Multiple sequence alignment - TraesCS3B01G147800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G147800 chr3B 100.000 2492 0 0 1 2492 139196944 139194453 0.000000e+00 4602
1 TraesCS3B01G147800 chr3B 86.731 1138 129 13 381 1500 139038909 139037776 0.000000e+00 1245
2 TraesCS3B01G147800 chr3B 89.496 238 25 0 1735 1972 139194896 139194659 4.030000e-78 302
3 TraesCS3B01G147800 chr3B 89.496 238 25 0 2049 2286 139195210 139194973 4.030000e-78 302
4 TraesCS3B01G147800 chr3B 85.616 146 19 2 1 145 792705272 792705128 4.290000e-33 152
5 TraesCS3B01G147800 chr3A 94.305 1598 74 9 147 1729 106398566 106396971 0.000000e+00 2431
6 TraesCS3B01G147800 chr3A 87.893 413 28 12 1969 2364 106397008 106396601 1.350000e-127 466
7 TraesCS3B01G147800 chr3A 94.737 171 9 0 1330 1500 106309127 106308957 1.470000e-67 267
8 TraesCS3B01G147800 chr3A 90.270 185 16 1 1777 1961 106396871 106396689 8.910000e-60 241
9 TraesCS3B01G147800 chr3A 95.522 67 1 1 2422 2488 106396262 106396198 3.390000e-19 106
10 TraesCS3B01G147800 chr3D 93.599 1609 49 13 175 1729 89639443 89637835 0.000000e+00 2351
11 TraesCS3B01G147800 chr3D 91.220 820 64 7 730 1543 89628282 89627465 0.000000e+00 1109
12 TraesCS3B01G147800 chr3D 88.735 648 62 11 723 1366 89547597 89546957 0.000000e+00 782
13 TraesCS3B01G147800 chr3D 91.412 524 42 2 1969 2492 89637872 89637352 0.000000e+00 715
14 TraesCS3B01G147800 chr3D 92.308 312 21 3 1969 2277 89627260 89626949 8.180000e-120 440
15 TraesCS3B01G147800 chr3D 92.982 228 10 5 2258 2485 89626931 89626710 6.650000e-86 327
16 TraesCS3B01G147800 chr3D 92.857 168 8 1 1566 1729 89627390 89627223 8.910000e-60 241
17 TraesCS3B01G147800 chr3D 93.151 146 10 0 1355 1500 89546410 89546265 5.400000e-52 215
18 TraesCS3B01G147800 chr3D 86.207 145 18 2 1 145 553243359 553243217 3.320000e-34 156
19 TraesCS3B01G147800 chr3D 82.171 129 20 2 377 503 89553828 89553701 9.420000e-20 108
20 TraesCS3B01G147800 chr4A 76.551 661 143 9 816 1470 696600891 696600237 3.940000e-93 351
21 TraesCS3B01G147800 chr4A 75.862 638 142 10 839 1470 697573822 697574453 5.170000e-82 315
22 TraesCS3B01G147800 chr4A 77.961 363 73 6 776 1133 697503321 697503681 1.160000e-53 220
23 TraesCS3B01G147800 chr4B 87.162 148 15 2 1 144 636620114 636620261 5.510000e-37 165
24 TraesCS3B01G147800 chr4B 87.500 112 13 1 13 123 551698395 551698284 7.230000e-26 128
25 TraesCS3B01G147800 chr5B 84.138 145 21 2 1 143 543248000 543248144 3.340000e-29 139
26 TraesCS3B01G147800 chr1D 85.606 132 19 0 14 145 415524280 415524149 3.340000e-29 139
27 TraesCS3B01G147800 chr5D 85.496 131 19 0 13 143 118825744 118825614 1.200000e-28 137
28 TraesCS3B01G147800 chr6D 82.313 147 23 3 1 145 55901980 55901835 9.360000e-25 124
29 TraesCS3B01G147800 chr6D 82.069 145 23 3 1 143 19733523 19733380 1.210000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G147800 chr3B 139194453 139196944 2491 True 1735.333333 4602 92.997333 1 2492 3 chr3B.!!$R3 2491
1 TraesCS3B01G147800 chr3B 139037776 139038909 1133 True 1245.000000 1245 86.731000 381 1500 1 chr3B.!!$R1 1119
2 TraesCS3B01G147800 chr3A 106396198 106398566 2368 True 811.000000 2431 91.997500 147 2488 4 chr3A.!!$R2 2341
3 TraesCS3B01G147800 chr3D 89637352 89639443 2091 True 1533.000000 2351 92.505500 175 2492 2 chr3D.!!$R5 2317
4 TraesCS3B01G147800 chr3D 89626710 89628282 1572 True 529.250000 1109 92.341750 730 2485 4 chr3D.!!$R4 1755
5 TraesCS3B01G147800 chr3D 89546265 89547597 1332 True 498.500000 782 90.943000 723 1500 2 chr3D.!!$R3 777
6 TraesCS3B01G147800 chr4A 696600237 696600891 654 True 351.000000 351 76.551000 816 1470 1 chr4A.!!$R1 654
7 TraesCS3B01G147800 chr4A 697573822 697574453 631 False 315.000000 315 75.862000 839 1470 1 chr4A.!!$F2 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.035739 GGCAGACCCTTTAACGACCA 59.964 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2581 0.387565 GTGCAACCGGGTGAAAATGT 59.612 50.0 27.49 0.0 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.468095 AAAAGAGACGTGTGTGCATTAC 57.532 40.909 0.00 0.00 0.00 1.89
39 40 3.386768 AAGAGACGTGTGTGCATTACT 57.613 42.857 0.00 0.00 0.00 2.24
40 41 3.386768 AGAGACGTGTGTGCATTACTT 57.613 42.857 0.00 0.00 0.00 2.24
41 42 3.059884 AGAGACGTGTGTGCATTACTTG 58.940 45.455 0.00 0.00 0.00 3.16
42 43 2.800544 GAGACGTGTGTGCATTACTTGT 59.199 45.455 0.00 0.00 0.00 3.16
43 44 3.202906 AGACGTGTGTGCATTACTTGTT 58.797 40.909 0.00 0.00 0.00 2.83
44 45 3.625764 AGACGTGTGTGCATTACTTGTTT 59.374 39.130 0.00 0.00 0.00 2.83
45 46 4.095782 AGACGTGTGTGCATTACTTGTTTT 59.904 37.500 0.00 0.00 0.00 2.43
46 47 4.101942 ACGTGTGTGCATTACTTGTTTTG 58.898 39.130 0.00 0.00 0.00 2.44
47 48 3.061271 CGTGTGTGCATTACTTGTTTTGC 60.061 43.478 0.00 0.00 35.67 3.68
48 49 3.245048 GTGTGTGCATTACTTGTTTTGCC 59.755 43.478 0.00 0.00 34.20 4.52
49 50 2.799978 GTGTGCATTACTTGTTTTGCCC 59.200 45.455 0.00 0.00 34.20 5.36
50 51 2.432146 TGTGCATTACTTGTTTTGCCCA 59.568 40.909 0.00 0.00 34.20 5.36
51 52 3.070734 TGTGCATTACTTGTTTTGCCCAT 59.929 39.130 0.00 0.00 34.20 4.00
52 53 4.281941 TGTGCATTACTTGTTTTGCCCATA 59.718 37.500 0.00 0.00 34.20 2.74
53 54 4.625311 GTGCATTACTTGTTTTGCCCATAC 59.375 41.667 0.00 0.00 34.20 2.39
54 55 4.281941 TGCATTACTTGTTTTGCCCATACA 59.718 37.500 0.00 0.00 34.20 2.29
55 56 5.046735 TGCATTACTTGTTTTGCCCATACAT 60.047 36.000 0.00 0.00 34.20 2.29
56 57 6.153510 TGCATTACTTGTTTTGCCCATACATA 59.846 34.615 0.00 0.00 34.20 2.29
57 58 6.697019 GCATTACTTGTTTTGCCCATACATAG 59.303 38.462 0.00 0.00 0.00 2.23
58 59 7.416213 GCATTACTTGTTTTGCCCATACATAGA 60.416 37.037 0.00 0.00 0.00 1.98
59 60 5.897377 ACTTGTTTTGCCCATACATAGAC 57.103 39.130 0.00 0.00 0.00 2.59
60 61 4.394920 ACTTGTTTTGCCCATACATAGACG 59.605 41.667 0.00 0.00 0.00 4.18
61 62 3.945346 TGTTTTGCCCATACATAGACGT 58.055 40.909 0.00 0.00 0.00 4.34
62 63 3.687212 TGTTTTGCCCATACATAGACGTG 59.313 43.478 0.00 0.00 0.00 4.49
63 64 3.620427 TTTGCCCATACATAGACGTGT 57.380 42.857 0.00 0.00 36.13 4.49
64 65 2.595124 TGCCCATACATAGACGTGTG 57.405 50.000 0.00 0.00 33.62 3.82
65 66 1.138069 TGCCCATACATAGACGTGTGG 59.862 52.381 0.00 0.00 45.15 4.17
67 68 1.865865 CCATACATAGACGTGTGGGC 58.134 55.000 0.00 0.00 42.68 5.36
68 69 1.412710 CCATACATAGACGTGTGGGCT 59.587 52.381 0.00 0.00 42.68 5.19
69 70 2.473816 CATACATAGACGTGTGGGCTG 58.526 52.381 0.00 0.00 33.62 4.85
70 71 1.842052 TACATAGACGTGTGGGCTGA 58.158 50.000 0.00 0.00 33.62 4.26
71 72 1.195115 ACATAGACGTGTGGGCTGAT 58.805 50.000 0.00 0.00 0.00 2.90
