34.70 5.25
70 71 1.073216 CGCAACGTCTCATCGAAGCT 61.073 55.000 0.00 0.00 34.36 3.74
71 72 1.341802 CGCAACGTCTCATCGAAGC 59.658 57.895 0.00 0.00 34.70 3.86
72 73 1.413767 CCCGCAACGTCTCATCGAAG 61.414 60.000 0.00 0.00 34.70 3.79
73 74 1.445410 CCCGCAACGTCTCATCGAA 60.445 57.895 0.00 0.00 34.70 3.71
74 75 2.180769 CCCGCAACGTCTCATCGA 59.819 61.111 0.00 0.00 34.70 3.59
75 76 2.126071 ACCCGCAACGTCTCATCG 60.126 61.111 0.00 0.00 0.00 3.84
77 78 3.377656 AGACCCGCAACGTCTCAT 58.622 55.556 0.00 0.00 35.68 2.90
109 110 3.563088 GCGCCGACATTGCATCGA 61.563 61.111 9.69 0.00 42.25 3.59
110 111 3.863543 TGCGCCGACATTGCATCG 61.864 61.111 4.18 1.17 39.33 3.84
111 112 2.277501 GTGCGCCGACATTGCATC 60.278 61.111 4.18 0.00 41.23 3.91
123 124 2.016165 CTTTTCCAAAGGCGTGCGC 61.016 57.895 8.17 8.17 41.06 6.09
124 125 0.030101 TTCTTTTCCAAAGGCGTGCG 59.970 50.000 0.00 0.00 0.00 5.34
125 126 2.061028 CATTCTTTTCCAAAGGCGTGC 58.939 47.619 0.00 0.00 0.00 5.34
126 127 2.295909 TCCATTCTTTTCCAAAGGCGTG 59.704 45.455 0.00 0.00 0.00 5.34
127 128 2.593026 TCCATTCTTTTCCAAAGGCGT 58.407 42.857 0.00 0.00 0.00 5.68
128 129 3.005791 ACTTCCATTCTTTTCCAAAGGCG 59.994 43.478 0.00 0.00 0.00 5.52
129 130 4.281941 AGACTTCCATTCTTTTCCAAAGGC 59.718 41.667 0.00 0.00 0.00 4.35
146 147 3.336138 ACTCCAAATCGGGAAGACTTC 57.664 47.619 6.66 6.66 36.27 3.01
148 149 2.766828 CCTACTCCAAATCGGGAAGACT 59.233 50.000 0.00 0.00 36.27 3.24
149 150 2.742204 GCCTACTCCAAATCGGGAAGAC 60.742 54.545 0.00 0.00 36.27 3.01
150 151 1.485066 GCCTACTCCAAATCGGGAAGA 59.515 52.381 0.00 0.00 36.27 2.87
151 152 1.486726 AGCCTACTCCAAATCGGGAAG 59.513 52.381 0.00 0.00 36.27 3.46
152 153 1.580059 AGCCTACTCCAAATCGGGAA 58.420 50.000 0.00 0.00 36.27 3.97
154 155 2.017049 CAAAGCCTACTCCAAATCGGG 58.983 52.381 0.00 0.00 34.36 5.14
155 156 2.017049 CCAAAGCCTACTCCAAATCGG 58.983 52.381 0.00 0.00 0.00 4.18
156 157 2.985896 TCCAAAGCCTACTCCAAATCG 58.014 47.619 0.00 0.00 0.00 3.34
157 158 5.885912 TGTATTCCAAAGCCTACTCCAAATC 59.114 40.000 0.00 0.00 0.00 2.17
158 159 5.652452 GTGTATTCCAAAGCCTACTCCAAAT 59.348 40.000 0.00 0.00 0.00 2.32
159 160 5.007682 GTGTATTCCAAAGCCTACTCCAAA 58.992 41.667 0.00 0.00 0.00 3.28
160 161 4.585879 GTGTATTCCAAAGCCTACTCCAA 58.414 43.478 0.00 0.00 0.00 3.53
161 162 3.369052 CGTGTATTCCAAAGCCTACTCCA 60.369 47.826 0.00 0.00 0.00 3.86
163 164 3.864003 GTCGTGTATTCCAAAGCCTACTC 59.136 47.826 0.00 0.00 0.00 2.59
164 165 3.675228 CGTCGTGTATTCCAAAGCCTACT 60.675 47.826 0.00 0.00 0.00 2.57
165 166 2.601763 CGTCGTGTATTCCAAAGCCTAC 59.398 50.000 0.00 0.00 0.00 3.18
167 168 1.674817 CCGTCGTGTATTCCAAAGCCT 60.675 52.381 0.00 0.00 0.00 4.58
