Multiple sequence alignment - TraesCS3B01G147000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G147000 chr3B 100.000 4716 0 0 1 4716 137321401 137326116 0.000000e+00 8709.0
1 TraesCS3B01G147000 chr3B 97.333 75 2 0 4200 4274 137325526 137325600 1.380000e-25 128.0
2 TraesCS3B01G147000 chr3B 97.333 75 2 0 4126 4200 137325600 137325674 1.380000e-25 128.0
3 TraesCS3B01G147000 chr3B 86.813 91 11 1 4614 4704 285272402 285272313 3.000000e-17 100.0
4 TraesCS3B01G147000 chr3A 94.317 3871 133 36 328 4140 104414140 104417981 0.000000e+00 5849.0
5 TraesCS3B01G147000 chr3A 80.315 254 11 10 4200 4445 104418012 104418234 6.320000e-34 156.0
6 TraesCS3B01G147000 chr3A 90.385 104 5 2 4102 4200 104417988 104418091 1.060000e-26 132.0
7 TraesCS3B01G147000 chr3D 95.148 2741 57 15 321 3019 87922969 87925675 0.000000e+00 4255.0
8 TraesCS3B01G147000 chr3D 94.146 837 32 5 3248 4083 87926160 87926980 0.000000e+00 1258.0
9 TraesCS3B01G147000 chr3D 98.370 184 3 0 3016 3199 87925796 87925979 1.640000e-84 324.0
10 TraesCS3B01G147000 chr3D 89.272 261 11 7 4200 4450 87927071 87927324 1.270000e-80 311.0
11 TraesCS3B01G147000 chr3D 92.157 204 15 1 2519 2722 16171631 16171833 2.150000e-73 287.0
12 TraesCS3B01G147000 chr3D 85.795 176 16 5 4446 4612 87928682 87928857 1.350000e-40 178.0
13 TraesCS3B01G147000 chr3D 89.320 103 6 2 4102 4199 87927047 87927149 1.780000e-24 124.0
14 TraesCS3B01G147000 chr3D 83.838 99 15 1 4447 4545 113572139 113572236 5.020000e-15 93.5
15 TraesCS3B01G147000 chr4B 88.803 259 25 4 1 257 646175911 646175655 9.850000e-82 315.0
16 TraesCS3B01G147000 chr4B 83.137 255 37 4 1 250 584096278 584096531 1.320000e-55 228.0
17 TraesCS3B01G147000 chr4B 81.618 272 40 9 1 266 312107674 312107941 2.860000e-52 217.0
18 TraesCS3B01G147000 chr4B 85.714 63 6 3 4656 4716 468660891 468660952 3.940000e-06 63.9
19 TraesCS3B01G147000 chr2B 88.123 261 26 5 1 259 589099351 589099094 5.930000e-79 305.0
20 TraesCS3B01G147000 chr2B 85.882 85 11 1 4621 4704 228577664 228577748 6.500000e-14 89.8
21 TraesCS3B01G147000 chr2B 94.444 36 2 0 232 267 183953903 183953868 6.590000e-04 56.5
22 TraesCS3B01G147000 chr6B 87.739 261 30 2 1 259 360385385 360385125 2.130000e-78 303.0
23 TraesCS3B01G147000 chr6B 87.692 260 27 4 1 256 372571140 372571398 9.920000e-77 298.0
24 TraesCS3B01G147000 chr6B 86.496 274 33 3 1 270 632317029 632316756 9.920000e-77 298.0
25 TraesCS3B01G147000 chr6B 85.859 99 14 0 4448 4546 566632254 566632156 6.450000e-19 106.0
26 TraesCS3B01G147000 chr6B 82.051 78 13 1 4627 4704 3867829 3867905 1.100000e-06 65.8
27 TraesCS3B01G147000 chr5B 85.765 281 33 7 1 277 179185977 179185700 1.660000e-74 291.0
28 TraesCS3B01G147000 chr5B 84.706 85 11 2 4621 4704 711047856 711047773 3.020000e-12 84.2
29 TraesCS3B01G147000 chr5B 100.000 31 0 0 4664 4694 110128547 110128517 1.830000e-04 58.4
30 TraesCS3B01G147000 chr7B 91.237 194 17 0 2521 2714 350930391 350930584 1.010000e-66 265.0
31 TraesCS3B01G147000 chr7B 91.489 47 3 1 4611 4656 226183011 226183057 3.940000e-06 63.9
32 TraesCS3B01G147000 chr2A 89.109 101 11 0 4446 4546 492460644 492460544 4.950000e-25 126.0
33 TraesCS3B01G147000 chr7D 89.000 100 10 1 4447 4545 467684286 467684385 6.410000e-24 122.0
34 TraesCS3B01G147000 chr2D 88.776 98 10 1 4450 4546 365356556 365356459 8.290000e-23 119.0
35 TraesCS3B01G147000 chr2D 85.263 95 14 0 4447 4541 365357183 365357277 1.080000e-16 99.0
36 TraesCS3B01G147000 chr5D 86.538 104 13 1 4446 4549 26473617 26473719 3.860000e-21 113.0
37 TraesCS3B01G147000 chr1D 86.735 98 13 0 4448 4545 491411578 491411675 4.990000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G147000 chr3B 137321401 137326116 4715 False 2988.333333 8709 98.2220 1 4716 3 chr3B.!!$F1 4715
1 TraesCS3B01G147000 chr3A 104414140 104418234 4094 False 2045.666667 5849 88.3390 328 4445 3 chr3A.!!$F1 4117
2 TraesCS3B01G147000 chr3D 87922969 87928857 5888 False 1075.000000 4255 92.0085 321 4612 6 chr3D.!!$F3 4291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.039527 GGTGGCAATGTGGTTCGAAC 60.040 55.0 20.14 20.14 0.00 3.95 F
200 201 0.108520 GCGGGTCCGTGTCTATTTCA 60.109 55.0 11.25 0.00 42.09 2.69 F
1271 1290 0.236449 GGTACGCAACAAACCCTTCG 59.764 55.0 0.00 0.00 0.00 3.79 F
2143 2200 2.420547 GGATTCCTCAGCTGCACATGTA 60.421 50.0 9.47 0.00 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1026 1045 0.318869 CATAATACGTACCGGCCGCA 60.319 55.000 22.85 6.60 0.00 5.69 R
1749 1806 2.242113 CAGTTGAGACCAGCTGCAC 58.758 57.895 8.66 4.11 43.01 4.57 R
2564 2627 0.593128 CTAGCACAAACCTGGCACAC 59.407 55.000 0.00 0.00 0.00 3.82 R
4032 4390 1.021202 CTCGGTGCTGTTTTGGTTCA 58.979 50.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.046023 TGCCGATGCAGAGGTTGG 60.046 61.111 11.30 0.00 44.23 3.77
20 21 2.268920 GCCGATGCAGAGGTTGGA 59.731 61.111 11.30 0.00 37.47 3.53
21 22 1.817099 GCCGATGCAGAGGTTGGAG 60.817 63.158 11.30 0.00 37.47 3.86
22 23 1.900351 CCGATGCAGAGGTTGGAGA 59.100 57.895 0.00 0.00 0.00 3.71
23 24 0.460987 CCGATGCAGAGGTTGGAGAC 60.461 60.000 0.00 0.00 0.00 3.36
24 25 0.803768 CGATGCAGAGGTTGGAGACG 60.804 60.000 0.00 0.00 0.00 4.18
25 26 0.532573 GATGCAGAGGTTGGAGACGA 59.467 55.000 0.00 0.00 0.00 4.20
26 27 0.247736 ATGCAGAGGTTGGAGACGAC 59.752 55.000 0.00 0.00 44.59 4.34
27 28 1.444553 GCAGAGGTTGGAGACGACG 60.445 63.158 0.00 0.00 46.42 5.12
28 29 1.863662 GCAGAGGTTGGAGACGACGA 61.864 60.000 0.00 0.00 46.42 4.20
29 30 0.169230 CAGAGGTTGGAGACGACGAG 59.831 60.000 0.00 0.00 46.42 4.18
30 31 0.961358 AGAGGTTGGAGACGACGAGG 60.961 60.000 0.00 0.00 46.42 4.63
31 32 1.935327 GAGGTTGGAGACGACGAGGG 61.935 65.000 0.00 0.00 46.42 4.30
32 33 1.975407 GGTTGGAGACGACGAGGGA 60.975 63.158 0.00 0.00 46.42 4.20
33 34 1.507174 GTTGGAGACGACGAGGGAG 59.493 63.158 0.00 0.00 34.37 4.30
34 35 1.677966 TTGGAGACGACGAGGGAGG 60.678 63.158 0.00 0.00 0.00 4.30
35 36 2.829458 GGAGACGACGAGGGAGGG 60.829 72.222 0.00 0.00 0.00 4.30
36 37 2.045143 GAGACGACGAGGGAGGGT 60.045 66.667 0.00 0.00 0.00 4.34
37 38 2.361357 AGACGACGAGGGAGGGTG 60.361 66.667 0.00 0.00 0.00 4.61
38 39 3.450115 GACGACGAGGGAGGGTGG 61.450 72.222 0.00 0.00 0.00 4.61
41 42 3.319198 GACGAGGGAGGGTGGCAA 61.319 66.667 0.00 0.00 0.00 4.52
42 43 2.610859 ACGAGGGAGGGTGGCAAT 60.611 61.111 0.00 0.00 0.00 3.56
43 44 2.124570 CGAGGGAGGGTGGCAATG 60.125 66.667 0.00 0.00 0.00 2.82
44 45 2.971598 CGAGGGAGGGTGGCAATGT 61.972 63.158 0.00 0.00 0.00 2.71
45 46 1.379044 GAGGGAGGGTGGCAATGTG 60.379 63.158 0.00 0.00 0.00 3.21
46 47 2.362889 GGGAGGGTGGCAATGTGG 60.363 66.667 0.00 0.00 0.00 4.17
47 48 2.440599 GGAGGGTGGCAATGTGGT 59.559 61.111 0.00 0.00 0.00 4.16
48 49 1.228862 GGAGGGTGGCAATGTGGTT 60.229 57.895 0.00 0.00 0.00 3.67
