Multiple sequence alignment - TraesCS3B01G146200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G146200 chr3B 100.000 3065 0 0 1 3065 135767862 135770926 0.000000e+00 5661.0
1 TraesCS3B01G146200 chr3B 98.127 2029 35 2 1037 3065 135813886 135815911 0.000000e+00 3533.0
2 TraesCS3B01G146200 chr3B 97.699 1956 33 5 444 2396 135710889 135712835 0.000000e+00 3352.0
3 TraesCS3B01G146200 chr3B 97.492 598 9 4 444 1041 135807829 135808420 0.000000e+00 1016.0
4 TraesCS3B01G146200 chr3B 98.305 59 1 0 2845 2903 429974305 429974247 1.500000e-18 104.0
5 TraesCS3B01G146200 chr3D 93.642 2375 95 19 463 2816 85826528 85828867 0.000000e+00 3498.0
6 TraesCS3B01G146200 chr3D 96.648 179 6 0 2810 2988 85835490 85835668 6.420000e-77 298.0
7 TraesCS3B01G146200 chr3D 98.305 59 1 0 2845 2903 331018734 331018676 1.500000e-18 104.0
8 TraesCS3B01G146200 chr3D 89.855 69 6 1 2101 2169 2399097 2399030 1.510000e-13 87.9
9 TraesCS3B01G146200 chr3A 93.165 1346 68 9 1736 3065 102389230 102390567 0.000000e+00 1954.0
10 TraesCS3B01G146200 chr3A 95.450 901 37 2 2168 3065 102437144 102438043 0.000000e+00 1434.0
11 TraesCS3B01G146200 chr3A 95.450 901 37 2 2168 3065 102492094 102492993 0.000000e+00 1434.0
12 TraesCS3B01G146200 chr3A 93.085 911 35 10 838 1747 102435841 102436724 0.000000e+00 1308.0
13 TraesCS3B01G146200 chr3A 92.645 911 39 11 838 1747 102388566 102389449 0.000000e+00 1286.0
14 TraesCS3B01G146200 chr3A 93.607 438 21 3 1736 2169 102436500 102436934 0.000000e+00 647.0
15 TraesCS3B01G146200 chr3A 93.607 438 21 3 1736 2169 102491450 102491884 0.000000e+00 647.0
16 TraesCS3B01G146200 chr3A 92.045 264 12 6 552 815 102435382 102435636 2.250000e-96 363.0
17 TraesCS3B01G146200 chr3A 91.700 253 12 6 552 804 102490151 102490394 2.930000e-90 342.0
18 TraesCS3B01G146200 chr3A 90.000 140 9 2 674 813 102388350 102388484 3.140000e-40 176.0
19 TraesCS3B01G146200 chr3A 96.610 59 2 0 2845 2903 447499191 447499133 6.990000e-17 99.0
20 TraesCS3B01G146200 chr2D 92.762 829 54 2 917 1745 393204782 393205604 0.000000e+00 1194.0
21 TraesCS3B01G146200 chr2D 92.838 754 54 0 992 1745 393069617 393070370 0.000000e+00 1094.0
22 TraesCS3B01G146200 chr2D 90.055 362 35 1 1736 2097 393070148 393070508 4.630000e-128 468.0
23 TraesCS3B01G146200 chr2D 92.222 90 5 1 2976 3065 55388149 55388236 3.210000e-25 126.0
24 TraesCS3B01G146200 chr1D 91.667 828 60 3 918 1745 113994937 113994119 0.000000e+00 1138.0
25 TraesCS3B01G146200 chr1B 90.821 828 70 2 918 1745 174252474 174251653 0.000000e+00 1103.0
26 TraesCS3B01G146200 chr1B 94.407 447 22 3 1 444 28045829 28045383 0.000000e+00 684.0
27 TraesCS3B01G146200 chr1B 93.049 446 28 2 1 444 17870554 17870998 0.000000e+00 649.0
28 TraesCS3B01G146200 chr1B 92.188 448 31 4 1 444 662849634 662849187 5.580000e-177 630.0
