Multiple sequence alignment - TraesCS3B01G148300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G148300 chr3B 100.000 3822 0 0 1 3822 139773788 139777609 0.000000e+00 7059
1 TraesCS3B01G148300 chr3B 95.082 122 5 1 3141 3262 790640589 790640709 1.400000e-44 191
2 TraesCS3B01G148300 chr3D 85.954 3161 258 92 121 3144 90368627 90371738 0.000000e+00 3206
3 TraesCS3B01G148300 chr3D 90.476 546 36 6 3278 3822 90371749 90372279 0.000000e+00 706
4 TraesCS3B01G148300 chr3D 94.531 128 5 2 3135 3262 165446905 165447030 3.010000e-46 196
5 TraesCS3B01G148300 chr3A 86.781 1755 132 36 779 2463 106657333 106659057 0.000000e+00 1864
6 TraesCS3B01G148300 chr3A 94.662 562 22 4 3261 3822 106659784 106660337 0.000000e+00 865
7 TraesCS3B01G148300 chr3A 88.906 640 61 7 2504 3139 106659165 106659798 0.000000e+00 780
8 TraesCS3B01G148300 chr1D 96.774 124 3 1 3134 3257 108838876 108838754 5.000000e-49 206
9 TraesCS3B01G148300 chr5A 95.968 124 4 1 3140 3262 581473541 581473664 2.330000e-47 200
10 TraesCS3B01G148300 chr2D 95.238 126 6 0 3137 3262 556022244 556022119 2.330000e-47 200
11 TraesCS3B01G148300 chr2D 93.023 129 8 1 3134 3262 558937198 558937071 1.810000e-43 187
12 TraesCS3B01G148300 chr5D 95.238 126 5 1 3138 3262 361399972 361400097 8.370000e-47 198
13 TraesCS3B01G148300 chr5D 89.928 139 11 2 3124 3262 528280099 528280234 3.920000e-40 176
14 TraesCS3B01G148300 chr4D 92.913 127 7 2 3136 3262 396195509 396195385 2.350000e-42 183
15 TraesCS3B01G148300 chr7D 95.161 62 3 0 1136 1197 448756345 448756406 8.740000e-17 99
16 TraesCS3B01G148300 chr7B 95.161 62 3 0 1136 1197 466046991 466047052 8.740000e-17 99
17 TraesCS3B01G148300 chr7A 95.161 62 3 0 1136 1197 547337356 547337295 8.740000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G148300 chr3B 139773788 139777609 3821 False 7059.000000 7059 100.000000 1 3822 1 chr3B.!!$F1 3821
1 TraesCS3B01G148300 chr3D 90368627 90372279 3652 False 1956.000000 3206 88.215000 121 3822 2 chr3D.!!$F2 3701
2 TraesCS3B01G148300 chr3A 106657333 106660337 3004 False 1169.666667 1864 90.116333 779 3822 3 chr3A.!!$F1 3043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.241749 AATGGCTTGCACGTGTGATG 59.758 50.0 18.38 7.71 0.0 3.07 F
43 44 0.523072 GGCTTGCACGTGTGATGAAT 59.477 50.0 18.38 0.00 0.0 2.57 F
1354 1449 0.534203 GGTGAGTCTTGTTTCCGCCA 60.534 55.0 0.00 0.00 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1662 0.034896 GTCCCAAAAGTCTCCAGCGA 59.965 55.0 0.00 0.0 0.00 4.93 R
1910 2051 0.771127 CCTGTCAAGGTTCTTGGGGA 59.229 55.0 7.67 0.0 38.96 4.81 R
3224 3483 0.322816 GGCAAGTCTGAAGCATGGGA 60.323 55.0 0.00 0.0 0.00 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.756395 AGACCTATTGCCATTGATCTTAATG 57.244 36.000 0.00 0.00 37.70 1.90
33 34 3.763097 TTGATCTTAATGGCTTGCACG 57.237 42.857 0.00 0.00 0.00 5.34
34 35 2.710377 TGATCTTAATGGCTTGCACGT 58.290 42.857 0.00 0.00 0.00 4.49
35 36 2.419673 TGATCTTAATGGCTTGCACGTG 59.580 45.455 12.28 12.28 0.00 4.49
36 37 1.890876 TCTTAATGGCTTGCACGTGT 58.109 45.000 18.38 0.00 0.00 4.49
37 38 1.535028 TCTTAATGGCTTGCACGTGTG 59.465 47.619 18.38 9.04 0.00 3.82
38 39 1.535028 CTTAATGGCTTGCACGTGTGA 59.465 47.619 18.38 5.11 0.00 3.58
39 40 1.819928 TAATGGCTTGCACGTGTGAT 58.180 45.000 18.38 0.00 0.00 3.06
40 41 0.241749 AATGGCTTGCACGTGTGATG 59.758 50.000 18.38 7.71 0.00 3.07
41 42 0.606130 ATGGCTTGCACGTGTGATGA 60.606 50.000 18.38 0.00 0.00 2.92
42 43 0.817229 TGGCTTGCACGTGTGATGAA 60.817 50.000 18.38 2.06 0.00 2.57
43 44 0.523072 GGCTTGCACGTGTGATGAAT 59.477 50.000 18.38 0.00 0.00 2.57
44 45 1.466360 GGCTTGCACGTGTGATGAATC 60.466 52.381 18.38 0.00 0.00 2.52
45 46 1.197492 GCTTGCACGTGTGATGAATCA 59.803 47.619 18.38 0.33 0.00 2.57
46 47 2.350676 GCTTGCACGTGTGATGAATCAA 60.351 45.455 18.38 8.92 38.75 2.57
47 48 3.852939 GCTTGCACGTGTGATGAATCAAA 60.853 43.478 18.38 0.00 38.75 2.69
48 49 3.266541 TGCACGTGTGATGAATCAAAC 57.733 42.857 18.38 3.84 40.78 2.93
49 50 2.031245 TGCACGTGTGATGAATCAAACC 60.031 45.455 18.38 0.00 41.05 3.27
50 51 2.031245 GCACGTGTGATGAATCAAACCA 60.031 45.455 18.38 0.00 41.05 3.67
51 52 3.554524 CACGTGTGATGAATCAAACCAC 58.445 45.455 7.58 5.53 41.05 4.16
52 53 2.552315 ACGTGTGATGAATCAAACCACC 59.448 45.455 7.82 3.46 41.05 4.61
53 54 2.095263 CGTGTGATGAATCAAACCACCC 60.095 50.000 7.82 0.84 41.05 4.61
54 55 2.890311 GTGTGATGAATCAAACCACCCA 59.110 45.455 2.62 0.00 38.76 4.51
55 56 3.511146 GTGTGATGAATCAAACCACCCAT 59.489 43.478 2.62 0.00 38.76 4.00
56 57 3.763360 TGTGATGAATCAAACCACCCATC 59.237 43.478 9.90 0.00 38.75 3.51
57 58 3.016031 TGATGAATCAAACCACCCATCG 58.984 45.455 0.00 0.00 34.71 3.84
58 59 2.577606 TGAATCAAACCACCCATCGT 57.422 45.000 0.00 0.00 0.00 3.73
59 60 2.870175 TGAATCAAACCACCCATCGTT 58.130 42.857 0.00 0.00 0.00 3.85
60 61 2.556189 TGAATCAAACCACCCATCGTTG 59.444 45.455 0.00 0.00 0.00 4.10
61 62 2.286365 ATCAAACCACCCATCGTTGT 57.714 45.000 0.00 0.00 0.00 3.32
62 63 2.060050 TCAAACCACCCATCGTTGTT 57.940 45.000 0.00 0.00 31.88 2.83
63 64 1.678627 TCAAACCACCCATCGTTGTTG 59.321 47.619 0.00 0.00 31.04 3.33
64 65 1.678627 CAAACCACCCATCGTTGTTGA 59.321 47.619 0.00 0.00 31.04 3.18
65 66 2.286365 AACCACCCATCGTTGTTGAT 57.714 45.000 0.00 0.00 29.52 2.57
66 67 1.821216 ACCACCCATCGTTGTTGATC 58.179 50.000 0.00 0.00 0.00 2.92
67 68 1.094785 CCACCCATCGTTGTTGATCC 58.905 55.000 0.00 0.00 0.00 3.36
68 69 1.340017 CCACCCATCGTTGTTGATCCT 60.340 52.381 0.00 0.00 0.00 3.24
69 70 2.093181 CCACCCATCGTTGTTGATCCTA 60.093 50.000 0.00 0.00 0.00 2.94
70 71 3.198068 CACCCATCGTTGTTGATCCTAG 58.802 50.000 0.00 0.00 0.00 3.02