49 50 1.250840 GGAGGGTGGCAATGTGGTTC 61.251 60.000 0.00 0.00 0.00 3.62
50 51 1.586154 GAGGGTGGCAATGTGGTTCG 61.586 60.000 0.00 0.00 0.00 3.95
51 52 1.602323 GGGTGGCAATGTGGTTCGA 60.602 57.895 0.00 0.00 0.00 3.71
52 53 1.175983 GGGTGGCAATGTGGTTCGAA 61.176 55.000 0.00 0.00 0.00 3.71
53 54 0.039527 GGTGGCAATGTGGTTCGAAC 60.040 55.000 20.14 20.14 0.00 3.95
54 55 0.385473 GTGGCAATGTGGTTCGAACG 60.385 55.000 21.34 8.11 0.00 3.95
55 56 1.442017 GGCAATGTGGTTCGAACGC 60.442 57.895 21.34 16.87 0.00 4.84
56 57 1.792057 GCAATGTGGTTCGAACGCG 60.792 57.895 21.34 3.53 39.35 6.01
57 58 1.154488 CAATGTGGTTCGAACGCGG 60.154 57.895 21.34 7.48 38.28 6.46
58 59 2.322081 AATGTGGTTCGAACGCGGG 61.322 57.895 21.34 0.00 38.28 6.13
59 60 4.973055 TGTGGTTCGAACGCGGGG 62.973 66.667 21.34 0.00 38.28 5.73
60 61 4.974989 GTGGTTCGAACGCGGGGT 62.975 66.667 21.34 0.00 38.28 4.95
61 62 4.238654 TGGTTCGAACGCGGGGTT 62.239 61.111 21.34 10.44 42.96 4.11
72 73 4.524318 CGGGGTTCGGTCGATGGG 62.524 72.222 0.00 0.00 34.75 4.00
73 74 3.396570 GGGGTTCGGTCGATGGGT 61.397 66.667 0.00 0.00 0.00 4.51
74 75 2.125269 GGGTTCGGTCGATGGGTG 60.125 66.667 0.00 0.00 0.00 4.61
75 76 2.818274 GGTTCGGTCGATGGGTGC 60.818 66.667 0.00 0.00 0.00 5.01
76 77 3.186047 GTTCGGTCGATGGGTGCG 61.186 66.667 0.00 0.00 0.00 5.34
77 78 3.687102 TTCGGTCGATGGGTGCGT 61.687 61.111 0.00 0.00 0.00 5.24
78 79 3.925362 TTCGGTCGATGGGTGCGTG 62.925 63.158 0.00 0.00 0.00 5.34
79 80 4.429212 CGGTCGATGGGTGCGTGA 62.429 66.667 0.00 0.00 0.00 4.35
80 81 2.509336 GGTCGATGGGTGCGTGAG 60.509 66.667 0.00 0.00 0.00 3.51
81 82 2.509336 GTCGATGGGTGCGTGAGG 60.509 66.667 0.00 0.00 0.00 3.86
82 83 2.994995 TCGATGGGTGCGTGAGGT 60.995 61.111 0.00 0.00 0.00 3.85
83 84 2.047274 CGATGGGTGCGTGAGGTT 60.047 61.111 0.00 0.00 0.00 3.50
84 85 2.390599 CGATGGGTGCGTGAGGTTG 61.391 63.158 0.00 0.00 0.00 3.77
85 86 1.302511 GATGGGTGCGTGAGGTTGT 60.303 57.895 0.00 0.00 0.00 3.32
86 87 1.577328 GATGGGTGCGTGAGGTTGTG 61.577 60.000 0.00 0.00 0.00 3.33
87 88 3.660111 GGGTGCGTGAGGTTGTGC 61.660 66.667 0.00 0.00 0.00 4.57
88 89 4.012895 GGTGCGTGAGGTTGTGCG 62.013 66.667 0.00 0.00 0.00 5.34
89 90 4.012895 GTGCGTGAGGTTGTGCGG 62.013 66.667 0.00 0.00 0.00 5.69
93 94 2.904866 GTGAGGTTGTGCGGGCAA 60.905 61.111 0.00 0.00 0.00 4.52
94 95 2.904866 TGAGGTTGTGCGGGCAAC 60.905 61.111 9.27 9.27 45.68 4.17
95 96 4.025401 GAGGTTGTGCGGGCAACG 62.025 66.667 10.88 0.00 46.93 4.10
137 138 3.490759 GATCGCGCCACACACCAG 61.491 66.667 0.00 0.00 0.00 4.00
138 139 3.932580 GATCGCGCCACACACCAGA 62.933 63.158 0.00 0.00 0.00 3.86
139 140 4.961511 TCGCGCCACACACCAGAC 62.962 66.667 0.00 0.00 0.00 3.51
154 155 4.760047 GACGTGCGGGCTGTGGAT 62.760 66.667 0.00 0.00 0.00 3.41
159 160 4.864334 GCGGGCTGTGGATGGGAG 62.864 72.222 0.00 0.00 0.00 4.30
160 161 4.864334 CGGGCTGTGGATGGGAGC 62.864 72.222 0.00 0.00 0.00 4.70
161 162 4.864334 GGGCTGTGGATGGGAGCG 62.864 72.222 0.00 0.00 33.26 5.03
195 196 3.066190 CAGGCGGGTCCGTGTCTA 61.066 66.667 11.25 0.00 42.09 2.59
196 197 2.043248 AGGCGGGTCCGTGTCTAT 60.043 61.111 11.25 0.00 42.09 1.98
197 198 1.684734 AGGCGGGTCCGTGTCTATT 60.685 57.895 11.25 0.00 42.09 1.73
198 199 1.219935 GGCGGGTCCGTGTCTATTT 59.780 57.895 11.25 0.00 42.09 1.40
199 200 0.808847 GGCGGGTCCGTGTCTATTTC 60.809 60.000 11.25 0.00 42.09 2.17
200 201 0.108520 GCGGGTCCGTGTCTATTTCA 60.109 55.000 11.25 0.00 42.09 2.69
201 202 1.636988 CGGGTCCGTGTCTATTTCAC 58.363 55.000 0.55 0.00 34.35 3.18
202 203 1.067425 CGGGTCCGTGTCTATTTCACA 60.067 52.381 0.55 0.00 35.79 3.58
203 204 2.344025 GGGTCCGTGTCTATTTCACAC 58.656 52.381 0.00 0.00 40.75 3.82
208 209 1.084289 GTGTCTATTTCACACGGGGC 58.916 55.000 0.00 0.00 35.14 5.80
209 210 0.390603 TGTCTATTTCACACGGGGCG 60.391 55.000 0.00 0.00 0.00 6.13
210 211 0.390735 GTCTATTTCACACGGGGCGT 60.391 55.000 0.00 0.00 42.36 5.68
230 231 2.794103 TGCTGCACACATCCTAAATGT 58.206 42.857 0.00 0.00 0.00 2.71
231 232 2.749076 TGCTGCACACATCCTAAATGTC 59.251 45.455 0.00 0.00 0.00 3.06
232 233 2.749076 GCTGCACACATCCTAAATGTCA 59.251 45.455 0.00 0.00 0.00 3.58
233 234 3.426695 GCTGCACACATCCTAAATGTCAC 60.427 47.826 0.00 0.00 0.00 3.67
234 235 3.749226 TGCACACATCCTAAATGTCACA 58.251 40.909 0.00 0.00 0.00 3.58
235 236 3.501828 TGCACACATCCTAAATGTCACAC 59.498 43.478 0.00 0.00 0.00 3.82
236 237 3.424829 GCACACATCCTAAATGTCACACG 60.425 47.826 0.00 0.00 0.00 4.49
237 238 3.745975 CACACATCCTAAATGTCACACGT 59.254 43.478 0.00 0.00 0.00 4.49
238 239 3.745975 ACACATCCTAAATGTCACACGTG 59.254 43.478 15.48 15.48 0.00 4.49
239 240 3.745975 CACATCCTAAATGTCACACGTGT 59.254 43.478 17.22 17.22 0.00 4.49
240 241 3.745975 ACATCCTAAATGTCACACGTGTG 59.254 43.478 37.04 37.04 46.91 3.82
241 242 2.761559 TCCTAAATGTCACACGTGTGG 58.238 47.619 39.88 25.49 45.65 4.17
242 243 2.103432 TCCTAAATGTCACACGTGTGGT 59.897 45.455 39.88 26.38 45.65 4.16
251 252 2.971997 CACGTGTGGTGGATATCGG 58.028 57.895 7.58 0.00 43.16 4.18
252 253 1.143183 ACGTGTGGTGGATATCGGC 59.857 57.895 0.00 0.00 0.00 5.54
253 254 1.949133 CGTGTGGTGGATATCGGCG 60.949 63.158 0.00 0.00 0.00 6.46
254 255 1.143183 GTGTGGTGGATATCGGCGT 59.857 57.895 6.85 0.00 0.00 5.68
255 256 0.874607 GTGTGGTGGATATCGGCGTC 60.875 60.000 6.85 0.00 0.00 5.19
256 257 1.300697 GTGGTGGATATCGGCGTCC 60.301 63.158 6.85 7.52 35.02 4.79
257 258 1.456892 TGGTGGATATCGGCGTCCT 60.457 57.895 14.96 1.17 35.49 3.85
258 259 1.046472 TGGTGGATATCGGCGTCCTT 61.046 55.000 14.96 0.00 35.49 3.36
259 260 0.600255 GGTGGATATCGGCGTCCTTG 60.600 60.000 14.96 0.00 35.49 3.61
260 261 0.387929 GTGGATATCGGCGTCCTTGA 59.612 55.000 14.96 0.00 35.49 3.02
261 262 1.116308 TGGATATCGGCGTCCTTGAA 58.884 50.000 14.96 0.00 35.49 2.69
262 263 1.691976 TGGATATCGGCGTCCTTGAAT 59.308 47.619 14.96 0.00 35.49 2.57
263 264 2.894765 TGGATATCGGCGTCCTTGAATA 59.105 45.455 14.96 1.08 35.49 1.75
264 265 3.322541 TGGATATCGGCGTCCTTGAATAA 59.677 43.478 14.96 0.00 35.49 1.40
265 266 4.202274 TGGATATCGGCGTCCTTGAATAAA 60.202 41.667 14.96 0.00 35.49 1.40
266 267 4.935808 GGATATCGGCGTCCTTGAATAAAT 59.064 41.667 6.85 0.00 0.00 1.40
267 268 5.063564 GGATATCGGCGTCCTTGAATAAATC 59.936 44.000 6.85 0.00 0.00 2.17
268 269 3.536956 TCGGCGTCCTTGAATAAATCT 57.463 42.857 6.85 0.00 0.00 2.40
269 270 4.659111 TCGGCGTCCTTGAATAAATCTA 57.341 40.909 6.85 0.00 0.00 1.98
270 271 5.209818 TCGGCGTCCTTGAATAAATCTAT 57.790 39.130 6.85 0.00 0.00 1.98
271 272 6.335471 TCGGCGTCCTTGAATAAATCTATA 57.665 37.500 6.85 0.00 0.00 1.31
272 273 6.154445 TCGGCGTCCTTGAATAAATCTATAC 58.846 40.000 6.85 0.00 0.00 1.47
273 274 6.015688 TCGGCGTCCTTGAATAAATCTATACT 60.016 38.462 6.85 0.00 0.00 2.12
274 275 7.175467 TCGGCGTCCTTGAATAAATCTATACTA 59.825 37.037 6.85 0.00 0.00 1.82