29 TraesCS3B01G146200 chr1B 91.832 453 31 5 1 448 131485906 131486357 7.210000e-176 627.0
30 TraesCS3B01G146200 chr1B 90.608 362 33 1 1736 2097 174251875 174251515 2.140000e-131 479.0
31 TraesCS3B01G146200 chr1B 93.103 87 4 1 2981 3065 264764277 264764363 3.210000e-25 126.0
32 TraesCS3B01G146200 chr2B 92.440 754 54 1 992 1745 464878518 464879268 0.000000e+00 1074.0
33 TraesCS3B01G146200 chr2B 88.811 858 66 13 915 1745 464898004 464898858 0.000000e+00 1026.0
34 TraesCS3B01G146200 chr2B 91.704 446 35 2 1 444 797707155 797707600 4.340000e-173 617.0
35 TraesCS3B01G146200 chr2B 90.331 362 34 1 1736 2097 464879046 464879406 9.950000e-130 473.0
36 TraesCS3B01G146200 chr7B 93.860 456 24 4 1 453 744074767 744075221 0.000000e+00 684.0
37 TraesCS3B01G146200 chr7B 94.131 443 23 2 3 443 664121913 664122354 0.000000e+00 671.0
38 TraesCS3B01G146200 chr1A 85.736 659 73 7 2194 2844 247806266 247805621 0.000000e+00 676.0
39 TraesCS3B01G146200 chr1A 96.154 52 2 0 2095 2146 247806619 247806568 5.450000e-13 86.1
40 TraesCS3B01G146200 chr4B 93.049 446 29 1 1 444 665553810 665553365 0.000000e+00 651.0
41 TraesCS3B01G146200 chr5B 92.188 448 31 3 1 444 296010168 296010615 5.580000e-177 630.0
42 TraesCS3B01G146200 chr5B 100.000 77 0 0 2989 3065 436623675 436623599 3.190000e-30 143.0
43 TraesCS3B01G146200 chr5D 79.214 611 82 20 2215 2796 29171350 29170756 1.720000e-102 383.0
44 TraesCS3B01G146200 chr5A 79.058 616 80 20 2215 2796 19985743 19985143 8.020000e-101 377.0
45 TraesCS3B01G146200 chr5A 79.190 543 64 20 2215 2733 19984375 19983858 6.330000e-87 331.0
46 TraesCS3B01G146200 chr4A 91.111 180 15 1 629 808 255587222 255587400 3.050000e-60 243.0
47 TraesCS3B01G146200 chr4A 91.228 171 15 0 463 633 252337424 252337594 1.840000e-57 233.0
48 TraesCS3B01G146200 chr7D 96.341 82 3 0 2984 3065 263971557 263971476 5.330000e-28 135.0
49 TraesCS3B01G146200 chr2A 97.436 78 2 0 2988 3065 637698091 637698168 1.920000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G146200 chr3B 135767862 135770926 3064 False 5661.000000 5661 100.000000 1 3065 1 chr3B.!!$F2 3064
1 TraesCS3B01G146200 chr3B 135813886 135815911 2025 False 3533.000000 3533 98.127000 1037 3065 1 chr3B.!!$F4 2028
2 TraesCS3B01G146200 chr3B 135710889 135712835 1946 False 3352.000000 3352 97.699000 444 2396 1 chr3B.!!$F1 1952
3 TraesCS3B01G146200 chr3B 135807829 135808420 591 False 1016.000000 1016 97.492000 444 1041 1 chr3B.!!$F3 597
4 TraesCS3B01G146200 chr3D 85826528 85828867 2339 False 3498.000000 3498 93.642000 463 2816 1 chr3D.!!$F1 2353
5 TraesCS3B01G146200 chr3A 102388350 102390567 2217 False 1138.666667 1954 91.936667 674 3065 3 chr3A.!!$F1 2391
6 TraesCS3B01G146200 chr3A 102435382 102438043 2661 False 938.000000 1434 93.546750 552 3065 4 chr3A.!!$F2 2513
