Multiple sequence alignment - TraesCS3B01G147700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G147700 chr3B 100.000 3268 0 0 1 3268 139039966 139036699 0.000000e+00 6035.0
1 TraesCS3B01G147700 chr3B 95.249 842 35 5 1 841 544824961 544824124 0.000000e+00 1328.0
2 TraesCS3B01G147700 chr3B 86.754 1140 125 16 1058 2191 139196564 139195445 0.000000e+00 1245.0
3 TraesCS3B01G147700 chr3B 100.000 28 0 0 2305 2332 139037635 139037662 6.000000e-03 52.8
4 TraesCS3B01G147700 chr5B 94.462 957 25 3 1 931 13386435 13387389 0.000000e+00 1448.0
5 TraesCS3B01G147700 chr6B 94.439 953 27 7 1 927 52818059 52819011 0.000000e+00 1443.0
6 TraesCS3B01G147700 chr4B 94.439 953 26 3 1 927 96633365 96634316 0.000000e+00 1441.0
7 TraesCS3B01G147700 chr4B 92.593 108 5 2 2811 2915 404853220 404853327 5.650000e-33 152.0
8 TraesCS3B01G147700 chr2B 92.925 947 35 6 1 928 530104459 530103526 0.000000e+00 1349.0
9 TraesCS3B01G147700 chr2B 96.947 131 4 0 2911 3041 648808529 648808659 1.530000e-53 220.0
10 TraesCS3B01G147700 chr2B 79.079 239 27 11 2811 3040 195058401 195058177 3.400000e-30 143.0
11 TraesCS3B01G147700 chrUn 91.937 955 47 11 1 928 35418538 35419489 0.000000e+00 1310.0
12 TraesCS3B01G147700 chrUn 83.058 242 24 14 2809 3040 339419959 339419725 1.540000e-48 204.0
13 TraesCS3B01G147700 chrUn 83.058 242 24 14 2809 3040 339422529 339422295 1.540000e-48 204.0
14 TraesCS3B01G147700 chrUn 83.058 242 24 14 2809 3040 389022666 389022432 1.540000e-48 204.0
15 TraesCS3B01G147700 chr3D 88.747 1093 70 33 1418 2486 89628282 89627219 0.000000e+00 1288.0
16 TraesCS3B01G147700 chr3D 86.953 1142 124 13 1058 2191 89639210 89638086 0.000000e+00 1260.0
17 TraesCS3B01G147700 chr3D 90.387 957 58 11 1 930 37549219 37548270 0.000000e+00 1227.0
18 TraesCS3B01G147700 chr3D 86.943 651 73 9 1410 2057 89547598 89546957 0.000000e+00 721.0
19 TraesCS3B01G147700 chr3D 98.701 231 3 0 3038 3268 89545782 89545552 8.440000e-111 411.0
20 TraesCS3B01G147700 chr3D 91.958 286 11 5 2046 2322 89546410 89546128 1.100000e-104 390.0
21 TraesCS3B01G147700 chr3D 86.017 236 24 6 958 1191 89553920 89553692 9.060000e-61 244.0
22 TraesCS3B01G147700 chr3D 91.573 178 10 2 2335 2508 89546086 89545910 1.170000e-59 241.0
23 TraesCS3B01G147700 chr3D 85.635 181 20 5 1183 1357 89547807 89547627 5.570000e-43 185.0
24 TraesCS3B01G147700 chr3D 97.826 46 1 0 928 973 89554975 89554930 2.700000e-11 80.5
25 TraesCS3B01G147700 chr5D 91.588 951 50 9 16 936 438179724 438180674 0.000000e+00 1286.0
26 TraesCS3B01G147700 chr5D 92.134 928 41 11 29 924 444479201 444480128 0.000000e+00 1280.0
27 TraesCS3B01G147700 chr5D 90.179 112 8 3 2807 2915 69953544 69953655 3.400000e-30 143.0
28 TraesCS3B01G147700 chr7B 91.465 949 52 9 1 936 616751304 616750372 0.000000e+00 1277.0
29 TraesCS3B01G147700 chr7B 91.589 107 7 2 2807 2911 714316108 714316002 2.630000e-31 147.0
30 TraesCS3B01G147700 chr3A 86.937 1133 125 12 1066 2191 106398322 106397206 0.000000e+00 1251.0
31 TraesCS3B01G147700 chr3A 93.248 311 12 4 2021 2322 106309127 106308817 1.790000e-122 449.0
32 TraesCS3B01G147700 chr3A 99.134 231 2 0 3038 3268 106307915 106307685 1.810000e-112 416.0
33 TraesCS3B01G147700 chr3A 88.644 317 19 8 2508 2809 106308228 106307914 1.430000e-98 370.0
34 TraesCS3B01G147700 chr3A 94.545 165 9 0 2344 2508 106308679 106308515 4.180000e-64 255.0
35 TraesCS3B01G147700 chr3A 96.970 132 4 0 2911 3042 52198853 52198984 4.240000e-54 222.0
36 TraesCS3B01G147700 chr3A 94.245 139 7 1 2903 3041 644809265 644809128 9.190000e-51 211.0
37 TraesCS3B01G147700 chr2D 89.832 954 63 12 16 936 567902015 567901063 0.000000e+00 1194.0
38 TraesCS3B01G147700 chr2D 79.412 238 28 10 2811 3040 136606708 136606484 7.310000e-32 148.0
39 TraesCS3B01G147700 chr1B 98.425 127 2 0 2914 3040 626226879 626227005 1.180000e-54 224.0
40 TraesCS3B01G147700 chr1B 71.395 423 102 16 1657 2068 334124074 334124488 3.470000e-15 93.5
41 TraesCS3B01G147700 chr1D 97.638 127 3 0 2914 3040 336626858 336626984 5.490000e-53 219.0