275 276 7.272948 CGGCGTCCTTGAATAAATCTATACTAC 59.727 40.741 0.00 0.00 0.00 2.73
276 277 7.544915 GGCGTCCTTGAATAAATCTATACTACC 59.455 40.741 0.00 0.00 0.00 3.18
277 278 8.305317 GCGTCCTTGAATAAATCTATACTACCT 58.695 37.037 0.00 0.00 0.00 3.08
278 279 9.843334 CGTCCTTGAATAAATCTATACTACCTC 57.157 37.037 0.00 0.00 0.00 3.85
280 281 9.892444 TCCTTGAATAAATCTATACTACCTCCA 57.108 33.333 0.00 0.00 0.00 3.86
295 296 7.981102 ACTACCTCCATTTTAAAAGAGTGTC 57.019 36.000 6.79 0.00 0.00 3.67
296 297 6.940867 ACTACCTCCATTTTAAAAGAGTGTCC 59.059 38.462 6.79 0.00 0.00 4.02
297 298 5.953571 ACCTCCATTTTAAAAGAGTGTCCT 58.046 37.500 6.79 0.00 0.00 3.85
298 299 5.770162 ACCTCCATTTTAAAAGAGTGTCCTG 59.230 40.000 6.79 0.00 0.00 3.86
299 300 6.003950 CCTCCATTTTAAAAGAGTGTCCTGA 58.996 40.000 6.79 0.00 0.00 3.86
300 301 6.490040 CCTCCATTTTAAAAGAGTGTCCTGAA 59.510 38.462 6.79 0.00 0.00 3.02
301 302 7.014230 CCTCCATTTTAAAAGAGTGTCCTGAAA 59.986 37.037 6.79 0.00 0.00 2.69
302 303 8.299990 TCCATTTTAAAAGAGTGTCCTGAAAA 57.700 30.769 6.79 0.00 0.00 2.29
303 304 8.754080 TCCATTTTAAAAGAGTGTCCTGAAAAA 58.246 29.630 6.79 0.00 0.00 1.94
598 603 1.074623 CCTCTCTCCTCCCTGCCAT 60.075 63.158 0.00 0.00 0.00 4.40
650 655 0.955428 GCGAGCCACTGTTCCATTCA 60.955 55.000 0.00 0.00 0.00 2.57
772 784 2.270205 CACCGGCAGCCAATCTCT 59.730 61.111 13.30 0.00 0.00 3.10
971 987 4.787280 CGCCAGGAGAGGAGGGGT 62.787 72.222 0.00 0.00 0.00 4.95
973 989 3.086600 CCAGGAGAGGAGGGGTGC 61.087 72.222 0.00 0.00 0.00 5.01
1271 1290 0.236449 GGTACGCAACAAACCCTTCG 59.764 55.000 0.00 0.00 0.00 3.79
1433 1458 3.822735 ACCAACTGTACTGTAGAACGCTA 59.177 43.478 5.76 0.00 0.00 4.26
1472 1506 8.906636 TCACTCTCGTACTGTTTATATTTGTC 57.093 34.615 0.00 0.00 0.00 3.18
1742 1799 9.354673 AGACCAATAGACATAATGGGTTTTATG 57.645 33.333 3.33 3.33 42.63 1.90
2015 2072 5.183140 TGTGCTAACTCCTTTTGAAATAGCC 59.817 40.000 4.19 0.00 36.83 3.93
2143 2200 2.420547 GGATTCCTCAGCTGCACATGTA 60.421 50.000 9.47 0.00 0.00 2.29
2299 2362 5.537188 TCTATTGTGTTGTGGGCATTTTTC 58.463 37.500 0.00 0.00 0.00 2.29
2333 2396 4.151883 AGCCAAGAACCAAGCTATTTTGA 58.848 39.130 0.00 0.00 32.73 2.69
2564 2627 4.463879 CTCAGTGGCTGGCTCCCG 62.464 72.222 2.00 0.00 31.51 5.14
2647 2710 0.953727 TGATCCACTTTGTGCTGTGC 59.046 50.000 0.00 0.00 33.26 4.57
2811 2874 4.955811 AGCACCTTATCGGTAATGATGA 57.044 40.909 0.00 0.00 46.94 2.92
2822 2885 3.302675 CGGTAATGATGACATTCAGCACG 60.303 47.826 0.00 0.00 46.19 5.34
2848 2911 0.817013 TTCCCCAAGATGCGCATTTC 59.183 50.000 26.12 14.14 0.00 2.17
2939 3002 3.731089 TGGAACATTTAGAACGGTCGTT 58.269 40.909 8.56 8.56 41.54 3.85
3063 3250 7.545615 CCTTTTAACCTGGATTCAAACAATAGC 59.454 37.037 0.00 0.00 0.00 2.97
3196 3384 5.189659 AGGTTAGTTACGATGATCAGCTC 57.810 43.478 9.64 0.00 0.00 4.09
3277 3625 9.729281 AAATTGATTCATGCCTCAAGTTTTTAT 57.271 25.926 13.49 0.00 36.58 1.40
3278 3626 9.729281 AATTGATTCATGCCTCAAGTTTTTATT 57.271 25.926 13.08 2.00 35.04 1.40
3313 3661 3.990469 AGAACACGAGTTAGCAGAACATG 59.010 43.478 0.00 0.00 38.30 3.21
3342 3690 4.927267 TTGGACCAGGTGTCTTGATAAT 57.073 40.909 0.00 0.00 43.89 1.28
3660 4008 4.072189 TTCCAGAGGAGATGGACGAAGTT 61.072 47.826 0.00 0.00 46.46 2.66
3675 4023 2.869801 CGAAGTTGTCAAGTGGCTTACA 59.130 45.455 0.00 0.00 0.00 2.41
3713 4061 3.189287 GGCAGTTCATCGTCAACTTGATT 59.811 43.478 0.00 0.00 31.40 2.57
3804 4152 5.679638 GCCGAATTGAGTGATAAAATGGCTT 60.680 40.000 0.00 0.00 34.86 4.35
3894 4242 5.972935 TCGCTGAATCTTGGTACTATTGAA 58.027 37.500 0.00 0.00 0.00 2.69
3930 4288 4.764823 TGGTATGTGTTTCCATCCAAAGTC 59.235 41.667 0.00 0.00 0.00 3.01
3931 4289 4.764823 GGTATGTGTTTCCATCCAAAGTCA 59.235 41.667 0.00 0.00 0.00 3.41
3932 4290 5.106157 GGTATGTGTTTCCATCCAAAGTCAG 60.106 44.000 0.00 0.00 0.00 3.51
3933 4291 4.163441 TGTGTTTCCATCCAAAGTCAGA 57.837 40.909 0.00 0.00 0.00 3.27
3934 4292 4.136796 TGTGTTTCCATCCAAAGTCAGAG 58.863 43.478 0.00 0.00 0.00 3.35
3935 4293 4.141505 TGTGTTTCCATCCAAAGTCAGAGA 60.142 41.667 0.00 0.00 0.00 3.10
3936 4294 4.214332 GTGTTTCCATCCAAAGTCAGAGAC 59.786 45.833 0.00 0.00 0.00 3.36
3937 4295 4.141505 TGTTTCCATCCAAAGTCAGAGACA 60.142 41.667 0.00 0.00 34.60 3.41
3938 4296 4.916041 TTCCATCCAAAGTCAGAGACAT 57.084 40.909 0.00 0.00 34.60 3.06
3963 4321 4.973663 GTGATCAGTTTGGTTTTGGTTACG 59.026 41.667 0.00 0.00 0.00 3.18
3965 4323 5.357314 TGATCAGTTTGGTTTTGGTTACGAA 59.643 36.000 0.00 0.00 0.00 3.85
4032 4390 8.796475 ACTGAACTGATTATTTTACTTGTGCAT 58.204 29.630 0.00 0.00 0.00 3.96
4083 4441 9.929180 ACACGTGCTTAATGAGACATATATATT 57.071 29.630 17.22 0.00 0.00 1.28
4144 4550 8.796475 AGACAAGTTACATTGTTGATAGCAAAT 58.204 29.630 0.00 0.00 43.32 2.32
4149 4555 5.587388 ACATTGTTGATAGCAAATCCAGG 57.413 39.130 0.00 0.00 35.42 4.45
4150 4556 5.263599 ACATTGTTGATAGCAAATCCAGGA 58.736 37.500 0.00 0.00 35.42 3.86
4151 4557 5.895534 ACATTGTTGATAGCAAATCCAGGAT 59.104 36.000 0.00 0.00 35.42 3.24
4152 4558 5.840243 TTGTTGATAGCAAATCCAGGATG 57.160 39.130 1.44 0.00 35.42 3.51
4154 4560 4.210331 GTTGATAGCAAATCCAGGATGGT 58.790 43.478 1.44 0.88 46.76 3.55
4155 4561 4.646492 GTTGATAGCAAATCCAGGATGGTT 59.354 41.667 1.44 0.00 46.76 3.67
4156 4562 5.827797 GTTGATAGCAAATCCAGGATGGTTA 59.172 40.000 1.44 1.66 46.76 2.85
4157 4563 6.238759 GTTGATAGCAAATCCAGGATGGTTAC 60.239 42.308 1.44 0.00 46.76 2.50
4158 4564 8.549952 GTTGATAGCAAATCCAGGATGGTTACA 61.550 40.741 1.44 0.54 46.76 2.41
4167 4573 4.679373 CAGGATGGTTACATAGCAGAGT 57.321 45.455 0.00 0.00 37.47 3.24
4168 4574 4.626042 CAGGATGGTTACATAGCAGAGTC 58.374 47.826 0.00 0.00 37.47 3.36
4169 4575 4.100035 CAGGATGGTTACATAGCAGAGTCA 59.900 45.833 0.00 0.00 37.47 3.41
4170 4576 4.716784 AGGATGGTTACATAGCAGAGTCAA 59.283 41.667 0.00 0.00 37.47 3.18
4171 4577 5.189736 AGGATGGTTACATAGCAGAGTCAAA 59.810 40.000 0.00 0.00 37.47 2.69
4172 4578 5.525378 GGATGGTTACATAGCAGAGTCAAAG 59.475 44.000 0.00 0.00 37.47 2.77
4173 4579 5.483685 TGGTTACATAGCAGAGTCAAAGT 57.516 39.130 0.00 0.00 0.00 2.66
4174 4580 5.865085 TGGTTACATAGCAGAGTCAAAGTT 58.135 37.500 0.00 0.00 0.00 2.66
4175 4581 6.999950 TGGTTACATAGCAGAGTCAAAGTTA 58.000 36.000 0.00 0.00 0.00 2.24
4176 4582 6.872020 TGGTTACATAGCAGAGTCAAAGTTAC 59.128 38.462 0.00 0.00 0.00 2.50
4177 4583 6.872020 GGTTACATAGCAGAGTCAAAGTTACA 59.128 38.462 0.00 0.00 0.00 2.41
4178 4584 7.063544 GGTTACATAGCAGAGTCAAAGTTACAG 59.936 40.741 0.00 0.00 0.00 2.74
4179 4585 6.102897 ACATAGCAGAGTCAAAGTTACAGT 57.897 37.500 0.00 0.00 0.00 3.55
4180 4586 5.928839 ACATAGCAGAGTCAAAGTTACAGTG 59.071 40.000 0.00 0.00 0.00 3.66
4181 4587 3.134458 AGCAGAGTCAAAGTTACAGTGC 58.866 45.455 0.00 0.00 0.00 4.40
4182 4588 2.872245 GCAGAGTCAAAGTTACAGTGCA 59.128 45.455 0.00 0.00 31.58 4.57
4183 4589 3.312421 GCAGAGTCAAAGTTACAGTGCAA 59.688 43.478 0.00 0.00 31.58 4.08