71 72 2.838202 ACCCATCGTTGTTGATCCTAGT 59.162 45.455 0.00 0.00 0.00 2.57
72 73 3.198068 CCCATCGTTGTTGATCCTAGTG 58.802 50.000 0.00 0.00 0.00 2.74
73 74 3.198068 CCATCGTTGTTGATCCTAGTGG 58.802 50.000 0.00 0.00 0.00 4.00
74 75 2.380084 TCGTTGTTGATCCTAGTGGC 57.620 50.000 0.00 0.00 0.00 5.01
75 76 1.899814 TCGTTGTTGATCCTAGTGGCT 59.100 47.619 0.00 0.00 0.00 4.75
76 77 3.093814 TCGTTGTTGATCCTAGTGGCTA 58.906 45.455 0.00 0.00 0.00 3.93
77 78 3.130516 TCGTTGTTGATCCTAGTGGCTAG 59.869 47.826 0.00 0.00 34.16 3.42
78 79 3.198872 GTTGTTGATCCTAGTGGCTAGC 58.801 50.000 6.04 6.04 33.12 3.42
79 80 2.466846 TGTTGATCCTAGTGGCTAGCA 58.533 47.619 18.24 0.00 33.12 3.49
80 81 2.837591 TGTTGATCCTAGTGGCTAGCAA 59.162 45.455 18.24 0.85 33.12 3.91
81 82 3.455910 TGTTGATCCTAGTGGCTAGCAAT 59.544 43.478 18.24 4.73 33.12 3.56
82 83 4.080356 TGTTGATCCTAGTGGCTAGCAATT 60.080 41.667 18.24 4.38 33.12 2.32
83 84 4.077300 TGATCCTAGTGGCTAGCAATTG 57.923 45.455 18.24 0.00 33.12 2.32
84 85 3.455910 TGATCCTAGTGGCTAGCAATTGT 59.544 43.478 18.24 0.00 33.12 2.71
85 86 4.653801 TGATCCTAGTGGCTAGCAATTGTA 59.346 41.667 18.24 0.00 33.12 2.41
86 87 4.672587 TCCTAGTGGCTAGCAATTGTAG 57.327 45.455 18.24 7.95 33.12 2.74
87 88 4.030913 TCCTAGTGGCTAGCAATTGTAGT 58.969 43.478 18.24 1.00 33.12 2.73
88 89 4.469945 TCCTAGTGGCTAGCAATTGTAGTT 59.530 41.667 18.24 0.00 33.12 2.24
89 90 4.572389 CCTAGTGGCTAGCAATTGTAGTTG 59.428 45.833 18.24 0.00 33.12 3.16
90 91 3.347216 AGTGGCTAGCAATTGTAGTTGG 58.653 45.455 18.24 0.00 0.00 3.77
91 92 3.081804 GTGGCTAGCAATTGTAGTTGGT 58.918 45.455 18.24 0.00 42.04 3.67
92 93 4.019681 AGTGGCTAGCAATTGTAGTTGGTA 60.020 41.667 18.24 0.00 40.08 3.25
93 94 4.698304 GTGGCTAGCAATTGTAGTTGGTAA 59.302 41.667 18.24 0.00 40.36 2.85
94 95 4.941263 TGGCTAGCAATTGTAGTTGGTAAG 59.059 41.667 18.24 0.00 40.36 2.34
95 96 4.201920 GGCTAGCAATTGTAGTTGGTAAGC 60.202 45.833 18.24 3.56 40.36 3.09
96 97 4.636206 GCTAGCAATTGTAGTTGGTAAGCT 59.364 41.667 10.63 0.00 40.36 3.74
97 98 5.123979 GCTAGCAATTGTAGTTGGTAAGCTT 59.876 40.000 10.63 3.48 40.36 3.74
98 99 5.629079 AGCAATTGTAGTTGGTAAGCTTC 57.371 39.130 0.00 0.00 37.98 3.86
99 100 5.070001 AGCAATTGTAGTTGGTAAGCTTCA 58.930 37.500 0.00 0.00 37.98 3.02
100 101 5.182001 AGCAATTGTAGTTGGTAAGCTTCAG 59.818 40.000 0.00 0.00 37.98 3.02
101 102 5.048713 GCAATTGTAGTTGGTAAGCTTCAGT 60.049 40.000 0.00 0.00 0.00 3.41
102 103 6.373779 CAATTGTAGTTGGTAAGCTTCAGTG 58.626 40.000 0.00 0.00 0.00 3.66
103 104 4.682778 TGTAGTTGGTAAGCTTCAGTGT 57.317 40.909 0.00 0.00 0.00 3.55
104 105 4.628074 TGTAGTTGGTAAGCTTCAGTGTC 58.372 43.478 0.00 0.00 0.00 3.67
105 106 4.344102 TGTAGTTGGTAAGCTTCAGTGTCT 59.656 41.667 0.00 0.00 0.00 3.41
106 107 5.537295 TGTAGTTGGTAAGCTTCAGTGTCTA 59.463 40.000 0.00 0.00 0.00 2.59
107 108 5.546621 AGTTGGTAAGCTTCAGTGTCTAA 57.453 39.130 0.00 0.00 0.00 2.10
108 109 5.925509 AGTTGGTAAGCTTCAGTGTCTAAA 58.074 37.500 0.00 0.00 0.00 1.85
109 110 6.534634 AGTTGGTAAGCTTCAGTGTCTAAAT 58.465 36.000 0.00 0.00 0.00 1.40
110 111 6.651225 AGTTGGTAAGCTTCAGTGTCTAAATC 59.349 38.462 0.00 0.00 0.00 2.17
111 112 5.168569 TGGTAAGCTTCAGTGTCTAAATCG 58.831 41.667 0.00 0.00 0.00 3.34
112 113 4.567159 GGTAAGCTTCAGTGTCTAAATCGG 59.433 45.833 0.00 0.00 0.00 4.18
113 114 2.622436 AGCTTCAGTGTCTAAATCGGC 58.378 47.619 0.00 0.00 0.00 5.54
114 115 2.028112 AGCTTCAGTGTCTAAATCGGCA 60.028 45.455 0.00 0.00 0.00 5.69
115 116 2.349886 GCTTCAGTGTCTAAATCGGCAG 59.650 50.000 0.00 0.00 0.00 4.85
116 117 2.010145 TCAGTGTCTAAATCGGCAGC 57.990 50.000 0.00 0.00 0.00 5.25
117 118 0.647410 CAGTGTCTAAATCGGCAGCG 59.353 55.000 0.00 0.00 0.00 5.18
118 119 1.084370 AGTGTCTAAATCGGCAGCGC 61.084 55.000 0.00 0.00 0.00 5.92
119 120 2.164663 TGTCTAAATCGGCAGCGCG 61.165 57.895 0.00 0.00 0.00 6.86
141 142 5.623169 CGGGGGTATAAAAACTATAAGCCA 58.377 41.667 0.00 0.00 0.00 4.75
142 143 6.243148 CGGGGGTATAAAAACTATAAGCCAT 58.757 40.000 0.00 0.00 0.00 4.40
144 145 6.436218 GGGGGTATAAAAACTATAAGCCATGG 59.564 42.308 7.63 7.63 0.00 3.66
147 148 7.014808 GGGTATAAAAACTATAAGCCATGGCAA 59.985 37.037 37.18 25.22 44.88 4.52
237 239 6.850752 AAACCTCAAACATATTTCGGGAAT 57.149 33.333 0.00 0.00 0.00 3.01
239 241 5.755849 ACCTCAAACATATTTCGGGAATCT 58.244 37.500 0.00 0.00 0.00 2.40
244 246 8.292444 TCAAACATATTTCGGGAATCTCAATT 57.708 30.769 0.00 0.00 0.00 2.32
245 247 8.748412 TCAAACATATTTCGGGAATCTCAATTT 58.252 29.630 0.00 0.00 0.00 1.82
256 258 8.677300 TCGGGAATCTCAATTTATTTCTGAAAG 58.323 33.333 8.95 0.00 0.00 2.62
270 272 6.752335 TTTCTGAAAGTGCGATCATTTTTG 57.248 33.333 0.00 0.00 33.13 2.44
271 273 5.687770 TCTGAAAGTGCGATCATTTTTGA 57.312 34.783 0.00 0.00 33.13 2.69
274 276 6.638063 TCTGAAAGTGCGATCATTTTTGAAAG 59.362 34.615 0.00 0.00 33.13 2.62
277 279 7.277539 TGAAAGTGCGATCATTTTTGAAAGTTT 59.722 29.630 0.00 0.00 33.13 2.66
278 280 6.515043 AGTGCGATCATTTTTGAAAGTTTG 57.485 33.333 0.00 0.00 0.00 2.93
279 281 6.272318 AGTGCGATCATTTTTGAAAGTTTGA 58.728 32.000 0.00 0.00 0.00 2.69
281 283 7.277539 AGTGCGATCATTTTTGAAAGTTTGAAA 59.722 29.630 0.00 0.00 0.00 2.69
282 284 8.063630 GTGCGATCATTTTTGAAAGTTTGAAAT 58.936 29.630 0.94 0.00 0.00 2.17
566 595 9.667107 TCTGAACGAAATATCTTAACAGGAATT 57.333 29.630 0.00 0.00 0.00 2.17
662 700 7.201435 CGAAACAAGAAACAGGAAAGAAAAAGG 60.201 37.037 0.00 0.00 0.00 3.11
664 702 7.239763 ACAAGAAACAGGAAAGAAAAAGGAA 57.760 32.000 0.00 0.00 0.00 3.36
667 705 8.443160 CAAGAAACAGGAAAGAAAAAGGAAAAC 58.557 33.333 0.00 0.00 0.00 2.43
672 710 7.323420 ACAGGAAAGAAAAAGGAAAACAGAAG 58.677 34.615 0.00 0.00 0.00 2.85