42 TraesCS3B01G147700 chr1A 96.241 133 5 0 2914 3046 529068239 529068371 5.490000e-53 219.0
43 TraesCS3B01G147700 chr1A 87.143 140 9 6 2801 2931 501025679 501025818 2.030000e-32 150.0
44 TraesCS3B01G147700 chr4A 86.076 79 11 0 1890 1968 2780342 2780264 5.810000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G147700 chr3B 139036699 139039966 3267 True 6035.0 6035 100.00000 1 3268 1 chr3B.!!$R1 3267
1 TraesCS3B01G147700 chr3B 544824124 544824961 837 True 1328.0 1328 95.24900 1 841 1 chr3B.!!$R3 840
2 TraesCS3B01G147700 chr3B 139195445 139196564 1119 True 1245.0 1245 86.75400 1058 2191 1 chr3B.!!$R2 1133
3 TraesCS3B01G147700 chr5B 13386435 13387389 954 False 1448.0 1448 94.46200 1 931 1 chr5B.!!$F1 930
4 TraesCS3B01G147700 chr6B 52818059 52819011 952 False 1443.0 1443 94.43900 1 927 1 chr6B.!!$F1 926
5 TraesCS3B01G147700 chr4B 96633365 96634316 951 False 1441.0 1441 94.43900 1 927 1 chr4B.!!$F1 926
6 TraesCS3B01G147700 chr2B 530103526 530104459 933 True 1349.0 1349 92.92500 1 928 1 chr2B.!!$R2 927
7 TraesCS3B01G147700 chrUn 35418538 35419489 951 False 1310.0 1310 91.93700 1 928 1 chrUn.!!$F1 927
8 TraesCS3B01G147700 chrUn 339419725 339422529 2804 True 204.0 204 83.05800 2809 3040 2 chrUn.!!$R2 231
9 TraesCS3B01G147700 chr3D 89627219 89628282 1063 True 1288.0 1288 88.74700 1418 2486 1 chr3D.!!$R2 1068
10 TraesCS3B01G147700 chr3D 89638086 89639210 1124 True 1260.0 1260 86.95300 1058 2191 1 chr3D.!!$R3 1133
11 TraesCS3B01G147700 chr3D 37548270 37549219 949 True 1227.0 1227 90.38700 1 930 1 chr3D.!!$R1 929
12 TraesCS3B01G147700 chr3D 89545552 89547807 2255 True 389.6 721 90.96200 1183 3268 5 chr3D.!!$R4 2085
13 TraesCS3B01G147700 chr5D 438179724 438180674 950 False 1286.0 1286 91.58800 16 936 1 chr5D.!!$F2 920
14 TraesCS3B01G147700 chr5D 444479201 444480128 927 False 1280.0 1280 92.13400 29 924 1 chr5D.!!$F3 895
15 TraesCS3B01G147700 chr7B 616750372 616751304 932 True 1277.0 1277 91.46500 1 936 1 chr7B.!!$R1 935
16 TraesCS3B01G147700 chr3A 106397206 106398322 1116 True 1251.0 1251 86.93700 1066 2191 1 chr3A.!!$R1 1125
17 TraesCS3B01G147700 chr3A 106307685 106309127 1442 True 372.5 449 93.89275 2021 3268 4 chr3A.!!$R3 1247
18 TraesCS3B01G147700 chr2D 567901063 567902015 952 True 1194.0 1194 89.83200 16 936 1 chr2D.!!$R2 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 144 0.038526 AAATGTCGCCTTCGTCGTCT 60.039 50.0 0.00 0.00 36.96 4.18 F
991 1037 0.318762 GTGACTCCACTCCACTCCAC 59.681 60.0 0.00 0.00 40.10 4.02 F
1038 1084 0.039978 CTCTGCACGGCGATAGGTAG 60.040 60.0 16.62 9.03 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1065 0.039978 CTACCTATCGCCGTGCAGAG 60.040 60.0 0.00 0.00 0.00 3.35 R
2219 2853 0.030908 GCACTACCGGTAGCTAGCAG 59.969 60.0 36.20 21.19 36.66 4.24 R
2721 3789 0.614415 AATTCAAATCCTGCCGGCCA 60.614 50.0 26.77 11.42 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 130 1.207390 TGCTGCAACAAAAATGTCGC 58.793 45.000 0.00 0.00 0.00 5.19
138 144 0.038526 AAATGTCGCCTTCGTCGTCT 60.039 50.000 0.00 0.00 36.96 4.18
364 372 2.676076 GTTCGGTTGCAGCAAAATCAT 58.324 42.857 10.11 0.00 0.00 2.45
569 577 1.429930 TTGCAACTCTCCCAGTACCA 58.570 50.000 0.00 0.00 32.30 3.25
876 922 3.350612 CCCGCGCGTGAAAAAGGA 61.351 61.111 29.95 0.00 0.00 3.36
936 982 6.156519 GCCCAAACACTTACCAAATAGAAAG 58.843 40.000 0.00 0.00 0.00 2.62
937 983 6.687604 CCCAAACACTTACCAAATAGAAAGG 58.312 40.000 0.00 0.00 0.00 3.11
938 984 6.156519 CCAAACACTTACCAAATAGAAAGGC 58.843 40.000 0.00 0.00 0.00 4.35
939 985 6.015434 CCAAACACTTACCAAATAGAAAGGCT 60.015 38.462 0.00 0.00 0.00 4.58
940 986 6.819397 AACACTTACCAAATAGAAAGGCTC 57.181 37.500 0.00 0.00 0.00 4.70
941 987 4.935808 ACACTTACCAAATAGAAAGGCTCG 59.064 41.667 0.00 0.00 0.00 5.03
942 988 4.935808 CACTTACCAAATAGAAAGGCTCGT 59.064 41.667 0.00 0.00 0.00 4.18
943 989 5.063564 CACTTACCAAATAGAAAGGCTCGTC 59.936 44.000 0.00 0.00 0.00 4.20
944 990 2.987232 ACCAAATAGAAAGGCTCGTCC 58.013 47.619 0.00 0.00 0.00 4.79