72 73 1.137086 ACATAGACGTGTGGGCTGATC 59.863 52.381 0.00 0.00 0.00 2.92
73 74 0.753262 ATAGACGTGTGGGCTGATCC 59.247 55.000 0.00 0.00 0.00 3.36
74 75 0.324368 TAGACGTGTGGGCTGATCCT 60.324 55.000 0.00 0.00 34.39 3.24
75 76 1.194781 AGACGTGTGGGCTGATCCTT 61.195 55.000 0.00 0.00 34.39 3.36
76 77 0.321653 GACGTGTGGGCTGATCCTTT 60.322 55.000 0.00 0.00 34.39 3.11
77 78 0.606401 ACGTGTGGGCTGATCCTTTG 60.606 55.000 0.00 0.00 34.39 2.77
78 79 0.321564 CGTGTGGGCTGATCCTTTGA 60.322 55.000 0.00 0.00 34.39 2.69
79 80 1.881925 CGTGTGGGCTGATCCTTTGAA 60.882 52.381 0.00 0.00 34.39 2.69
80 81 2.238521 GTGTGGGCTGATCCTTTGAAA 58.761 47.619 0.00 0.00 34.39 2.69
81 82 2.029918 GTGTGGGCTGATCCTTTGAAAC 60.030 50.000 0.00 0.00 34.39 2.78
82 83 2.238521 GTGGGCTGATCCTTTGAAACA 58.761 47.619 0.00 0.00 34.39 2.83
83 84 2.029918 GTGGGCTGATCCTTTGAAACAC 60.030 50.000 0.00 0.00 34.39 3.32
84 85 1.546029 GGGCTGATCCTTTGAAACACC 59.454 52.381 0.00 0.00 34.39 4.16
85 86 2.238521 GGCTGATCCTTTGAAACACCA 58.761 47.619 0.00 0.00 0.00 4.17
86 87 2.029918 GGCTGATCCTTTGAAACACCAC 60.030 50.000 0.00 0.00 0.00 4.16
87 88 2.622942 GCTGATCCTTTGAAACACCACA 59.377 45.455 0.00 0.00 0.00 4.17
88 89 3.550842 GCTGATCCTTTGAAACACCACAC 60.551 47.826 0.00 0.00 0.00 3.82
89 90 3.625853 TGATCCTTTGAAACACCACACA 58.374 40.909 0.00 0.00 0.00 3.72
90 91 4.019858 TGATCCTTTGAAACACCACACAA 58.980 39.130 0.00 0.00 0.00 3.33
91 92 4.464244 TGATCCTTTGAAACACCACACAAA 59.536 37.500 0.00 0.00 0.00 2.83
92 93 4.873746 TCCTTTGAAACACCACACAAAA 57.126 36.364 0.00 0.00 33.05 2.44
93 94 5.413309 TCCTTTGAAACACCACACAAAAT 57.587 34.783 0.00 0.00 33.05 1.82
94 95 6.531503 TCCTTTGAAACACCACACAAAATA 57.468 33.333 0.00 0.00 33.05 1.40
95 96 7.118496 TCCTTTGAAACACCACACAAAATAT 57.882 32.000 0.00 0.00 33.05 1.28
96 97 6.983307 TCCTTTGAAACACCACACAAAATATG 59.017 34.615 0.00 0.00 33.05 1.78
97 98 6.760770 CCTTTGAAACACCACACAAAATATGT 59.239 34.615 0.00 0.00 45.34 2.29
117 118 2.850439 GGCAGACCCTTTAACGACC 58.150 57.895 0.00 0.00 0.00 4.79
118 119 0.035739 GGCAGACCCTTTAACGACCA 59.964 55.000 0.00 0.00 0.00 4.02
119 120 1.154197 GCAGACCCTTTAACGACCAC 58.846 55.000 0.00 0.00 0.00 4.16
120 121 1.541670 GCAGACCCTTTAACGACCACA 60.542 52.381 0.00 0.00 0.00 4.17
121 122 2.140717 CAGACCCTTTAACGACCACAC 58.859 52.381 0.00 0.00 0.00 3.82
122 123 1.142474 GACCCTTTAACGACCACACG 58.858 55.000 0.00 0.00 39.31 4.49
123 124 0.249996 ACCCTTTAACGACCACACGG 60.250 55.000 0.00 0.00 37.61 4.94
124 125 0.952010 CCCTTTAACGACCACACGGG 60.952 60.000 0.00 0.00 44.81 5.28
136 137 4.195308 CACGGGTGGGTGTTATCG 57.805 61.111 0.00 0.00 33.24 2.92
137 138 1.448893 CACGGGTGGGTGTTATCGG 60.449 63.158 0.00 0.00 33.24 4.18
138 139 2.512974 CGGGTGGGTGTTATCGGC 60.513 66.667 0.00 0.00 0.00 5.54
139 140 2.512974 GGGTGGGTGTTATCGGCG 60.513 66.667 0.00 0.00 0.00 6.46
140 141 2.266689 GGTGGGTGTTATCGGCGT 59.733 61.111 6.85 0.00 0.00 5.68
141 142 1.812507 GGTGGGTGTTATCGGCGTC 60.813 63.158 6.85 0.00 0.00 5.19
142 143 1.812507 GTGGGTGTTATCGGCGTCC 60.813 63.158 6.85 1.38 0.00 4.79
143 144 1.985662 TGGGTGTTATCGGCGTCCT 60.986 57.895 6.85 0.00 0.00 3.85
144 145 1.219935 GGGTGTTATCGGCGTCCTT 59.780 57.895 6.85 0.00 0.00 3.36
145 146 0.808847 GGGTGTTATCGGCGTCCTTC 60.809 60.000 6.85 0.00 0.00 3.46
157 158 2.582687 GCGTCCTTCGAATATCCGTAG 58.417 52.381 0.00 0.00 42.86 3.51
163 164 3.819337 CCTTCGAATATCCGTAGAGGTCA 59.181 47.826 0.00 0.00 41.99 4.02
178 179 6.309251 CGTAGAGGTCAGTTTTCTCTTTCATC 59.691 42.308 0.00 0.00 38.62 2.92
219 220 3.244630 ACGTAAGGCCCATTGAGTAACAA 60.245 43.478 0.00 0.00 46.39 2.83
286 290 2.959707 GTGTAGAAGAGTCCCGATCCAT 59.040 50.000 0.00 0.00 0.00 3.41
698 742 1.670087 CGCGCTCTCCTTTCTCAAGAA 60.670 52.381 5.56 0.00 30.57 2.52
1224 1274 4.827087 CATCTGCTCGTGGCGGCT 62.827 66.667 11.43 0.00 46.32 5.52
1227 1277 4.827087 CTGCTCGTGGCGGCTGAT 62.827 66.667 11.43 0.00 45.43 2.90
1242 1292 2.484770 GGCTGATAAGTACCGCATGGAA 60.485 50.000 0.00 0.00 39.21 3.53
1368 1976 1.551883 GGTGCATGCTTCCATTTCCTT 59.448 47.619 20.33 0.00 0.00 3.36
1369 1977 2.613691 GTGCATGCTTCCATTTCCTTG 58.386 47.619 20.33 0.00 0.00 3.61
1484 2092 1.361993 GCTCGATCGATGCCTCAGT 59.638 57.895 19.78 0.00 0.00 3.41
1493 2101 3.023832 TCGATGCCTCAGTTCAGTGATA 58.976 45.455 0.00 0.00 0.00 2.15
1644 2334 6.987386 AGACTACATCCTACTATCATTGCAC 58.013 40.000 0.00 0.00 0.00 4.57
1701 2395 6.047870 AGAGCATTGTGAGTTATCAGATGAC 58.952 40.000 0.00 0.00 35.66 3.06
1702 2396 5.737860 AGCATTGTGAGTTATCAGATGACA 58.262 37.500 7.99 0.00 35.66 3.58
1703 2397 6.354938 AGCATTGTGAGTTATCAGATGACAT 58.645 36.000 7.99 0.00 35.66 3.06
1704 2398 6.827251 AGCATTGTGAGTTATCAGATGACATT 59.173 34.615 7.99 0.00 35.66 2.71
1705 2399 6.910972 GCATTGTGAGTTATCAGATGACATTG 59.089 38.462 7.99 0.00 35.66 2.82
1706 2400 6.426980 TTGTGAGTTATCAGATGACATTGC 57.573 37.500 7.99 0.00 35.66 3.56
1707 2401 5.490159 TGTGAGTTATCAGATGACATTGCA 58.510 37.500 7.99 0.00 35.66 4.08
1708 2402 5.583457 TGTGAGTTATCAGATGACATTGCAG 59.417 40.000 7.99 0.00 35.66 4.41
1709 2403 4.573607 TGAGTTATCAGATGACATTGCAGC 59.426 41.667 7.99 0.00 0.00 5.25
1710 2404 4.778579 AGTTATCAGATGACATTGCAGCT 58.221 39.130 7.99 0.00 34.31 4.24
1711 2405 4.815308 AGTTATCAGATGACATTGCAGCTC 59.185 41.667 7.99 0.00 31.05 4.09
1712 2406 2.773993 TCAGATGACATTGCAGCTCA 57.226 45.000 0.00 0.00 31.05 4.26
1713 2407 3.062122 TCAGATGACATTGCAGCTCAA 57.938 42.857 0.00 1.85 39.32 3.02
1714 2408 3.617284 TCAGATGACATTGCAGCTCAAT 58.383 40.909 5.80 5.80 45.82 2.57
1715 2409 3.626217 TCAGATGACATTGCAGCTCAATC 59.374 43.478 8.01 2.13 43.21 2.67
1716 2410 3.628032 CAGATGACATTGCAGCTCAATCT 59.372 43.478 8.01 0.00 43.21 2.40
1717 2411 3.878103 AGATGACATTGCAGCTCAATCTC 59.122 43.478 8.01 7.45 43.21 2.75
1718 2412 2.362736 TGACATTGCAGCTCAATCTCC 58.637 47.619 8.01 3.26 43.21 3.71
1719 2413 2.290450 TGACATTGCAGCTCAATCTCCA 60.290 45.455 8.01 5.12 43.21 3.86
1720 2414 2.950309 GACATTGCAGCTCAATCTCCAT 59.050 45.455 8.01 0.00 43.21 3.41
1721 2415 3.362706 ACATTGCAGCTCAATCTCCATT 58.637 40.909 8.01 0.00 43.21 3.16
1722 2416 3.767673 ACATTGCAGCTCAATCTCCATTT 59.232 39.130 8.01 0.00 43.21 2.32
1723 2417 3.861276 TTGCAGCTCAATCTCCATTTG 57.139 42.857 0.00 0.00 0.00 2.32
1724 2418 2.799017 TGCAGCTCAATCTCCATTTGT 58.201 42.857 0.00 0.00 0.00 2.83
1725 2419 3.159472 TGCAGCTCAATCTCCATTTGTT 58.841 40.909 0.00 0.00 0.00 2.83
1726 2420 3.192001 TGCAGCTCAATCTCCATTTGTTC 59.808 43.478 0.00 0.00 0.00 3.18
1727 2421 3.442977 GCAGCTCAATCTCCATTTGTTCT 59.557 43.478 0.00 0.00 0.00 3.01