679 717 7.386059 AGAAAAAGGAAAACAGAAGCAGAAAA 58.614 30.769 0.00 0.00 0.00 2.29
681 719 8.565896 AAAAAGGAAAACAGAAGCAGAAAAAT 57.434 26.923 0.00 0.00 0.00 1.82
692 730 8.573035 ACAGAAGCAGAAAAATATACCGAAAAA 58.427 29.630 0.00 0.00 0.00 1.94
708 746 2.957484 AAAAACGAAAACGGCCGGGC 62.957 55.000 31.76 20.04 0.00 6.13
733 772 2.361230 GGGTGCCCCTGTGCTAAC 60.361 66.667 3.16 0.00 41.34 2.34
745 784 0.900421 GTGCTAACCCCCGACTACTT 59.100 55.000 0.00 0.00 0.00 2.24
751 790 2.202570 CCCCGACTACTTGACGCG 60.203 66.667 3.53 3.53 32.86 6.01
752 791 2.693762 CCCCGACTACTTGACGCGA 61.694 63.158 15.93 0.00 32.86 5.87
769 808 2.510691 ACGCGCGTGAAATAGGGG 60.511 61.111 37.37 0.93 0.00 4.79
799 838 1.584308 GATACAGCTCTCGCGTTGTTC 59.416 52.381 5.77 2.55 42.32 3.18
831 870 1.202359 GGCTGCAACGACCAAGAAAAA 60.202 47.619 0.50 0.00 0.00 1.94
884 931 3.255888 GGGTTTGCTTACCTTCTTCCTTG 59.744 47.826 7.58 0.00 38.30 3.61
900 947 3.540367 TTGGCCTCCGTCCGTTTCC 62.540 63.158 3.32 0.00 0.00 3.13
911 961 1.270550 GTCCGTTTCCCTCTACGAACA 59.729 52.381 0.00 0.00 40.03 3.18
915 965 2.067013 GTTTCCCTCTACGAACACAGC 58.933 52.381 0.00 0.00 0.00 4.40
916 966 1.334160 TTCCCTCTACGAACACAGCA 58.666 50.000 0.00 0.00 0.00 4.41
1013 1087 2.284625 ACTCATGGCGGTGGAGGA 60.285 61.111 0.00 0.00 32.98 3.71
1263 1346 2.019951 GCGCCGTCTCTGAAACGAA 61.020 57.895 4.88 0.00 42.62 3.85
1272 1355 4.467735 GTCTCTGAAACGAATTTGCTTCC 58.532 43.478 6.40 0.00 0.00 3.46
1275 1362 4.858935 TCTGAAACGAATTTGCTTCCTTG 58.141 39.130 6.40 0.00 0.00 3.61
1281 1368 2.416747 GAATTTGCTTCCTTGGTTGGC 58.583 47.619 0.00 0.00 0.00 4.52
1344 1439 1.617947 GCTCGGGATGGGTGAGTCTT 61.618 60.000 0.00 0.00 32.32 3.01
1350 1445 2.437413 GGATGGGTGAGTCTTGTTTCC 58.563 52.381 0.00 0.00 0.00 3.13
1351 1446 2.076863 GATGGGTGAGTCTTGTTTCCG 58.923 52.381 0.00 0.00 0.00 4.30
1354 1449 0.534203 GGTGAGTCTTGTTTCCGCCA 60.534 55.000 0.00 0.00 0.00 5.69
1438 1550 7.707893 ACCGATTGCTACGTTTACACTATTATT 59.292 33.333 0.00 0.00 0.00 1.40
1455 1567 7.066163 CACTATTATTGTGTGATTTCTGCCTCA 59.934 37.037 0.00 0.00 33.95 3.86
1494 1606 2.094442 TCGAGTGATTGTGCGGTCATAA 60.094 45.455 0.00 0.00 0.00 1.90
1495 1607 2.282555 CGAGTGATTGTGCGGTCATAAG 59.717 50.000 0.00 0.00 0.00 1.73
1496 1608 2.609459 GAGTGATTGTGCGGTCATAAGG 59.391 50.000 0.00 0.00 0.00 2.69
1497 1609 1.670811 GTGATTGTGCGGTCATAAGGG 59.329 52.381 0.00 0.00 0.00 3.95
1500 1612 2.799126 TTGTGCGGTCATAAGGGAAT 57.201 45.000 0.00 0.00 0.00 3.01
1501 1613 2.036958 TGTGCGGTCATAAGGGAATG 57.963 50.000 0.00 0.00 0.00 2.67
1503 1615 2.502130 TGTGCGGTCATAAGGGAATGTA 59.498 45.455 0.00 0.00 0.00 2.29
1504 1616 2.870411 GTGCGGTCATAAGGGAATGTAC 59.130 50.000 0.00 0.00 0.00 2.90
1530 1667 5.980116 AGCTTAGATGTGTAGTTAATCGCTG 59.020 40.000 0.00 0.00 0.00 5.18
1531 1668 5.175856 GCTTAGATGTGTAGTTAATCGCTGG 59.824 44.000 0.00 0.00 0.00 4.85
1539 1676 5.638234 GTGTAGTTAATCGCTGGAGACTTTT 59.362 40.000 0.00 0.00 0.00 2.27
1661 1799 7.531857 TGATAAAAAGAATTGCACCCTAACA 57.468 32.000 0.00 0.00 0.00 2.41
1906 2047 1.813728 AACCTCACTTCCCGACCGAC 61.814 60.000 0.00 0.00 0.00 4.79
1910 2051 0.682852 TCACTTCCCGACCGACAAAT 59.317 50.000 0.00 0.00 0.00 2.32
1916 2057 1.003112 CCGACCGACAAATCCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
1922 2063 1.271926 CCGACAAATCCCCAAGAACCT 60.272 52.381 0.00 0.00 0.00 3.50
1938 2079 3.716006 CTTGACAGGCCGCACACG 61.716 66.667 0.00 0.00 39.67 4.49
1963 2105 2.158957 GCTGGCTGCCACATTACTACTA 60.159 50.000 19.30 0.00 35.15 1.82
1966 2108 2.103263 GGCTGCCACATTACTACTAGCT 59.897 50.000 15.17 0.00 0.00 3.32
1991 2134 2.234661 CCGGCTCCATGCAGATATAAGA 59.765 50.000 0.00 0.00 45.15 2.10
2036 2181 0.171903 CAGCCCTGAAATTTGCTCCG 59.828 55.000 0.00 0.00 30.08 4.63
2051 2196 2.189257 CCGACGGGGAATCATGCA 59.811 61.111 5.81 0.00 38.47 3.96
2096 2241 3.202906 CAACCATTACACTATGGACCCG 58.797 50.000 9.49 0.00 46.63 5.28
2121 2266 2.803451 CTCTCGCGCTCTTGAGTAATT 58.197 47.619 5.56 0.00 33.88 1.40
2154 2305 5.568620 ATGACCCTATCCACAATACTTCC 57.431 43.478 0.00 0.00 0.00 3.46
2175 2326 2.713877 GCAAACCATGGGCATTTTGAT 58.286 42.857 23.00 0.00 31.79 2.57
2176 2327 3.678252 CGCAAACCATGGGCATTTTGATA 60.678 43.478 23.00 0.00 34.98 2.15
2181 2332 4.032310 ACCATGGGCATTTTGATACATGT 58.968 39.130 18.09 2.69 35.24 3.21
2184 2335 6.015180 ACCATGGGCATTTTGATACATGTATC 60.015 38.462 30.80 30.80 41.67 2.24
2217 2370 7.476667 ACACAACTATGAGTCTAAGATTCTCG 58.523 38.462 0.00 0.00 0.00 4.04
2271 2425 3.395607 TGGCTGCCATCTGGACTTATTAT 59.604 43.478 19.30 0.00 37.39 1.28
2291 2445 6.854496 TTATTGGCACTACCGTATTCATTC 57.146 37.500 0.00 0.00 43.94 2.67
2404 2558 2.341846 TTCTGAAGAACAACGGCCTT 57.658 45.000 0.00 0.00 0.00 4.35
2493 2649 4.507879 GCAATGCTGCCATGAACC 57.492 55.556 0.00 0.00 43.26 3.62
2511 2732 7.255381 CCATGAACCTTCTCCACATTTATCATC 60.255 40.741 0.00 0.00 0.00 2.92
2521 2742 8.363390 TCTCCACATTTATCATCATGTACTCTC 58.637 37.037 0.00 0.00 32.16 3.20
2543 2764 6.546034 TCTCAACTTTCCTCTTTTAACCTTGG 59.454 38.462 0.00 0.00 0.00 3.61
2614 2835 1.984026 CCGCCCATTCCAAAAGGCT 60.984 57.895 0.00 0.00 43.48 4.58
2653 2892 5.163652 ACAACAGTTTGGCTTACTCTTTGTC 60.164 40.000 8.80 0.00 37.00 3.18
2665 2906 3.813443 ACTCTTTGTCTGTCAATGTGCT 58.187 40.909 0.00 0.00 35.84 4.40
2667 2908 5.368145 ACTCTTTGTCTGTCAATGTGCTAA 58.632 37.500 0.00 0.00 35.84 3.09
2688 2929 9.547753 TGCTAATTCTCTTATGTATGAAGTTCC 57.452 33.333 0.00 0.00 0.00 3.62
2713 2954 5.978322 ACTTCTCGACAAGTAAAACTGACTC 59.022 40.000 4.07 0.00 34.70 3.36
2717 2958 2.132762 ACAAGTAAAACTGACTCGGCG 58.867 47.619 0.00 0.00 0.00 6.46