946 992 3.198872 CCAAATAGAAAGGCTCGTCCTC 58.801 50.000 0.00 0.00 46.94 3.71
947 993 2.860735 CAAATAGAAAGGCTCGTCCTCG 59.139 50.000 0.00 0.00 46.94 4.63
948 994 1.765230 ATAGAAAGGCTCGTCCTCGT 58.235 50.000 0.00 0.00 46.94 4.18
949 995 0.809385 TAGAAAGGCTCGTCCTCGTG 59.191 55.000 0.00 0.00 46.94 4.35
950 996 1.179814 AGAAAGGCTCGTCCTCGTGT 61.180 55.000 0.00 0.00 46.94 4.49
951 997 0.319641 GAAAGGCTCGTCCTCGTGTT 60.320 55.000 0.00 0.00 46.94 3.32
952 998 0.319641 AAAGGCTCGTCCTCGTGTTC 60.320 55.000 0.00 0.00 46.94 3.18
953 999 2.126031 GGCTCGTCCTCGTGTTCC 60.126 66.667 0.00 0.00 38.33 3.62
954 1000 2.126031 GCTCGTCCTCGTGTTCCC 60.126 66.667 0.00 0.00 38.33 3.97
955 1001 2.572284 CTCGTCCTCGTGTTCCCC 59.428 66.667 0.00 0.00 38.33 4.81
956 1002 1.977544 CTCGTCCTCGTGTTCCCCT 60.978 63.158 0.00 0.00 38.33 4.79
957 1003 1.935327 CTCGTCCTCGTGTTCCCCTC 61.935 65.000 0.00 0.00 38.33 4.30
958 1004 2.979649 GTCCTCGTGTTCCCCTCC 59.020 66.667 0.00 0.00 0.00 4.30
959 1005 1.609794 GTCCTCGTGTTCCCCTCCT 60.610 63.158 0.00 0.00 0.00 3.69
960 1006 1.609501 TCCTCGTGTTCCCCTCCTG 60.610 63.158 0.00 0.00 0.00 3.86
961 1007 2.266055 CTCGTGTTCCCCTCCTGC 59.734 66.667 0.00 0.00 0.00 4.85
962 1008 3.316573 CTCGTGTTCCCCTCCTGCC 62.317 68.421 0.00 0.00 0.00 4.85
963 1009 4.410400 CGTGTTCCCCTCCTGCCC 62.410 72.222 0.00 0.00 0.00 5.36
964 1010 3.256960 GTGTTCCCCTCCTGCCCA 61.257 66.667 0.00 0.00 0.00 5.36
965 1011 2.935481 TGTTCCCCTCCTGCCCAG 60.935 66.667 0.00 0.00 0.00 4.45
966 1012 4.432741 GTTCCCCTCCTGCCCAGC 62.433 72.222 0.00 0.00 0.00 4.85
972 1018 4.421515 CTCCTGCCCAGCCACCAG 62.422 72.222 0.00 0.00 0.00 4.00
975 1021 3.957586 CTGCCCAGCCACCAGTGA 61.958 66.667 0.00 0.00 0.00 3.41
976 1022 4.269523 TGCCCAGCCACCAGTGAC 62.270 66.667 0.00 0.00 0.00 3.67
977 1023 3.958860 GCCCAGCCACCAGTGACT 61.959 66.667 0.00 0.00 0.00 3.41
978 1024 2.348998 CCCAGCCACCAGTGACTC 59.651 66.667 0.00 0.00 0.00 3.36
979 1025 2.348998 CCAGCCACCAGTGACTCC 59.651 66.667 0.00 0.00 0.00 3.85
980 1026 2.519622 CCAGCCACCAGTGACTCCA 61.520 63.158 0.00 0.00 0.00 3.86
981 1027 1.302033 CAGCCACCAGTGACTCCAC 60.302 63.158 0.00 0.00 43.50 4.02
990 1036 2.746697 GTGACTCCACTCCACTCCA 58.253 57.895 0.00 0.00 40.10 3.86
991 1037 0.318762 GTGACTCCACTCCACTCCAC 59.681 60.000 0.00 0.00 40.10 4.02
992 1038 0.832135 TGACTCCACTCCACTCCACC 60.832 60.000 0.00 0.00 0.00 4.61
993 1039 1.878656 GACTCCACTCCACTCCACCG 61.879 65.000 0.00 0.00 0.00 4.94
994 1040 2.603473 TCCACTCCACTCCACCGG 60.603 66.667 0.00 0.00 0.00 5.28
995 1041 2.923035 CCACTCCACTCCACCGGT 60.923 66.667 0.00 0.00 0.00 5.28
996 1042 2.657237 CACTCCACTCCACCGGTC 59.343 66.667 2.59 0.00 0.00 4.79
997 1043 2.603776 ACTCCACTCCACCGGTCC 60.604 66.667 2.59 0.00 0.00 4.46
998 1044 2.603473 CTCCACTCCACCGGTCCA 60.603 66.667 2.59 0.00 0.00 4.02
999 1045 1.990060 CTCCACTCCACCGGTCCAT 60.990 63.158 2.59 0.00 0.00 3.41
1000 1046 1.961180 CTCCACTCCACCGGTCCATC 61.961 65.000 2.59 0.00 0.00 3.51
1001 1047 2.584608 CACTCCACCGGTCCATCC 59.415 66.667 2.59 0.00 0.00 3.51
1002 1048 2.687566 ACTCCACCGGTCCATCCC 60.688 66.667 2.59 0.00 0.00 3.85
1003 1049 3.480133 CTCCACCGGTCCATCCCC 61.480 72.222 2.59 0.00 0.00 4.81
1018 1064 4.856801 CCCGCCGGATCCCACAAG 62.857 72.222 5.05 0.00 0.00 3.16
1020 1066 4.473520 CGCCGGATCCCACAAGCT 62.474 66.667 5.05 0.00 0.00 3.74
1021 1067 2.514824 GCCGGATCCCACAAGCTC 60.515 66.667 5.05 0.00 0.00 4.09
1022 1068 3.036429 GCCGGATCCCACAAGCTCT 62.036 63.158 5.05 0.00 0.00 4.09
1023 1069 1.153289 CCGGATCCCACAAGCTCTG 60.153 63.158 6.06 0.00 0.00 3.35
1024 1070 1.817099 CGGATCCCACAAGCTCTGC 60.817 63.158 6.06 0.00 0.00 4.26
1025 1071 1.300963 GGATCCCACAAGCTCTGCA 59.699 57.895 0.00 0.00 0.00 4.41
1026 1072 1.028868 GGATCCCACAAGCTCTGCAC 61.029 60.000 0.00 0.00 0.00 4.57
1027 1073 1.364626 GATCCCACAAGCTCTGCACG 61.365 60.000 0.00 0.00 0.00 5.34
1028 1074 2.809861 ATCCCACAAGCTCTGCACGG 62.810 60.000 0.00 0.00 0.00 4.94
1029 1075 3.730761 CCACAAGCTCTGCACGGC 61.731 66.667 0.00 0.00 0.00 5.68