1728 2422 4.674623 GCAGCTCAATCTCCATTTGTTCTG 60.675 45.833 0.00 0.00 32.79 3.02
1729 2423 4.458295 CAGCTCAATCTCCATTTGTTCTGT 59.542 41.667 0.00 0.00 0.00 3.41
1730 2424 5.048224 CAGCTCAATCTCCATTTGTTCTGTT 60.048 40.000 0.00 0.00 0.00 3.16
1731 2425 5.182760 AGCTCAATCTCCATTTGTTCTGTTC 59.817 40.000 0.00 0.00 0.00 3.18
1732 2426 5.182760 GCTCAATCTCCATTTGTTCTGTTCT 59.817 40.000 0.00 0.00 0.00 3.01
1733 2427 6.294397 GCTCAATCTCCATTTGTTCTGTTCTT 60.294 38.462 0.00 0.00 0.00 2.52
1734 2428 6.973843 TCAATCTCCATTTGTTCTGTTCTTG 58.026 36.000 0.00 0.00 0.00 3.02
1735 2429 4.836125 TCTCCATTTGTTCTGTTCTTGC 57.164 40.909 0.00 0.00 0.00 4.01
1736 2430 4.464008 TCTCCATTTGTTCTGTTCTTGCT 58.536 39.130 0.00 0.00 0.00 3.91
1737 2431 5.620206 TCTCCATTTGTTCTGTTCTTGCTA 58.380 37.500 0.00 0.00 0.00 3.49
1738 2432 6.061441 TCTCCATTTGTTCTGTTCTTGCTAA 58.939 36.000 0.00 0.00 0.00 3.09
1739 2433 6.017109 TCTCCATTTGTTCTGTTCTTGCTAAC 60.017 38.462 0.00 0.00 0.00 2.34
1740 2434 5.827797 TCCATTTGTTCTGTTCTTGCTAACT 59.172 36.000 0.00 0.00 0.00 2.24
1741 2435 6.017109 TCCATTTGTTCTGTTCTTGCTAACTC 60.017 38.462 0.00 0.00 0.00 3.01
1742 2436 6.238731 CCATTTGTTCTGTTCTTGCTAACTCA 60.239 38.462 0.00 0.00 0.00 3.41
1743 2437 6.942532 TTTGTTCTGTTCTTGCTAACTCAT 57.057 33.333 0.00 0.00 0.00 2.90
1744 2438 6.942532 TTGTTCTGTTCTTGCTAACTCATT 57.057 33.333 0.00 0.00 0.00 2.57
1745 2439 6.304356 TGTTCTGTTCTTGCTAACTCATTG 57.696 37.500 0.00 0.00 0.00 2.82
1746 2440 5.822519 TGTTCTGTTCTTGCTAACTCATTGT 59.177 36.000 0.00 0.00 0.00 2.71
1747 2441 5.929697 TCTGTTCTTGCTAACTCATTGTG 57.070 39.130 0.00 0.00 0.00 3.33
1748 2442 5.368145 TCTGTTCTTGCTAACTCATTGTGT 58.632 37.500 0.00 0.00 0.00 3.72
1749 2443 5.822519 TCTGTTCTTGCTAACTCATTGTGTT 59.177 36.000 8.92 8.92 0.00 3.32
1750 2444 6.017934 TCTGTTCTTGCTAACTCATTGTGTTC 60.018 38.462 7.34 0.00 0.00 3.18
1751 2445 5.822519 TGTTCTTGCTAACTCATTGTGTTCT 59.177 36.000 7.34 0.00 0.00 3.01
1752 2446 6.017934 TGTTCTTGCTAACTCATTGTGTTCTC 60.018 38.462 7.34 2.72 0.00 2.87
1753 2447 4.997395 TCTTGCTAACTCATTGTGTTCTCC 59.003 41.667 7.34 0.00 0.00 3.71
1754 2448 4.623932 TGCTAACTCATTGTGTTCTCCT 57.376 40.909 7.34 0.00 0.00 3.69
1755 2449 4.569943 TGCTAACTCATTGTGTTCTCCTC 58.430 43.478 7.34 0.00 0.00 3.71
1756 2450 4.284490 TGCTAACTCATTGTGTTCTCCTCT 59.716 41.667 7.34 0.00 0.00 3.69
1757 2451 5.480422 TGCTAACTCATTGTGTTCTCCTCTA 59.520 40.000 7.34 0.00 0.00 2.43
1758 2452 6.014584 TGCTAACTCATTGTGTTCTCCTCTAA 60.015 38.462 7.34 0.00 0.00 2.10
1759 2453 7.044798 GCTAACTCATTGTGTTCTCCTCTAAT 58.955 38.462 7.34 0.00 0.00 1.73
1760 2454 8.198109 GCTAACTCATTGTGTTCTCCTCTAATA 58.802 37.037 7.34 0.00 0.00 0.98
1763 2457 9.965902 AACTCATTGTGTTCTCCTCTAATAAAT 57.034 29.630 0.00 0.00 0.00 1.40
1770 2464 9.582431 TGTGTTCTCCTCTAATAAATAGTTTCG 57.418 33.333 0.00 0.00 33.08 3.46
1771 2465 9.032420 GTGTTCTCCTCTAATAAATAGTTTCGG 57.968 37.037 0.00 0.00 33.08 4.30
1772 2466 8.202137 TGTTCTCCTCTAATAAATAGTTTCGGG 58.798 37.037 0.00 0.00 33.08 5.14
1773 2467 7.299246 TCTCCTCTAATAAATAGTTTCGGGG 57.701 40.000 0.00 0.00 33.08 5.73
1774 2468 7.071273 TCTCCTCTAATAAATAGTTTCGGGGA 58.929 38.462 0.00 0.00 33.08 4.81
1775 2469 7.566138 TCTCCTCTAATAAATAGTTTCGGGGAA 59.434 37.037 0.00 0.00 33.08 3.97
1776 2470 8.093118 TCCTCTAATAAATAGTTTCGGGGAAA 57.907 34.615 0.00 0.00 33.08 3.13
1777 2471 8.720537 TCCTCTAATAAATAGTTTCGGGGAAAT 58.279 33.333 0.00 0.00 33.97 2.17
1783 2477 8.810990 ATAAATAGTTTCGGGGAAATAACACA 57.189 30.769 0.00 0.00 33.97 3.72
1784 2478 7.712204 AAATAGTTTCGGGGAAATAACACAT 57.288 32.000 0.00 0.00 33.97 3.21
1785 2479 6.693315 ATAGTTTCGGGGAAATAACACATG 57.307 37.500 0.00 0.00 33.97 3.21
1786 2480 4.658063 AGTTTCGGGGAAATAACACATGA 58.342 39.130 0.00 0.00 33.97 3.07
1787 2481 5.074115 AGTTTCGGGGAAATAACACATGAA 58.926 37.500 0.00 0.00 33.97 2.57
1788 2482 5.714806 AGTTTCGGGGAAATAACACATGAAT 59.285 36.000 0.00 0.00 33.97 2.57
1789 2483 5.828299 TTCGGGGAAATAACACATGAATC 57.172 39.130 0.00 0.00 0.00 2.52
1790 2484 5.110814 TCGGGGAAATAACACATGAATCT 57.889 39.130 0.00 0.00 0.00 2.40
1791 2485 5.505780 TCGGGGAAATAACACATGAATCTT 58.494 37.500 0.00 0.00 0.00 2.40
1792 2486 5.949354 TCGGGGAAATAACACATGAATCTTT 59.051 36.000 0.00 0.00 0.00 2.52
1793 2487 6.094881 TCGGGGAAATAACACATGAATCTTTC 59.905 38.462 0.00 2.22 0.00 2.62
1794 2488 6.573434 GGGGAAATAACACATGAATCTTTCC 58.427 40.000 0.00 10.66 39.46 3.13
1795 2489 6.381133 GGGGAAATAACACATGAATCTTTCCT 59.619 38.462 20.21 0.00 39.87 3.36
1796 2490 7.093333 GGGGAAATAACACATGAATCTTTCCTT 60.093 37.037 20.21 0.00 39.87 3.36
1797 2491 7.976175 GGGAAATAACACATGAATCTTTCCTTC 59.024 37.037 20.21 9.55 39.87 3.46
1798 2492 8.522830 GGAAATAACACATGAATCTTTCCTTCA 58.477 33.333 16.79 0.00 37.97 3.02
1808 2502 8.655935 ATGAATCTTTCCTTCATGGTTTTACT 57.344 30.769 0.00 0.00 40.81 2.24
1809 2503 9.753674 ATGAATCTTTCCTTCATGGTTTTACTA 57.246 29.630 0.00 0.00 40.81 1.82
1810 2504 9.581289 TGAATCTTTCCTTCATGGTTTTACTAA 57.419 29.630 0.00 0.00 37.07 2.24
1813 2507 8.575649 TCTTTCCTTCATGGTTTTACTAATCC 57.424 34.615 0.00 0.00 37.07 3.01
1814 2508 8.167392 TCTTTCCTTCATGGTTTTACTAATCCA 58.833 33.333 0.00 0.00 37.49 3.41
1815 2509 8.713708 TTTCCTTCATGGTTTTACTAATCCAA 57.286 30.769 0.00 0.00 36.85 3.53
1816 2510 7.938140 TCCTTCATGGTTTTACTAATCCAAG 57.062 36.000 0.00 0.00 36.85 3.61
1817 2511 7.466804 TCCTTCATGGTTTTACTAATCCAAGT 58.533 34.615 0.00 0.00 36.85 3.16
1818 2512 7.610305 TCCTTCATGGTTTTACTAATCCAAGTC 59.390 37.037 0.00 0.00 36.85 3.01
1819 2513 6.978343 TCATGGTTTTACTAATCCAAGTCG 57.022 37.500 0.00 0.00 36.85 4.18
1820 2514 5.353123 TCATGGTTTTACTAATCCAAGTCGC 59.647 40.000 0.00 0.00 36.85 5.19
1821 2515 4.004982 TGGTTTTACTAATCCAAGTCGCC 58.995 43.478 0.00 0.00 31.67 5.54
1822 2516 4.259356 GGTTTTACTAATCCAAGTCGCCT 58.741 43.478 0.00 0.00 0.00 5.52
1823 2517 4.094442 GGTTTTACTAATCCAAGTCGCCTG 59.906 45.833 0.00 0.00 0.00 4.85
1824 2518 2.596904 TACTAATCCAAGTCGCCTGC 57.403 50.000 0.00 0.00 0.00 4.85
1825 2519 0.905357 ACTAATCCAAGTCGCCTGCT 59.095 50.000 0.00 0.00 0.00 4.24
1826 2520 2.108168 ACTAATCCAAGTCGCCTGCTA 58.892 47.619 0.00 0.00 0.00 3.49
1827 2521 2.700897 ACTAATCCAAGTCGCCTGCTAT 59.299 45.455 0.00 0.00 0.00 2.97
1828 2522 2.717639 AATCCAAGTCGCCTGCTATT 57.282 45.000 0.00 0.00 0.00 1.73
1829 2523 2.717639 ATCCAAGTCGCCTGCTATTT 57.282 45.000 0.00 0.00 0.00 1.40
1830 2524 2.489938 TCCAAGTCGCCTGCTATTTT 57.510 45.000 0.00 0.00 0.00 1.82