7 TraesCS3B01G146200 chr3A 102490151 102492993 2842 False 807.666667 1434 93.585667 552 3065 3 chr3A.!!$F3 2513
8 TraesCS3B01G146200 chr2D 393204782 393205604 822 False 1194.000000 1194 92.762000 917 1745 1 chr2D.!!$F2 828
9 TraesCS3B01G146200 chr2D 393069617 393070508 891 False 781.000000 1094 91.446500 992 2097 2 chr2D.!!$F3 1105
10 TraesCS3B01G146200 chr1D 113994119 113994937 818 True 1138.000000 1138 91.667000 918 1745 1 chr1D.!!$R1 827
11 TraesCS3B01G146200 chr1B 174251515 174252474 959 True 791.000000 1103 90.714500 918 2097 2 chr1B.!!$R3 1179
12 TraesCS3B01G146200 chr2B 464898004 464898858 854 False 1026.000000 1026 88.811000 915 1745 1 chr2B.!!$F1 830
13 TraesCS3B01G146200 chr2B 464878518 464879406 888 False 773.500000 1074 91.385500 992 2097 2 chr2B.!!$F3 1105
14 TraesCS3B01G146200 chr1A 247805621 247806619 998 True 381.050000 676 90.945000 2095 2844 2 chr1A.!!$R1 749
15 TraesCS3B01G146200 chr5D 29170756 29171350 594 True 383.000000 383 79.214000 2215 2796 1 chr5D.!!$R1 581
16 TraesCS3B01G146200 chr5A 19983858 19985743 1885 True 354.000000 377 79.124000 2215 2796 2 chr5A.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.029834 GAAGACGGTAGCGCGGAATA 59.970 55.0 15.35 0.0 0.00 1.75 F
422 423 0.041684 TCTGATGCAGAGGTCAGGGA 59.958 55.0 13.65 0.0 41.64 4.20 F
424 425 0.252421 TGATGCAGAGGTCAGGGAGT 60.252 55.0 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2244 0.605319 CAGCGTGGGGTTGTGTATGT 60.605 55.000 0.00 0.00 0.0 2.29 R
1871 2426 1.939785 GCTGCGGATGTCGACGTAG 60.940 63.158 10.95 8.55 44.0 3.51 R
2462 5090 8.902806 TCGGCATGATGTTAGAAATTTAGAATT 58.097 29.630 0.00 0.00 0.0 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.354155 TCGTGTAGGAGTATGCGCG 59.646 57.895 0.00 0.00 39.67 6.86
19 20 1.063649 CGTGTAGGAGTATGCGCGT 59.936 57.895 8.43 7.55 34.66 6.01
20 21 0.524816 CGTGTAGGAGTATGCGCGTT 60.525 55.000 7.78 0.00 34.66 4.84
21 22 0.921347 GTGTAGGAGTATGCGCGTTG 59.079 55.000 7.78 0.00 0.00 4.10
22 23 0.528924 TGTAGGAGTATGCGCGTTGT 59.471 50.000 7.78 0.00 0.00 3.32
23 24 1.067425 TGTAGGAGTATGCGCGTTGTT 60.067 47.619 7.78 0.00 0.00 2.83
24 25 2.164017 TGTAGGAGTATGCGCGTTGTTA 59.836 45.455 7.78 0.00 0.00 2.41
25 26 2.596904 AGGAGTATGCGCGTTGTTAT 57.403 45.000 7.78 0.00 0.00 1.89
26 27 2.201732 AGGAGTATGCGCGTTGTTATG 58.798 47.619 7.78 0.00 0.00 1.90
27 28 1.260561 GGAGTATGCGCGTTGTTATGG 59.739 52.381 7.78 0.00 0.00 2.74
28 29 1.260561 GAGTATGCGCGTTGTTATGGG 59.739 52.381 7.78 0.00 0.00 4.00
29 30 0.316689 GTATGCGCGTTGTTATGGGC 60.317 55.000 7.78 0.00 46.31 5.36
31 32 2.563942 GCGCGTTGTTATGGGCAA 59.436 55.556 8.43 0.00 45.65 4.52
32 33 1.138671 GCGCGTTGTTATGGGCAAT 59.861 52.632 8.43 0.00 45.65 3.56
33 34 0.457681 GCGCGTTGTTATGGGCAATT 60.458 50.000 8.43 0.00 45.65 2.32