1030 1076 4.081030 CACAAGCTCTGCACGGCG 62.081 66.667 4.80 4.80 0.00 6.46
1031 1077 4.299547 ACAAGCTCTGCACGGCGA 62.300 61.111 16.62 0.00 0.00 5.54
1032 1078 2.816958 CAAGCTCTGCACGGCGAT 60.817 61.111 16.62 0.00 0.00 4.58
1033 1079 1.519234 CAAGCTCTGCACGGCGATA 60.519 57.895 16.62 0.00 0.00 2.92
1034 1080 1.227089 AAGCTCTGCACGGCGATAG 60.227 57.895 16.62 8.73 0.00 2.08
1035 1081 2.635229 AAGCTCTGCACGGCGATAGG 62.635 60.000 16.62 0.49 0.00 2.57
1036 1082 2.808315 CTCTGCACGGCGATAGGT 59.192 61.111 16.62 0.00 0.00 3.08
1037 1083 2.030551 CTCTGCACGGCGATAGGTA 58.969 57.895 16.62 0.00 0.00 3.08
1038 1084 0.039978 CTCTGCACGGCGATAGGTAG 60.040 60.000 16.62 9.03 0.00 3.18
1039 1085 1.661821 CTGCACGGCGATAGGTAGC 60.662 63.158 16.62 6.19 0.00 3.58
1040 1086 2.729862 GCACGGCGATAGGTAGCG 60.730 66.667 16.62 0.00 38.26 4.26
1041 1087 3.028130 CACGGCGATAGGTAGCGA 58.972 61.111 16.62 0.00 37.25 4.93
1042 1088 1.370172 CACGGCGATAGGTAGCGAC 60.370 63.158 16.62 0.00 40.23 5.19
1043 1089 2.254651 CGGCGATAGGTAGCGACC 59.745 66.667 8.12 8.12 40.60 4.79
1051 1097 3.782042 GGTAGCGACCAAGCTTCG 58.218 61.111 11.60 0.00 46.80 3.79
1056 1102 2.357517 CGACCAAGCTTCGCCTGT 60.358 61.111 0.00 0.00 0.00 4.00
1062 1108 1.406069 CCAAGCTTCGCCTGTGATACT 60.406 52.381 0.00 0.00 0.00 2.12
1076 1122 0.747255 GATACTCAAGAGGCTCGCCA 59.253 55.000 9.22 0.00 38.92 5.69
1077 1123 1.342819 GATACTCAAGAGGCTCGCCAT 59.657 52.381 9.22 0.00 38.92 4.40
1078 1124 0.461548 TACTCAAGAGGCTCGCCATG 59.538 55.000 9.22 7.50 38.92 3.66
1079 1125 1.220206 CTCAAGAGGCTCGCCATGT 59.780 57.895 9.22 0.00 38.92 3.21
1080 1126 0.809241 CTCAAGAGGCTCGCCATGTC 60.809 60.000 9.22 0.00 38.92 3.06
1081 1127 1.817099 CAAGAGGCTCGCCATGTCC 60.817 63.158 9.22 0.00 38.92 4.02
1082 1128 3.376935 AAGAGGCTCGCCATGTCCG 62.377 63.158 9.22 0.00 38.92 4.79
1151 1200 0.041135 GAAGATCGACGGCTACTCGG 60.041 60.000 0.00 0.00 0.00 4.63
1160 1209 1.874345 CGGCTACTCGGTCACCAAGT 61.874 60.000 0.00 0.00 0.00 3.16
1161 1210 0.320697 GGCTACTCGGTCACCAAGTT 59.679 55.000 0.00 0.00 0.00 2.66
1162 1211 1.270678 GGCTACTCGGTCACCAAGTTT 60.271 52.381 0.00 0.00 0.00 2.66
1163 1212 1.798813 GCTACTCGGTCACCAAGTTTG 59.201 52.381 0.00 0.00 0.00 2.93
1168 1217 1.515521 CGGTCACCAAGTTTGCCCTC 61.516 60.000 0.00 0.00 0.00 4.30
1171 1220 1.153756 CACCAAGTTTGCCCTCCCT 59.846 57.895 0.00 0.00 0.00 4.20
1173 1222 1.154430 ACCAAGTTTGCCCTCCCTAA 58.846 50.000 0.00 0.00 0.00 2.69
1333 1388 3.022287 CGTGCGCAAGTCCAGTTT 58.978 55.556 14.00 0.00 41.68 2.66
1340 1395 1.856802 GCAAGTCCAGTTTGGCTTTG 58.143 50.000 6.90 6.90 37.47 2.77
1350 1405 3.147132 TGGCTTTGAGGCAGACGA 58.853 55.556 0.00 0.00 46.47 4.20
1351 1406 1.004560 TGGCTTTGAGGCAGACGAG 60.005 57.895 0.00 0.00 46.47 4.18
1352 1407 1.743252 GGCTTTGAGGCAGACGAGG 60.743 63.158 0.00 0.00 40.97 4.63
1353 1408 1.293498 GCTTTGAGGCAGACGAGGA 59.707 57.895 0.00 0.00 0.00 3.71
1360 1427 1.208293 GAGGCAGACGAGGAGGAAAAT 59.792 52.381 0.00 0.00 0.00 1.82
1365 1432 3.198872 CAGACGAGGAGGAAAATAAGCC 58.801 50.000 0.00 0.00 0.00 4.35
1366 1433 3.108376 AGACGAGGAGGAAAATAAGCCT 58.892 45.455 0.00 0.00 37.18 4.58
1387 1454 1.738700 GCGCTCTCCTTTCTCAAGAGG 60.739 57.143 0.00 0.00 37.58 3.69
1388 1455 1.738700 CGCTCTCCTTTCTCAAGAGGC 60.739 57.143 0.00 0.00 37.58 4.70
1393 1460 1.553690 CCTTTCTCAAGAGGCGGGGA 61.554 60.000 0.00 0.00 30.57 4.81
1495 1562 1.286257 AGAAAGGCCCTGGAGAAATCC 59.714 52.381 0.00 0.00 0.00 3.01
1513 1580 1.550524 TCCAACCATCTCAAGGACGAG 59.449 52.381 0.00 0.00 0.00 4.18
1565 1632 3.509137 AACGAGTTCCGCGCCAAGA 62.509 57.895 0.00 0.00 43.32 3.02
2084 2709 1.301401 CCGAAGAACCTGACGGCAA 60.301 57.895 0.00 0.00 38.98 4.52
2168 2793 4.680237 CCAAGTGCTCGGCCGACA 62.680 66.667 27.28 23.66 0.00 4.35
2199 2824 3.069300 CAGTGATGGTTGATCGATCCTCT 59.931 47.826 22.31 9.00 33.17 3.69
2219 2853 5.638657 CCTCTGATGCTCACTAATTATGCTC 59.361 44.000 0.00 0.00 0.00 4.26
2302 2955 3.865745 GGAACCATCACATTACGTCTCTG 59.134 47.826 0.00 0.00 0.00 3.35
2322 2975 5.624159 TCTGCTAATATGGTAAGCATGCTT 58.376 37.500 33.70 33.70 44.69 3.91