1831 2525 2.356135 TCCAAGTCGCCTGCTATTTTC 58.644 47.619 0.00 0.00 0.00 2.29
1832 2526 2.027192 TCCAAGTCGCCTGCTATTTTCT 60.027 45.455 0.00 0.00 0.00 2.52
1833 2527 2.749621 CCAAGTCGCCTGCTATTTTCTT 59.250 45.455 0.00 0.00 0.00 2.52
1834 2528 3.191371 CCAAGTCGCCTGCTATTTTCTTT 59.809 43.478 0.00 0.00 0.00 2.52
1835 2529 4.321230 CCAAGTCGCCTGCTATTTTCTTTT 60.321 41.667 0.00 0.00 0.00 2.27
1836 2530 4.425577 AGTCGCCTGCTATTTTCTTTTG 57.574 40.909 0.00 0.00 0.00 2.44
1837 2531 3.821033 AGTCGCCTGCTATTTTCTTTTGT 59.179 39.130 0.00 0.00 0.00 2.83
1838 2532 4.083271 AGTCGCCTGCTATTTTCTTTTGTC 60.083 41.667 0.00 0.00 0.00 3.18
1839 2533 3.190535 TCGCCTGCTATTTTCTTTTGTCC 59.809 43.478 0.00 0.00 0.00 4.02
1840 2534 3.057596 CGCCTGCTATTTTCTTTTGTCCA 60.058 43.478 0.00 0.00 0.00 4.02
1841 2535 4.558496 CGCCTGCTATTTTCTTTTGTCCAA 60.558 41.667 0.00 0.00 0.00 3.53
1842 2536 4.925646 GCCTGCTATTTTCTTTTGTCCAAG 59.074 41.667 0.00 0.00 0.00 3.61
1843 2537 5.509670 GCCTGCTATTTTCTTTTGTCCAAGT 60.510 40.000 0.00 0.00 0.00 3.16
1844 2538 6.152379 CCTGCTATTTTCTTTTGTCCAAGTC 58.848 40.000 0.00 0.00 0.00 3.01
1845 2539 6.239008 CCTGCTATTTTCTTTTGTCCAAGTCA 60.239 38.462 0.00 0.00 0.00 3.41
1846 2540 7.106439 TGCTATTTTCTTTTGTCCAAGTCAA 57.894 32.000 0.00 0.00 0.00 3.18
1847 2541 7.725251 TGCTATTTTCTTTTGTCCAAGTCAAT 58.275 30.769 0.00 0.00 0.00 2.57
1848 2542 8.855110 TGCTATTTTCTTTTGTCCAAGTCAATA 58.145 29.630 0.00 0.00 0.00 1.90
1849 2543 9.860898 GCTATTTTCTTTTGTCCAAGTCAATAT 57.139 29.630 0.00 0.00 0.00 1.28
1858 2552 8.885494 TTTGTCCAAGTCAATATTTGAAAAGG 57.115 30.769 0.00 0.00 42.15 3.11
1859 2553 6.991938 TGTCCAAGTCAATATTTGAAAAGGG 58.008 36.000 0.00 0.00 42.15 3.95
1860 2554 6.553100 TGTCCAAGTCAATATTTGAAAAGGGT 59.447 34.615 0.00 0.00 42.15 4.34
1861 2555 6.868339 GTCCAAGTCAATATTTGAAAAGGGTG 59.132 38.462 0.00 0.00 42.15 4.61
1862 2556 6.780031 TCCAAGTCAATATTTGAAAAGGGTGA 59.220 34.615 0.00 0.00 42.15 4.02
1863 2557 6.868339 CCAAGTCAATATTTGAAAAGGGTGAC 59.132 38.462 6.39 6.39 42.15 3.67
1878 2572 3.498927 GGTGACCTCAATTTGCTGATG 57.501 47.619 0.00 0.00 0.00 3.07
1879 2573 2.416431 GGTGACCTCAATTTGCTGATGC 60.416 50.000 0.00 0.00 40.20 3.91
1895 2589 7.098074 TGCTGATGCACATATAACATTTTCA 57.902 32.000 0.00 0.00 45.31 2.69
1896 2590 6.974048 TGCTGATGCACATATAACATTTTCAC 59.026 34.615 0.00 0.00 45.31 3.18
1897 2591 6.418819 GCTGATGCACATATAACATTTTCACC 59.581 38.462 0.00 0.00 39.41 4.02
1898 2592 6.804677 TGATGCACATATAACATTTTCACCC 58.195 36.000 0.00 0.00 0.00 4.61
1899 2593 5.242069 TGCACATATAACATTTTCACCCG 57.758 39.130 0.00 0.00 0.00 5.28
1900 2594 4.097135 TGCACATATAACATTTTCACCCGG 59.903 41.667 0.00 0.00 0.00 5.73
1901 2595 4.097286 GCACATATAACATTTTCACCCGGT 59.903 41.667 0.00 0.00 0.00 5.28
1902 2596 5.393678 GCACATATAACATTTTCACCCGGTT 60.394 40.000 0.00 0.00 0.00 4.44
1903 2597 6.033341 CACATATAACATTTTCACCCGGTTG 58.967 40.000 0.00 0.00 0.00 3.77
1904 2598 3.586100 ATAACATTTTCACCCGGTTGC 57.414 42.857 0.00 0.00 0.00 4.17
1905 2599 1.115467 AACATTTTCACCCGGTTGCA 58.885 45.000 0.00 0.00 0.00 4.08
1906 2600 0.387565 ACATTTTCACCCGGTTGCAC 59.612 50.000 0.00 0.00 0.00 4.57
1907 2601 0.673437 CATTTTCACCCGGTTGCACT 59.327 50.000 0.00 0.00 0.00 4.40
1908 2602 1.068434 CATTTTCACCCGGTTGCACTT 59.932 47.619 0.00 0.00 0.00 3.16
1909 2603 1.187087 TTTTCACCCGGTTGCACTTT 58.813 45.000 0.00 0.00 0.00 2.66
1910 2604 1.187087 TTTCACCCGGTTGCACTTTT 58.813 45.000 0.00 0.00 0.00 2.27
1911 2605 2.054232 TTCACCCGGTTGCACTTTTA 57.946 45.000 0.00 0.00 0.00 1.52
1912 2606 2.054232 TCACCCGGTTGCACTTTTAA 57.946 45.000 0.00 0.00 0.00 1.52
1913 2607 2.588620 TCACCCGGTTGCACTTTTAAT 58.411 42.857 0.00 0.00 0.00 1.40
1914 2608 2.294791 TCACCCGGTTGCACTTTTAATG 59.705 45.455 0.00 0.00 0.00 1.90
1915 2609 1.616374 ACCCGGTTGCACTTTTAATGG 59.384 47.619 0.00 0.00 0.00 3.16
1916 2610 1.889829 CCCGGTTGCACTTTTAATGGA 59.110 47.619 0.00 0.00 0.00 3.41
1917 2611 2.297597 CCCGGTTGCACTTTTAATGGAA 59.702 45.455 0.00 0.00 0.00 3.53
1918 2612 3.574614 CCGGTTGCACTTTTAATGGAAG 58.425 45.455 0.00 0.00 0.00 3.46
1919 2613 3.254657 CCGGTTGCACTTTTAATGGAAGA 59.745 43.478 0.00 0.00 0.00 2.87
1920 2614 4.261825 CCGGTTGCACTTTTAATGGAAGAA 60.262 41.667 0.00 0.00 0.00 2.52
1921 2615 4.679654 CGGTTGCACTTTTAATGGAAGAAC 59.320 41.667 0.00 0.00 0.00 3.01
1922 2616 5.596845 GGTTGCACTTTTAATGGAAGAACA 58.403 37.500 0.00 0.00 0.00 3.18
1923 2617 6.223120 GGTTGCACTTTTAATGGAAGAACAT 58.777 36.000 0.00 0.00 0.00 2.71
1924 2618 6.705825 GGTTGCACTTTTAATGGAAGAACATT 59.294 34.615 0.00 0.00 43.13 2.71
1925 2619 7.870445 GGTTGCACTTTTAATGGAAGAACATTA 59.130 33.333 0.00 0.00 41.12 1.90
1926 2620 9.423061 GTTGCACTTTTAATGGAAGAACATTAT 57.577 29.630 0.00 0.00 41.47 1.28
1927 2621 9.995003 TTGCACTTTTAATGGAAGAACATTATT 57.005 25.926 0.00 0.00 41.47 1.40
1928 2622 9.995003 TGCACTTTTAATGGAAGAACATTATTT 57.005 25.926 0.00 0.00 41.47 1.40
1931 2625 9.942850 ACTTTTAATGGAAGAACATTATTTGGG 57.057 29.630 0.00 0.00 41.47 4.12
1934 2628 9.540538 TTTAATGGAAGAACATTATTTGGGAGA 57.459 29.630 0.00 0.00 41.47 3.71
1935 2629 9.713684 TTAATGGAAGAACATTATTTGGGAGAT 57.286 29.630 0.00 0.00 41.47 2.75
1937 2631 9.887862 AATGGAAGAACATTATTTGGGAGATAT 57.112 29.630 0.00 0.00 39.18 1.63
1938 2632 9.887862 ATGGAAGAACATTATTTGGGAGATATT 57.112 29.630 0.00 0.00 0.00 1.28
1952 2646 9.753674 TTTGGGAGATATTATTACCATCAATCC 57.246 33.333 0.00 0.00 0.00 3.01
1953 2647 8.700145 TGGGAGATATTATTACCATCAATCCT 57.300 34.615 0.00 0.00 0.00 3.24
1954 2648 9.127560 TGGGAGATATTATTACCATCAATCCTT 57.872 33.333 0.00 0.00 0.00 3.36
1955 2649 9.401058 GGGAGATATTATTACCATCAATCCTTG 57.599 37.037 0.00 0.00 0.00 3.61
1961 2655 7.786178 TTATTACCATCAATCCTTGAGTTCG 57.214 36.000 0.00 0.00 43.98 3.95
1962 2656 3.981071 ACCATCAATCCTTGAGTTCGA 57.019 42.857 0.00 0.00 43.98 3.71
1963 2657 3.600388 ACCATCAATCCTTGAGTTCGAC 58.400 45.455 0.00 0.00 43.98 4.20
1964 2658 3.007940 ACCATCAATCCTTGAGTTCGACA 59.992 43.478 0.00 0.00 43.98 4.35
1965 2659 4.194640 CCATCAATCCTTGAGTTCGACAT 58.805 43.478 0.00 0.00 43.98 3.06
1966 2660 4.272018 CCATCAATCCTTGAGTTCGACATC 59.728 45.833 0.00 0.00 43.98 3.06
1967 2661 4.535526 TCAATCCTTGAGTTCGACATCA 57.464 40.909 0.00 0.00 34.08 3.07
1968 2662 5.089970 TCAATCCTTGAGTTCGACATCAT 57.910 39.130 0.00 0.00 34.08 2.45
1969 2663 6.220726 TCAATCCTTGAGTTCGACATCATA 57.779 37.500 0.00 0.00 34.08 2.15
1970 2664 6.820335 TCAATCCTTGAGTTCGACATCATAT 58.180 36.000 0.00 0.00 34.08 1.78
1971 2665 7.951591 TCAATCCTTGAGTTCGACATCATATA 58.048 34.615 0.00 0.00 34.08 0.86