4184 4590 4.786609 GCAGAGTCAAAGTTACAGTGCAAC 60.787 45.833 0.00 0.00 31.58 4.17
4185 4591 4.332543 CAGAGTCAAAGTTACAGTGCAACA 59.667 41.667 8.90 0.00 41.43 3.33
4186 4592 4.941263 AGAGTCAAAGTTACAGTGCAACAA 59.059 37.500 8.90 0.00 41.43 2.83
4187 4593 5.065218 AGAGTCAAAGTTACAGTGCAACAAG 59.935 40.000 8.90 0.00 41.43 3.16
4188 4594 4.941263 AGTCAAAGTTACAGTGCAACAAGA 59.059 37.500 8.90 0.94 41.43 3.02
4189 4595 5.414454 AGTCAAAGTTACAGTGCAACAAGAA 59.586 36.000 8.90 0.00 41.43 2.52
4190 4596 6.072175 AGTCAAAGTTACAGTGCAACAAGAAA 60.072 34.615 8.90 0.00 41.43 2.52
4191 4597 6.033513 GTCAAAGTTACAGTGCAACAAGAAAC 59.966 38.462 8.90 0.00 41.43 2.78
4192 4598 5.637006 AAGTTACAGTGCAACAAGAAACA 57.363 34.783 8.90 0.00 41.43 2.83
4193 4599 4.981794 AGTTACAGTGCAACAAGAAACAC 58.018 39.130 8.90 0.00 41.43 3.32
4194 4600 4.700213 AGTTACAGTGCAACAAGAAACACT 59.300 37.500 8.90 0.00 43.92 3.55
4195 4601 5.878116 AGTTACAGTGCAACAAGAAACACTA 59.122 36.000 8.90 0.00 41.28 2.74
4196 4602 4.616181 ACAGTGCAACAAGAAACACTAC 57.384 40.909 0.00 0.00 41.28 2.73
4197 4603 4.261801 ACAGTGCAACAAGAAACACTACT 58.738 39.130 0.00 0.00 41.28 2.57
4198 4604 5.424757 ACAGTGCAACAAGAAACACTACTA 58.575 37.500 0.00 0.00 41.28 1.82
4199 4605 6.055588 ACAGTGCAACAAGAAACACTACTAT 58.944 36.000 0.00 0.00 41.28 2.12
4200 4606 6.542370 ACAGTGCAACAAGAAACACTACTATT 59.458 34.615 0.00 0.00 41.28 1.73
4201 4607 7.713507 ACAGTGCAACAAGAAACACTACTATTA 59.286 33.333 0.00 0.00 41.28 0.98
4202 4608 8.009974 CAGTGCAACAAGAAACACTACTATTAC 58.990 37.037 0.00 0.00 41.28 1.89
4203 4609 7.713507 AGTGCAACAAGAAACACTACTATTACA 59.286 33.333 0.00 0.00 41.41 2.41
4204 4610 8.504005 GTGCAACAAGAAACACTACTATTACAT 58.496 33.333 0.00 0.00 36.32 2.29
4205 4611 9.062524 TGCAACAAGAAACACTACTATTACATT 57.937 29.630 0.00 0.00 0.00 2.71
4206 4612 9.329913 GCAACAAGAAACACTACTATTACATTG 57.670 33.333 0.00 0.00 0.00 2.82
4215 4621 8.575565 ACACTACTATTACATTGTTGATAGCG 57.424 34.615 14.76 10.85 0.00 4.26
4216 4622 8.410912 ACACTACTATTACATTGTTGATAGCGA 58.589 33.333 14.76 7.05 0.00 4.93
4217 4623 9.244799 CACTACTATTACATTGTTGATAGCGAA 57.755 33.333 14.76 5.60 0.00 4.70
4218 4624 9.982651 ACTACTATTACATTGTTGATAGCGAAT 57.017 29.630 14.76 2.62 0.00 3.34
4220 4626 8.311650 ACTATTACATTGTTGATAGCGAATCC 57.688 34.615 14.76 0.00 33.22 3.01
4243 4651 3.031736 GGAGGGTTACATAGCAGAGTCA 58.968 50.000 0.00 0.00 0.00 3.41
4300 4711 0.675837 GAGCTTCAGCATCAGCCACA 60.676 55.000 0.75 0.00 45.16 4.17
4346 4757 5.127845 TGTGTTTGTGCCATAGAAAAAGGAA 59.872 36.000 0.00 0.00 0.00 3.36
4414 4828 8.851541 AAATATTTTTGTGGATGACATTTGCT 57.148 26.923 0.00 0.00 33.40 3.91
4453 6229 6.876257 ACATTTACAAGCTGTTTTGGTTTTGA 59.124 30.769 0.00 0.00 32.32 2.69
4457 6233 5.304778 ACAAGCTGTTTTGGTTTTGAAAGT 58.695 33.333 0.00 0.00 32.32 2.66
4468 6244 4.081917 TGGTTTTGAAAGTTGAGGGTTGTC 60.082 41.667 0.00 0.00 0.00 3.18
4477 6253 5.678955 AGTTGAGGGTTGTCTATTAGACC 57.321 43.478 18.81 6.47 44.44 3.85
4481 6257 4.081862 TGAGGGTTGTCTATTAGACCGTTG 60.082 45.833 18.81 0.00 44.44 4.10
4483 6259 2.601763 GGTTGTCTATTAGACCGTTGCG 59.398 50.000 18.81 0.00 44.44 4.85
4491 6267 2.336554 TAGACCGTTGCGTAGTTCAC 57.663 50.000 0.00 0.00 0.00 3.18
4492 6268 0.386476 AGACCGTTGCGTAGTTCACA 59.614 50.000 0.00 0.00 0.00 3.58
4493 6269 0.782384 GACCGTTGCGTAGTTCACAG 59.218 55.000 0.00 0.00 0.00 3.66
4498 6281 2.029970 CGTTGCGTAGTTCACAGTTGTT 59.970 45.455 0.00 0.00 0.00 2.83
4527 6310 4.810790 ACTTCAGTGATAGTTCGAGGTTG 58.189 43.478 0.00 0.00 0.00 3.77
4535 6318 7.382488 CAGTGATAGTTCGAGGTTGTAATATGG 59.618 40.741 0.00 0.00 0.00 2.74
4536 6319 7.287005 AGTGATAGTTCGAGGTTGTAATATGGA 59.713 37.037 0.00 0.00 0.00 3.41
4578 6361 7.200434 TGATCCTTTATAATAGATCTGGGGC 57.800 40.000 18.73 0.00 36.82 5.80
4579 6362 6.735229 TGATCCTTTATAATAGATCTGGGGCA 59.265 38.462 18.73 0.00 36.82 5.36
4580 6363 7.407033 TGATCCTTTATAATAGATCTGGGGCAT 59.593 37.037 18.73 0.00 36.82 4.40
4584 6367 8.743714 CCTTTATAATAGATCTGGGGCATTTTC 58.256 37.037 5.18 0.00 0.00 2.29
4585 6368 9.300681 CTTTATAATAGATCTGGGGCATTTTCA 57.699 33.333 5.18 0.00 0.00 2.69
4586 6369 8.635765 TTATAATAGATCTGGGGCATTTTCAC 57.364 34.615 5.18 0.00 0.00 3.18
4591 6376 4.347583 AGATCTGGGGCATTTTCACAAAAA 59.652 37.500 0.00 0.00 38.66 1.94
4596 6381 7.056635 TCTGGGGCATTTTCACAAAAATAAAA 58.943 30.769 0.00 0.00 41.96 1.52
4627 6412 9.862149 TTTCAGAATTTTTAGAAGTTACTCCCT 57.138 29.630 0.00 0.00 0.00 4.20
4628 6413 9.503399 TTCAGAATTTTTAGAAGTTACTCCCTC 57.497 33.333 0.00 0.00 0.00 4.30
4629 6414 8.881262 TCAGAATTTTTAGAAGTTACTCCCTCT 58.119 33.333 0.00 0.00 0.00 3.69
4630 6415 8.940952 CAGAATTTTTAGAAGTTACTCCCTCTG 58.059 37.037 0.00 0.00 0.00 3.35
4631 6416 8.661345 AGAATTTTTAGAAGTTACTCCCTCTGT 58.339 33.333 0.00 0.00 0.00 3.41
4632 6417 8.850007 AATTTTTAGAAGTTACTCCCTCTGTC 57.150 34.615 0.00 0.00 0.00 3.51
4633 6418 5.997384 TTTAGAAGTTACTCCCTCTGTCC 57.003 43.478 0.00 0.00 0.00 4.02
4634 6419 2.822697 AGAAGTTACTCCCTCTGTCCC 58.177 52.381 0.00 0.00 0.00 4.46
4635 6420 2.111972 AGAAGTTACTCCCTCTGTCCCA 59.888 50.000 0.00 0.00 0.00 4.37
4636 6421 2.950990 AGTTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
4637 6422 4.016479 AGAAGTTACTCCCTCTGTCCCATA 60.016 45.833 0.00 0.00 0.00 2.74
4638 6423 4.348020 AGTTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
4639 6424 4.897051 AGTTACTCCCTCTGTCCCATAAT 58.103 43.478 0.00 0.00 0.00 1.28
4640 6425 4.656112 AGTTACTCCCTCTGTCCCATAATG 59.344 45.833 0.00 0.00 0.00 1.90
4641 6426 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
4642 6427 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
4643 6428 4.832492 ACTCCCTCTGTCCCATAATGTAT 58.168 43.478 0.00 0.00 0.00 2.29
4644 6429 4.594920 ACTCCCTCTGTCCCATAATGTATG 59.405 45.833 0.00 0.00 35.94 2.39
4645 6430 4.826616 TCCCTCTGTCCCATAATGTATGA 58.173 43.478 0.00 0.00 38.45 2.15
4646 6431 4.593206 TCCCTCTGTCCCATAATGTATGAC 59.407 45.833 0.00 0.00 38.45 3.06
4647 6432 4.347876 CCCTCTGTCCCATAATGTATGACA 59.652 45.833 0.00 0.00 38.45 3.58
4648 6433 5.013495 CCCTCTGTCCCATAATGTATGACAT 59.987 44.000 0.00 0.00 41.31 3.06
4650 6435 7.000472 CCTCTGTCCCATAATGTATGACATTT 59.000 38.462 9.92 0.00 45.80 2.32
4651 6436 7.503566 CCTCTGTCCCATAATGTATGACATTTT 59.496 37.037 9.92 0.33 45.80 1.82
4652 6437 8.821686 TCTGTCCCATAATGTATGACATTTTT 57.178 30.769 9.92 0.00 45.80 1.94
4677 6462 7.496704 TGATACTACGCTAGTGTTAAAAACG 57.503 36.000 15.28 0.00 39.81 3.60
4678 6463 7.083858 TGATACTACGCTAGTGTTAAAAACGT 58.916 34.615 15.28 2.86 39.81 3.99
4679 6464 5.812665 ACTACGCTAGTGTTAAAAACGTC 57.187 39.130 15.28 0.00 37.69 4.34
4680 6465 5.523369 ACTACGCTAGTGTTAAAAACGTCT 58.477 37.500 15.28 0.00 37.69 4.18
4681 6466 5.979517 ACTACGCTAGTGTTAAAAACGTCTT 59.020 36.000 15.28 0.00 37.69 3.01