2719 2960 2.061740 AGTAAAACTGACTCGGCGAC 57.938 50.000 4.99 0.00 0.00 5.19
2720 2961 1.612463 AGTAAAACTGACTCGGCGACT 59.388 47.619 4.99 0.00 0.00 4.18
2727 2968 0.817654 TGACTCGGCGACTGATTCAT 59.182 50.000 4.99 0.00 0.00 2.57
2847 3088 0.533308 AAACAAAGCCGTAGCGACCA 60.533 50.000 0.00 0.00 46.67 4.02
2904 3146 6.670077 TTAAAACTTCAAAACCAATGCACC 57.330 33.333 0.00 0.00 0.00 5.01
2920 3162 4.063529 CCAGACATGGCGTGTGTT 57.936 55.556 18.67 2.11 42.36 3.32
2922 3164 0.603707 CCAGACATGGCGTGTGTTCT 60.604 55.000 18.67 5.34 42.36 3.01
2981 3224 6.317140 GTGAACTCTTTGGCAGATGATAATCA 59.683 38.462 0.00 0.00 0.00 2.57
2988 3231 4.769688 TGGCAGATGATAATCAGTTTCGT 58.230 39.130 0.00 0.00 0.00 3.85
3005 3249 1.798223 TCGTGTGCATTTCTTTCTCCG 59.202 47.619 0.00 0.00 0.00 4.63
3009 3253 3.251004 GTGTGCATTTCTTTCTCCGAACT 59.749 43.478 0.00 0.00 0.00 3.01
3021 3278 2.037136 CCGAACTGCTGGCTGGAAG 61.037 63.158 4.64 0.00 0.00 3.46
3058 3317 1.065709 TGCTCCGTTTGGTCCTAATCC 60.066 52.381 0.00 0.00 36.30 3.01
3061 3320 0.538118 CCGTTTGGTCCTAATCCGGA 59.462 55.000 6.61 6.61 36.12 5.14
3062 3321 1.472728 CCGTTTGGTCCTAATCCGGAG 60.473 57.143 11.34 0.00 36.12 4.63
3063 3322 1.479323 CGTTTGGTCCTAATCCGGAGA 59.521 52.381 11.34 0.00 32.70 3.71
3076 3335 3.330766 CGGAGAGGCTCTACGTTTG 57.669 57.895 35.38 12.57 45.40 2.93
3081 3340 4.677250 CGGAGAGGCTCTACGTTTGTAATT 60.677 45.833 35.38 2.17 45.40 1.40
3123 3382 3.425713 CGAATGCAGGCGCTGTGT 61.426 61.111 7.64 0.00 39.64 3.72
3139 3398 5.059710 GCGCTGTGTTTCTCATGTAATTTTC 59.940 40.000 0.00 0.00 0.00 2.29
3149 3408 9.814899 TTTCTCATGTAATTTTCTTTTTGAGCA 57.185 25.926 0.00 0.00 31.63 4.26
3150 3409 9.985730 TTCTCATGTAATTTTCTTTTTGAGCAT 57.014 25.926 0.00 0.00 31.63 3.79
3151 3410 9.630098 TCTCATGTAATTTTCTTTTTGAGCATC 57.370 29.630 0.00 0.00 31.63 3.91
3214 3473 9.347240 ACATAATGATGAAGAATAAAGTCAGGG 57.653 33.333 0.00 0.00 36.48 4.45
3215 3474 9.565090 CATAATGATGAAGAATAAAGTCAGGGA 57.435 33.333 0.00 0.00 34.73 4.20
3217 3476 8.461249 AATGATGAAGAATAAAGTCAGGGATG 57.539 34.615 0.00 0.00 0.00 3.51
3218 3477 7.199167 TGATGAAGAATAAAGTCAGGGATGA 57.801 36.000 0.00 0.00 0.00 2.92
3219 3478 7.050377 TGATGAAGAATAAAGTCAGGGATGAC 58.950 38.462 0.06 0.06 39.00 3.06
3220 3479 6.373005 TGAAGAATAAAGTCAGGGATGACA 57.627 37.500 10.72 0.00 41.02 3.58
3221 3480 6.409704 TGAAGAATAAAGTCAGGGATGACAG 58.590 40.000 10.72 0.00 41.02 3.51
3222 3481 6.013379 TGAAGAATAAAGTCAGGGATGACAGT 60.013 38.462 10.72 1.04 41.02 3.55
3223 3482 6.380079 AGAATAAAGTCAGGGATGACAGTT 57.620 37.500 10.72 6.81 41.02 3.16
3224 3483 6.784031 AGAATAAAGTCAGGGATGACAGTTT 58.216 36.000 10.72 6.13 41.02 2.66
3225 3484 6.881602 AGAATAAAGTCAGGGATGACAGTTTC 59.118 38.462 10.72 7.77 41.02 2.78
3226 3485 3.425162 AAGTCAGGGATGACAGTTTCC 57.575 47.619 10.72 0.00 41.02 3.13
3232 3491 2.134789 GGATGACAGTTTCCCATGCT 57.865 50.000 0.00 0.00 0.00 3.79
3233 3492 2.450476 GGATGACAGTTTCCCATGCTT 58.550 47.619 0.00 0.00 0.00 3.91
3234 3493 2.424956 GGATGACAGTTTCCCATGCTTC 59.575 50.000 0.00 0.00 0.00 3.86
3235 3494 2.655090 TGACAGTTTCCCATGCTTCA 57.345 45.000 0.00 0.00 0.00 3.02
3236 3495 2.507484 TGACAGTTTCCCATGCTTCAG 58.493 47.619 0.00 0.00 0.00 3.02
3237 3496 2.106338 TGACAGTTTCCCATGCTTCAGA 59.894 45.455 0.00 0.00 0.00 3.27
3238 3497 2.485814 GACAGTTTCCCATGCTTCAGAC 59.514 50.000 0.00 0.00 0.00 3.51
3239 3498 2.107204 ACAGTTTCCCATGCTTCAGACT 59.893 45.455 0.00 0.00 0.00 3.24
3240 3499 3.152341 CAGTTTCCCATGCTTCAGACTT 58.848 45.455 0.00 0.00 0.00 3.01
3241 3500 3.057736 CAGTTTCCCATGCTTCAGACTTG 60.058 47.826 0.00 0.00 0.00 3.16
3242 3501 1.538047 TTCCCATGCTTCAGACTTGC 58.462 50.000 0.00 0.00 0.00 4.01
3243 3502 0.322816 TCCCATGCTTCAGACTTGCC 60.323 55.000 0.00 0.00 0.00 4.52
3244 3503 0.609957 CCCATGCTTCAGACTTGCCA 60.610 55.000 0.00 0.00 0.00 4.92
3245 3504 0.809385 CCATGCTTCAGACTTGCCAG 59.191 55.000 0.00 0.00 0.00 4.85
3246 3505 1.612462 CCATGCTTCAGACTTGCCAGA 60.612 52.381 0.00 0.00 0.00 3.86
3247 3506 2.156917 CATGCTTCAGACTTGCCAGAA 58.843 47.619 0.00 0.00 0.00 3.02
3248 3507 1.597742 TGCTTCAGACTTGCCAGAAC 58.402 50.000 0.00 0.00 0.00 3.01
3249 3508 1.141657 TGCTTCAGACTTGCCAGAACT 59.858 47.619 0.00 0.00 0.00 3.01
3250 3509 2.368548 TGCTTCAGACTTGCCAGAACTA 59.631 45.455 0.00 0.00 0.00 2.24
3251 3510 3.181455 TGCTTCAGACTTGCCAGAACTAA 60.181 43.478 0.00 0.00 0.00 2.24
3252 3511 4.006319 GCTTCAGACTTGCCAGAACTAAT 58.994 43.478 0.00 0.00 0.00 1.73
3253 3512 5.178797 GCTTCAGACTTGCCAGAACTAATA 58.821 41.667 0.00 0.00 0.00 0.98
3254 3513 5.064071 GCTTCAGACTTGCCAGAACTAATAC 59.936 44.000 0.00 0.00 0.00 1.89
3255 3514 5.738619 TCAGACTTGCCAGAACTAATACA 57.261 39.130 0.00 0.00 0.00 2.29
3256 3515 6.109156 TCAGACTTGCCAGAACTAATACAA 57.891 37.500 0.00 0.00 0.00 2.41
3257 3516 5.932303 TCAGACTTGCCAGAACTAATACAAC 59.068 40.000 0.00 0.00 0.00 3.32
3258 3517 4.929808 AGACTTGCCAGAACTAATACAACG 59.070 41.667 0.00 0.00 0.00 4.10
3259 3518 4.638304 ACTTGCCAGAACTAATACAACGT 58.362 39.130 0.00 0.00 0.00 3.99
3260 3519 5.061179 ACTTGCCAGAACTAATACAACGTT 58.939 37.500 0.00 0.00 0.00 3.99
3261 3520 5.529800 ACTTGCCAGAACTAATACAACGTTT 59.470 36.000 0.00 0.00 0.00 3.60
3262 3521 5.600908 TGCCAGAACTAATACAACGTTTC 57.399 39.130 0.00 0.00 0.00 2.78
3263 3522 5.302360 TGCCAGAACTAATACAACGTTTCT 58.698 37.500 0.00 0.00 0.00 2.52
3264 3523 5.407387 TGCCAGAACTAATACAACGTTTCTC 59.593 40.000 0.00 0.00 0.00 2.87
3265 3524 5.407387 GCCAGAACTAATACAACGTTTCTCA 59.593 40.000 0.00 0.00 0.00 3.27
3266 3525 6.092259 GCCAGAACTAATACAACGTTTCTCAT 59.908 38.462 0.00 0.00 0.00 2.90