1972 2666 8.421002 TCAATCCTTGAGTTCGACATCATATAA 58.579 33.333 0.00 0.00 34.08 0.98
1973 2667 8.706936 CAATCCTTGAGTTCGACATCATATAAG 58.293 37.037 0.00 0.00 0.00 1.73
1974 2668 6.749139 TCCTTGAGTTCGACATCATATAAGG 58.251 40.000 7.67 7.67 0.00 2.69
1975 2669 6.323996 TCCTTGAGTTCGACATCATATAAGGT 59.676 38.462 11.52 0.00 0.00 3.50
1976 2670 6.422100 CCTTGAGTTCGACATCATATAAGGTG 59.578 42.308 0.00 0.00 0.00 4.00
1977 2671 5.842907 TGAGTTCGACATCATATAAGGTGG 58.157 41.667 0.00 0.00 0.00 4.61
2139 2849 1.619654 ACTAATGCAAGTTGCCTGCA 58.380 45.000 24.59 7.59 44.23 4.41
2240 2952 8.915654 GTTGCACTTTTAATGGAAGAACATTAG 58.084 33.333 0.00 0.00 42.40 1.73
2254 2966 7.496263 GGAAGAACATTAGTTGGGAGATCTTAC 59.504 40.741 0.00 0.00 38.30 2.34
2316 3062 6.267471 TCCAGTTTGCACTCATTTTATTCCTT 59.733 34.615 0.00 0.00 0.00 3.36
2343 3089 4.336433 GGAGGAATTGATGATCTCGCAAAA 59.664 41.667 0.00 0.00 0.00 2.44
2344 3090 5.240713 AGGAATTGATGATCTCGCAAAAC 57.759 39.130 0.00 0.00 0.00 2.43
2369 3115 2.028130 TGTCCGTTGGTGCAAAAGAAT 58.972 42.857 0.00 0.00 0.00 2.40
2430 3457 6.806739 GTGGTGGCATTGTTAAAGACTTTATC 59.193 38.462 8.45 8.48 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.477685 TTTTTCCTCGCGGACCCTCT 61.478 55.000 6.13 0.00 39.60 3.69
1 2 1.004200 TTTTTCCTCGCGGACCCTC 60.004 57.895 6.13 0.00 39.60 4.30
2 3 3.153825 TTTTTCCTCGCGGACCCT 58.846 55.556 6.13 0.00 39.60 4.34
16 17 4.574828 AGTAATGCACACACGTCTCTTTTT 59.425 37.500 0.00 0.00 0.00 1.94
17 18 4.127171 AGTAATGCACACACGTCTCTTTT 58.873 39.130 0.00 0.00 0.00 2.27
18 19 3.728845 AGTAATGCACACACGTCTCTTT 58.271 40.909 0.00 0.00 0.00 2.52
19 20 3.386768 AGTAATGCACACACGTCTCTT 57.613 42.857 0.00 0.00 0.00 2.85
20 21 3.059884 CAAGTAATGCACACACGTCTCT 58.940 45.455 0.00 0.00 0.00 3.10
21 22 2.800544 ACAAGTAATGCACACACGTCTC 59.199 45.455 0.00 0.00 0.00 3.36
22 23 2.833794 ACAAGTAATGCACACACGTCT 58.166 42.857 0.00 0.00 0.00 4.18
23 24 3.602390 AACAAGTAATGCACACACGTC 57.398 42.857 0.00 0.00 0.00 4.34
24 25 4.101942 CAAAACAAGTAATGCACACACGT 58.898 39.130 0.00 0.00 0.00 4.49
25 26 3.061271 GCAAAACAAGTAATGCACACACG 60.061 43.478 0.00 0.00 38.63 4.49
26 27 3.245048 GGCAAAACAAGTAATGCACACAC 59.755 43.478 10.85 0.00 40.51 3.82
27 28 3.452474 GGCAAAACAAGTAATGCACACA 58.548 40.909 10.85 0.00 40.51 3.72
28 29 2.799978 GGGCAAAACAAGTAATGCACAC 59.200 45.455 10.85 0.00 41.76 3.82
29 30 3.104843 GGGCAAAACAAGTAATGCACA 57.895 42.857 10.85 0.00 41.76 4.57
30 31 3.104843 TGGGCAAAACAAGTAATGCAC 57.895 42.857 10.85 8.38 42.47 4.57
31 32 4.281941 TGTATGGGCAAAACAAGTAATGCA 59.718 37.500 10.85 0.00 40.51 3.96
32 33 4.815269 TGTATGGGCAAAACAAGTAATGC 58.185 39.130 2.57 2.57 38.06 3.56
33 34 7.915397 GTCTATGTATGGGCAAAACAAGTAATG 59.085 37.037 0.00 0.00 0.00 1.90
34 35 7.201696 CGTCTATGTATGGGCAAAACAAGTAAT 60.202 37.037 0.00 0.00 0.00 1.89
35 36 6.092944 CGTCTATGTATGGGCAAAACAAGTAA 59.907 38.462 0.00 0.00 0.00 2.24
36 37 5.583061 CGTCTATGTATGGGCAAAACAAGTA 59.417 40.000 0.00 0.00 0.00 2.24
37 38 4.394920 CGTCTATGTATGGGCAAAACAAGT 59.605 41.667 0.00 0.00 0.00 3.16
38 39 4.394920 ACGTCTATGTATGGGCAAAACAAG 59.605 41.667 0.00 0.00 0.00 3.16
39 40 4.155099 CACGTCTATGTATGGGCAAAACAA 59.845 41.667 0.00 0.00 0.00 2.83
40 41 3.687212 CACGTCTATGTATGGGCAAAACA 59.313 43.478 0.00 0.00 0.00 2.83
41 42 3.687698 ACACGTCTATGTATGGGCAAAAC 59.312 43.478 0.00 0.00 0.00 2.43
42 43 3.687212 CACACGTCTATGTATGGGCAAAA 59.313 43.478 0.00 0.00 0.00 2.44
43 44 3.266636 CACACGTCTATGTATGGGCAAA 58.733 45.455 0.00 0.00 0.00 3.68
44 45 2.419436 CCACACGTCTATGTATGGGCAA 60.419 50.000 0.00 0.00 0.00 4.52
45 46 1.138069 CCACACGTCTATGTATGGGCA 59.862 52.381 0.00 0.00 0.00 5.36
46 47 1.540363 CCCACACGTCTATGTATGGGC 60.540 57.143 5.75 0.00 31.13 5.36
47 48 1.540363 GCCCACACGTCTATGTATGGG 60.540 57.143 13.40 13.40 38.36 4.00
48 49 1.412710 AGCCCACACGTCTATGTATGG 59.587 52.381 0.00 0.00 0.00 2.74
49 50 2.100749 TCAGCCCACACGTCTATGTATG 59.899 50.000 0.00 0.00 0.00 2.39
50 51 2.384828 TCAGCCCACACGTCTATGTAT 58.615 47.619 0.00 0.00 0.00 2.29
51 52 1.842052 TCAGCCCACACGTCTATGTA 58.158 50.000 0.00 0.00 0.00 2.29
52 53 1.137086 GATCAGCCCACACGTCTATGT 59.863 52.381 0.00 0.00 0.00 2.29
53 54 1.539065 GGATCAGCCCACACGTCTATG 60.539 57.143 0.00 0.00 0.00 2.23
54 55 0.753262 GGATCAGCCCACACGTCTAT 59.247 55.000 0.00 0.00 0.00 1.98
55 56 0.324368 AGGATCAGCCCACACGTCTA 60.324 55.000 0.00 0.00 37.37 2.59
56 57 1.194781 AAGGATCAGCCCACACGTCT 61.195 55.000 0.00 0.00 37.37 4.18
57 58 0.321653 AAAGGATCAGCCCACACGTC 60.322 55.000 0.00 0.00 37.37 4.34
58 59 0.606401 CAAAGGATCAGCCCACACGT 60.606 55.000 0.00 0.00 37.37 4.49
59 60 0.321564 TCAAAGGATCAGCCCACACG 60.322 55.000 0.00 0.00 37.37 4.49
60 61 1.909700 TTCAAAGGATCAGCCCACAC 58.090 50.000 0.00 0.00 37.37 3.82
61 62 2.238521 GTTTCAAAGGATCAGCCCACA 58.761 47.619 0.00 0.00 37.37 4.17
62 63 2.029918 GTGTTTCAAAGGATCAGCCCAC 60.030 50.000 0.00 0.00 37.37 4.61
63 64 2.238521 GTGTTTCAAAGGATCAGCCCA 58.761 47.619 0.00 0.00 37.37 5.36
64 65 1.546029 GGTGTTTCAAAGGATCAGCCC 59.454 52.381 0.00 0.00 37.37 5.19
65 66 2.029918 GTGGTGTTTCAAAGGATCAGCC 60.030 50.000 0.00 0.00 0.00 4.85
66 67 2.622942 TGTGGTGTTTCAAAGGATCAGC 59.377 45.455 0.00 0.00 0.00 4.26
67 68 3.631686 TGTGTGGTGTTTCAAAGGATCAG 59.368 43.478 0.00 0.00 0.00 2.90
68 69 3.625853 TGTGTGGTGTTTCAAAGGATCA 58.374 40.909 0.00 0.00 0.00 2.92
69 70 4.647424 TTGTGTGGTGTTTCAAAGGATC 57.353 40.909 0.00 0.00 0.00 3.36
70 71 5.413309 TTTTGTGTGGTGTTTCAAAGGAT 57.587 34.783 0.00 0.00 32.67 3.24
71 72 4.873746 TTTTGTGTGGTGTTTCAAAGGA 57.126 36.364 0.00 0.00 32.67 3.36
72 73 6.760770 ACATATTTTGTGTGGTGTTTCAAAGG 59.239 34.615 0.00 0.00 37.11 3.11
73 74 7.769272 ACATATTTTGTGTGGTGTTTCAAAG 57.231 32.000 0.00 0.00 37.11 2.77
99 100 0.035739 TGGTCGTTAAAGGGTCTGCC 59.964 55.000 0.00 0.00 0.00 4.85
100 101 1.154197 GTGGTCGTTAAAGGGTCTGC 58.846 55.000 0.00 0.00 0.00 4.26
101 102 2.140717 GTGTGGTCGTTAAAGGGTCTG 58.859 52.381 0.00 0.00 0.00 3.51
102 103 1.269936 CGTGTGGTCGTTAAAGGGTCT 60.270 52.381 0.00 0.00 0.00 3.85
103 104 1.142474 CGTGTGGTCGTTAAAGGGTC 58.858 55.000 0.00 0.00 0.00 4.46
104 105 0.249996 CCGTGTGGTCGTTAAAGGGT 60.250 55.000 0.00 0.00 0.00 4.34
105 106 0.952010 CCCGTGTGGTCGTTAAAGGG 60.952 60.000 0.00 0.00 0.00 3.95
106 107 2.535588 CCCGTGTGGTCGTTAAAGG 58.464 57.895 0.00 0.00 0.00 3.11
117 118 1.017177 CGATAACACCCACCCGTGTG 61.017 60.000 0.00 0.00 46.19 3.82
119 120 1.448893 CCGATAACACCCACCCGTG 60.449 63.158 0.00 0.00 39.75 4.94