168 169 0.725117 CCGTCGTGTATTCCAAAGCC 59.275 55.000 0.00 0.00 0.00 4.35
169 170 0.725117 CCCGTCGTGTATTCCAAAGC 59.275 55.000 0.00 0.00 0.00 3.51
170 171 1.730064 CACCCGTCGTGTATTCCAAAG 59.270 52.381 0.00 0.00 37.73 2.77
171 172 1.343789 TCACCCGTCGTGTATTCCAAA 59.656 47.619 0.00 0.00 43.51 3.28
172 173 0.967662 TCACCCGTCGTGTATTCCAA 59.032 50.000 0.00 0.00 43.51 3.53
173 174 0.528924 CTCACCCGTCGTGTATTCCA 59.471 55.000 0.00 0.00 43.51 3.53
176 177 1.153901 CGCTCACCCGTCGTGTATT 60.154 57.895 0.00 0.00 43.51 1.89
178 179 1.588824 AATCGCTCACCCGTCGTGTA 61.589 55.000 0.00 0.00 43.51 2.90
181 182 2.126071 CAATCGCTCACCCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
182 183 3.554692 GCAATCGCTCACCCGTCG 61.555 66.667 0.00 0.00 34.30 5.12
183 184 3.554692 CGCAATCGCTCACCCGTC 61.555 66.667 0.00 0.00 35.30 4.79
193 194 4.543736 GCTCGTCGTGCGCAATCG 62.544 66.667 14.00 17.41 41.07 3.34
194 195 4.543736 CGCTCGTCGTGCGCAATC 62.544 66.667 25.91 4.48 46.72 2.67
200 201 0.438830 AAATTTCTCGCTCGTCGTGC 59.561 50.000 9.19 9.19 39.67 5.34
201 202 1.719246 TGAAATTTCTCGCTCGTCGTG 59.281 47.619 18.64 0.00 39.67 4.35
203 204 3.180584 CCTATGAAATTTCTCGCTCGTCG 59.819 47.826 18.64 0.00 40.15 5.12
205 206 4.386867 TCCTATGAAATTTCTCGCTCGT 57.613 40.909 18.64 0.00 0.00 4.18
208 209 7.630242 TTTTGATCCTATGAAATTTCTCGCT 57.370 32.000 18.64 4.47 0.00 4.93
211 212 9.578439 CCAGTTTTTGATCCTATGAAATTTCTC 57.422 33.333 18.64 7.67 0.00 2.87
212 213 8.037166 GCCAGTTTTTGATCCTATGAAATTTCT 58.963 33.333 18.64 7.42 0.00 2.52
214 215 7.910584 AGCCAGTTTTTGATCCTATGAAATTT 58.089 30.769 0.00 0.00 0.00 1.82
216 217 6.894103 AGAGCCAGTTTTTGATCCTATGAAAT 59.106 34.615 0.00 0.00 0.00 2.17
217 218 6.248433 AGAGCCAGTTTTTGATCCTATGAAA 58.752 36.000 0.00 0.00 0.00 2.69
218 219 5.819991 AGAGCCAGTTTTTGATCCTATGAA 58.180 37.500 0.00 0.00 0.00 2.57
219 220 5.045651 TGAGAGCCAGTTTTTGATCCTATGA 60.046 40.000 0.00 0.00 0.00 2.15
220 221 5.065731 GTGAGAGCCAGTTTTTGATCCTATG 59.934 44.000 0.00 0.00 0.00 2.23
221 222 5.189180 GTGAGAGCCAGTTTTTGATCCTAT 58.811 41.667 0.00 0.00 0.00 2.57
222 223 4.041567 TGTGAGAGCCAGTTTTTGATCCTA 59.958 41.667 0.00 0.00 0.00 2.94
223 224 3.181440 TGTGAGAGCCAGTTTTTGATCCT 60.181 43.478 0.00 0.00 0.00 3.24
224 225 3.057946 GTGTGAGAGCCAGTTTTTGATCC 60.058 47.826 0.00 0.00 0.00 3.36
225 226 3.565482 TGTGTGAGAGCCAGTTTTTGATC 59.435 43.478 0.00 0.00 0.00 2.92
226 227 3.316308 GTGTGTGAGAGCCAGTTTTTGAT 59.684 43.478 0.00 0.00 0.00 2.57
228 229 2.423185 TGTGTGTGAGAGCCAGTTTTTG 59.577 45.455 0.00 0.00 0.00 2.44
229 230 2.722094 TGTGTGTGAGAGCCAGTTTTT 58.278 42.857 0.00 0.00 0.00 1.94
230 231 2.418368 TGTGTGTGAGAGCCAGTTTT 57.582 45.000 0.00 0.00 0.00 2.43