3267 3526 7.456253 CCAGAACTAATACAACGTTTCTCATG 58.544 38.462 0.00 0.00 0.00 3.07
3268 3527 7.117812 CCAGAACTAATACAACGTTTCTCATGT 59.882 37.037 0.00 0.00 0.00 3.21
3269 3528 9.135843 CAGAACTAATACAACGTTTCTCATGTA 57.864 33.333 0.00 0.00 33.24 2.29
3270 3529 9.701098 AGAACTAATACAACGTTTCTCATGTAA 57.299 29.630 0.00 0.00 32.53 2.41
3332 3591 1.873270 CTGCAAGCCCGTTTTACCCC 61.873 60.000 0.00 0.00 0.00 4.95
3403 3662 1.338200 GCCTTCGGCTCTGAAGAGAAA 60.338 52.381 17.54 1.65 46.64 2.52
3404 3663 2.679349 GCCTTCGGCTCTGAAGAGAAAT 60.679 50.000 17.54 0.00 46.64 2.17
3405 3664 2.935201 CCTTCGGCTCTGAAGAGAAATG 59.065 50.000 17.54 0.00 46.64 2.32
3407 3666 3.961480 TCGGCTCTGAAGAGAAATGAA 57.039 42.857 11.56 0.00 44.74 2.57
3408 3667 3.854666 TCGGCTCTGAAGAGAAATGAAG 58.145 45.455 11.56 0.00 44.74 3.02
3411 3670 4.009002 GGCTCTGAAGAGAAATGAAGCTT 58.991 43.478 11.56 0.00 44.74 3.74
3412 3671 4.142643 GGCTCTGAAGAGAAATGAAGCTTG 60.143 45.833 2.10 0.00 44.74 4.01
3413 3672 4.142643 GCTCTGAAGAGAAATGAAGCTTGG 60.143 45.833 2.10 0.00 44.74 3.61
3446 3705 3.433709 CACAGCAGATACACGAGAGAAG 58.566 50.000 0.00 0.00 0.00 2.85
3506 3768 2.105930 GCTACAGCTCGCCCTCTG 59.894 66.667 0.00 0.00 38.21 3.35
3507 3769 2.105930 CTACAGCTCGCCCTCTGC 59.894 66.667 0.00 0.00 33.80 4.26
3508 3770 3.438017 CTACAGCTCGCCCTCTGCC 62.438 68.421 0.00 0.00 36.24 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.718454 CCATTAAGATCAATGGCAATAGGTCT 59.282 38.462 10.88 0.00 46.28 3.85
1 2 6.917533 CCATTAAGATCAATGGCAATAGGTC 58.082 40.000 10.88 0.00 46.28 3.85
2 3 6.906157 CCATTAAGATCAATGGCAATAGGT 57.094 37.500 10.88 0.00 46.28 3.08
11 12 4.039703 CGTGCAAGCCATTAAGATCAATG 58.960 43.478 0.00 0.00 35.97 2.82
12 13 3.696051 ACGTGCAAGCCATTAAGATCAAT 59.304 39.130 0.00 0.00 0.00 2.57
13 14 3.081061 ACGTGCAAGCCATTAAGATCAA 58.919 40.909 0.00 0.00 0.00 2.57
14 15 2.419673 CACGTGCAAGCCATTAAGATCA 59.580 45.455 0.82 0.00 0.00 2.92
15 16 2.420022 ACACGTGCAAGCCATTAAGATC 59.580 45.455 17.22 0.00 0.00 2.75
16 17 2.162208 CACACGTGCAAGCCATTAAGAT 59.838 45.455 17.22 0.00 0.00 2.40
17 18 1.535028 CACACGTGCAAGCCATTAAGA 59.465 47.619 17.22 0.00 0.00 2.10
18 19 1.535028 TCACACGTGCAAGCCATTAAG 59.465 47.619 17.22 0.00 0.00 1.85
19 20 1.598882 TCACACGTGCAAGCCATTAA 58.401 45.000 17.22 0.00 0.00 1.40
20 21 1.468127 CATCACACGTGCAAGCCATTA 59.532 47.619 17.22 0.00 0.00 1.90
21 22 0.241749 CATCACACGTGCAAGCCATT 59.758 50.000 17.22 0.00 0.00 3.16
22 23 0.606130 TCATCACACGTGCAAGCCAT 60.606 50.000 17.22 0.00 0.00 4.40
23 24 0.817229 TTCATCACACGTGCAAGCCA 60.817 50.000 17.22 0.00 0.00 4.75
24 25 0.523072 ATTCATCACACGTGCAAGCC 59.477 50.000 17.22 0.00 0.00 4.35
25 26 1.197492 TGATTCATCACACGTGCAAGC 59.803 47.619 17.22 4.38 0.00 4.01
26 27 3.541071 TTGATTCATCACACGTGCAAG 57.459 42.857 17.22 6.16 36.36 4.01
27 28 3.549827 GGTTTGATTCATCACACGTGCAA 60.550 43.478 17.22 6.16 38.13 4.08
28 29 2.031245 GGTTTGATTCATCACACGTGCA 60.031 45.455 17.22 2.20 38.13 4.57
29 30 2.031245 TGGTTTGATTCATCACACGTGC 60.031 45.455 17.22 0.00 38.13 5.34
30 31 3.554524 GTGGTTTGATTCATCACACGTG 58.445 45.455 15.48 15.48 38.13 4.49
31 32 2.552315 GGTGGTTTGATTCATCACACGT 59.448 45.455 13.51 0.00 38.13 4.49
32 33 2.095263 GGGTGGTTTGATTCATCACACG 60.095 50.000 13.51 0.00 38.13 4.49
33 34 2.890311 TGGGTGGTTTGATTCATCACAC 59.110 45.455 13.51 11.49 36.90 3.82
34 35 3.235750 TGGGTGGTTTGATTCATCACA 57.764 42.857 13.51 1.01 36.36 3.58
35 36 3.181497 CGATGGGTGGTTTGATTCATCAC 60.181 47.826 0.00 6.71 36.36 3.06
36 37 3.016031 CGATGGGTGGTTTGATTCATCA 58.984 45.455 0.00 0.00 32.88 3.07
37 38 3.016736 ACGATGGGTGGTTTGATTCATC 58.983 45.455 0.00 0.00 0.00 2.92
38 39 3.085952 ACGATGGGTGGTTTGATTCAT 57.914 42.857 0.00 0.00 0.00 2.57
39 40 2.556189 CAACGATGGGTGGTTTGATTCA 59.444 45.455 0.00 0.00 0.00 2.57
40 41 2.556622 ACAACGATGGGTGGTTTGATTC 59.443 45.455 0.00 0.00 23.23 2.52
41 42 2.593026 ACAACGATGGGTGGTTTGATT 58.407 42.857 0.00 0.00 23.23 2.57
42 43 2.286365 ACAACGATGGGTGGTTTGAT 57.714 45.000 0.00 0.00 23.23 2.57
43 44 1.678627 CAACAACGATGGGTGGTTTGA 59.321 47.619 0.00 0.00 39.89 2.69
44 45 1.678627 TCAACAACGATGGGTGGTTTG 59.321 47.619 0.00 0.00 39.89 2.93
45 46 2.060050 TCAACAACGATGGGTGGTTT 57.940 45.000 0.00 0.00 39.89 3.27
46 47 2.159382 GATCAACAACGATGGGTGGTT 58.841 47.619 0.00 0.00 43.76 3.67
47 48 1.613255 GGATCAACAACGATGGGTGGT 60.613 52.381 0.00 0.00 32.79 4.16
48 49 1.094785 GGATCAACAACGATGGGTGG 58.905 55.000 0.00 0.00 0.00 4.61
49 50 2.113860 AGGATCAACAACGATGGGTG 57.886 50.000 0.00 0.00 0.00 4.61
50 51 2.838202 ACTAGGATCAACAACGATGGGT 59.162 45.455 0.00 0.00 0.00 4.51
51 52 3.198068 CACTAGGATCAACAACGATGGG 58.802 50.000 0.00 0.00 0.00 4.00
52 53 3.198068 CCACTAGGATCAACAACGATGG 58.802 50.000 0.00 0.00 36.89 3.51
53 54 2.609459 GCCACTAGGATCAACAACGATG 59.391 50.000 0.00 0.00 36.89 3.84
54 55 2.501723 AGCCACTAGGATCAACAACGAT 59.498 45.455 0.00 0.00 36.89 3.73
55 56 1.899814 AGCCACTAGGATCAACAACGA 59.100 47.619 0.00 0.00 36.89 3.85
56 57 2.386661 AGCCACTAGGATCAACAACG 57.613 50.000 0.00 0.00 36.89 4.10
57 58 3.198872 GCTAGCCACTAGGATCAACAAC 58.801 50.000 2.29 0.00 34.88 3.32
58 59 2.837591 TGCTAGCCACTAGGATCAACAA 59.162 45.455 13.29 0.00 34.88 2.83
59 60 2.466846 TGCTAGCCACTAGGATCAACA 58.533 47.619 13.29 0.00 34.88 3.33
60 61 3.543680 TTGCTAGCCACTAGGATCAAC 57.456 47.619 13.29 0.00 34.57 3.18
61 62 4.080356 ACAATTGCTAGCCACTAGGATCAA 60.080 41.667 13.29 0.00 34.57 2.57
62 63 3.455910 ACAATTGCTAGCCACTAGGATCA 59.544 43.478 13.29 0.00 34.57 2.92