2323 2976 6.768483 TCTGCTAATATGGTAAGCATGCTTA 58.232 36.000 31.53 31.53 44.69 3.09
2345 3027 8.454106 GCTTACCATATTATGTCTGGCATTTAG 58.546 37.037 0.00 0.00 38.94 1.85
2434 3211 5.598005 TGCAAATTAATCAGTAATGGAGGGG 59.402 40.000 0.00 0.00 32.47 4.79
2525 3591 3.201487 TGTTCAGGATGCATCTTCCATCT 59.799 43.478 25.28 10.56 39.19 2.90
2537 3603 5.539979 CATCTTCCATCTATCACTGTCCAG 58.460 45.833 0.00 0.00 0.00 3.86
2568 3634 9.414295 ACATGCATATTGATTTTGAATTATCCG 57.586 29.630 0.00 0.00 0.00 4.18
2582 3648 9.734620 TTTGAATTATCCGAAGCTATGATTTTG 57.265 29.630 0.00 0.00 0.00 2.44
2633 3701 6.017770 TCCGTTATCTAACAAAACACAACCAG 60.018 38.462 1.41 0.00 35.99 4.00
2635 3703 3.684103 TCTAACAAAACACAACCAGCG 57.316 42.857 0.00 0.00 0.00 5.18
2638 3706 2.271821 ACAAAACACAACCAGCGAAC 57.728 45.000 0.00 0.00 0.00 3.95
2643 3711 2.319136 ACACAACCAGCGAACACTTA 57.681 45.000 0.00 0.00 0.00 2.24
2676 3744 8.496707 GTCCTTAAAAGACGGATAAAATACCA 57.503 34.615 0.00 0.00 0.00 3.25
2683 3751 5.741011 AGACGGATAAAATACCAGCTGAAA 58.259 37.500 17.39 2.32 0.00 2.69
2704 3772 5.425196 AAGGGAATAGTAAACGTTAGCCA 57.575 39.130 0.00 0.00 0.00 4.75
2721 3789 6.073765 CGTTAGCCACTGATAAAATAATCGCT 60.074 38.462 0.00 0.00 0.00 4.93
2740 3808 0.614415 TGGCCGGCAGGATTTGAATT 60.614 50.000 30.85 0.00 41.02 2.17
2754 3822 6.015095 AGGATTTGAATTTGACCTGAAGGAAC 60.015 38.462 2.62 0.00 38.94 3.62
2755 3823 6.239289 GGATTTGAATTTGACCTGAAGGAACA 60.239 38.462 2.62 0.36 38.94 3.18
2756 3824 6.537453 TTTGAATTTGACCTGAAGGAACAA 57.463 33.333 2.62 6.51 38.94 2.83
2757 3825 5.772825 TGAATTTGACCTGAAGGAACAAG 57.227 39.130 2.62 0.00 36.82 3.16
2758 3826 4.584325 TGAATTTGACCTGAAGGAACAAGG 59.416 41.667 2.62 0.00 36.82 3.61
2759 3827 2.656947 TTGACCTGAAGGAACAAGGG 57.343 50.000 2.62 0.00 38.94 3.95
2760 3828 0.110486 TGACCTGAAGGAACAAGGGC 59.890 55.000 2.62 0.00 38.94 5.19
2761 3829 0.110486 GACCTGAAGGAACAAGGGCA 59.890 55.000 2.62 0.00 38.94 5.36
2762 3830 0.779997 ACCTGAAGGAACAAGGGCAT 59.220 50.000 2.62 0.00 38.94 4.40
2781 3862 4.176271 GCATGCATAAAAGAAACCCACTC 58.824 43.478 14.21 0.00 0.00 3.51
2816 3897 2.338785 GCTTGGCTTGTGCTCCCTC 61.339 63.158 0.00 0.00 39.59 4.30
2821 3902 1.600916 GCTTGTGCTCCCTCCGTTT 60.601 57.895 0.00 0.00 36.03 3.60
2830 3911 5.123936 GTGCTCCCTCCGTTTCTAAATATT 58.876 41.667 0.00 0.00 0.00 1.28
2831 3912 5.589050 GTGCTCCCTCCGTTTCTAAATATTT 59.411 40.000 5.89 5.89 0.00 1.40
2834 3915 6.238402 GCTCCCTCCGTTTCTAAATATTTGTC 60.238 42.308 11.05 0.00 0.00 3.18
2855 3936 9.447157 TTTGTCTTTTTGGATTTCAAATGAACT 57.553 25.926 0.00 0.00 43.95 3.01
2956 6610 9.787532 AATACTTGTCATCAAAATGGATAAACG 57.212 29.630 0.00 0.00 33.42 3.60
2958 6612 6.432783 ACTTGTCATCAAAATGGATAAACGGA 59.567 34.615 0.00 0.00 33.42 4.69
2961 6615 6.093495 TGTCATCAAAATGGATAAACGGAGAC 59.907 38.462 0.00 0.00 33.42 3.36
3233 6887 2.512745 TAATTGCCGTGGCGCGAT 60.513 55.556 23.75 4.46 45.51 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 130 0.728466 GTGACCGAAGACGACGAAGG 60.728 60.000 0.00 0.00 42.66 3.46
138 144 4.047059 GACCGAGGCGTGACCGAA 62.047 66.667 0.00 0.00 46.52 4.30
165 171 2.442458 ATTCATGCGGCCATGGCA 60.442 55.556 36.56 18.54 47.00 4.92
184 191 3.544651 CGTCTGTGTGTTTTGCTACATG 58.455 45.455 0.00 0.00 0.00 3.21
364 372 2.490148 CGGCCATGGCGTCTCTCTA 61.490 63.158 29.90 0.00 46.33 2.43
569 577 4.021925 GGGAGGAGCTGCAACCGT 62.022 66.667 8.35 0.00 0.00 4.83
836 864 3.194062 CACGCTTGACCCAAACATTTTT 58.806 40.909 0.00 0.00 0.00 1.94
837 865 2.167487 ACACGCTTGACCCAAACATTTT 59.833 40.909 0.00 0.00 0.00 1.82
838 866 1.754226 ACACGCTTGACCCAAACATTT 59.246 42.857 0.00 0.00 0.00 2.32
839 867 1.336755 GACACGCTTGACCCAAACATT 59.663 47.619 0.00 0.00 0.00 2.71
840 868 0.951558 GACACGCTTGACCCAAACAT 59.048 50.000 0.00 0.00 0.00 2.71
841 869 1.098712 GGACACGCTTGACCCAAACA 61.099 55.000 0.00 0.00 31.90 2.83
936 982 2.126031 GGAACACGAGGACGAGCC 60.126 66.667 0.00 0.00 42.66 4.70
937 983 2.126031 GGGAACACGAGGACGAGC 60.126 66.667 0.00 0.00 42.66 5.03