232 233 2.418368 TTTGTGTGTGAGAGCCAGTT 57.582 45.000 0.00 0.00 0.00 3.16
234 235 2.423185 TGTTTTTGTGTGTGAGAGCCAG 59.577 45.455 0.00 0.00 0.00 4.85
235 236 2.163412 GTGTTTTTGTGTGTGAGAGCCA 59.837 45.455 0.00 0.00 0.00 4.75
236 237 2.163412 TGTGTTTTTGTGTGTGAGAGCC 59.837 45.455 0.00 0.00 0.00 4.70
237 238 3.171277 GTGTGTTTTTGTGTGTGAGAGC 58.829 45.455 0.00 0.00 0.00 4.09
241 242 2.548480 TCGTGTGTGTTTTTGTGTGTGA 59.452 40.909 0.00 0.00 0.00 3.58
242 243 2.922384 TCGTGTGTGTTTTTGTGTGTG 58.078 42.857 0.00 0.00 0.00 3.82
243 244 3.627732 TTCGTGTGTGTTTTTGTGTGT 57.372 38.095 0.00 0.00 0.00 3.72
244 245 4.442733 ACTTTTCGTGTGTGTTTTTGTGTG 59.557 37.500 0.00 0.00 0.00 3.82
245 246 4.612943 ACTTTTCGTGTGTGTTTTTGTGT 58.387 34.783 0.00 0.00 0.00 3.72
246 247 5.361905 CAACTTTTCGTGTGTGTTTTTGTG 58.638 37.500 0.00 0.00 0.00 3.33
247 248 4.084797 GCAACTTTTCGTGTGTGTTTTTGT 60.085 37.500 0.00 0.00 0.00 2.83
248 249 4.381983 GCAACTTTTCGTGTGTGTTTTTG 58.618 39.130 0.00 0.00 0.00 2.44
249 250 3.430556 GGCAACTTTTCGTGTGTGTTTTT 59.569 39.130 0.00 0.00 0.00 1.94
250 251 2.990514 GGCAACTTTTCGTGTGTGTTTT 59.009 40.909 0.00 0.00 0.00 2.43
251 252 2.601804 GGCAACTTTTCGTGTGTGTTT 58.398 42.857 0.00 0.00 0.00 2.83
252 253 1.466697 CGGCAACTTTTCGTGTGTGTT 60.467 47.619 0.00 0.00 0.00 3.32
253 254 0.098025 CGGCAACTTTTCGTGTGTGT 59.902 50.000 0.00 0.00 0.00 3.72
254 255 0.591236 CCGGCAACTTTTCGTGTGTG 60.591 55.000 0.00 0.00 0.00 3.82
255 256 1.027792 ACCGGCAACTTTTCGTGTGT 61.028 50.000 0.00 0.00 0.00 3.72
256 257 0.316689 GACCGGCAACTTTTCGTGTG 60.317 55.000 0.00 0.00 0.00 3.82
257 258 1.768112 CGACCGGCAACTTTTCGTGT 61.768 55.000 0.00 0.00 0.00 4.49
258 259 1.083015 CGACCGGCAACTTTTCGTG 60.083 57.895 0.00 0.00 0.00 4.35
259 260 2.888998 GCGACCGGCAACTTTTCGT 61.889 57.895 0.00 0.00 42.87 3.85
260 261 2.127383 GCGACCGGCAACTTTTCG 60.127 61.111 0.00 1.95 42.87 3.46
261 262 2.127383 CGCGACCGGCAACTTTTC 60.127 61.111 0.00 0.00 43.84 2.29
271 272 2.586079 ATGAATGCTCCGCGACCG 60.586 61.111 8.23 0.00 0.00 4.79
272 273 1.227380 AGATGAATGCTCCGCGACC 60.227 57.895 8.23 0.00 0.00 4.79
273 274 0.528466 TCAGATGAATGCTCCGCGAC 60.528 55.000 8.23 0.00 0.00 5.19
274 275 0.175531 TTCAGATGAATGCTCCGCGA 59.824 50.000 8.23 0.00 0.00 5.87
276 277 1.268437 GCTTTCAGATGAATGCTCCGC 60.268 52.381 20.25 4.74 45.84 5.54
278 279 2.012673 ACGCTTTCAGATGAATGCTCC 58.987 47.619 23.06 4.18 46.60 4.70
279 280 2.674852 TCACGCTTTCAGATGAATGCTC 59.325 45.455 23.06 4.72 46.60 4.26
280 281 2.703416 TCACGCTTTCAGATGAATGCT 58.297 42.857 23.06 12.53 46.60 3.79
281 282 3.476295 TTCACGCTTTCAGATGAATGC 57.524 42.857 18.51 18.51 45.85 3.56