63 64 4.078639 ACAATTGCTAGCCACTAGGATC 57.921 45.455 13.29 0.00 34.57 3.36
64 65 4.656112 ACTACAATTGCTAGCCACTAGGAT 59.344 41.667 13.29 0.00 34.57 3.24
65 66 4.030913 ACTACAATTGCTAGCCACTAGGA 58.969 43.478 13.29 0.00 34.88 2.94
66 67 4.408182 ACTACAATTGCTAGCCACTAGG 57.592 45.455 13.29 0.00 34.88 3.02
67 68 4.572389 CCAACTACAATTGCTAGCCACTAG 59.428 45.833 13.29 6.39 37.16 2.57
68 69 4.019681 ACCAACTACAATTGCTAGCCACTA 60.020 41.667 13.29 0.00 0.00 2.74
69 70 3.244911 ACCAACTACAATTGCTAGCCACT 60.245 43.478 13.29 0.00 0.00 4.00
70 71 3.081804 ACCAACTACAATTGCTAGCCAC 58.918 45.455 13.29 0.00 0.00 5.01
71 72 3.433306 ACCAACTACAATTGCTAGCCA 57.567 42.857 13.29 0.19 0.00 4.75
72 73 4.201920 GCTTACCAACTACAATTGCTAGCC 60.202 45.833 13.29 0.00 0.00 3.93
73 74 4.636206 AGCTTACCAACTACAATTGCTAGC 59.364 41.667 8.10 8.10 0.00 3.42
74 75 6.371548 TGAAGCTTACCAACTACAATTGCTAG 59.628 38.462 5.05 9.09 0.00 3.42
75 76 6.234920 TGAAGCTTACCAACTACAATTGCTA 58.765 36.000 5.05 0.00 0.00 3.49
76 77 5.070001 TGAAGCTTACCAACTACAATTGCT 58.930 37.500 5.05 0.00 0.00 3.91
77 78 5.048713 ACTGAAGCTTACCAACTACAATTGC 60.049 40.000 5.05 0.00 0.00 3.56
78 79 6.017109 ACACTGAAGCTTACCAACTACAATTG 60.017 38.462 3.24 3.24 0.00 2.32
79 80 6.062095 ACACTGAAGCTTACCAACTACAATT 58.938 36.000 0.00 0.00 0.00 2.32
80 81 5.621193 ACACTGAAGCTTACCAACTACAAT 58.379 37.500 0.00 0.00 0.00 2.71
81 82 5.031066 ACACTGAAGCTTACCAACTACAA 57.969 39.130 0.00 0.00 0.00 2.41
82 83 4.344102 AGACACTGAAGCTTACCAACTACA 59.656 41.667 0.00 0.00 0.00 2.74
83 84 4.884247 AGACACTGAAGCTTACCAACTAC 58.116 43.478 0.00 0.00 0.00 2.73
84 85 6.659745 TTAGACACTGAAGCTTACCAACTA 57.340 37.500 0.00 0.00 0.00 2.24
85 86 5.546621 TTAGACACTGAAGCTTACCAACT 57.453 39.130 0.00 0.00 0.00 3.16
86 87 6.401153 CGATTTAGACACTGAAGCTTACCAAC 60.401 42.308 0.00 0.00 0.00 3.77
87 88 5.637810 CGATTTAGACACTGAAGCTTACCAA 59.362 40.000 0.00 0.00 0.00 3.67
88 89 5.168569 CGATTTAGACACTGAAGCTTACCA 58.831 41.667 0.00 0.00 0.00 3.25
89 90 4.567159 CCGATTTAGACACTGAAGCTTACC 59.433 45.833 0.00 0.00 0.00 2.85
90 91 4.033014 GCCGATTTAGACACTGAAGCTTAC 59.967 45.833 0.00 0.00 0.00 2.34
91 92 4.181578 GCCGATTTAGACACTGAAGCTTA 58.818 43.478 0.00 0.00 0.00 3.09
92 93 3.003480 GCCGATTTAGACACTGAAGCTT 58.997 45.455 0.00 0.00 0.00 3.74
93 94 2.028112 TGCCGATTTAGACACTGAAGCT 60.028 45.455 0.00 0.00 0.00 3.74
94 95 2.346803 TGCCGATTTAGACACTGAAGC 58.653 47.619 0.00 0.00 0.00 3.86
95 96 2.349886 GCTGCCGATTTAGACACTGAAG 59.650 50.000 0.00 0.00 0.00 3.02
96 97 2.346803 GCTGCCGATTTAGACACTGAA 58.653 47.619 0.00 0.00 0.00 3.02
97 98 1.735700 CGCTGCCGATTTAGACACTGA 60.736 52.381 0.00 0.00 36.29 3.41
98 99 0.647410 CGCTGCCGATTTAGACACTG 59.353 55.000 0.00 0.00 36.29 3.66
99 100 1.084370 GCGCTGCCGATTTAGACACT 61.084 55.000 0.00 0.00 36.29 3.55
100 101 1.348594 GCGCTGCCGATTTAGACAC 59.651 57.895 0.00 0.00 36.29 3.67
101 102 2.164663 CGCGCTGCCGATTTAGACA 61.165 57.895 5.56 0.00 36.29 3.41
102 103 2.621000 CGCGCTGCCGATTTAGAC 59.379 61.111 5.56 0.00 36.29 2.59
103 104 2.584970 CCGCGCTGCCGATTTAGA 60.585 61.111 5.56 0.00 36.29 2.10
104 105 3.640000 CCCGCGCTGCCGATTTAG 61.640 66.667 5.56 0.00 36.29 1.85
111 112 3.760700 TTTATACCCCCGCGCTGCC 62.761 63.158 5.56 0.00 0.00 4.85
112 113 1.378124 TTTTTATACCCCCGCGCTGC 61.378 55.000 5.56 0.00 0.00 5.25
113 114 0.379316 GTTTTTATACCCCCGCGCTG 59.621 55.000 5.56 0.00 0.00 5.18
114 115 0.253894 AGTTTTTATACCCCCGCGCT 59.746 50.000 5.56 0.00 0.00 5.92
115 116 1.952193 TAGTTTTTATACCCCCGCGC 58.048 50.000 0.00 0.00 0.00 6.86
116 117 4.152938 GCTTATAGTTTTTATACCCCCGCG 59.847 45.833 0.00 0.00 0.00 6.46
117 118 4.456911 GGCTTATAGTTTTTATACCCCCGC 59.543 45.833 0.00 0.00 0.00 6.13
118 119 5.623169 TGGCTTATAGTTTTTATACCCCCG 58.377 41.667 0.00 0.00 0.00 5.73
119 120 6.436218 CCATGGCTTATAGTTTTTATACCCCC 59.564 42.308 0.00 0.00 0.00 5.40
208 210 9.430623 CCCGAAATATGTTTGAGGTTTTAAAAT 57.569 29.630 3.52 0.00 0.00 1.82
212 214 7.762588 TTCCCGAAATATGTTTGAGGTTTTA 57.237 32.000 0.00 0.00 0.00 1.52
216 218 5.755849 AGATTCCCGAAATATGTTTGAGGT 58.244 37.500 0.00 0.00 0.00 3.85
220 222 8.931385 AAATTGAGATTCCCGAAATATGTTTG 57.069 30.769 0.00 0.00 0.00 2.93
231 233 8.462016 ACTTTCAGAAATAAATTGAGATTCCCG 58.538 33.333 0.00 0.00 0.00 5.14
237 239 7.433708 TCGCACTTTCAGAAATAAATTGAGA 57.566 32.000 0.00 0.00 0.00 3.27
239 241 7.815641 TGATCGCACTTTCAGAAATAAATTGA 58.184 30.769 0.00 0.00 0.00 2.57
244 246 8.914654 CAAAAATGATCGCACTTTCAGAAATAA 58.085 29.630 0.00 0.00 0.00 1.40
245 247 8.296000 TCAAAAATGATCGCACTTTCAGAAATA 58.704 29.630 0.00 0.00 0.00 1.40
246 248 7.147312 TCAAAAATGATCGCACTTTCAGAAAT 58.853 30.769 0.00 0.00 0.00 2.17
250 252 6.418819 ACTTTCAAAAATGATCGCACTTTCAG 59.581 34.615 0.00 0.00 0.00 3.02
252 254 6.753897 ACTTTCAAAAATGATCGCACTTTC 57.246 33.333 0.00 0.00 0.00 2.62
256 258 6.509317 TCAAACTTTCAAAAATGATCGCAC 57.491 33.333 0.00 0.00 0.00 5.34
630 668 5.585500 TCCTGTTTCTTGTTTCGTTATCG 57.415 39.130 0.00 0.00 38.55 2.92
637 675 7.817478 TCCTTTTTCTTTCCTGTTTCTTGTTTC 59.183 33.333 0.00 0.00 0.00 2.78
641 679 8.443160 GTTTTCCTTTTTCTTTCCTGTTTCTTG 58.557 33.333 0.00 0.00 0.00 3.02
662 700 8.234546 TCGGTATATTTTTCTGCTTCTGTTTTC 58.765 33.333 0.00 0.00 0.00 2.29
664 702 7.681939 TCGGTATATTTTTCTGCTTCTGTTT 57.318 32.000 0.00 0.00 0.00 2.83
667 705 8.964420 TTTTTCGGTATATTTTTCTGCTTCTG 57.036 30.769 0.00 0.00 0.00 3.02
719 758 3.657350 GGGGTTAGCACAGGGGCA 61.657 66.667 0.00 0.00 35.83 5.36
720 759 4.442454 GGGGGTTAGCACAGGGGC 62.442 72.222 0.00 0.00 0.00 5.80
733 772 2.183555 GCGTCAAGTAGTCGGGGG 59.816 66.667 0.00 0.00 0.00 5.40