120 121 2.983791 CCGATAACACCCACCCGT 59.016 61.111 0.00 0.00 0.00 5.28
121 122 2.512974 GCCGATAACACCCACCCG 60.513 66.667 0.00 0.00 0.00 5.28
122 123 2.512974 CGCCGATAACACCCACCC 60.513 66.667 0.00 0.00 0.00 4.61
123 124 1.812507 GACGCCGATAACACCCACC 60.813 63.158 0.00 0.00 0.00 4.61
124 125 1.812507 GGACGCCGATAACACCCAC 60.813 63.158 0.00 0.00 0.00 4.61
125 126 1.546589 AAGGACGCCGATAACACCCA 61.547 55.000 0.00 0.00 0.00 4.51
126 127 0.808847 GAAGGACGCCGATAACACCC 60.809 60.000 0.00 0.00 0.00 4.61
127 128 1.143969 CGAAGGACGCCGATAACACC 61.144 60.000 0.00 0.00 34.51 4.16
128 129 0.179156 TCGAAGGACGCCGATAACAC 60.179 55.000 0.00 0.00 42.26 3.32
129 130 0.527113 TTCGAAGGACGCCGATAACA 59.473 50.000 0.00 0.00 42.26 2.41
130 131 1.849097 ATTCGAAGGACGCCGATAAC 58.151 50.000 3.35 0.00 42.26 1.89
131 132 3.366679 GGATATTCGAAGGACGCCGATAA 60.367 47.826 3.35 0.00 42.26 1.75
132 133 2.163010 GGATATTCGAAGGACGCCGATA 59.837 50.000 3.35 0.00 42.26 2.92
133 134 1.067776 GGATATTCGAAGGACGCCGAT 60.068 52.381 3.35 0.00 42.26 4.18
134 135 0.313043 GGATATTCGAAGGACGCCGA 59.687 55.000 3.35 0.00 42.26 5.54
135 136 1.002250 CGGATATTCGAAGGACGCCG 61.002 60.000 3.35 8.48 42.26 6.46
136 137 0.031721 ACGGATATTCGAAGGACGCC 59.968 55.000 11.21 0.00 42.26 5.68
137 138 2.225019 TCTACGGATATTCGAAGGACGC 59.775 50.000 11.21 0.00 42.26 5.19
138 139 3.120269 CCTCTACGGATATTCGAAGGACG 60.120 52.174 11.21 8.26 38.04 4.79
139 140 3.819902 ACCTCTACGGATATTCGAAGGAC 59.180 47.826 22.47 0.00 34.57 3.85
140 141 4.070716 GACCTCTACGGATATTCGAAGGA 58.929 47.826 22.47 11.95 34.57 3.36
141 142 3.819337 TGACCTCTACGGATATTCGAAGG 59.181 47.826 11.21 15.09 36.31 3.46
142 143 4.515944 ACTGACCTCTACGGATATTCGAAG 59.484 45.833 11.21 4.46 36.31 3.79
143 144 4.458397 ACTGACCTCTACGGATATTCGAA 58.542 43.478 11.21 0.00 36.31 3.71
144 145 4.082665 ACTGACCTCTACGGATATTCGA 57.917 45.455 11.21 0.00 36.31 3.71
145 146 4.832590 AACTGACCTCTACGGATATTCG 57.167 45.455 0.61 0.61 36.31 3.34
157 158 6.226787 TCAGATGAAAGAGAAAACTGACCTC 58.773 40.000 0.00 0.00 0.00 3.85
219 220 2.110578 GAAATGGGCTTTGGCACCTAT 58.889 47.619 0.00 0.00 42.08 2.57
505 540 2.093764 CGGAGAAAGGCTGAGACTTGAT 60.094 50.000 0.00 0.00 27.73 2.57
933 980 4.443266 AGGTCGCCGAGCTGCTTC 62.443 66.667 19.14 0.00 39.04 3.86
934 981 4.443266 GAGGTCGCCGAGCTGCTT 62.443 66.667 24.94 0.00 40.67 3.91
1178 1228 1.628340 TGGCGAATTCCTCTTCTTCCA 59.372 47.619 0.00 0.00 0.00 3.53
1224 1274 3.804036 CCTTTCCATGCGGTACTTATCA 58.196 45.455 0.00 0.00 0.00 2.15
1227 1277 1.557832 AGCCTTTCCATGCGGTACTTA 59.442 47.619 0.00 0.00 0.00 2.24
1242 1292 0.743701 CGCAGATCAGCTTGAGCCTT 60.744 55.000 8.57 0.00 43.38 4.35
1484 2092 9.676861 ATCAATCAAGAATCAACTATCACTGAA 57.323 29.630 0.00 0.00 0.00 3.02
1493 2101 7.443302 TCCTAGGATCAATCAAGAATCAACT 57.557 36.000 7.62 0.00 0.00 3.16
1644 2334 7.995289 TGATTAATTGGTAAGGTTGCACATAG 58.005 34.615 0.00 0.00 0.00 2.23
1679 2373 5.737860 TGTCATCTGATAACTCACAATGCT 58.262 37.500 0.00 0.00 0.00 3.79
1701 2395 4.112634 CAAATGGAGATTGAGCTGCAATG 58.887 43.478 13.78 0.00 46.90 2.82
1703 2397 3.159472 ACAAATGGAGATTGAGCTGCAA 58.841 40.909 1.02 0.00 39.70 4.08
1704 2398 2.799017 ACAAATGGAGATTGAGCTGCA 58.201 42.857 1.02 0.00 40.57 4.41
1705 2399 3.442977 AGAACAAATGGAGATTGAGCTGC 59.557 43.478 0.00 0.00 0.00 5.25
1706 2400 4.458295 ACAGAACAAATGGAGATTGAGCTG 59.542 41.667 0.00 0.00 37.88 4.24
1707 2401 4.660168 ACAGAACAAATGGAGATTGAGCT 58.340 39.130 0.00 0.00 0.00 4.09
1708 2402 5.182760 AGAACAGAACAAATGGAGATTGAGC 59.817 40.000 0.00 0.00 0.00 4.26
1709 2403 6.814506 AGAACAGAACAAATGGAGATTGAG 57.185 37.500 0.00 0.00 0.00 3.02
1710 2404 6.515531 GCAAGAACAGAACAAATGGAGATTGA 60.516 38.462 0.00 0.00 0.00 2.57
1711 2405 5.632347 GCAAGAACAGAACAAATGGAGATTG 59.368 40.000 0.00 0.00 0.00 2.67
1712 2406 5.537674 AGCAAGAACAGAACAAATGGAGATT 59.462 36.000 0.00 0.00 0.00 2.40
1713 2407 5.075493 AGCAAGAACAGAACAAATGGAGAT 58.925 37.500 0.00 0.00 0.00 2.75
1714 2408 4.464008 AGCAAGAACAGAACAAATGGAGA 58.536 39.130 0.00 0.00 0.00 3.71
1715 2409 4.843220 AGCAAGAACAGAACAAATGGAG 57.157 40.909 0.00 0.00 0.00 3.86
1716 2410 5.827797 AGTTAGCAAGAACAGAACAAATGGA 59.172 36.000 0.00 0.00 0.00 3.41
1717 2411 6.076981 AGTTAGCAAGAACAGAACAAATGG 57.923 37.500 0.00 0.00 0.00 3.16
1718 2412 6.728200 TGAGTTAGCAAGAACAGAACAAATG 58.272 36.000 0.00 0.00 0.00 2.32
1719 2413 6.942532 TGAGTTAGCAAGAACAGAACAAAT 57.057 33.333 0.00 0.00 0.00 2.32
1720 2414 6.942532 ATGAGTTAGCAAGAACAGAACAAA 57.057 33.333 0.00 0.00 0.00 2.83
1721 2415 6.318648 ACAATGAGTTAGCAAGAACAGAACAA 59.681 34.615 0.00 0.00 0.00 2.83
1722 2416 5.822519 ACAATGAGTTAGCAAGAACAGAACA 59.177 36.000 0.00 0.00 0.00 3.18
1723 2417 6.138761 CACAATGAGTTAGCAAGAACAGAAC 58.861 40.000 0.00 0.00 0.00 3.01
1724 2418 5.822519 ACACAATGAGTTAGCAAGAACAGAA 59.177 36.000 0.00 0.00 0.00 3.02
1725 2419 5.368145 ACACAATGAGTTAGCAAGAACAGA 58.632 37.500 0.00 0.00 0.00 3.41
1726 2420 5.679734 ACACAATGAGTTAGCAAGAACAG 57.320 39.130 0.00 0.00 0.00 3.16
1727 2421 5.822519 AGAACACAATGAGTTAGCAAGAACA 59.177 36.000 0.00 0.00 0.00 3.18
1728 2422 6.305693 AGAACACAATGAGTTAGCAAGAAC 57.694 37.500 0.00 0.00 0.00 3.01
1729 2423 5.470098 GGAGAACACAATGAGTTAGCAAGAA 59.530 40.000 0.00 0.00 0.00 2.52
1730 2424 4.997395 GGAGAACACAATGAGTTAGCAAGA 59.003 41.667 0.00 0.00 0.00 3.02
1731 2425 4.999950 AGGAGAACACAATGAGTTAGCAAG 59.000 41.667 0.00 0.00 0.00 4.01
1732 2426 4.973168 AGGAGAACACAATGAGTTAGCAA 58.027 39.130 0.00 0.00 0.00 3.91
1733 2427 4.284490 AGAGGAGAACACAATGAGTTAGCA 59.716 41.667 0.00 0.00 0.00 3.49
1734 2428 4.826556 AGAGGAGAACACAATGAGTTAGC 58.173 43.478 0.00 0.00 0.00 3.09
1737 2431 9.965902 ATTTATTAGAGGAGAACACAATGAGTT 57.034 29.630 0.00 0.00 0.00 3.01
1744 2438 9.582431 CGAAACTATTTATTAGAGGAGAACACA 57.418 33.333 0.00 0.00 0.00 3.72
1745 2439 9.032420 CCGAAACTATTTATTAGAGGAGAACAC 57.968 37.037 0.00 0.00 0.00 3.32
1746 2440 8.202137 CCCGAAACTATTTATTAGAGGAGAACA 58.798 37.037 0.00 0.00 0.00 3.18
1747 2441 7.656542 CCCCGAAACTATTTATTAGAGGAGAAC 59.343 40.741 0.00 0.00 0.00 3.01
1748 2442 7.566138 TCCCCGAAACTATTTATTAGAGGAGAA 59.434 37.037 0.00 0.00 0.00 2.87
1749 2443 7.071273 TCCCCGAAACTATTTATTAGAGGAGA 58.929 38.462 0.00 0.00 0.00 3.71
1750 2444 7.299246 TCCCCGAAACTATTTATTAGAGGAG 57.701 40.000 0.00 0.00 0.00 3.69
1751 2445 7.679732 TTCCCCGAAACTATTTATTAGAGGA 57.320 36.000 0.00 0.00 0.00 3.71
1752 2446 8.919777 ATTTCCCCGAAACTATTTATTAGAGG 57.080 34.615 0.00 0.00 34.23 3.69