282 283 5.039480 ACTTTCACGCTTTCAGATGAATG 57.961 39.130 0.00 0.33 33.54 2.67
284 285 6.612247 TTTACTTTCACGCTTTCAGATGAA 57.388 33.333 0.00 0.00 0.00 2.57
285 286 6.612247 TTTTACTTTCACGCTTTCAGATGA 57.388 33.333 0.00 0.00 0.00 2.92
306 307 7.566868 GCTGAAATTTTACAAGATCGCGTTTTT 60.567 33.333 5.77 0.00 0.00 1.94
307 308 6.129194 GCTGAAATTTTACAAGATCGCGTTTT 60.129 34.615 5.77 0.00 0.00 2.43
309 310 4.851558 GCTGAAATTTTACAAGATCGCGTT 59.148 37.500 5.77 0.00 0.00 4.84
310 311 4.083537 TGCTGAAATTTTACAAGATCGCGT 60.084 37.500 5.77 0.00 0.00 6.01
311 312 4.402583 TGCTGAAATTTTACAAGATCGCG 58.597 39.130 0.00 0.00 0.00 5.87
312 313 6.086222 TCTTGCTGAAATTTTACAAGATCGC 58.914 36.000 19.35 4.89 41.20 4.58
314 315 7.062722 GCCTTCTTGCTGAAATTTTACAAGATC 59.937 37.037 21.85 14.67 44.36 2.75
315 316 6.870439 GCCTTCTTGCTGAAATTTTACAAGAT 59.130 34.615 21.85 0.00 44.36 2.40
316 317 6.215845 GCCTTCTTGCTGAAATTTTACAAGA 58.784 36.000 19.35 19.35 43.57 3.02
317 318 5.117592 CGCCTTCTTGCTGAAATTTTACAAG 59.882 40.000 16.58 16.58 39.22 3.16
318 319 4.981674 CGCCTTCTTGCTGAAATTTTACAA 59.018 37.500 0.00 0.00 33.79 2.41
321 322 5.415701 AGATCGCCTTCTTGCTGAAATTTTA 59.584 36.000 0.00 0.00 33.79 1.52
322 323 4.219288 AGATCGCCTTCTTGCTGAAATTTT 59.781 37.500 0.00 0.00 33.79 1.82
323 324 3.760684 AGATCGCCTTCTTGCTGAAATTT 59.239 39.130 0.00 0.00 33.79 1.82
324 325 3.350833 AGATCGCCTTCTTGCTGAAATT 58.649 40.909 0.00 0.00 33.79 1.82
325 326 2.996631 AGATCGCCTTCTTGCTGAAAT 58.003 42.857 0.00 0.00 33.79 2.17
326 327 2.479566 AGATCGCCTTCTTGCTGAAA 57.520 45.000 0.00 0.00 33.79 2.69
327 328 2.079158 CAAGATCGCCTTCTTGCTGAA 58.921 47.619 9.59 0.00 44.30 3.02
328 329 1.730501 CAAGATCGCCTTCTTGCTGA 58.269 50.000 9.59 0.00 44.30 4.26
333 334 1.021390 CGCACCAAGATCGCCTTCTT 61.021 55.000 0.00 0.00 36.38 2.52
335 336 1.741770 ACGCACCAAGATCGCCTTC 60.742 57.895 0.00 0.00 31.42 3.46
336 337 2.034879 CACGCACCAAGATCGCCTT 61.035 57.895 0.00 0.00 34.91 4.35
339 340 1.083806 TGATCACGCACCAAGATCGC 61.084 55.000 0.00 0.00 40.72 4.58
340 341 0.926155 CTGATCACGCACCAAGATCG 59.074 55.000 0.00 0.00 40.72 3.69
341 342 0.654683 GCTGATCACGCACCAAGATC 59.345 55.000 10.95 0.00 38.84 2.75
342 343 0.036105 TGCTGATCACGCACCAAGAT 60.036 50.000 13.62 0.00 31.40 2.40
343 344 1.370810 TGCTGATCACGCACCAAGA 59.629 52.632 13.62 0.00 31.40 3.02
344 345 3.970721 TGCTGATCACGCACCAAG 58.029 55.556 13.62 0.00 31.40 3.61
352 353 1.100510 ATGCCATGTGTGCTGATCAC 58.899 50.000 0.00 0.00 45.82 3.06
353 354 1.842052 AATGCCATGTGTGCTGATCA 58.158 45.000 0.00 0.00 0.00 2.92
354 355 2.947652 ACTAATGCCATGTGTGCTGATC 59.052 45.455 0.00 0.00 0.00 2.92