4682 6467 7.138736 ACTACGCTAGTGTTAAAAACGTCTTA 58.861 34.615 15.28 0.00 37.69 2.10
4683 6468 6.202815 ACGCTAGTGTTAAAAACGTCTTAC 57.797 37.500 2.24 0.00 0.00 2.34
4684 6469 5.748152 ACGCTAGTGTTAAAAACGTCTTACA 59.252 36.000 2.24 0.00 0.00 2.41
4685 6470 6.421801 ACGCTAGTGTTAAAAACGTCTTACAT 59.578 34.615 2.24 0.00 0.00 2.29
4686 6471 7.042523 ACGCTAGTGTTAAAAACGTCTTACATT 60.043 33.333 2.24 0.00 0.00 2.71
4687 6472 8.427012 CGCTAGTGTTAAAAACGTCTTACATTA 58.573 33.333 0.00 0.00 0.00 1.90
4694 6479 9.750882 GTTAAAAACGTCTTACATTATGAGACC 57.249 33.333 0.00 0.00 40.13 3.85
4695 6480 6.642683 AAAACGTCTTACATTATGAGACCG 57.357 37.500 0.00 2.59 40.13 4.79
4696 6481 4.303086 ACGTCTTACATTATGAGACCGG 57.697 45.455 0.00 0.00 40.13 5.28
4697 6482 3.067742 ACGTCTTACATTATGAGACCGGG 59.932 47.826 6.32 0.00 40.13 5.73
4698 6483 3.552273 CGTCTTACATTATGAGACCGGGG 60.552 52.174 6.32 0.00 40.13 5.73
4699 6484 2.969950 TCTTACATTATGAGACCGGGGG 59.030 50.000 6.32 0.00 0.00 5.40
4700 6485 2.779429 TACATTATGAGACCGGGGGA 57.221 50.000 6.32 0.00 0.00 4.81
4701 6486 1.424638 ACATTATGAGACCGGGGGAG 58.575 55.000 6.32 0.00 0.00 4.30
4702 6487 1.344087 ACATTATGAGACCGGGGGAGT 60.344 52.381 6.32 0.00 0.00 3.85
4703 6488 2.090943 ACATTATGAGACCGGGGGAGTA 60.091 50.000 6.32 0.00 0.00 2.59
4704 6489 3.173965 CATTATGAGACCGGGGGAGTAT 58.826 50.000 6.32 0.00 0.00 2.12
4705 6490 3.339713 TTATGAGACCGGGGGAGTATT 57.660 47.619 6.32 0.00 0.00 1.89
4706 6491 4.474303 TTATGAGACCGGGGGAGTATTA 57.526 45.455 6.32 0.00 0.00 0.98
4707 6492 2.077687 TGAGACCGGGGGAGTATTAC 57.922 55.000 6.32 0.00 0.00 1.89
4708 6493 1.572415 TGAGACCGGGGGAGTATTACT 59.428 52.381 6.32 0.00 0.00 2.24
4709 6494 2.237643 GAGACCGGGGGAGTATTACTC 58.762 57.143 14.34 14.34 44.32 2.59
4710 6495 1.572415 AGACCGGGGGAGTATTACTCA 59.428 52.381 22.10 0.00 46.79 3.41
4711 6496 2.179424 AGACCGGGGGAGTATTACTCAT 59.821 50.000 22.10 3.69 46.79 2.90
4712 6497 2.561858 GACCGGGGGAGTATTACTCATC 59.438 54.545 22.10 14.31 46.79 2.92
4713 6498 2.179424 ACCGGGGGAGTATTACTCATCT 59.821 50.000 22.10 0.00 46.79 2.90
4714 6499 2.563179 CCGGGGGAGTATTACTCATCTG 59.437 54.545 22.10 17.14 46.79 2.90
4715 6500 3.231818 CGGGGGAGTATTACTCATCTGT 58.768 50.000 22.10 0.00 46.79 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.817099 CTCCAACCTCTGCATCGGC 60.817 63.158 1.57 0.00 41.68 5.54
4 5 0.460987 GTCTCCAACCTCTGCATCGG 60.461 60.000 0.00 0.00 0.00 4.18
5 6 0.803768 CGTCTCCAACCTCTGCATCG 60.804 60.000 0.00 0.00 0.00 3.84
6 7 0.532573 TCGTCTCCAACCTCTGCATC 59.467 55.000 0.00 0.00 0.00 3.91
7 8 0.247736 GTCGTCTCCAACCTCTGCAT 59.752 55.000 0.00 0.00 0.00 3.96
8 9 1.666011 GTCGTCTCCAACCTCTGCA 59.334 57.895 0.00 0.00 0.00 4.41
9 10 1.444553 CGTCGTCTCCAACCTCTGC 60.445 63.158 0.00 0.00 0.00 4.26
10 11 0.169230 CTCGTCGTCTCCAACCTCTG 59.831 60.000 0.00 0.00 0.00 3.35
11 12 0.961358 CCTCGTCGTCTCCAACCTCT 60.961 60.000 0.00 0.00 0.00 3.69
12 13 1.507174 CCTCGTCGTCTCCAACCTC 59.493 63.158 0.00 0.00 0.00 3.85
13 14 1.977544 CCCTCGTCGTCTCCAACCT 60.978 63.158 0.00 0.00 0.00 3.50
14 15 1.935327 CTCCCTCGTCGTCTCCAACC 61.935 65.000 0.00 0.00 0.00 3.77
15 16 1.507174 CTCCCTCGTCGTCTCCAAC 59.493 63.158 0.00 0.00 0.00 3.77
16 17 1.677966 CCTCCCTCGTCGTCTCCAA 60.678 63.158 0.00 0.00 0.00 3.53
17 18 2.045242 CCTCCCTCGTCGTCTCCA 60.045 66.667 0.00 0.00 0.00 3.86
18 19 2.829458 CCCTCCCTCGTCGTCTCC 60.829 72.222 0.00 0.00 0.00 3.71
19 20 2.045143 ACCCTCCCTCGTCGTCTC 60.045 66.667 0.00 0.00 0.00 3.36
20 21 2.361357 CACCCTCCCTCGTCGTCT 60.361 66.667 0.00 0.00 0.00 4.18
21 22 3.450115 CCACCCTCCCTCGTCGTC 61.450 72.222 0.00 0.00 0.00 4.20
24 25 2.670148 ATTGCCACCCTCCCTCGTC 61.670 63.158 0.00 0.00 0.00 4.20
25 26 2.610859 ATTGCCACCCTCCCTCGT 60.611 61.111 0.00 0.00 0.00 4.18
26 27 2.124570 CATTGCCACCCTCCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
27 28 1.379044 CACATTGCCACCCTCCCTC 60.379 63.158 0.00 0.00 0.00 4.30
28 29 2.765969 CACATTGCCACCCTCCCT 59.234 61.111 0.00 0.00 0.00 4.20
29 30 2.362889 CCACATTGCCACCCTCCC 60.363 66.667 0.00 0.00 0.00 4.30
30 31 1.228862 AACCACATTGCCACCCTCC 60.229 57.895 0.00 0.00 0.00 4.30
31 32 1.586154 CGAACCACATTGCCACCCTC 61.586 60.000 0.00 0.00 0.00 4.30
32 33 1.603455 CGAACCACATTGCCACCCT 60.603 57.895 0.00 0.00 0.00 4.34
33 34 1.175983 TTCGAACCACATTGCCACCC 61.176 55.000 0.00 0.00 0.00 4.61
34 35 0.039527 GTTCGAACCACATTGCCACC 60.040 55.000 17.68 0.00 0.00 4.61
35 36 0.385473 CGTTCGAACCACATTGCCAC 60.385 55.000 22.07 0.00 0.00 5.01
36 37 1.945522 CGTTCGAACCACATTGCCA 59.054 52.632 22.07 0.00 0.00 4.92
37 38 1.442017 GCGTTCGAACCACATTGCC 60.442 57.895 22.07 0.97 0.00 4.52
38 39 1.792057 CGCGTTCGAACCACATTGC 60.792 57.895 22.07 16.47 38.10 3.56
39 40 1.154488 CCGCGTTCGAACCACATTG 60.154 57.895 22.07 8.36 38.10 2.82
40 41 2.322081 CCCGCGTTCGAACCACATT 61.322 57.895 22.07 0.00 38.10 2.71
41 42 2.740826 CCCGCGTTCGAACCACAT 60.741 61.111 22.07 0.00 38.10 3.21
42 43 4.973055 CCCCGCGTTCGAACCACA 62.973 66.667 22.07 0.00 38.10 4.17
43 44 4.974989 ACCCCGCGTTCGAACCAC 62.975 66.667 22.07 13.53 38.10 4.16
44 45 4.238654 AACCCCGCGTTCGAACCA 62.239 61.111 22.07 0.00 38.10 3.67
45 46 3.417224 GAACCCCGCGTTCGAACC 61.417 66.667 22.07 13.64 41.51 3.62
55 56 4.524318 CCCATCGACCGAACCCCG 62.524 72.222 0.00 0.00 38.18 5.73
56 57 3.396570 ACCCATCGACCGAACCCC 61.397 66.667 0.00 0.00 0.00 4.95
57 58 2.125269 CACCCATCGACCGAACCC 60.125 66.667 0.00 0.00 0.00 4.11
58 59 2.818274 GCACCCATCGACCGAACC 60.818 66.667 0.00 0.00 0.00 3.62
59 60 3.186047 CGCACCCATCGACCGAAC 61.186 66.667 0.00 0.00 0.00 3.95
60 61 3.687102 ACGCACCCATCGACCGAA 61.687 61.111 0.00 0.00 0.00 4.30
61 62 4.429212 CACGCACCCATCGACCGA 62.429 66.667 0.00 0.00 0.00 4.69
62 63 4.429212 TCACGCACCCATCGACCG 62.429 66.667 0.00 0.00 0.00 4.79
63 64 2.509336 CTCACGCACCCATCGACC 60.509 66.667 0.00 0.00 0.00 4.79
64 65 2.509336 CCTCACGCACCCATCGAC 60.509 66.667 0.00 0.00 0.00 4.20
65 66 2.579657 AACCTCACGCACCCATCGA 61.580 57.895 0.00 0.00 0.00 3.59
66 67 2.047274 AACCTCACGCACCCATCG 60.047 61.111 0.00 0.00 0.00 3.84
67 68 1.302511 ACAACCTCACGCACCCATC 60.303 57.895 0.00 0.00 0.00 3.51
68 69 1.600636 CACAACCTCACGCACCCAT 60.601 57.895 0.00 0.00 0.00 4.00
69 70 2.203139 CACAACCTCACGCACCCA 60.203 61.111 0.00 0.00 0.00 4.51
70 71 3.660111 GCACAACCTCACGCACCC 61.660 66.667 0.00 0.00 0.00 4.61
71 72 4.012895 CGCACAACCTCACGCACC 62.013 66.667 0.00 0.00 0.00 5.01
72 73 4.012895 CCGCACAACCTCACGCAC 62.013 66.667 0.00 0.00 0.00 5.34
76 77 2.904866 TTGCCCGCACAACCTCAC 60.905 61.111 0.00 0.00 0.00 3.51
77 78 2.904866 GTTGCCCGCACAACCTCA 60.905 61.111 7.36 0.00 43.34 3.86
78 79 4.025401 CGTTGCCCGCACAACCTC 62.025 66.667 11.68 0.00 45.75 3.85