1757 2451 9.245481 TGTGTTATTTCCCCGAAACTATTTATT 57.755 29.630 0.00 0.00 34.23 1.40
1758 2452 8.810990 TGTGTTATTTCCCCGAAACTATTTAT 57.189 30.769 0.00 0.00 34.23 1.40
1759 2453 8.679100 CATGTGTTATTTCCCCGAAACTATTTA 58.321 33.333 0.00 0.00 34.23 1.40
1760 2454 7.394923 TCATGTGTTATTTCCCCGAAACTATTT 59.605 33.333 0.00 0.00 34.23 1.40
1761 2455 6.887545 TCATGTGTTATTTCCCCGAAACTATT 59.112 34.615 0.00 0.00 34.23 1.73
1762 2456 6.419791 TCATGTGTTATTTCCCCGAAACTAT 58.580 36.000 0.00 0.00 34.23 2.12
1763 2457 5.806818 TCATGTGTTATTTCCCCGAAACTA 58.193 37.500 0.00 0.00 34.23 2.24
1764 2458 4.658063 TCATGTGTTATTTCCCCGAAACT 58.342 39.130 0.00 0.00 34.23 2.66
1765 2459 5.379732 TTCATGTGTTATTTCCCCGAAAC 57.620 39.130 0.00 0.00 34.23 2.78
1766 2460 5.949354 AGATTCATGTGTTATTTCCCCGAAA 59.051 36.000 0.00 0.00 35.94 3.46
1767 2461 5.505780 AGATTCATGTGTTATTTCCCCGAA 58.494 37.500 0.00 0.00 0.00 4.30
1768 2462 5.110814 AGATTCATGTGTTATTTCCCCGA 57.889 39.130 0.00 0.00 0.00 5.14
1769 2463 5.835113 AAGATTCATGTGTTATTTCCCCG 57.165 39.130 0.00 0.00 0.00 5.73
1770 2464 6.381133 AGGAAAGATTCATGTGTTATTTCCCC 59.619 38.462 18.77 5.57 43.28 4.81
1771 2465 7.410120 AGGAAAGATTCATGTGTTATTTCCC 57.590 36.000 18.77 8.69 43.28 3.97
1772 2466 8.522830 TGAAGGAAAGATTCATGTGTTATTTCC 58.477 33.333 16.55 16.55 42.82 3.13
1783 2477 8.655935 AGTAAAACCATGAAGGAAAGATTCAT 57.344 30.769 0.00 0.00 45.88 2.57
1784 2478 9.581289 TTAGTAAAACCATGAAGGAAAGATTCA 57.419 29.630 0.00 0.00 41.22 2.57
1787 2481 9.190317 GGATTAGTAAAACCATGAAGGAAAGAT 57.810 33.333 0.00 0.00 41.22 2.40
1788 2482 8.167392 TGGATTAGTAAAACCATGAAGGAAAGA 58.833 33.333 0.00 0.00 41.22 2.52
1789 2483 8.348285 TGGATTAGTAAAACCATGAAGGAAAG 57.652 34.615 0.00 0.00 41.22 2.62
1790 2484 8.713708 TTGGATTAGTAAAACCATGAAGGAAA 57.286 30.769 11.29 0.00 37.39 3.13
1791 2485 7.947890 ACTTGGATTAGTAAAACCATGAAGGAA 59.052 33.333 21.09 5.59 37.39 3.36
1792 2486 7.466804 ACTTGGATTAGTAAAACCATGAAGGA 58.533 34.615 21.09 6.07 37.39 3.36
1793 2487 7.414098 CGACTTGGATTAGTAAAACCATGAAGG 60.414 40.741 21.09 11.86 37.39 3.46
1794 2488 7.464358 CGACTTGGATTAGTAAAACCATGAAG 58.536 38.462 21.09 14.51 37.39 3.02
1795 2489 6.128117 GCGACTTGGATTAGTAAAACCATGAA 60.128 38.462 21.09 7.03 37.39 2.57
1796 2490 5.353123 GCGACTTGGATTAGTAAAACCATGA 59.647 40.000 21.09 7.51 37.39 3.07
1797 2491 5.448632 GGCGACTTGGATTAGTAAAACCATG 60.449 44.000 16.47 16.47 37.39 3.66
1798 2492 4.638865 GGCGACTTGGATTAGTAAAACCAT 59.361 41.667 11.29 1.01 37.39 3.55
1799 2493 4.004982 GGCGACTTGGATTAGTAAAACCA 58.995 43.478 7.73 7.73 35.88 3.67
1800 2494 4.094442 CAGGCGACTTGGATTAGTAAAACC 59.906 45.833 0.00 3.45 40.21 3.27
1801 2495 4.436986 GCAGGCGACTTGGATTAGTAAAAC 60.437 45.833 0.00 0.00 40.21 2.43
1802 2496 3.687698 GCAGGCGACTTGGATTAGTAAAA 59.312 43.478 0.00 0.00 40.21 1.52
1803 2497 3.055385 AGCAGGCGACTTGGATTAGTAAA 60.055 43.478 0.00 0.00 40.21 2.01
1804 2498 2.500098 AGCAGGCGACTTGGATTAGTAA 59.500 45.455 0.00 0.00 40.21 2.24
1805 2499 2.108168 AGCAGGCGACTTGGATTAGTA 58.892 47.619 0.00 0.00 40.21 1.82
1806 2500 0.905357 AGCAGGCGACTTGGATTAGT 59.095 50.000 0.00 0.00 40.21 2.24
1807 2501 2.890808 TAGCAGGCGACTTGGATTAG 57.109 50.000 0.00 0.00 40.21 1.73
1808 2502 3.838244 AATAGCAGGCGACTTGGATTA 57.162 42.857 0.00 0.00 40.21 1.75
1809 2503 2.717639 AATAGCAGGCGACTTGGATT 57.282 45.000 0.00 0.00 40.21 3.01
1810 2504 2.717639 AAATAGCAGGCGACTTGGAT 57.282 45.000 0.00 0.00 40.21 3.41
1811 2505 2.027192 AGAAAATAGCAGGCGACTTGGA 60.027 45.455 0.00 0.00 40.21 3.53
1812 2506 2.359900 AGAAAATAGCAGGCGACTTGG 58.640 47.619 0.00 0.00 40.21 3.61
1813 2507 4.425577 AAAGAAAATAGCAGGCGACTTG 57.574 40.909 0.00 0.00 40.21 3.16
1814 2508 4.278419 ACAAAAGAAAATAGCAGGCGACTT 59.722 37.500 0.00 0.00 40.21 3.01
1815 2509 3.821033 ACAAAAGAAAATAGCAGGCGACT 59.179 39.130 0.00 0.00 46.44 4.18
1816 2510 4.159120 GACAAAAGAAAATAGCAGGCGAC 58.841 43.478 0.00 0.00 0.00 5.19
1817 2511 3.190535 GGACAAAAGAAAATAGCAGGCGA 59.809 43.478 0.00 0.00 0.00 5.54
1818 2512 3.057596 TGGACAAAAGAAAATAGCAGGCG 60.058 43.478 0.00 0.00 0.00 5.52
1819 2513 4.519540 TGGACAAAAGAAAATAGCAGGC 57.480 40.909 0.00 0.00 0.00 4.85
1820 2514 6.089249 ACTTGGACAAAAGAAAATAGCAGG 57.911 37.500 0.00 0.00 0.00 4.85
1821 2515 6.738114 TGACTTGGACAAAAGAAAATAGCAG 58.262 36.000 0.00 0.00 0.00 4.24
1822 2516 6.707440 TGACTTGGACAAAAGAAAATAGCA 57.293 33.333 0.00 0.00 0.00 3.49
1823 2517 9.860898 ATATTGACTTGGACAAAAGAAAATAGC 57.139 29.630 0.00 0.00 29.78 2.97
1832 2526 9.323985 CCTTTTCAAATATTGACTTGGACAAAA 57.676 29.630 0.00 0.00 39.87 2.44
1833 2527 7.930865 CCCTTTTCAAATATTGACTTGGACAAA 59.069 33.333 0.00 0.00 39.87 2.83
1834 2528 7.070571 ACCCTTTTCAAATATTGACTTGGACAA 59.929 33.333 0.00 0.00 39.87 3.18
1835 2529 6.553100 ACCCTTTTCAAATATTGACTTGGACA 59.447 34.615 0.00 0.00 39.87 4.02
1836 2530 6.868339 CACCCTTTTCAAATATTGACTTGGAC 59.132 38.462 0.00 0.00 39.87 4.02
1837 2531 6.780031 TCACCCTTTTCAAATATTGACTTGGA 59.220 34.615 0.00 0.00 39.87 3.53
1838 2532 6.868339 GTCACCCTTTTCAAATATTGACTTGG 59.132 38.462 0.00 0.00 39.87 3.61
1839 2533 6.868339 GGTCACCCTTTTCAAATATTGACTTG 59.132 38.462 0.00 0.00 39.87 3.16
1840 2534 6.782494 AGGTCACCCTTTTCAAATATTGACTT 59.218 34.615 0.00 0.00 38.13 3.01
1841 2535 6.314917 AGGTCACCCTTTTCAAATATTGACT 58.685 36.000 0.00 0.00 38.13 3.41
1842 2536 6.208599 TGAGGTCACCCTTTTCAAATATTGAC 59.791 38.462 0.00 0.00 42.86 3.18
1843 2537 6.310941 TGAGGTCACCCTTTTCAAATATTGA 58.689 36.000 0.00 0.00 42.86 2.57
1844 2538 6.588719 TGAGGTCACCCTTTTCAAATATTG 57.411 37.500 0.00 0.00 42.86 1.90
1845 2539 7.797121 ATTGAGGTCACCCTTTTCAAATATT 57.203 32.000 0.61 0.00 42.86 1.28
1846 2540 7.797121 AATTGAGGTCACCCTTTTCAAATAT 57.203 32.000 0.61 0.00 42.86 1.28
1847 2541 7.441017 CAAATTGAGGTCACCCTTTTCAAATA 58.559 34.615 0.61 0.00 42.86 1.40
1848 2542 6.290605 CAAATTGAGGTCACCCTTTTCAAAT 58.709 36.000 0.61 0.00 42.86 2.32
1849 2543 5.669477 CAAATTGAGGTCACCCTTTTCAAA 58.331 37.500 0.61 0.00 42.86 2.69
1850 2544 4.442753 GCAAATTGAGGTCACCCTTTTCAA 60.443 41.667 0.00 0.00 42.86 2.69
1851 2545 3.069443 GCAAATTGAGGTCACCCTTTTCA 59.931 43.478 0.00 0.00 42.86 2.69
1852 2546 3.321968 AGCAAATTGAGGTCACCCTTTTC 59.678 43.478 0.00 0.00 42.86 2.29
1853 2547 3.070015 CAGCAAATTGAGGTCACCCTTTT 59.930 43.478 0.00 0.00 42.86 2.27
1854 2548 2.629617 CAGCAAATTGAGGTCACCCTTT 59.370 45.455 0.00 0.00 42.86 3.11
1855 2549 2.158475 TCAGCAAATTGAGGTCACCCTT 60.158 45.455 0.00 0.00 42.86 3.95