355 356 2.947652 GACTAATGCCATGTGTGCTGAT 59.052 45.455 0.00 0.00 0.00 2.90
356 357 2.358957 GACTAATGCCATGTGTGCTGA 58.641 47.619 0.00 0.00 0.00 4.26
357 358 1.063027 CGACTAATGCCATGTGTGCTG 59.937 52.381 0.00 0.00 0.00 4.41
359 360 0.378257 CCGACTAATGCCATGTGTGC 59.622 55.000 0.00 0.00 0.00 4.57
361 362 0.908910 TCCCGACTAATGCCATGTGT 59.091 50.000 0.00 0.00 0.00 3.72
362 363 1.942657 CTTCCCGACTAATGCCATGTG 59.057 52.381 0.00 0.00 0.00 3.21
364 365 1.140852 TCCTTCCCGACTAATGCCATG 59.859 52.381 0.00 0.00 0.00 3.66
365 366 1.507140 TCCTTCCCGACTAATGCCAT 58.493 50.000 0.00 0.00 0.00 4.40
366 367 1.281419 TTCCTTCCCGACTAATGCCA 58.719 50.000 0.00 0.00 0.00 4.92
367 368 2.413310 TTTCCTTCCCGACTAATGCC 57.587 50.000 0.00 0.00 0.00 4.40
368 369 3.315470 GGATTTTCCTTCCCGACTAATGC 59.685 47.826 0.00 0.00 32.53 3.56
369 370 4.781934 AGGATTTTCCTTCCCGACTAATG 58.218 43.478 0.00 0.00 46.91 1.90
370 371 5.454897 GCTAGGATTTTCCTTCCCGACTAAT 60.455 44.000 0.59 0.00 46.91 1.73
371 372 4.141779 GCTAGGATTTTCCTTCCCGACTAA 60.142 45.833 0.59 0.00 46.91 2.24
372 373 3.387050 GCTAGGATTTTCCTTCCCGACTA 59.613 47.826 0.59 0.00 46.91 2.59
373 374 2.170817 GCTAGGATTTTCCTTCCCGACT 59.829 50.000 0.59 0.00 46.91 4.18
374 375 2.170817 AGCTAGGATTTTCCTTCCCGAC 59.829 50.000 0.59 0.00 46.91 4.79
376 377 3.494573 GGTAGCTAGGATTTTCCTTCCCG 60.495 52.174 0.59 0.00 46.91 5.14
377 378 3.181442 GGGTAGCTAGGATTTTCCTTCCC 60.181 52.174 0.59 0.00 46.91 3.97
378 379 3.458487 TGGGTAGCTAGGATTTTCCTTCC 59.542 47.826 0.59 0.00 46.91 3.46
380 381 4.164413 GTCTGGGTAGCTAGGATTTTCCTT 59.836 45.833 5.39 0.00 46.91 3.36
382 383 3.181453 GGTCTGGGTAGCTAGGATTTTCC 60.181 52.174 5.39 0.00 36.58 3.13
383 384 3.492829 CGGTCTGGGTAGCTAGGATTTTC 60.493 52.174 5.39 0.00 0.00 2.29
384 385 2.434702 CGGTCTGGGTAGCTAGGATTTT 59.565 50.000 5.39 0.00 0.00 1.82
385 386 2.040178 CGGTCTGGGTAGCTAGGATTT 58.960 52.381 5.39 0.00 0.00 2.17
386 387 1.705873 CGGTCTGGGTAGCTAGGATT 58.294 55.000 5.39 0.00 0.00 3.01
388 389 1.455217 GCGGTCTGGGTAGCTAGGA 60.455 63.158 5.39 0.00 0.00 2.94
389 390 2.846652 CGCGGTCTGGGTAGCTAGG 61.847 68.421 5.39 0.00 0.00 3.02
390 391 2.722487 CGCGGTCTGGGTAGCTAG 59.278 66.667 0.00 0.00 0.00 3.42
391 392 3.524606 GCGCGGTCTGGGTAGCTA 61.525 66.667 8.83 0.00 0.00 3.32
475 6945 3.554692 GATCTCGTTGCGGCGGTG 61.555 66.667 9.78 0.00 0.00 4.94
477 6947 4.514577 AGGATCTCGTTGCGGCGG 62.515 66.667 9.78 0.00 0.00 6.13
487 6957 8.468756 TTGCAGAACAAGGTACAGAGGATCTC 62.469 46.154 0.00 0.00 37.22 2.75
488 6958 6.747070 TTGCAGAACAAGGTACAGAGGATCT 61.747 44.000 0.00 0.00 39.11 2.75
489 6959 3.055819 TGCAGAACAAGGTACAGAGGATC 60.056 47.826 0.00 0.00 0.00 3.36