938 984 1.935327 GAGGGGAACACGAGGACGAG 61.935 65.000 0.00 0.00 42.66 4.18
939 985 1.975407 GAGGGGAACACGAGGACGA 60.975 63.158 0.00 0.00 42.66 4.20
940 986 2.572284 GAGGGGAACACGAGGACG 59.428 66.667 0.00 0.00 45.75 4.79
941 987 1.609794 AGGAGGGGAACACGAGGAC 60.610 63.158 0.00 0.00 0.00 3.85
942 988 1.609501 CAGGAGGGGAACACGAGGA 60.610 63.158 0.00 0.00 0.00 3.71
943 989 2.982130 CAGGAGGGGAACACGAGG 59.018 66.667 0.00 0.00 0.00 4.63
944 990 2.266055 GCAGGAGGGGAACACGAG 59.734 66.667 0.00 0.00 0.00 4.18
945 991 3.319198 GGCAGGAGGGGAACACGA 61.319 66.667 0.00 0.00 0.00 4.35
946 992 4.410400 GGGCAGGAGGGGAACACG 62.410 72.222 0.00 0.00 0.00 4.49
947 993 3.256960 TGGGCAGGAGGGGAACAC 61.257 66.667 0.00 0.00 0.00 3.32
948 994 2.935481 CTGGGCAGGAGGGGAACA 60.935 66.667 0.00 0.00 0.00 3.18
949 995 4.432741 GCTGGGCAGGAGGGGAAC 62.433 72.222 0.00 0.00 0.00 3.62
955 1001 4.421515 CTGGTGGCTGGGCAGGAG 62.422 72.222 0.00 0.00 0.00 3.69
958 1004 3.957586 TCACTGGTGGCTGGGCAG 61.958 66.667 0.00 0.00 0.00 4.85
959 1005 4.269523 GTCACTGGTGGCTGGGCA 62.270 66.667 0.00 0.00 31.34 5.36
960 1006 3.909086 GAGTCACTGGTGGCTGGGC 62.909 68.421 12.75 0.00 46.90 5.36
961 1007 2.348998 GAGTCACTGGTGGCTGGG 59.651 66.667 12.75 0.00 46.90 4.45
962 1008 2.348998 GGAGTCACTGGTGGCTGG 59.651 66.667 12.75 0.00 46.90 4.85
963 1009 1.302033 GTGGAGTCACTGGTGGCTG 60.302 63.158 12.75 0.00 46.90 4.85
972 1018 0.318762 GTGGAGTGGAGTGGAGTCAC 59.681 60.000 0.00 0.00 43.93 3.67
973 1019 0.832135 GGTGGAGTGGAGTGGAGTCA 60.832 60.000 0.00 0.00 0.00 3.41
974 1020 1.878656 CGGTGGAGTGGAGTGGAGTC 61.879 65.000 0.00 0.00 0.00 3.36
975 1021 1.908793 CGGTGGAGTGGAGTGGAGT 60.909 63.158 0.00 0.00 0.00 3.85
976 1022 2.650116 CCGGTGGAGTGGAGTGGAG 61.650 68.421 0.00 0.00 0.00 3.86
977 1023 2.603473 CCGGTGGAGTGGAGTGGA 60.603 66.667 0.00 0.00 0.00 4.02
978 1024 2.923035 ACCGGTGGAGTGGAGTGG 60.923 66.667 6.12 0.00 0.00 4.00
979 1025 2.657237 GACCGGTGGAGTGGAGTG 59.343 66.667 14.63 0.00 0.00 3.51
980 1026 2.603776 GGACCGGTGGAGTGGAGT 60.604 66.667 14.63 0.00 0.00 3.85
981 1027 1.961180 GATGGACCGGTGGAGTGGAG 61.961 65.000 14.63 0.00 0.00 3.86
982 1028 1.987855 GATGGACCGGTGGAGTGGA 60.988 63.158 14.63 0.00 0.00 4.02
983 1029 2.584608 GATGGACCGGTGGAGTGG 59.415 66.667 14.63 0.00 0.00 4.00
984 1030 2.584608 GGATGGACCGGTGGAGTG 59.415 66.667 14.63 0.00 0.00 3.51
985 1031 2.687566 GGGATGGACCGGTGGAGT 60.688 66.667 14.63 0.00 40.11 3.85
986 1032 3.480133 GGGGATGGACCGGTGGAG 61.480 72.222 14.63 0.00 40.11 3.86
1001 1047 4.856801 CTTGTGGGATCCGGCGGG 62.857 72.222 27.98 7.65 0.00 6.13
1003 1049 4.473520 AGCTTGTGGGATCCGGCG 62.474 66.667 5.45 0.00 0.00 6.46
1004 1050 2.514824 GAGCTTGTGGGATCCGGC 60.515 66.667 5.45 5.03 0.00 6.13
1005 1051 1.153289 CAGAGCTTGTGGGATCCGG 60.153 63.158 5.45 0.00 0.00 5.14
1006 1052 1.817099 GCAGAGCTTGTGGGATCCG 60.817 63.158 5.45 0.00 0.00 4.18
1007 1053 1.028868 GTGCAGAGCTTGTGGGATCC 61.029 60.000 1.92 1.92 0.00 3.36
1008 1054 1.364626 CGTGCAGAGCTTGTGGGATC 61.365 60.000 0.00 0.00 0.00 3.36
1009 1055 1.376424 CGTGCAGAGCTTGTGGGAT 60.376 57.895 0.00 0.00 0.00 3.85
1010 1056 2.031012 CGTGCAGAGCTTGTGGGA 59.969 61.111 0.00 0.00 0.00 4.37
1011 1057 3.052082 CCGTGCAGAGCTTGTGGG 61.052 66.667 0.00 0.00 0.00 4.61
1012 1058 3.730761 GCCGTGCAGAGCTTGTGG 61.731 66.667 0.60 0.00 0.00 4.17
1013 1059 4.081030 CGCCGTGCAGAGCTTGTG 62.081 66.667 6.35 0.00 0.00 3.33
1014 1060 2.225791 TATCGCCGTGCAGAGCTTGT 62.226 55.000 6.35 0.00 0.00 3.16
1015 1061 1.485838 CTATCGCCGTGCAGAGCTTG 61.486 60.000 6.35 0.00 0.00 4.01
1016 1062 1.227089 CTATCGCCGTGCAGAGCTT 60.227 57.895 6.35 0.00 0.00 3.74
1017 1063 2.415010 CTATCGCCGTGCAGAGCT 59.585 61.111 6.35 0.00 0.00 4.09
1018 1064 2.071844 TACCTATCGCCGTGCAGAGC 62.072 60.000 0.00 0.00 0.00 4.09
1019 1065 0.039978 CTACCTATCGCCGTGCAGAG 60.040 60.000 0.00 0.00 0.00 3.35
1020 1066 2.030551 CTACCTATCGCCGTGCAGA 58.969 57.895 0.00 0.00 0.00 4.26
1021 1067 1.661821 GCTACCTATCGCCGTGCAG 60.662 63.158 0.00 0.00 0.00 4.41