120 121 3.490759 CTGGTGTGTGGCGCGATC 61.491 66.667 12.10 0.51 0.00 3.69
121 122 4.002506 TCTGGTGTGTGGCGCGAT 62.003 61.111 12.10 0.00 0.00 4.58
122 123 4.961511 GTCTGGTGTGTGGCGCGA 62.962 66.667 12.10 0.00 0.00 5.87
125 126 3.337889 CACGTCTGGTGTGTGGCG 61.338 66.667 0.00 0.00 41.89 5.69
137 138 4.760047 ATCCACAGCCCGCACGTC 62.760 66.667 0.00 0.00 0.00 4.34
142 143 4.864334 CTCCCATCCACAGCCCGC 62.864 72.222 0.00 0.00 0.00 6.13
143 144 4.864334 GCTCCCATCCACAGCCCG 62.864 72.222 0.00 0.00 0.00 6.13
144 145 4.864334 CGCTCCCATCCACAGCCC 62.864 72.222 0.00 0.00 0.00 5.19
178 179 1.956629 AATAGACACGGACCCGCCTG 61.957 60.000 8.55 2.99 44.19 4.85
179 180 1.262640 AAATAGACACGGACCCGCCT 61.263 55.000 8.55 6.16 44.19 5.52
180 181 0.808847 GAAATAGACACGGACCCGCC 60.809 60.000 8.55 0.00 44.19 6.13
181 182 0.108520 TGAAATAGACACGGACCCGC 60.109 55.000 8.55 0.00 44.19 6.13
182 183 1.067425 TGTGAAATAGACACGGACCCG 60.067 52.381 6.94 6.94 46.03 5.28
183 184 2.344025 GTGTGAAATAGACACGGACCC 58.656 52.381 0.00 0.00 40.61 4.46
189 190 1.084289 GCCCCGTGTGAAATAGACAC 58.916 55.000 0.00 0.00 40.34 3.67
190 191 0.390603 CGCCCCGTGTGAAATAGACA 60.391 55.000 0.00 0.00 0.00 3.41
191 192 0.390735 ACGCCCCGTGTGAAATAGAC 60.391 55.000 0.00 0.00 39.18 2.59
192 193 1.976898 ACGCCCCGTGTGAAATAGA 59.023 52.632 0.00 0.00 39.18 1.98
193 194 4.609995 ACGCCCCGTGTGAAATAG 57.390 55.556 0.00 0.00 39.18 1.73
210 211 2.749076 GACATTTAGGATGTGTGCAGCA 59.251 45.455 0.00 0.00 31.62 4.41
211 212 2.749076 TGACATTTAGGATGTGTGCAGC 59.251 45.455 0.00 0.00 31.52 5.25
212 213 3.752747 TGTGACATTTAGGATGTGTGCAG 59.247 43.478 0.00 0.00 31.52 4.41
213 214 3.501828 GTGTGACATTTAGGATGTGTGCA 59.498 43.478 0.00 0.00 31.52 4.57
214 215 3.424829 CGTGTGACATTTAGGATGTGTGC 60.425 47.826 0.00 0.00 31.52 4.57
215 216 3.745975 ACGTGTGACATTTAGGATGTGTG 59.254 43.478 0.00 0.00 31.52 3.82
216 217 3.745975 CACGTGTGACATTTAGGATGTGT 59.254 43.478 7.58 0.00 31.52 3.72
217 218 3.745975 ACACGTGTGACATTTAGGATGTG 59.254 43.478 22.71 0.00 31.52 3.21
218 219 4.002906 ACACGTGTGACATTTAGGATGT 57.997 40.909 22.71 0.00 34.52 3.06
231 232 1.277326 CGATATCCACCACACGTGTG 58.723 55.000 36.13 36.13 45.23 3.82
232 233 0.174845 CCGATATCCACCACACGTGT 59.825 55.000 17.22 17.22 41.26 4.49
233 234 1.151777 GCCGATATCCACCACACGTG 61.152 60.000 15.48 15.48 42.62 4.49
234 235 1.143183 GCCGATATCCACCACACGT 59.857 57.895 0.00 0.00 0.00 4.49
235 236 1.949133 CGCCGATATCCACCACACG 60.949 63.158 0.00 0.00 0.00 4.49
236 237 0.874607 GACGCCGATATCCACCACAC 60.875 60.000 0.00 0.00 0.00 3.82
237 238 1.440060 GACGCCGATATCCACCACA 59.560 57.895 0.00 0.00 0.00 4.17
238 239 1.300697 GGACGCCGATATCCACCAC 60.301 63.158 0.00 0.00 34.87 4.16
239 240 1.046472 AAGGACGCCGATATCCACCA 61.046 55.000 0.00 0.00 37.47 4.17
240 241 0.600255 CAAGGACGCCGATATCCACC 60.600 60.000 0.00 0.00 37.47 4.61
241 242 0.387929 TCAAGGACGCCGATATCCAC 59.612 55.000 0.00 0.00 37.47 4.02
242 243 1.116308 TTCAAGGACGCCGATATCCA 58.884 50.000 0.00 0.00 37.47 3.41
243 244 2.457366 ATTCAAGGACGCCGATATCC 57.543 50.000 0.00 0.00 34.98 2.59
244 245 5.869888 AGATTTATTCAAGGACGCCGATATC 59.130 40.000 0.00 0.00 0.00 1.63
245 246 5.794894 AGATTTATTCAAGGACGCCGATAT 58.205 37.500 0.00 0.00 0.00 1.63
246 247 5.209818 AGATTTATTCAAGGACGCCGATA 57.790 39.130 0.00 0.00 0.00 2.92
247 248 4.073293 AGATTTATTCAAGGACGCCGAT 57.927 40.909 0.00 0.00 0.00 4.18
248 249 3.536956 AGATTTATTCAAGGACGCCGA 57.463 42.857 0.00 0.00 0.00 5.54
249 250 6.157211 AGTATAGATTTATTCAAGGACGCCG 58.843 40.000 0.00 0.00 0.00 6.46
250 251 7.544915 GGTAGTATAGATTTATTCAAGGACGCC 59.455 40.741 0.00 0.00 0.00 5.68
251 252 8.305317 AGGTAGTATAGATTTATTCAAGGACGC 58.695 37.037 0.00 0.00 0.00 5.19
252 253 9.843334 GAGGTAGTATAGATTTATTCAAGGACG 57.157 37.037 0.00 0.00 0.00 4.79
254 255 9.892444 TGGAGGTAGTATAGATTTATTCAAGGA 57.108 33.333 0.00 0.00 0.00 3.36
269 270 9.668497 GACACTCTTTTAAAATGGAGGTAGTAT 57.332 33.333 17.00 0.00 0.00 2.12
270 271 8.098912 GGACACTCTTTTAAAATGGAGGTAGTA 58.901 37.037 17.00 0.00 0.00 1.82
271 272 6.940867 GGACACTCTTTTAAAATGGAGGTAGT 59.059 38.462 17.00 13.11 0.00 2.73
272 273 7.119846 CAGGACACTCTTTTAAAATGGAGGTAG 59.880 40.741 17.00 10.97 0.00 3.18
273 274 6.940298 CAGGACACTCTTTTAAAATGGAGGTA 59.060 38.462 17.00 0.00 0.00 3.08
274 275 5.770162 CAGGACACTCTTTTAAAATGGAGGT 59.230 40.000 17.00 12.88 0.00 3.85
275 276 6.003950 TCAGGACACTCTTTTAAAATGGAGG 58.996 40.000 17.00 10.72 0.00 4.30
276 277 7.510549 TTCAGGACACTCTTTTAAAATGGAG 57.489 36.000 13.07 13.07 0.00 3.86
277 278 7.889873 TTTCAGGACACTCTTTTAAAATGGA 57.110 32.000 0.09 0.00 0.00 3.41
278 279 8.940768 TTTTTCAGGACACTCTTTTAAAATGG 57.059 30.769 0.09 0.41 0.00 3.16
300 301 5.461032 TTCCCGTGAATTGCATAGTTTTT 57.539 34.783 0.00 0.00 0.00 1.94
301 302 5.461032 TTTCCCGTGAATTGCATAGTTTT 57.539 34.783 0.00 0.00 0.00 2.43
302 303 5.461032 TTTTCCCGTGAATTGCATAGTTT 57.539 34.783 0.00 0.00 0.00 2.66
303 304 4.082245 CCTTTTCCCGTGAATTGCATAGTT 60.082 41.667 0.00 0.00 0.00 2.24
304 305 3.443681 CCTTTTCCCGTGAATTGCATAGT 59.556 43.478 0.00 0.00 0.00 2.12
305 306 3.443681 ACCTTTTCCCGTGAATTGCATAG 59.556 43.478 0.00 0.00 0.00 2.23
306 307 3.192422 CACCTTTTCCCGTGAATTGCATA 59.808 43.478 0.00 0.00 31.36 3.14
307 308 2.029110 CACCTTTTCCCGTGAATTGCAT 60.029 45.455 0.00 0.00 31.36 3.96
308 309 1.339610 CACCTTTTCCCGTGAATTGCA 59.660 47.619 0.00 0.00 31.36 4.08
309 310 1.339929 ACACCTTTTCCCGTGAATTGC 59.660 47.619 0.00 0.00 34.05 3.56
310 311 2.360801 ACACACCTTTTCCCGTGAATTG 59.639 45.455 0.00 0.00 34.05 2.32
311 312 2.621526 GACACACCTTTTCCCGTGAATT 59.378 45.455 0.00 0.00 34.05 2.17
312 313 2.227194 GACACACCTTTTCCCGTGAAT 58.773 47.619 0.00 0.00 34.05 2.57
313 314 1.670791 GACACACCTTTTCCCGTGAA 58.329 50.000 0.00 0.00 34.05 3.18
314 315 0.531090 CGACACACCTTTTCCCGTGA 60.531 55.000 0.00 0.00 34.05 4.35
315 316 0.531090 TCGACACACCTTTTCCCGTG 60.531 55.000 0.00 0.00 36.04 4.94
316 317 0.249741 CTCGACACACCTTTTCCCGT 60.250 55.000 0.00 0.00 0.00 5.28
317 318 0.032952 TCTCGACACACCTTTTCCCG 59.967 55.000 0.00 0.00 0.00 5.14
318 319 1.202604 TGTCTCGACACACCTTTTCCC 60.203 52.381 0.00 0.00 36.21 3.97
319 320 2.234300 TGTCTCGACACACCTTTTCC 57.766 50.000 0.00 0.00 36.21 3.13
523 528 2.233654 CGCGATTCGGAAGAGCTGG 61.234 63.158 0.00 1.49 43.69 4.85
619 624 2.496817 GCTCGCTACAGGACCTGG 59.503 66.667 25.34 9.79 35.51 4.45
659 664 4.371417 ATGGGTGTGGCAGGCAGG 62.371 66.667 0.00 0.00 0.00 4.85
660 665 2.753043 GATGGGTGTGGCAGGCAG 60.753 66.667 0.00 0.00 0.00 4.85
695 700 2.281761 CTCCACCACCACCACTGC 60.282 66.667 0.00 0.00 0.00 4.40
772 784 0.399519 GGGGGAAGGAATCTACGGGA 60.400 60.000 0.00 0.00 0.00 5.14
1026 1045 0.318869 CATAATACGTACCGGCCGCA 60.319 55.000 22.85 6.60 0.00 5.69