490 6960 2.906389 TGCAGAACAAGGTACAGAGGAT 59.094 45.455 0.00 0.00 0.00 3.24
491 6961 2.325484 TGCAGAACAAGGTACAGAGGA 58.675 47.619 0.00 0.00 0.00 3.71
500 6970 0.527565 CCCGGAATTGCAGAACAAGG 59.472 55.000 0.73 0.00 42.87 3.61
516 6986 1.268032 GCGTGCAGTATTTCATTCCCG 60.268 52.381 0.00 0.00 0.00 5.14
551 7021 0.674581 CCTCTTGCAATGGCTCGTGA 60.675 55.000 0.00 0.00 41.91 4.35
553 7023 0.392193 CTCCTCTTGCAATGGCTCGT 60.392 55.000 0.00 0.00 41.91 4.18
554 7024 1.094073 CCTCCTCTTGCAATGGCTCG 61.094 60.000 0.00 0.00 41.91 5.03
555 7025 0.750911 CCCTCCTCTTGCAATGGCTC 60.751 60.000 0.00 0.00 41.91 4.70
577 7054 2.812358 TCCAGCATGTAATCGCGTAT 57.188 45.000 5.77 0.00 0.00 3.06
578 7055 2.588027 TTCCAGCATGTAATCGCGTA 57.412 45.000 5.77 0.00 0.00 4.42
725 7208 2.936919 TATCCAAATCAGCGCAGGAT 57.063 45.000 11.47 9.74 41.65 3.24
746 7229 6.106673 GCAGTAATGCCGTGGATATTATAGT 58.893 40.000 3.16 0.00 0.00 2.12
799 7282 1.003464 GTGGCAGCAAATGGGGAAAAT 59.997 47.619 0.00 0.00 0.00 1.82
803 7287 2.676121 CGTGGCAGCAAATGGGGA 60.676 61.111 0.00 0.00 0.00 4.81
886 7370 2.126071 CCGATGACGCCGACAGTT 60.126 61.111 0.00 0.00 38.29 3.16
887 7371 3.338126 GACCGATGACGCCGACAGT 62.338 63.158 0.00 0.00 38.29 3.55
930 7414 0.744874 GGATGCCTGCTCGTAGTACA 59.255 55.000 0.38 0.00 0.00 2.90
931 7415 0.032267 GGGATGCCTGCTCGTAGTAC 59.968 60.000 0.00 0.00 0.00 2.73
932 7416 1.113517 GGGGATGCCTGCTCGTAGTA 61.114 60.000 2.19 0.00 0.00 1.82
933 7417 2.435693 GGGGATGCCTGCTCGTAGT 61.436 63.158 2.19 0.00 0.00 2.73
934 7418 2.374830 CTGGGGATGCCTGCTCGTAG 62.375 65.000 2.19 0.00 0.00 3.51
938 7422 4.891037 GGCTGGGGATGCCTGCTC 62.891 72.222 17.54 7.68 46.38 4.26
968 7452 2.467826 GGTCAGCAGCTGAATCGGC 61.468 63.158 27.04 13.64 42.46 5.54
985 7469 0.104855 ACCATGATGATCACCGACGG 59.895 55.000 13.61 13.61 0.00 4.79
1032 7524 2.071540 GGCAAACCTACGTGTACCTTC 58.928 52.381 0.00 0.00 0.00 3.46
1050 7542 0.449388 CGTCAGGCAAATGAGAAGGC 59.551 55.000 0.00 0.00 0.00 4.35
1172 7706 2.230508 TGACGCTGTATCGAGTTCCTTT 59.769 45.455 0.00 0.00 0.00 3.11
1243 7777 0.179029 ATATGGGGGTACGCTGTTGC 60.179 55.000 10.04 0.00 42.66 4.17
1316 7860 2.102252 GGAGGGTGCAGATGAGTAAGAG 59.898 54.545 0.00 0.00 0.00 2.85
1380 7936 1.227497 GCCGCTATCTCTGCAAGCT 60.227 57.895 5.83 0.00 34.03 3.74
1446 8002 1.152546 GGGTCCCTGCAACTTGGTT 60.153 57.895 0.00 0.00 0.00 3.67
1521 8079 3.188786 GTGATGCAGGACGGACGC 61.189 66.667 0.00 0.00 0.00 5.19
1556 8114 7.437748 GTTATGTGATACCTCTTGTGCTAGAT 58.562 38.462 0.00 0.00 0.00 1.98
1576 8135 2.552315 ACAAGCACAAACCTCGGTTATG 59.448 45.455 1.08 5.37 37.35 1.90
1779 8342 2.871096 AGAAGGAACGGCCATGTTTA 57.129 45.000 2.24 0.00 40.02 2.01