1022 1068 2.415843 GCTACCTATCGCCGTGCA 59.584 61.111 0.00 0.00 0.00 4.57
1023 1069 2.729862 CGCTACCTATCGCCGTGC 60.730 66.667 0.00 0.00 0.00 5.34
1024 1070 1.370172 GTCGCTACCTATCGCCGTG 60.370 63.158 0.00 0.00 0.00 4.94
1025 1071 2.550101 GGTCGCTACCTATCGCCGT 61.550 63.158 0.00 0.00 43.08 5.68
1026 1072 2.067091 TTGGTCGCTACCTATCGCCG 62.067 60.000 9.09 0.00 46.91 6.46
1027 1073 0.318784 CTTGGTCGCTACCTATCGCC 60.319 60.000 9.09 0.00 46.91 5.54
1028 1074 0.940047 GCTTGGTCGCTACCTATCGC 60.940 60.000 9.09 0.00 46.91 4.58
1029 1075 0.669077 AGCTTGGTCGCTACCTATCG 59.331 55.000 9.09 0.00 46.91 2.92
1030 1076 2.745102 GAAGCTTGGTCGCTACCTATC 58.255 52.381 2.10 0.00 46.91 2.08
1031 1077 1.067212 CGAAGCTTGGTCGCTACCTAT 59.933 52.381 2.10 0.00 46.91 2.57
1032 1078 0.454600 CGAAGCTTGGTCGCTACCTA 59.545 55.000 2.10 0.00 46.91 3.08
1033 1079 1.215647 CGAAGCTTGGTCGCTACCT 59.784 57.895 2.10 0.00 46.91 3.08
1034 1080 3.782042 CGAAGCTTGGTCGCTACC 58.218 61.111 2.10 0.00 46.98 3.18
1044 1090 2.301577 GAGTATCACAGGCGAAGCTT 57.698 50.000 0.00 0.00 46.59 3.74
1055 1101 4.103769 TGGCGAGCCTCTTGAGTATCAC 62.104 54.545 15.75 0.00 40.55 3.06
1056 1102 1.959989 TGGCGAGCCTCTTGAGTATCA 60.960 52.381 15.75 0.00 39.53 2.15
1062 1108 1.219124 GACATGGCGAGCCTCTTGA 59.781 57.895 15.75 0.00 36.94 3.02
1076 1122 3.474570 GGAGGAGCCAGCGGACAT 61.475 66.667 0.00 0.00 36.34 3.06
1082 1128 4.959596 GATCGCGGAGGAGCCAGC 62.960 72.222 6.13 0.00 35.94 4.85
1085 1131 4.933064 CACGATCGCGGAGGAGCC 62.933 72.222 16.60 0.00 43.17 4.70
1116 1165 3.248446 TTCAGGTGGTAGTGCCCGC 62.248 63.158 0.00 0.00 36.04 6.13
1124 1173 1.100510 CCGTCGATCTTCAGGTGGTA 58.899 55.000 0.00 0.00 0.00 3.25
1151 1200 1.179174 GGGAGGGCAAACTTGGTGAC 61.179 60.000 0.00 0.00 0.00 3.67
1168 1217 4.818314 AGGCACTCTCCCTTAGGG 57.182 61.111 11.94 11.94 46.11 3.53
1177 1226 2.443634 GGTTGAGACCTGAGGCACTCT 61.444 57.143 20.95 8.50 46.98 3.24
1256 1305 1.702491 GAAATGTACCTCGCGGCCAC 61.702 60.000 6.13 0.00 0.00 5.01
1257 1306 1.448893 GAAATGTACCTCGCGGCCA 60.449 57.895 6.13 0.00 0.00 5.36
1259 1308 2.178235 GGGAAATGTACCTCGCGGC 61.178 63.158 6.13 0.00 0.00 6.53
1260 1309 0.529992 GAGGGAAATGTACCTCGCGG 60.530 60.000 6.13 0.00 43.37 6.46
1265 1314 2.197465 GAGGTGGAGGGAAATGTACCT 58.803 52.381 0.00 0.00 40.98 3.08
1268 1317 1.829222 GACGAGGTGGAGGGAAATGTA 59.171 52.381 0.00 0.00 0.00 2.29
1333 1388 1.004560 CTCGTCTGCCTCAAAGCCA 60.005 57.895 0.00 0.00 0.00 4.75
1340 1395 0.608640 TTTTCCTCCTCGTCTGCCTC 59.391 55.000 0.00 0.00 0.00 4.70
1345 1400 3.108376 AGGCTTATTTTCCTCCTCGTCT 58.892 45.455 0.00 0.00 0.00 4.18
1346 1401 3.198872 CAGGCTTATTTTCCTCCTCGTC 58.801 50.000 0.00 0.00 0.00 4.20
1347 1402 2.681097 GCAGGCTTATTTTCCTCCTCGT 60.681 50.000 0.00 0.00 0.00 4.18
1348 1403 1.943340 GCAGGCTTATTTTCCTCCTCG 59.057 52.381 0.00 0.00 0.00 4.63
1349 1404 1.943340 CGCAGGCTTATTTTCCTCCTC 59.057 52.381 0.00 0.00 0.00 3.71
1350 1405 2.019156 GCGCAGGCTTATTTTCCTCCT 61.019 52.381 0.30 0.00 35.83 3.69
1351 1406 0.382158 GCGCAGGCTTATTTTCCTCC 59.618 55.000 0.30 0.00 35.83 4.30
1352 1407 3.926289 GCGCAGGCTTATTTTCCTC 57.074 52.632 0.30 0.00 35.83 3.71
1365 1432 1.067283 TCTTGAGAAAGGAGAGCGCAG 60.067 52.381 11.47 0.00 0.00 5.18
1366 1433 0.969149 TCTTGAGAAAGGAGAGCGCA 59.031 50.000 11.47 0.00 0.00 6.09
1495 1562 2.611518 GACTCGTCCTTGAGATGGTTG 58.388 52.381 0.00 0.00 39.35 3.77
1720 1787 2.925170 AAGACTGGTGAGCGGGCT 60.925 61.111 0.00 0.00 0.00 5.19
1726 1793 2.091112 CGCGCTCAAGACTGGTGAG 61.091 63.158 5.56 0.46 44.48 3.51
1729 1796 3.288308 CTCCGCGCTCAAGACTGGT 62.288 63.158 5.56 0.00 0.00 4.00
1757 1824 2.818132 GGTGCTCTCCCTCATCGG 59.182 66.667 0.00 0.00 0.00 4.18
1784 1851 1.033746 ATGTCGGATACACGGACCGT 61.034 55.000 15.37 15.37 44.59 4.83
1792 1859 1.739667 CGCCTCCATGTCGGATACA 59.260 57.895 1.94 0.00 45.19 2.29
1795 1862 3.550431 CCCGCCTCCATGTCGGAT 61.550 66.667 12.53 0.00 45.19 4.18
1867 1934 0.461961 CGAATTCCTCTTCCTCCGCT 59.538 55.000 0.00 0.00 0.00 5.52