1472 1506 7.547370 TGTTTATTGGGCAGGAAATTAATTTCG 59.453 33.333 26.71 18.29 45.37 3.46
1573 1626 4.600012 ATGTGCAAAGAAGCGTATGTAC 57.400 40.909 0.00 0.00 37.31 2.90
1639 1696 9.323985 GCATAATGCAATTTCCTTAAAACCATA 57.676 29.630 0.00 0.00 44.26 2.74
1742 1799 3.797039 TGAGACCAGCTGCACATATAAC 58.203 45.455 8.66 0.00 0.00 1.89
1749 1806 2.242113 CAGTTGAGACCAGCTGCAC 58.758 57.895 8.66 4.11 43.01 4.57
2015 2072 5.403166 CAGCACACACCTATCAAAACAAATG 59.597 40.000 0.00 0.00 0.00 2.32
2143 2200 5.944007 AGGTTCGGTAGACAATAAATTTGCT 59.056 36.000 0.00 0.00 0.00 3.91
2288 2345 7.096551 GCTAGAAATGTAAAGAAAAATGCCCA 58.903 34.615 0.00 0.00 0.00 5.36
2299 2362 6.817765 TGGTTCTTGGCTAGAAATGTAAAG 57.182 37.500 12.86 0.00 44.25 1.85
2564 2627 0.593128 CTAGCACAAACCTGGCACAC 59.407 55.000 0.00 0.00 0.00 3.82
2647 2710 0.608130 TCAATGACCTGAGGTGACCG 59.392 55.000 9.89 0.00 35.25 4.79
2775 2838 9.256477 CGATAAGGTGCTTATTTCAGTATTACA 57.744 33.333 0.00 0.00 36.87 2.41
2811 2874 2.420022 GGAAATACAGCGTGCTGAATGT 59.580 45.455 27.26 9.11 46.30 2.71
2822 2885 1.334869 CGCATCTTGGGGAAATACAGC 59.665 52.381 0.00 0.00 0.00 4.40
2848 2911 1.337260 CCAGAAGAAGGACGGACTGTG 60.337 57.143 0.00 0.00 0.00 3.66
2920 2983 3.666111 GCCAACGACCGTTCTAAATGTTC 60.666 47.826 4.68 0.00 36.00 3.18
2936 2999 1.459592 GTGTGTAGCTACAAGCCAACG 59.540 52.381 27.61 0.00 43.77 4.10
2939 3002 2.104111 ACAAGTGTGTAGCTACAAGCCA 59.896 45.455 27.61 18.42 43.77 4.75
3245 3433 9.976511 ACTTGAGGCATGAATCAATTTATTATG 57.023 29.630 11.92 3.26 35.04 1.90
3259 3607 6.406849 GCCCATAATAAAAACTTGAGGCATGA 60.407 38.462 0.00 0.00 36.67 3.07
3276 3624 3.378112 CGTGTTCTGTTCATGCCCATAAT 59.622 43.478 0.00 0.00 0.00 1.28
3277 3625 2.746904 CGTGTTCTGTTCATGCCCATAA 59.253 45.455 0.00 0.00 0.00 1.90
3278 3626 2.027653 TCGTGTTCTGTTCATGCCCATA 60.028 45.455 0.00 0.00 0.00 2.74
3342 3690 2.686405 GCATCATGAAAGCAGATGACCA 59.314 45.455 16.09 0.00 41.18 4.02
3567 3915 4.283212 GGAAATCACAACATTCAAGGGGAA 59.717 41.667 0.00 0.00 40.46 3.97
3675 4023 1.968540 GCCGAGTTCCAAGCTTGCT 60.969 57.895 21.43 12.69 0.00 3.91
3699 4047 6.875726 TCTCTTCATTCAATCAAGTTGACGAT 59.124 34.615 7.96 0.00 46.14 3.73
3713 4061 4.831674 TCTCAAGGCATCTCTTCATTCA 57.168 40.909 0.00 0.00 0.00 2.57
3742 4090 3.788333 TTATTTAGACGCCGCTACACT 57.212 42.857 0.00 0.00 0.00 3.55
3930 4288 4.758674 ACCAAACTGATCACAATGTCTCTG 59.241 41.667 0.00 0.00 0.00 3.35
3931 4289 4.978099 ACCAAACTGATCACAATGTCTCT 58.022 39.130 0.00 0.00 0.00 3.10
3932 4290 5.695851 AACCAAACTGATCACAATGTCTC 57.304 39.130 0.00 0.00 0.00 3.36
3933 4291 6.275335 CAAAACCAAACTGATCACAATGTCT 58.725 36.000 0.00 0.00 0.00 3.41
3934 4292 5.463061 CCAAAACCAAACTGATCACAATGTC 59.537 40.000 0.00 0.00 0.00 3.06
3935 4293 5.104982 ACCAAAACCAAACTGATCACAATGT 60.105 36.000 0.00 0.00 0.00 2.71
3936 4294 5.358922 ACCAAAACCAAACTGATCACAATG 58.641 37.500 0.00 0.00 0.00 2.82
3937 4295 5.612725 ACCAAAACCAAACTGATCACAAT 57.387 34.783 0.00 0.00 0.00 2.71
3938 4296 5.413309 AACCAAAACCAAACTGATCACAA 57.587 34.783 0.00 0.00 0.00 3.33
3963 4321 9.777843 GAACACGTTGAAACAAAAATATCATTC 57.222 29.630 0.00 0.00 0.00 2.67
4032 4390 1.021202 CTCGGTGCTGTTTTGGTTCA 58.979 50.000 0.00 0.00 0.00 3.18
4144 4550 3.643320 CTCTGCTATGTAACCATCCTGGA 59.357 47.826 0.00 0.00 40.96 3.86
4149 4555 6.109359 ACTTTGACTCTGCTATGTAACCATC 58.891 40.000 0.00 0.00 32.29 3.51
4150 4556 6.054860 ACTTTGACTCTGCTATGTAACCAT 57.945 37.500 0.00 0.00 34.97 3.55
4151 4557 5.483685 ACTTTGACTCTGCTATGTAACCA 57.516 39.130 0.00 0.00 0.00 3.67
4152 4558 6.872020 TGTAACTTTGACTCTGCTATGTAACC 59.128 38.462 0.00 0.00 0.00 2.85
4153 4559 7.599245 ACTGTAACTTTGACTCTGCTATGTAAC 59.401 37.037 0.00 0.00 0.00 2.50
4154 4560 7.598869 CACTGTAACTTTGACTCTGCTATGTAA 59.401 37.037 0.00 0.00 0.00 2.41
4155 4561 7.090808 CACTGTAACTTTGACTCTGCTATGTA 58.909 38.462 0.00 0.00 0.00 2.29
4156 4562 5.928839 CACTGTAACTTTGACTCTGCTATGT 59.071 40.000 0.00 0.00 0.00 2.29
4157 4563 5.163913 GCACTGTAACTTTGACTCTGCTATG 60.164 44.000 0.00 0.00 0.00 2.23
4158 4564 4.932200 GCACTGTAACTTTGACTCTGCTAT 59.068 41.667 0.00 0.00 0.00 2.97
4159 4565 4.202212 TGCACTGTAACTTTGACTCTGCTA 60.202 41.667 0.00 0.00 0.00 3.49
4160 4566 3.134458 GCACTGTAACTTTGACTCTGCT 58.866 45.455 0.00 0.00 0.00 4.24
4161 4567 2.872245 TGCACTGTAACTTTGACTCTGC 59.128 45.455 0.00 0.00 0.00 4.26
4162 4568 4.332543 TGTTGCACTGTAACTTTGACTCTG 59.667 41.667 10.83 0.00 0.00 3.35
4163 4569 4.513442 TGTTGCACTGTAACTTTGACTCT 58.487 39.130 10.83 0.00 0.00 3.24
4164 4570 4.875544 TGTTGCACTGTAACTTTGACTC 57.124 40.909 10.83 0.00 0.00 3.36
4165 4571 4.941263 TCTTGTTGCACTGTAACTTTGACT 59.059 37.500 10.83 0.00 0.00 3.41
4166 4572 5.229921 TCTTGTTGCACTGTAACTTTGAC 57.770 39.130 10.83 0.00 0.00 3.18
4167 4573 5.888691 TTCTTGTTGCACTGTAACTTTGA 57.111 34.783 10.83 4.49 0.00 2.69
4168 4574 5.861251 TGTTTCTTGTTGCACTGTAACTTTG 59.139 36.000 10.83 2.56 0.00 2.77
4169 4575 5.861787 GTGTTTCTTGTTGCACTGTAACTTT 59.138 36.000 10.83 0.00 0.00 2.66
4170 4576 5.183140 AGTGTTTCTTGTTGCACTGTAACTT 59.817 36.000 10.83 0.00 40.24 2.66
4171 4577 4.700213 AGTGTTTCTTGTTGCACTGTAACT 59.300 37.500 10.83 0.00 40.24 2.24
4172 4578 4.981794 AGTGTTTCTTGTTGCACTGTAAC 58.018 39.130 3.21 3.21 40.24 2.50
4173 4579 5.878116 AGTAGTGTTTCTTGTTGCACTGTAA 59.122 36.000 6.33 0.00 41.58 2.41
4174 4580 5.424757 AGTAGTGTTTCTTGTTGCACTGTA 58.575 37.500 6.33 0.00 41.58 2.74
4175 4581 4.261801 AGTAGTGTTTCTTGTTGCACTGT 58.738 39.130 6.33 0.00 41.58 3.55
4176 4582 4.882671 AGTAGTGTTTCTTGTTGCACTG 57.117 40.909 6.33 0.00 41.58 3.66
4177 4583 7.713507 TGTAATAGTAGTGTTTCTTGTTGCACT 59.286 33.333 0.00 0.00 43.55 4.40
4178 4584 7.857569 TGTAATAGTAGTGTTTCTTGTTGCAC 58.142 34.615 0.00 0.00 0.00 4.57
4179 4585 8.615878 ATGTAATAGTAGTGTTTCTTGTTGCA 57.384 30.769 0.00 0.00 0.00 4.08
4180 4586 9.329913 CAATGTAATAGTAGTGTTTCTTGTTGC 57.670 33.333 0.00 0.00 0.00 4.17
4189 4595 9.031360 CGCTATCAACAATGTAATAGTAGTGTT 57.969 33.333 13.68 0.00 0.00 3.32
4190 4596 8.410912 TCGCTATCAACAATGTAATAGTAGTGT 58.589 33.333 13.68 0.00 0.00 3.55
4191 4597 8.797266 TCGCTATCAACAATGTAATAGTAGTG 57.203 34.615 13.68 7.51 0.00 2.74
4192 4598 9.982651 ATTCGCTATCAACAATGTAATAGTAGT 57.017 29.630 13.68 2.43 0.00 2.73
4194 4600 9.419297 GGATTCGCTATCAACAATGTAATAGTA 57.581 33.333 13.68 4.41 34.77 1.82
4195 4601 7.931407 TGGATTCGCTATCAACAATGTAATAGT 59.069 33.333 13.68 0.00 34.77 2.12
4196 4602 8.310406 TGGATTCGCTATCAACAATGTAATAG 57.690 34.615 9.90 9.90 34.77 1.73
4197 4603 7.387673 CCTGGATTCGCTATCAACAATGTAATA 59.612 37.037 0.00 0.00 34.77 0.98
4198 4604 6.205464 CCTGGATTCGCTATCAACAATGTAAT 59.795 38.462 0.00 0.00 34.77 1.89
4199 4605 5.527214 CCTGGATTCGCTATCAACAATGTAA 59.473 40.000 0.00 0.00 34.77 2.41