1813 8377 7.931407 TCAGGTTGTGGACAATGTATGTATATC 59.069 37.037 0.00 0.00 44.12 1.63
1953 8523 4.260784 GGATGAGTTTCAACACAGACACAC 60.261 45.833 0.00 0.00 33.18 3.82
2137 8742 3.948719 TCCGTGTTGGGGCTGTCC 61.949 66.667 0.00 0.00 38.76 4.02
2224 8829 1.690985 AGGGGCTAGTGAAGGAGGC 60.691 63.158 0.00 0.00 37.52 4.70
2269 8874 1.863454 GATGCCAGAGAGTGCAATACG 59.137 52.381 0.00 0.00 41.50 3.06
2272 8877 2.290768 ACTTGATGCCAGAGAGTGCAAT 60.291 45.455 0.00 0.00 41.50 3.56
2278 8883 2.469274 ACACACTTGATGCCAGAGAG 57.531 50.000 0.00 0.00 0.00 3.20
2279 8884 2.880268 CAAACACACTTGATGCCAGAGA 59.120 45.455 0.00 0.00 0.00 3.10
2332 8967 2.545526 GTCCAATGTATCCATGTCAGCG 59.454 50.000 0.00 0.00 0.00 5.18
2458 9097 3.814842 GCATATACAAGCATGGCTGTGTA 59.185 43.478 12.28 12.28 39.62 2.90
2552 9197 3.823304 ACAAGATCAGAAAAGCCACCTTC 59.177 43.478 0.00 0.00 0.00 3.46
2565 9211 3.748048 CCCACACTACACAACAAGATCAG 59.252 47.826 0.00 0.00 0.00 2.90
2637 9290 7.201444 CGTACTAAAGAAGTTGCAGTTGGATAG 60.201 40.741 0.00 0.00 39.80 2.08
2767 9441 3.432252 GGAACATACTACATGGCGTATGC 59.568 47.826 24.67 15.29 44.15 3.14
2770 9444 2.366266 GGGGAACATACTACATGGCGTA 59.634 50.000 0.00 0.00 0.00 4.42
2771 9445 1.140252 GGGGAACATACTACATGGCGT 59.860 52.381 0.00 0.00 0.00 5.68
2772 9446 1.140052 TGGGGAACATACTACATGGCG 59.860 52.381 0.00 0.00 0.00 5.69
2773 9447 3.290948 TTGGGGAACATACTACATGGC 57.709 47.619 0.00 0.00 0.00 4.40
2774 9448 4.855340 AGTTTGGGGAACATACTACATGG 58.145 43.478 0.00 0.00 39.21 3.66
2775 9449 9.621629 TTATAAGTTTGGGGAACATACTACATG 57.378 33.333 0.00 0.00 39.94 3.21
2800 9496 6.131264 TCCCTGCATTTCTCATAACATCATT 58.869 36.000 0.00 0.00 0.00 2.57
2896 9592 0.623723 GGGGGCAATAGAACTGGTCA 59.376 55.000 0.00 0.00 0.00 4.02
2919 9615 0.944386 CACCCGTTCTGGACAGTTTG 59.056 55.000 0.00 0.00 42.00 2.93
3029 9754 0.317160 TGTTGATGAACCTCGCGTCT 59.683 50.000 5.77 0.00 0.00 4.18
3134 9859 1.761174 GTTGGCCCAAGAGAGGTCA 59.239 57.895 0.00 0.00 37.17 4.02
3249 12055 1.920574 CTATGTTCACAACGGAGAGCG 59.079 52.381 0.00 0.00 0.00 5.03
3292 12099 8.471052 ACCTACGGTAAGCATTTCTGCACTTA 62.471 42.308 0.00 0.00 42.25 2.24
3327 12134 1.910722 CACTGCTACCCTGCCTCAT 59.089 57.895 0.00 0.00 0.00 2.90
3350 12158 5.106555 CGCCATCATTACTACCAATCCAATC 60.107 44.000 0.00 0.00 0.00 2.67
3362 12170 1.949525 GCATGAACCGCCATCATTACT 59.050 47.619 0.00 0.00 35.38 2.24
3372 12180 1.882912 TATGAGATGGCATGAACCGC 58.117 50.000 3.81 0.00 0.00 5.68
3373 12181 3.683340 CAGATATGAGATGGCATGAACCG 59.317 47.826 3.81 0.00 0.00 4.44
3467 12404 4.387598 GAGATACTCTGAATTGCTGCCAT 58.612 43.478 0.00 0.00 0.00 4.40
3631 12573 2.355756 GCTCAATTCACACACACACACT 59.644 45.455 0.00 0.00 0.00 3.55