34 35 1.989430 CGCGTTGTTATGGGCAATTT 58.011 45.000 0.00 0.00 0.00 1.82
35 36 1.653114 CGCGTTGTTATGGGCAATTTG 59.347 47.619 0.00 0.00 0.00 2.32
36 37 1.999024 GCGTTGTTATGGGCAATTTGG 59.001 47.619 0.00 0.00 0.00 3.28
37 38 2.353208 GCGTTGTTATGGGCAATTTGGA 60.353 45.455 0.00 0.00 0.00 3.53
38 39 3.862642 GCGTTGTTATGGGCAATTTGGAA 60.863 43.478 0.00 0.00 0.00 3.53
39 40 4.502962 CGTTGTTATGGGCAATTTGGAAT 58.497 39.130 0.00 0.00 0.00 3.01
40 41 4.934602 CGTTGTTATGGGCAATTTGGAATT 59.065 37.500 0.00 0.00 0.00 2.17
41 42 5.163874 CGTTGTTATGGGCAATTTGGAATTG 60.164 40.000 8.62 8.62 0.00 2.32
54 55 8.667987 CAATTTGGAATTGCAGAAATGATTTG 57.332 30.769 0.00 0.00 0.00 2.32
55 56 6.804770 TTTGGAATTGCAGAAATGATTTGG 57.195 33.333 0.00 0.00 0.00 3.28
56 57 4.255301 TGGAATTGCAGAAATGATTTGGC 58.745 39.130 0.00 0.00 0.00 4.52
57 58 4.020039 TGGAATTGCAGAAATGATTTGGCT 60.020 37.500 11.04 0.00 0.00 4.75
58 59 4.939439 GGAATTGCAGAAATGATTTGGCTT 59.061 37.500 11.04 0.96 0.00 4.35
59 60 5.413523 GGAATTGCAGAAATGATTTGGCTTT 59.586 36.000 11.04 6.31 0.00 3.51
60 61 6.072342 GGAATTGCAGAAATGATTTGGCTTTT 60.072 34.615 11.04 6.05 0.00 2.27
61 62 7.119553 GGAATTGCAGAAATGATTTGGCTTTTA 59.880 33.333 11.04 0.00 0.00 1.52
62 63 7.982761 ATTGCAGAAATGATTTGGCTTTTAA 57.017 28.000 11.04 0.63 0.00 1.52
63 64 6.783892 TGCAGAAATGATTTGGCTTTTAAC 57.216 33.333 11.04 0.00 0.00 2.01
64 65 6.286758 TGCAGAAATGATTTGGCTTTTAACA 58.713 32.000 11.04 0.00 0.00 2.41
65 66 6.424509 TGCAGAAATGATTTGGCTTTTAACAG 59.575 34.615 11.04 0.00 0.00 3.16
66 67 6.646240 GCAGAAATGATTTGGCTTTTAACAGA 59.354 34.615 0.00 0.00 0.00 3.41
67 68 7.171337 GCAGAAATGATTTGGCTTTTAACAGAA 59.829 33.333 0.00 0.00 0.00 3.02
68 69 8.490355 CAGAAATGATTTGGCTTTTAACAGAAC 58.510 33.333 0.00 0.00 0.00 3.01
69 70 8.203485 AGAAATGATTTGGCTTTTAACAGAACA 58.797 29.630 0.00 0.00 0.00 3.18
70 71 8.729805 AAATGATTTGGCTTTTAACAGAACAA 57.270 26.923 0.00 0.00 0.00 2.83
71 72 7.713764 ATGATTTGGCTTTTAACAGAACAAC 57.286 32.000 0.00 0.00 0.00 3.32
72 73 6.634805 TGATTTGGCTTTTAACAGAACAACA 58.365 32.000 0.00 0.00 0.00 3.33
73 74 7.099764 TGATTTGGCTTTTAACAGAACAACAA 58.900 30.769 0.00 0.00 0.00 2.83
74 75 7.604164 TGATTTGGCTTTTAACAGAACAACAAA 59.396 29.630 0.00 0.00 0.00 2.83
75 76 7.913674 TTTGGCTTTTAACAGAACAACAAAT 57.086 28.000 0.00 0.00 0.00 2.32
76 77 9.606631 ATTTGGCTTTTAACAGAACAACAAATA 57.393 25.926 0.00 0.00 34.29 1.40
77 78 9.606631 TTTGGCTTTTAACAGAACAACAAATAT 57.393 25.926 0.00 0.00 0.00 1.28
78 79 9.606631 TTGGCTTTTAACAGAACAACAAATATT 57.393 25.926 0.00 0.00 0.00 1.28
79 80 9.255304 TGGCTTTTAACAGAACAACAAATATTC 57.745 29.630 0.00 0.00 0.00 1.75
80 81 9.255304 GGCTTTTAACAGAACAACAAATATTCA 57.745 29.630 0.00 0.00 0.00 2.57
102 103 3.651803 TTTTTGCAGGTGTTATTCCGG 57.348 42.857 0.00 0.00 0.00 5.14