751 790 2.522638 CCCCTATTTCACGCGCGTC 61.523 63.158 35.61 0.00 0.00 5.19
752 791 2.510691 CCCCTATTTCACGCGCGT 60.511 61.111 32.73 32.73 0.00 6.01
757 796 0.730840 GCGGAAACCCCTATTTCACG 59.269 55.000 1.11 3.57 39.85 4.35
760 799 1.099295 CCCGCGGAAACCCCTATTTC 61.099 60.000 30.73 0.00 37.78 2.17
769 808 1.152383 GAGCTGTATCCCGCGGAAAC 61.152 60.000 30.73 21.16 34.34 2.78
831 870 0.482887 AACCCTACTTTGCTTGGGCT 59.517 50.000 0.00 0.00 43.25 5.19
884 931 4.772687 GGGAAACGGACGGAGGCC 62.773 72.222 0.00 0.00 0.00 5.19
900 947 1.419374 GTGTGCTGTGTTCGTAGAGG 58.581 55.000 0.00 0.00 38.43 3.69
1013 1087 1.392710 CCTCACGCCCTCGGTTATCT 61.393 60.000 0.00 0.00 40.69 1.98
1126 1206 3.437795 GATGCGGTTGCTGCTGCT 61.438 61.111 17.00 0.00 43.34 4.24
1211 1291 2.084546 GATCGAACCAAAAGAGGTGGG 58.915 52.381 0.00 0.00 42.25 4.61
1263 1346 1.345415 CAGCCAACCAAGGAAGCAAAT 59.655 47.619 0.00 0.00 0.00 2.32
1272 1355 0.036732 TACCTCTGCAGCCAACCAAG 59.963 55.000 9.47 0.00 0.00 3.61
1275 1362 2.498167 CATATACCTCTGCAGCCAACC 58.502 52.381 9.47 0.00 0.00 3.77
1344 1439 1.675310 CAGAGGCATGGCGGAAACA 60.675 57.895 14.30 0.00 0.00 2.83
1350 1445 1.001706 CAATCAATCAGAGGCATGGCG 60.002 52.381 14.30 0.00 0.00 5.69
1351 1446 2.304092 TCAATCAATCAGAGGCATGGC 58.696 47.619 12.14 12.14 0.00 4.40
1354 1449 3.321111 GGCATTCAATCAATCAGAGGCAT 59.679 43.478 0.00 0.00 0.00 4.40
1438 1550 3.144657 ACATGAGGCAGAAATCACACA 57.855 42.857 0.00 0.00 0.00 3.72
1455 1567 4.142902 ACTCGATCAAATTCGCGAAAACAT 60.143 37.500 27.23 14.90 38.97 2.71
1494 1606 5.900123 ACACATCTAAGCTAGTACATTCCCT 59.100 40.000 0.00 0.00 0.00 4.20
1495 1607 6.163135 ACACATCTAAGCTAGTACATTCCC 57.837 41.667 0.00 0.00 0.00 3.97
1496 1608 7.942990 ACTACACATCTAAGCTAGTACATTCC 58.057 38.462 0.00 0.00 0.00 3.01
1501 1613 9.596677 CGATTAACTACACATCTAAGCTAGTAC 57.403 37.037 0.00 0.00 0.00 2.73
1503 1615 7.013464 AGCGATTAACTACACATCTAAGCTAGT 59.987 37.037 0.00 0.00 0.00 2.57
1504 1616 7.324856 CAGCGATTAACTACACATCTAAGCTAG 59.675 40.741 0.00 0.00 0.00 3.42
1525 1662 0.034896 GTCCCAAAAGTCTCCAGCGA 59.965 55.000 0.00 0.00 0.00 4.93
1530 1667 2.567615 TCTAGCTGTCCCAAAAGTCTCC 59.432 50.000 0.00 0.00 0.00 3.71
1531 1668 3.963428 TCTAGCTGTCCCAAAAGTCTC 57.037 47.619 0.00 0.00 0.00 3.36
1539 1676 0.975556 TTGCGGATCTAGCTGTCCCA 60.976 55.000 13.23 0.00 35.28 4.37
1700 1839 3.047857 TGCATATCCCATGACAGGAGAA 58.952 45.455 0.00 0.00 36.67 2.87
1704 1843 3.150458 ACATGCATATCCCATGACAGG 57.850 47.619 16.07 0.00 41.97 4.00
1873 2014 5.659440 AGTGAGGTTTCTTCTTGCAAAAA 57.341 34.783 0.00 0.00 0.00 1.94
1874 2015 5.394115 GGAAGTGAGGTTTCTTCTTGCAAAA 60.394 40.000 0.00 0.00 39.67 2.44
1875 2016 4.097892 GGAAGTGAGGTTTCTTCTTGCAAA 59.902 41.667 0.00 0.00 39.67 3.68
1876 2017 3.632145 GGAAGTGAGGTTTCTTCTTGCAA 59.368 43.478 0.00 0.00 39.67 4.08
1877 2018 3.214328 GGAAGTGAGGTTTCTTCTTGCA 58.786 45.455 0.00 0.00 39.67 4.08
1878 2019 2.554462 GGGAAGTGAGGTTTCTTCTTGC 59.446 50.000 0.00 0.00 39.67 4.01
1879 2020 2.808543 CGGGAAGTGAGGTTTCTTCTTG 59.191 50.000 0.00 0.00 39.67 3.02
1906 2047 3.230134 TGTCAAGGTTCTTGGGGATTTG 58.770 45.455 7.67 0.00 0.00 2.32
1910 2051 0.771127 CCTGTCAAGGTTCTTGGGGA 59.229 55.000 7.67 0.00 38.96 4.81
1916 2057 2.032681 GCGGCCTGTCAAGGTTCT 59.967 61.111 0.00 0.00 46.43 3.01
1944 2085 2.158957 GCTAGTAGTAATGTGGCAGCCA 60.159 50.000 11.22 11.22 0.00 4.75
1948 2089 2.434336 CCCAGCTAGTAGTAATGTGGCA 59.566 50.000 0.00 0.00 0.00 4.92
1975 2117 4.102996 TGGCAACTCTTATATCTGCATGGA 59.897 41.667 0.00 0.00 34.66 3.41
1991 2134 1.062488 AACCTCCCTCACTGGCAACT 61.062 55.000 0.00 0.00 37.61 3.16
2036 2181 1.097547 CCAGTGCATGATTCCCCGTC 61.098 60.000 0.00 0.00 0.00 4.79
2051 2196 0.409876 TCCTGAGTAGCACCTCCAGT 59.590 55.000 0.78 0.00 0.00 4.00
2154 2305 0.797542 CAAAATGCCCATGGTTTGCG 59.202 50.000 11.73 0.00 0.00 4.85
2242 2395 1.376543 CAGATGGCAGCCAGTAACTG 58.623 55.000 21.51 20.07 36.75 3.16
2248 2402 0.543277 TAAGTCCAGATGGCAGCCAG 59.457 55.000 21.51 6.14 36.75 4.85
2271 2425 4.188462 CTGAATGAATACGGTAGTGCCAA 58.812 43.478 0.00 0.00 36.97 4.52
2291 2445 6.332630 AGAAAACATCAAACCACAGAAACTG 58.667 36.000 0.00 0.00 37.52 3.16
2404 2558 4.632153 GGTTCTTACTCTTCTCAACAGCA 58.368 43.478 0.00 0.00 0.00 4.41
2493 2649 8.899427 AGTACATGATGATAAATGTGGAGAAG 57.101 34.615 0.00 0.00 37.57 2.85
2511 2732 7.736447 AAAAGAGGAAAGTTGAGAGTACATG 57.264 36.000 0.00 0.00 0.00 3.21
2521 2742 6.127451 ACACCAAGGTTAAAAGAGGAAAGTTG 60.127 38.462 0.00 0.00 0.00 3.16
2543 2764 5.127194 TGGATGTCCTAATCTCTACACACAC 59.873 44.000 0.09 0.00 36.82 3.82
2614 2835 7.929785 CCAAACTGTTGTTACTCTCTTACCTTA 59.070 37.037 0.00 0.00 34.96 2.69
2653 2892 8.206325 ACATAAGAGAATTAGCACATTGACAG 57.794 34.615 0.00 0.00 0.00 3.51
2688 2929 5.749109 AGTCAGTTTTACTTGTCGAGAAGTG 59.251 40.000 31.71 17.35 36.80 3.16
2693 2934 3.669122 CCGAGTCAGTTTTACTTGTCGAG 59.331 47.826 0.00 0.00 28.74 4.04
2694 2935 3.635331 CCGAGTCAGTTTTACTTGTCGA 58.365 45.455 0.00 0.00 28.74 4.20
2695 2936 2.155155 GCCGAGTCAGTTTTACTTGTCG 59.845 50.000 0.00 0.00 0.00 4.35
2696 2937 2.155155 CGCCGAGTCAGTTTTACTTGTC 59.845 50.000 0.00 0.00 0.00 3.18
2701 2942 1.719780 CAGTCGCCGAGTCAGTTTTAC 59.280 52.381 0.00 0.00 0.00 2.01
2713 2954 0.807275 TCTGCATGAATCAGTCGCCG 60.807 55.000 0.00 0.00 33.48 6.46
2717 2958 7.153315 TCTATCTCAATCTGCATGAATCAGTC 58.847 38.462 0.00 0.00 33.48 3.51
2719 2960 7.156000 ACTCTATCTCAATCTGCATGAATCAG 58.844 38.462 0.00 0.00 0.00 2.90
2720 2961 7.063934 ACTCTATCTCAATCTGCATGAATCA 57.936 36.000 0.00 0.00 0.00 2.57