1856 2550 1.425066 TCAGCAAATTGAGGTCACCCT 59.575 47.619 0.00 0.00 46.66 4.34
1857 2551 1.909700 TCAGCAAATTGAGGTCACCC 58.090 50.000 0.00 0.00 0.00 4.61
1858 2552 2.416431 GCATCAGCAAATTGAGGTCACC 60.416 50.000 0.00 0.00 41.58 4.02
1859 2553 2.872370 GCATCAGCAAATTGAGGTCAC 58.128 47.619 0.00 0.00 41.58 3.67
1872 2566 6.418819 GGTGAAAATGTTATATGTGCATCAGC 59.581 38.462 0.00 0.00 42.57 4.26
1873 2567 6.919662 GGGTGAAAATGTTATATGTGCATCAG 59.080 38.462 0.00 0.00 0.00 2.90
1874 2568 6.459435 CGGGTGAAAATGTTATATGTGCATCA 60.459 38.462 0.00 0.00 0.00 3.07
1875 2569 5.914635 CGGGTGAAAATGTTATATGTGCATC 59.085 40.000 0.00 0.00 0.00 3.91
1876 2570 5.221224 CCGGGTGAAAATGTTATATGTGCAT 60.221 40.000 0.00 0.00 0.00 3.96
1877 2571 4.097135 CCGGGTGAAAATGTTATATGTGCA 59.903 41.667 0.00 0.00 0.00 4.57
1878 2572 4.097286 ACCGGGTGAAAATGTTATATGTGC 59.903 41.667 6.32 0.00 0.00 4.57
1879 2573 5.828299 ACCGGGTGAAAATGTTATATGTG 57.172 39.130 6.32 0.00 0.00 3.21
1880 2574 5.393678 GCAACCGGGTGAAAATGTTATATGT 60.394 40.000 27.49 0.00 0.00 2.29
1881 2575 5.040635 GCAACCGGGTGAAAATGTTATATG 58.959 41.667 27.49 0.00 0.00 1.78
1882 2576 4.707448 TGCAACCGGGTGAAAATGTTATAT 59.293 37.500 27.49 0.00 0.00 0.86
1883 2577 4.079970 TGCAACCGGGTGAAAATGTTATA 58.920 39.130 27.49 0.00 0.00 0.98
1884 2578 2.894126 TGCAACCGGGTGAAAATGTTAT 59.106 40.909 27.49 0.00 0.00 1.89
1885 2579 2.034812 GTGCAACCGGGTGAAAATGTTA 59.965 45.455 27.49 0.00 0.00 2.41
1886 2580 1.115467 TGCAACCGGGTGAAAATGTT 58.885 45.000 27.49 0.00 0.00 2.71
1887 2581 0.387565 GTGCAACCGGGTGAAAATGT 59.612 50.000 27.49 0.00 0.00 2.71
1888 2582 0.673437 AGTGCAACCGGGTGAAAATG 59.327 50.000 27.49 0.00 37.80 2.32
1889 2583 1.408969 AAGTGCAACCGGGTGAAAAT 58.591 45.000 27.49 6.73 37.80 1.82
1890 2584 1.187087 AAAGTGCAACCGGGTGAAAA 58.813 45.000 27.49 4.43 37.80 2.29
1891 2585 1.187087 AAAAGTGCAACCGGGTGAAA 58.813 45.000 27.49 7.61 37.80 2.69
1892 2586 2.054232 TAAAAGTGCAACCGGGTGAA 57.946 45.000 27.49 11.35 37.80 3.18
1893 2587 2.054232 TTAAAAGTGCAACCGGGTGA 57.946 45.000 27.49 5.45 37.80 4.02
1894 2588 2.609244 CCATTAAAAGTGCAACCGGGTG 60.609 50.000 17.47 17.47 37.80 4.61
1895 2589 1.616374 CCATTAAAAGTGCAACCGGGT 59.384 47.619 6.32 0.00 37.80 5.28
1896 2590 1.889829 TCCATTAAAAGTGCAACCGGG 59.110 47.619 6.32 0.00 37.80 5.73
1897 2591 3.254657 TCTTCCATTAAAAGTGCAACCGG 59.745 43.478 0.00 0.00 37.80 5.28
1898 2592 4.497473 TCTTCCATTAAAAGTGCAACCG 57.503 40.909 0.00 0.00 37.80 4.44
1899 2593 5.596845 TGTTCTTCCATTAAAAGTGCAACC 58.403 37.500 0.00 0.00 37.80 3.77
1900 2594 7.713764 AATGTTCTTCCATTAAAAGTGCAAC 57.286 32.000 0.00 0.00 33.37 4.17
1901 2595 9.995003 AATAATGTTCTTCCATTAAAAGTGCAA 57.005 25.926 0.00 0.00 39.88 4.08
1902 2596 9.995003 AAATAATGTTCTTCCATTAAAAGTGCA 57.005 25.926 0.00 0.00 39.88 4.57
1905 2599 9.942850 CCCAAATAATGTTCTTCCATTAAAAGT 57.057 29.630 0.00 0.00 39.88 2.66
1908 2602 9.540538 TCTCCCAAATAATGTTCTTCCATTAAA 57.459 29.630 0.00 0.00 39.88 1.52
1909 2603 9.713684 ATCTCCCAAATAATGTTCTTCCATTAA 57.286 29.630 0.00 0.00 39.88 1.40
1911 2605 9.887862 ATATCTCCCAAATAATGTTCTTCCATT 57.112 29.630 0.00 0.00 38.54 3.16
1912 2606 9.887862 AATATCTCCCAAATAATGTTCTTCCAT 57.112 29.630 0.00 0.00 0.00 3.41
1926 2620 9.753674 GGATTGATGGTAATAATATCTCCCAAA 57.246 33.333 0.00 0.00 0.00 3.28
1927 2621 9.127560 AGGATTGATGGTAATAATATCTCCCAA 57.872 33.333 0.00 0.00 0.00 4.12
1928 2622 8.700145 AGGATTGATGGTAATAATATCTCCCA 57.300 34.615 0.00 0.00 0.00 4.37
1948 2642 7.875041 CCTTATATGATGTCGAACTCAAGGATT 59.125 37.037 7.64 0.00 0.00 3.01
1949 2643 7.015682 ACCTTATATGATGTCGAACTCAAGGAT 59.984 37.037 15.64 7.82 0.00 3.24
1950 2644 6.323996 ACCTTATATGATGTCGAACTCAAGGA 59.676 38.462 15.64 2.56 0.00 3.36
1951 2645 6.422100 CACCTTATATGATGTCGAACTCAAGG 59.578 42.308 10.33 10.33 0.00 3.61
1952 2646 6.422100 CCACCTTATATGATGTCGAACTCAAG 59.578 42.308 2.63 0.00 0.00 3.02
1953 2647 6.280643 CCACCTTATATGATGTCGAACTCAA 58.719 40.000 2.63 0.00 0.00 3.02
1954 2648 5.739070 GCCACCTTATATGATGTCGAACTCA 60.739 44.000 1.09 1.09 0.00 3.41
1955 2649 4.686554 GCCACCTTATATGATGTCGAACTC 59.313 45.833 0.00 0.00 0.00 3.01
1956 2650 4.100963 TGCCACCTTATATGATGTCGAACT 59.899 41.667 0.00 0.00 0.00 3.01
1957 2651 4.377021 TGCCACCTTATATGATGTCGAAC 58.623 43.478 0.00 0.00 0.00 3.95
1958 2652 4.681074 TGCCACCTTATATGATGTCGAA 57.319 40.909 0.00 0.00 0.00 3.71
1959 2653 4.890158 ATGCCACCTTATATGATGTCGA 57.110 40.909 0.00 0.00 0.00 4.20
1960 2654 4.378770 GCAATGCCACCTTATATGATGTCG 60.379 45.833 0.00 0.00 0.00 4.35
1961 2655 4.520111 TGCAATGCCACCTTATATGATGTC 59.480 41.667 1.53 0.00 0.00 3.06
1962 2656 4.472496 TGCAATGCCACCTTATATGATGT 58.528 39.130 1.53 0.00 0.00 3.06
1963 2657 4.521639 ACTGCAATGCCACCTTATATGATG 59.478 41.667 1.53 0.00 0.00 3.07
1964 2658 4.733165 ACTGCAATGCCACCTTATATGAT 58.267 39.130 1.53 0.00 0.00 2.45
1965 2659 4.169059 ACTGCAATGCCACCTTATATGA 57.831 40.909 1.53 0.00 0.00 2.15
1966 2660 4.338964 TCAACTGCAATGCCACCTTATATG 59.661 41.667 1.53 0.00 0.00 1.78
1967 2661 4.535781 TCAACTGCAATGCCACCTTATAT 58.464 39.130 1.53 0.00 0.00 0.86
1968 2662 3.961849 TCAACTGCAATGCCACCTTATA 58.038 40.909 1.53 0.00 0.00 0.98
1969 2663 2.806434 TCAACTGCAATGCCACCTTAT 58.194 42.857 1.53 0.00 0.00 1.73
1970 2664 2.284754 TCAACTGCAATGCCACCTTA 57.715 45.000 1.53 0.00 0.00 2.69
1971 2665 1.412079 TTCAACTGCAATGCCACCTT 58.588 45.000 1.53 0.00 0.00 3.50
1972 2666 1.547372 GATTCAACTGCAATGCCACCT 59.453 47.619 1.53 0.00 0.00 4.00
1973 2667 1.547372 AGATTCAACTGCAATGCCACC 59.453 47.619 1.53 0.00 0.00 4.61
1974 2668 2.416431 GGAGATTCAACTGCAATGCCAC 60.416 50.000 1.53 0.00 0.00 5.01
1975 2669 1.820519 GGAGATTCAACTGCAATGCCA 59.179 47.619 1.53 0.00 0.00 4.92
1976 2670 1.820519 TGGAGATTCAACTGCAATGCC 59.179 47.619 1.53 0.00 35.47 4.40
1977 2671 3.795623 ATGGAGATTCAACTGCAATGC 57.204 42.857 0.00 0.00 41.12 3.56
2107 2816 9.906660 CAACTTGCATTAGTAAAACCATTAAGA 57.093 29.630 0.00 0.00 0.00 2.10
2240 2952 3.698040 TGACGGTAGTAAGATCTCCCAAC 59.302 47.826 0.00 0.00 0.00 3.77
2316 3062 5.221702 TGCGAGATCATCAATTCCTCCATTA 60.222 40.000 0.00 0.00 0.00 1.90
2343 3089 1.901464 GCACCAACGGACAATGGGT 60.901 57.895 0.00 0.00 41.17 4.51
2344 3090 1.459455 TTGCACCAACGGACAATGGG 61.459 55.000 0.00 0.00 41.17 4.00
2369 3115 4.009675 ACAATGCTGGATAGAAGCGAAAA 58.990 39.130 0.00 0.00 43.88 2.29
2373 3119 1.524355 CGACAATGCTGGATAGAAGCG 59.476 52.381 0.00 0.00 43.88 4.68
2430 3457 9.893305 CCTAATTTACTGGTTTCTAACTTTGTG 57.107 33.333 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.