1873 1940 1.312815 CCATGGCGAATTCCTCTTCC 58.687 55.000 0.00 0.00 0.00 3.46
1923 1990 3.687321 TTGAGCCTCTCCATGCGGC 62.687 63.158 0.00 0.00 46.39 6.53
2168 2793 2.906389 TCAACCATCACTGAGCTTAGGT 59.094 45.455 10.64 0.00 0.00 3.08
2219 2853 0.030908 GCACTACCGGTAGCTAGCAG 59.969 60.000 36.20 21.19 36.66 4.24
2268 2913 1.141053 GATGGTTCCCAGCGATACCTT 59.859 52.381 0.00 0.00 36.75 3.50
2288 2941 6.216569 ACCATATTAGCAGAGACGTAATGTG 58.783 40.000 0.00 0.00 0.00 3.21
2323 2976 8.660435 ACTACTAAATGCCAGACATAATATGGT 58.340 33.333 5.16 0.00 42.21 3.55
2327 2980 8.836413 GCAAACTACTAAATGCCAGACATAATA 58.164 33.333 0.00 0.00 38.34 0.98
2328 2981 7.557719 AGCAAACTACTAAATGCCAGACATAAT 59.442 33.333 0.00 0.00 38.34 1.28
2330 2983 6.414732 AGCAAACTACTAAATGCCAGACATA 58.585 36.000 0.00 0.00 38.34 2.29
2331 2984 5.256474 AGCAAACTACTAAATGCCAGACAT 58.744 37.500 0.00 0.00 42.30 3.06
2332 2985 4.651778 AGCAAACTACTAAATGCCAGACA 58.348 39.130 0.00 0.00 39.59 3.41
2333 2986 5.048713 ACAAGCAAACTACTAAATGCCAGAC 60.049 40.000 0.00 0.00 39.59 3.51
2345 3027 7.306749 CCATTTTGAACATGACAAGCAAACTAC 60.307 37.037 0.00 0.00 0.00 2.73
2409 3182 6.239120 CCCCTCCATTACTGATTAATTTGCAG 60.239 42.308 2.02 2.02 35.81 4.41
2413 3186 8.067488 ACAATCCCCTCCATTACTGATTAATTT 58.933 33.333 0.00 0.00 0.00 1.82
2434 3211 5.220739 GCAATGTCACCTGATACTCACAATC 60.221 44.000 0.00 0.00 0.00 2.67
2568 3634 5.803967 CCTTTGCAGACAAAATCATAGCTTC 59.196 40.000 0.00 0.00 44.90 3.86
2582 3648 2.747855 CTCCCGGCCTTTGCAGAC 60.748 66.667 0.00 0.00 40.13 3.51
2664 3732 5.445964 TCCCTTTCAGCTGGTATTTTATCC 58.554 41.667 15.13 0.00 0.00 2.59
2665 3733 7.588497 ATTCCCTTTCAGCTGGTATTTTATC 57.412 36.000 15.13 0.00 0.00 1.75
2666 3734 8.282256 ACTATTCCCTTTCAGCTGGTATTTTAT 58.718 33.333 15.13 3.66 0.00 1.40
2667 3735 7.639378 ACTATTCCCTTTCAGCTGGTATTTTA 58.361 34.615 15.13 0.00 0.00 1.52
2668 3736 6.494059 ACTATTCCCTTTCAGCTGGTATTTT 58.506 36.000 15.13 0.00 0.00 1.82
2676 3744 5.161943 ACGTTTACTATTCCCTTTCAGCT 57.838 39.130 0.00 0.00 0.00 4.24
2683 3751 4.468868 AGTGGCTAACGTTTACTATTCCCT 59.531 41.667 5.91 0.00 0.00 4.20
2704 3772 3.498397 CGGCCAGCGATTATTTTATCAGT 59.502 43.478 2.24 0.00 0.00 3.41
2721 3789 0.614415 AATTCAAATCCTGCCGGCCA 60.614 50.000 26.77 11.42 0.00 5.36
2740 3808 1.478654 GCCCTTGTTCCTTCAGGTCAA 60.479 52.381 0.00 0.35 36.34 3.18
2754 3822 3.934579 GGTTTCTTTTATGCATGCCCTTG 59.065 43.478 16.68 0.68 0.00 3.61
2755 3823 3.055167 GGGTTTCTTTTATGCATGCCCTT 60.055 43.478 16.68 2.45 0.00 3.95
2756 3824 2.501316 GGGTTTCTTTTATGCATGCCCT 59.499 45.455 16.68 5.06 0.00 5.19
2757 3825 2.235898 TGGGTTTCTTTTATGCATGCCC 59.764 45.455 16.68 4.41 0.00 5.36
2758 3826 3.055891 AGTGGGTTTCTTTTATGCATGCC 60.056 43.478 16.68 0.00 0.00 4.40
2759 3827 4.176271 GAGTGGGTTTCTTTTATGCATGC 58.824 43.478 11.82 11.82 0.00 4.06
2760 3828 4.082787 ACGAGTGGGTTTCTTTTATGCATG 60.083 41.667 10.16 0.00 0.00 4.06
2761 3829 4.079253 ACGAGTGGGTTTCTTTTATGCAT 58.921 39.130 3.79 3.79 0.00 3.96
2762 3830 3.482436 ACGAGTGGGTTTCTTTTATGCA 58.518 40.909 0.00 0.00 0.00 3.96
2781 3862 1.086067 AGCGTGCCATGATCTCAACG 61.086 55.000 0.00 0.00 31.70 4.10
2807 3888 2.467566 TTTAGAAACGGAGGGAGCAC 57.532 50.000 0.00 0.00 0.00 4.40
2816 3897 9.685828 TCCAAAAAGACAAATATTTAGAAACGG 57.314 29.630 0.00 0.00 0.00 4.44
2884 6533 8.049117 AGCCAAATGAGTGAATCTACATTCTAA 58.951 33.333 0.00 0.00 39.49 2.10
2887 6536 6.690194 AGCCAAATGAGTGAATCTACATTC 57.310 37.500 0.00 0.00 39.24 2.67
2888 6537 6.435277 ACAAGCCAAATGAGTGAATCTACATT 59.565 34.615 0.00 0.00 34.99 2.71
2889 6538 5.948162 ACAAGCCAAATGAGTGAATCTACAT 59.052 36.000 0.00 0.00 0.00 2.29
2892 6541 6.711277 AGTACAAGCCAAATGAGTGAATCTA 58.289 36.000 0.00 0.00 0.00 1.98
2894 6543 5.163713 GGAGTACAAGCCAAATGAGTGAATC 60.164 44.000 0.00 0.00 0.00 2.52
2900 6549 3.274288 GAGGGAGTACAAGCCAAATGAG 58.726 50.000 0.00 0.00 0.00 2.90
3001 6655 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3243 6897 1.173913 AATAAACCGCAGCTGAACCC 58.826 50.000 20.43 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.