3632 12574 2.355756 AGCTCAATTCACACACACACAC 59.644 45.455 0.00 0.00 0.00 3.82
3633 12575 2.642427 AGCTCAATTCACACACACACA 58.358 42.857 0.00 0.00 0.00 3.72
3658 12600 1.618343 CGTTCCTCAAAATTGCCCCTT 59.382 47.619 0.00 0.00 0.00 3.95
3753 12695 2.893489 GTGAGAAATGTTCTTTGCCCCT 59.107 45.455 0.00 0.00 40.87 4.79
3754 12696 2.029020 GGTGAGAAATGTTCTTTGCCCC 60.029 50.000 0.00 0.00 40.87 5.80
3755 12697 2.627699 TGGTGAGAAATGTTCTTTGCCC 59.372 45.455 0.00 0.00 40.87 5.36
3756 12698 3.068024 TGTGGTGAGAAATGTTCTTTGCC 59.932 43.478 0.00 0.00 40.87 4.52
3762 12705 4.228912 CCAAGTGTGGTGAGAAATGTTC 57.771 45.455 0.00 0.00 40.42 3.18
3775 12718 0.968901 ATCAGCCATGGCCAAGTGTG 60.969 55.000 33.14 22.62 43.17 3.82
3776 12719 0.968901 CATCAGCCATGGCCAAGTGT 60.969 55.000 33.14 10.96 43.17 3.55
3777 12720 0.968901 ACATCAGCCATGGCCAAGTG 60.969 55.000 33.14 25.83 43.17 3.16
3778 12721 0.682209 GACATCAGCCATGGCCAAGT 60.682 55.000 33.14 24.71 43.17 3.16
3779 12722 1.721664 CGACATCAGCCATGGCCAAG 61.722 60.000 33.14 22.48 37.18 3.61
3780 12723 1.750018 CGACATCAGCCATGGCCAA 60.750 57.895 33.14 21.58 37.18 4.52
3782 12725 1.228063 ATCGACATCAGCCATGGCC 60.228 57.895 33.14 15.49 37.18 5.36
3783 12726 1.512996 CCATCGACATCAGCCATGGC 61.513 60.000 30.12 30.12 37.12 4.40
3798 12741 1.093159 CTGCTCTGCCTTTGTCCATC 58.907 55.000 0.00 0.00 0.00 3.51
3801 12744 1.303155 AGCTGCTCTGCCTTTGTCC 60.303 57.895 0.00 0.00 0.00 4.02
3807 12750 3.768922 GGTCGAGCTGCTCTGCCT 61.769 66.667 25.59 0.00 0.00 4.75
3808 12751 4.074526 TGGTCGAGCTGCTCTGCC 62.075 66.667 25.59 24.41 0.00 4.85
3820 12763 0.249741 AACCAAACCGAGTCTGGTCG 60.250 55.000 2.49 0.94 42.72 4.79
3823 12766 1.346722 AGGTAACCAAACCGAGTCTGG 59.653 52.381 0.00 0.00 44.77 3.86
3824 12767 2.224209 ACAGGTAACCAAACCGAGTCTG 60.224 50.000 0.00 0.00 44.77 3.51
3825 12768 2.036862 GACAGGTAACCAAACCGAGTCT 59.963 50.000 11.77 0.00 44.77 3.24
3828 12771 1.346722 AGGACAGGTAACCAAACCGAG 59.653 52.381 0.00 0.00 44.77 4.63
3829 12772 1.426751 AGGACAGGTAACCAAACCGA 58.573 50.000 0.00 0.00 44.77 4.69
3830 12773 2.148768 GAAGGACAGGTAACCAAACCG 58.851 52.381 0.00 0.00 44.77 4.44
3831 12774 3.409570 GAGAAGGACAGGTAACCAAACC 58.590 50.000 0.00 0.00 40.06 3.27
3832 12775 3.064931 CGAGAAGGACAGGTAACCAAAC 58.935 50.000 0.00 0.00 37.17 2.93
3833 12776 2.967201 TCGAGAAGGACAGGTAACCAAA 59.033 45.455 0.00 0.00 37.17 3.28
3834 12777 2.298163 GTCGAGAAGGACAGGTAACCAA 59.702 50.000 0.00 0.00 36.91 3.67
4196 13139 2.105930 CTACAGCTCGCCCTCTGC 59.894 66.667 0.00 0.00 33.80 4.26
4197 13140 2.105930 GCTACAGCTCGCCCTCTG 59.894 66.667 0.00 0.00 38.21 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.