4200 4606 5.056480 CCTGGATTCGCTATCAACAATGTA 58.944 41.667 0.00 0.00 34.77 2.29
4201 4607 3.879295 CCTGGATTCGCTATCAACAATGT 59.121 43.478 0.00 0.00 34.77 2.71
4202 4608 4.129380 TCCTGGATTCGCTATCAACAATG 58.871 43.478 0.00 0.00 34.77 2.82
4203 4609 4.384056 CTCCTGGATTCGCTATCAACAAT 58.616 43.478 0.00 0.00 34.77 2.71
4204 4610 3.432186 CCTCCTGGATTCGCTATCAACAA 60.432 47.826 0.00 0.00 34.77 2.83
4205 4611 2.103094 CCTCCTGGATTCGCTATCAACA 59.897 50.000 0.00 0.00 34.77 3.33
4206 4612 2.548920 CCCTCCTGGATTCGCTATCAAC 60.549 54.545 0.00 0.00 34.77 3.18
4207 4613 1.694150 CCCTCCTGGATTCGCTATCAA 59.306 52.381 0.00 0.00 34.77 2.57
4208 4614 1.342074 CCCTCCTGGATTCGCTATCA 58.658 55.000 0.00 0.00 34.77 2.15
4209 4615 1.343069 ACCCTCCTGGATTCGCTATC 58.657 55.000 0.00 0.00 38.00 2.08
4210 4616 1.807814 AACCCTCCTGGATTCGCTAT 58.192 50.000 0.00 0.00 38.00 2.97
4211 4617 2.037144 GTAACCCTCCTGGATTCGCTA 58.963 52.381 0.00 0.00 38.00 4.26
4212 4618 0.831307 GTAACCCTCCTGGATTCGCT 59.169 55.000 0.00 0.00 38.00 4.93
4213 4619 0.539986 TGTAACCCTCCTGGATTCGC 59.460 55.000 0.00 0.00 38.00 4.70
4214 4620 3.555168 GCTATGTAACCCTCCTGGATTCG 60.555 52.174 0.00 0.00 38.00 3.34
4215 4621 3.391296 TGCTATGTAACCCTCCTGGATTC 59.609 47.826 0.00 0.00 38.00 2.52
4216 4622 3.392616 CTGCTATGTAACCCTCCTGGATT 59.607 47.826 0.00 0.00 38.00 3.01
4217 4623 2.975489 CTGCTATGTAACCCTCCTGGAT 59.025 50.000 0.00 0.00 38.00 3.41
4218 4624 2.023404 TCTGCTATGTAACCCTCCTGGA 60.023 50.000 0.00 0.00 38.00 3.86
4219 4625 2.366916 CTCTGCTATGTAACCCTCCTGG 59.633 54.545 0.00 0.00 41.37 4.45
4220 4626 3.034635 ACTCTGCTATGTAACCCTCCTG 58.965 50.000 0.00 0.00 0.00 3.86
4243 4651 5.861787 GTGTTTCTTGTTGCACTGTAACTTT 59.138 36.000 10.83 0.00 0.00 2.66
4300 4711 4.388577 AACAACTCCTTATGCCCTCTTT 57.611 40.909 0.00 0.00 0.00 2.52
4346 4757 5.598005 TGAAATGTGAAAACTGAACCAGGAT 59.402 36.000 0.00 0.00 35.51 3.24
4394 4808 5.273674 TCAGCAAATGTCATCCACAAAAA 57.726 34.783 0.00 0.00 38.97 1.94
4437 4851 5.546526 TCAACTTTCAAAACCAAAACAGCT 58.453 33.333 0.00 0.00 0.00 4.24
4453 6229 6.473758 GGTCTAATAGACAACCCTCAACTTT 58.526 40.000 20.57 0.00 46.79 2.66
4457 6233 4.091549 ACGGTCTAATAGACAACCCTCAA 58.908 43.478 20.57 0.00 46.79 3.02
4468 6244 4.498323 GTGAACTACGCAACGGTCTAATAG 59.502 45.833 0.00 0.00 0.00 1.73
4477 6253 1.591158 ACAACTGTGAACTACGCAACG 59.409 47.619 0.00 0.00 38.59 4.10
4498 6281 7.813148 CCTCGAACTATCACTGAAGTCTAAAAA 59.187 37.037 0.00 0.00 0.00 1.94
4514 6297 7.598759 AGTCCATATTACAACCTCGAACTAT 57.401 36.000 0.00 0.00 0.00 2.12
4535 6318 9.606631 AAGGATCAACAACAATAGAGATAAGTC 57.393 33.333 0.00 0.00 0.00 3.01
4536 6319 9.965902 AAAGGATCAACAACAATAGAGATAAGT 57.034 29.630 0.00 0.00 0.00 2.24
4568 6351 2.905415 TGTGAAAATGCCCCAGATCT 57.095 45.000 0.00 0.00 0.00 2.75
4612 6397 4.202749 TGGGACAGAGGGAGTAACTTCTAA 60.203 45.833 0.00 0.00 0.00 2.10
4613 6398 3.335786 TGGGACAGAGGGAGTAACTTCTA 59.664 47.826 0.00 0.00 0.00 2.10
4614 6399 2.111972 TGGGACAGAGGGAGTAACTTCT 59.888 50.000 0.00 0.00 0.00 2.85
4615 6400 2.537143 TGGGACAGAGGGAGTAACTTC 58.463 52.381 0.00 0.00 0.00 3.01
4616 6401 2.715763 TGGGACAGAGGGAGTAACTT 57.284 50.000 0.00 0.00 0.00 2.66
4622 6407 8.894248 ATGTCATACATTATGGGACAGAGGGAG 61.894 44.444 16.89 0.00 37.35 4.30
4623 6408 7.156848 ATGTCATACATTATGGGACAGAGGGA 61.157 42.308 16.89 0.14 37.35 4.20
4624 6409 5.013495 ATGTCATACATTATGGGACAGAGGG 59.987 44.000 16.89 0.00 37.35 4.30
4625 6410 6.119240 ATGTCATACATTATGGGACAGAGG 57.881 41.667 16.89 0.00 37.35 3.69
4651 6436 8.427012 CGTTTTTAACACTAGCGTAGTATCAAA 58.573 33.333 0.00 0.00 37.23 2.69
4652 6437 7.594758 ACGTTTTTAACACTAGCGTAGTATCAA 59.405 33.333 0.00 0.00 37.23 2.57
4653 6438 7.083858 ACGTTTTTAACACTAGCGTAGTATCA 58.916 34.615 0.00 0.00 37.23 2.15
4654 6439 7.483059 AGACGTTTTTAACACTAGCGTAGTATC 59.517 37.037 0.00 0.00 37.23 2.24
4655 6440 7.308435 AGACGTTTTTAACACTAGCGTAGTAT 58.692 34.615 0.00 0.00 37.23 2.12
4656 6441 6.668323 AGACGTTTTTAACACTAGCGTAGTA 58.332 36.000 0.00 0.00 37.23 1.82
4657 6442 5.523369 AGACGTTTTTAACACTAGCGTAGT 58.477 37.500 0.00 0.00 40.28 2.73
4658 6443 6.443876 AAGACGTTTTTAACACTAGCGTAG 57.556 37.500 0.00 0.00 0.00 3.51
4659 6444 6.915300 TGTAAGACGTTTTTAACACTAGCGTA 59.085 34.615 0.00 0.00 0.00 4.42
4660 6445 5.748152 TGTAAGACGTTTTTAACACTAGCGT 59.252 36.000 0.00 0.00 0.00 5.07
4661 6446 6.201556 TGTAAGACGTTTTTAACACTAGCG 57.798 37.500 0.00 0.00 0.00 4.26
4668 6453 9.750882 GGTCTCATAATGTAAGACGTTTTTAAC 57.249 33.333 0.00 0.00 40.25 2.01
4669 6454 8.649841 CGGTCTCATAATGTAAGACGTTTTTAA 58.350 33.333 0.00 0.00 40.25 1.52
4670 6455 7.276218 CCGGTCTCATAATGTAAGACGTTTTTA 59.724 37.037 0.00 0.00 40.25 1.52
4671 6456 6.091713 CCGGTCTCATAATGTAAGACGTTTTT 59.908 38.462 0.00 0.00 40.25 1.94
4672 6457 5.579511 CCGGTCTCATAATGTAAGACGTTTT 59.420 40.000 0.00 0.00 40.25 2.43
4673 6458 5.107133 CCGGTCTCATAATGTAAGACGTTT 58.893 41.667 0.00 0.00 40.25 3.60
4674 6459 4.441079 CCCGGTCTCATAATGTAAGACGTT 60.441 45.833 0.00 0.00 40.25 3.99
4675 6460 3.067742 CCCGGTCTCATAATGTAAGACGT 59.932 47.826 0.00 0.00 40.25 4.34
4676 6461 3.552273 CCCCGGTCTCATAATGTAAGACG 60.552 52.174 0.00 0.00 40.25 4.18
4677 6462 3.244112 CCCCCGGTCTCATAATGTAAGAC 60.244 52.174 0.00 0.00 38.94 3.01
4678 6463 2.969950 CCCCCGGTCTCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4679 6464 2.969950 TCCCCCGGTCTCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4680 6465 2.969950 CTCCCCCGGTCTCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4681 6466 2.090943 ACTCCCCCGGTCTCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4682 6467 1.344087 ACTCCCCCGGTCTCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4683 6468 1.424638 ACTCCCCCGGTCTCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4684 6469 3.562108 ATACTCCCCCGGTCTCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4685 6470 3.339713 AATACTCCCCCGGTCTCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4686 6471 3.400322 AGTAATACTCCCCCGGTCTCATA 59.600 47.826 0.00 0.00 0.00 2.15
4687 6472 2.179424 AGTAATACTCCCCCGGTCTCAT 59.821 50.000 0.00 0.00 0.00 2.90
4688 6473 1.572415 AGTAATACTCCCCCGGTCTCA 59.428 52.381 0.00 0.00 0.00 3.27
4689 6474 2.237643 GAGTAATACTCCCCCGGTCTC 58.762 57.143 9.19 0.00 39.28 3.36
4690 6475 1.572415 TGAGTAATACTCCCCCGGTCT 59.428 52.381 16.89 0.00 44.44 3.85
4691 6476 2.077687 TGAGTAATACTCCCCCGGTC 57.922 55.000 16.89 0.00 44.44 4.79
4692 6477 2.179424 AGATGAGTAATACTCCCCCGGT 59.821 50.000 16.89 0.00 44.44 5.28
4693 6478 2.563179 CAGATGAGTAATACTCCCCCGG 59.437 54.545 16.89 0.00 44.44 5.73
4694 6479 3.231818 ACAGATGAGTAATACTCCCCCG 58.768 50.000 16.89 6.69 44.44 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.