2727 2968 4.033009 TCCCAACTCTATCTCAATCTGCA 58.967 43.478 0.00 0.00 0.00 4.41
2904 3146 1.069703 CAAGAACACACGCCATGTCTG 60.070 52.381 0.00 0.00 40.64 3.51
2922 3164 9.919348 GACACTACGAAAATACAAGTTAAACAA 57.081 29.630 0.00 0.00 0.00 2.83
2981 3224 4.261197 GGAGAAAGAAATGCACACGAAACT 60.261 41.667 0.00 0.00 0.00 2.66
2988 3231 3.250762 CAGTTCGGAGAAAGAAATGCACA 59.749 43.478 0.00 0.00 45.90 4.57
3005 3249 2.185004 TTACTTCCAGCCAGCAGTTC 57.815 50.000 0.00 0.00 0.00 3.01
3009 3253 3.439857 AAAGATTACTTCCAGCCAGCA 57.560 42.857 0.00 0.00 35.05 4.41
3021 3278 3.153735 GAGCACACGCGAAAAAGATTAC 58.846 45.455 15.93 0.00 45.49 1.89
3058 3317 0.526662 ACAAACGTAGAGCCTCTCCG 59.473 55.000 5.05 5.05 0.00 4.63
3061 3320 5.995897 ACAAAATTACAAACGTAGAGCCTCT 59.004 36.000 0.00 0.00 0.00 3.69
3062 3321 6.237313 ACAAAATTACAAACGTAGAGCCTC 57.763 37.500 0.00 0.00 0.00 4.70
3063 3322 6.261381 TCAACAAAATTACAAACGTAGAGCCT 59.739 34.615 0.00 0.00 0.00 4.58
3114 3373 1.438651 TACATGAGAAACACAGCGCC 58.561 50.000 2.29 0.00 0.00 6.53
3123 3382 9.814899 TGCTCAAAAAGAAAATTACATGAGAAA 57.185 25.926 0.00 0.00 36.11 2.52
3188 3447 9.347240 CCCTGACTTTATTCTTCATCATTATGT 57.653 33.333 0.00 0.00 34.50 2.29
3189 3448 9.565090 TCCCTGACTTTATTCTTCATCATTATG 57.435 33.333 0.00 0.00 0.00 1.90
3191 3450 9.565090 CATCCCTGACTTTATTCTTCATCATTA 57.435 33.333 0.00 0.00 0.00 1.90
3192 3451 8.277197 TCATCCCTGACTTTATTCTTCATCATT 58.723 33.333 0.00 0.00 0.00 2.57
3193 3452 7.718753 GTCATCCCTGACTTTATTCTTCATCAT 59.281 37.037 0.00 0.00 46.84 2.45
3194 3453 7.050377 GTCATCCCTGACTTTATTCTTCATCA 58.950 38.462 0.00 0.00 46.84 3.07
3195 3454 7.489574 GTCATCCCTGACTTTATTCTTCATC 57.510 40.000 0.00 0.00 46.84 2.92
3213 3472 2.134789 AGCATGGGAAACTGTCATCC 57.865 50.000 0.00 4.46 34.85 3.51
3214 3473 3.084039 TGAAGCATGGGAAACTGTCATC 58.916 45.455 0.00 0.00 0.00 2.92
3215 3474 3.087031 CTGAAGCATGGGAAACTGTCAT 58.913 45.455 0.00 0.00 0.00 3.06
3216 3475 2.106338 TCTGAAGCATGGGAAACTGTCA 59.894 45.455 0.00 0.00 0.00 3.58
3217 3476 2.485814 GTCTGAAGCATGGGAAACTGTC 59.514 50.000 0.00 0.00 0.00 3.51
3218 3477 2.107204 AGTCTGAAGCATGGGAAACTGT 59.893 45.455 0.00 0.00 0.00 3.55
3219 3478 2.787994 AGTCTGAAGCATGGGAAACTG 58.212 47.619 0.00 0.00 0.00 3.16
3220 3479 3.152341 CAAGTCTGAAGCATGGGAAACT 58.848 45.455 0.00 0.00 0.00 2.66
3221 3480 2.352127 GCAAGTCTGAAGCATGGGAAAC 60.352 50.000 0.00 0.00 0.00 2.78
3222 3481 1.888512 GCAAGTCTGAAGCATGGGAAA 59.111 47.619 0.00 0.00 0.00 3.13
3223 3482 1.538047 GCAAGTCTGAAGCATGGGAA 58.462 50.000 0.00 0.00 0.00 3.97
3224 3483 0.322816 GGCAAGTCTGAAGCATGGGA 60.323 55.000 0.00 0.00 0.00 4.37
3225 3484 0.609957 TGGCAAGTCTGAAGCATGGG 60.610 55.000 0.00 0.00 0.00 4.00
3226 3485 0.809385 CTGGCAAGTCTGAAGCATGG 59.191 55.000 0.00 0.00 0.00 3.66
3227 3486 1.817357 TCTGGCAAGTCTGAAGCATG 58.183 50.000 0.00 0.00 0.00 4.06
3228 3487 2.157738 GTTCTGGCAAGTCTGAAGCAT 58.842 47.619 0.00 0.00 0.00 3.79
3229 3488 1.141657 AGTTCTGGCAAGTCTGAAGCA 59.858 47.619 0.00 0.00 0.00 3.91
3230 3489 1.889545 AGTTCTGGCAAGTCTGAAGC 58.110 50.000 0.00 0.00 0.00 3.86
3231 3490 6.166279 TGTATTAGTTCTGGCAAGTCTGAAG 58.834 40.000 0.00 0.00 0.00 3.02
3232 3491 6.109156 TGTATTAGTTCTGGCAAGTCTGAA 57.891 37.500 0.00 0.00 0.00 3.02
3233 3492 5.738619 TGTATTAGTTCTGGCAAGTCTGA 57.261 39.130 0.00 0.00 0.00 3.27
3234 3493 5.163953 CGTTGTATTAGTTCTGGCAAGTCTG 60.164 44.000 0.00 0.00 0.00 3.51
3235 3494 4.929808 CGTTGTATTAGTTCTGGCAAGTCT 59.070 41.667 0.00 0.00 0.00 3.24
3236 3495 4.689345 ACGTTGTATTAGTTCTGGCAAGTC 59.311 41.667 0.00 0.00 0.00 3.01
3237 3496 4.638304 ACGTTGTATTAGTTCTGGCAAGT 58.362 39.130 0.00 0.00 0.00 3.16
3238 3497 5.607119 AACGTTGTATTAGTTCTGGCAAG 57.393 39.130 0.00 0.00 0.00 4.01
3239 3498 5.761234 AGAAACGTTGTATTAGTTCTGGCAA 59.239 36.000 0.00 0.00 0.00 4.52
3240 3499 5.302360 AGAAACGTTGTATTAGTTCTGGCA 58.698 37.500 0.00 0.00 0.00 4.92
3241 3500 5.407387 TGAGAAACGTTGTATTAGTTCTGGC 59.593 40.000 0.00 0.00 0.00 4.85
3242 3501 7.117812 ACATGAGAAACGTTGTATTAGTTCTGG 59.882 37.037 0.00 0.00 0.00 3.86
3243 3502 8.018677 ACATGAGAAACGTTGTATTAGTTCTG 57.981 34.615 0.00 0.00 0.00 3.02
3244 3503 9.701098 TTACATGAGAAACGTTGTATTAGTTCT 57.299 29.630 0.00 0.00 0.00 3.01
3255 3514 9.458374 CCAAACTAAAATTACATGAGAAACGTT 57.542 29.630 0.00 0.00 0.00 3.99
3256 3515 8.842280 TCCAAACTAAAATTACATGAGAAACGT 58.158 29.630 0.00 0.00 0.00 3.99
3257 3516 9.672086 TTCCAAACTAAAATTACATGAGAAACG 57.328 29.630 0.00 0.00 0.00 3.60
3270 3529 9.492973 CCAGAATTTCACATTCCAAACTAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
3271 3530 8.700051 TCCAGAATTTCACATTCCAAACTAAAA 58.300 29.630 0.00 0.00 0.00 1.52
3272 3531 8.243961 TCCAGAATTTCACATTCCAAACTAAA 57.756 30.769 0.00 0.00 0.00 1.85
3273 3532 7.831691 TCCAGAATTTCACATTCCAAACTAA 57.168 32.000 0.00 0.00 0.00 2.24
3274 3533 7.523709 GCTTCCAGAATTTCACATTCCAAACTA 60.524 37.037 0.00 0.00 0.00 2.24
3332 3591 0.734597 GCAACGGGTAATTTTGGCCG 60.735 55.000 0.00 0.00 0.00 6.13
3385 3644 3.854666 TCATTTCTCTTCAGAGCCGAAG 58.145 45.455 0.00 2.49 43.17 3.79
3394 3653 4.717877 TGTCCAAGCTTCATTTCTCTTCA 58.282 39.130 0.00 0.00 0.00 3.02
3411 3670 1.526686 CTGTGCAGTGGCTTGTCCA 60.527 57.895 0.00 0.00 44.18 4.02
3412 3671 2.912624 GCTGTGCAGTGGCTTGTCC 61.913 63.158 0.00 0.00 41.91 4.02
3413 3672 2.188829 TGCTGTGCAGTGGCTTGTC 61.189 57.895 0.00 0.00 41.91 3.18
3446 3705 4.918201 CGCCATCGCCTCCTTCCC 62.918 72.222 0.00 0.00 0.00 3.97
3643 3905 1.801913 CTGGAAGAACTCGGCGTCG 60.802 63.158 1.15 1.15 34.07 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.