103 104 1.540267 TTTGCAGGTGTTATTCCGGG 58.460 50.000 0.00 0.00 0.00 5.73
104 105 0.963355 TTGCAGGTGTTATTCCGGGC 60.963 55.000 0.00 0.00 0.00 6.13
105 106 1.077716 GCAGGTGTTATTCCGGGCT 60.078 57.895 0.00 0.00 0.00 5.19
106 107 0.179468 GCAGGTGTTATTCCGGGCTA 59.821 55.000 0.00 0.00 0.00 3.93
107 108 1.949465 CAGGTGTTATTCCGGGCTAC 58.051 55.000 0.00 0.00 0.00 3.58
108 109 1.208535 CAGGTGTTATTCCGGGCTACA 59.791 52.381 0.00 0.00 0.00 2.74
109 110 1.485066 AGGTGTTATTCCGGGCTACAG 59.515 52.381 0.00 0.00 0.00 2.74
110 111 1.296727 GTGTTATTCCGGGCTACAGC 58.703 55.000 0.00 0.00 41.14 4.40
111 112 0.906066 TGTTATTCCGGGCTACAGCA 59.094 50.000 0.00 0.00 44.36 4.41
112 113 1.296727 GTTATTCCGGGCTACAGCAC 58.703 55.000 0.00 0.00 44.36 4.40
113 114 1.134491 GTTATTCCGGGCTACAGCACT 60.134 52.381 0.00 0.00 43.67 4.40
114 115 0.464036 TATTCCGGGCTACAGCACTG 59.536 55.000 0.00 0.00 43.67 3.66
115 116 1.264749 ATTCCGGGCTACAGCACTGA 61.265 55.000 0.00 0.00 43.67 3.41
116 117 1.264749 TTCCGGGCTACAGCACTGAT 61.265 55.000 0.00 0.00 43.67 2.90
117 118 1.227380 CCGGGCTACAGCACTGATC 60.227 63.158 4.31 0.00 43.67 2.92
118 119 1.227380 CGGGCTACAGCACTGATCC 60.227 63.158 4.31 2.31 43.67 3.36
119 120 1.227380 GGGCTACAGCACTGATCCG 60.227 63.158 4.31 0.00 42.27 4.18
120 121 1.517832 GGCTACAGCACTGATCCGT 59.482 57.895 4.31 0.00 44.36 4.69
121 122 0.744874 GGCTACAGCACTGATCCGTA 59.255 55.000 4.31 0.00 44.36 4.02
122 123 1.341531 GGCTACAGCACTGATCCGTAT 59.658 52.381 4.31 0.00 44.36 3.06
123 124 2.398498 GCTACAGCACTGATCCGTATG 58.602 52.381 4.31 0.00 41.59 2.39
124 125 2.223829 GCTACAGCACTGATCCGTATGT 60.224 50.000 4.31 10.68 41.59 2.29
125 126 2.299993 ACAGCACTGATCCGTATGTG 57.700 50.000 4.31 0.00 0.00 3.21
126 127 1.134699 ACAGCACTGATCCGTATGTGG 60.135 52.381 4.31 0.00 0.00 4.17
127 128 1.134699 CAGCACTGATCCGTATGTGGT 60.135 52.381 0.00 0.00 41.02 4.16
128 129 1.137086 AGCACTGATCCGTATGTGGTC 59.863 52.381 0.00 0.00 36.59 4.02
129 130 1.806623 GCACTGATCCGTATGTGGTCC 60.807 57.143 0.00 0.00 0.00 4.46
130 131 1.757118 CACTGATCCGTATGTGGTCCT 59.243 52.381 0.00 0.00 0.00 3.85
131 132 2.168521 CACTGATCCGTATGTGGTCCTT 59.831 50.000 0.00 0.00 0.00 3.36
132 133 3.383505 CACTGATCCGTATGTGGTCCTTA 59.616 47.826 0.00 0.00 0.00 2.69
133 134 3.383825 ACTGATCCGTATGTGGTCCTTAC 59.616 47.826 0.00 0.00 0.00 2.34
134 135 3.637229 CTGATCCGTATGTGGTCCTTACT 59.363 47.826 0.00 0.00 0.00 2.24
135 136 3.635373 TGATCCGTATGTGGTCCTTACTC 59.365 47.826 0.00 0.00 0.00 2.59
136 137 3.090210 TCCGTATGTGGTCCTTACTCA 57.910 47.619 0.00 0.00 0.00 3.41
137 138 2.756760 TCCGTATGTGGTCCTTACTCAC 59.243 50.000 0.00 0.00 0.00 3.51
138 139 2.758979 CCGTATGTGGTCCTTACTCACT 59.241 50.000 0.00 0.00 31.73 3.41
139 140 3.181489 CCGTATGTGGTCCTTACTCACTC 60.181 52.174 0.00 0.00 31.73 3.51
140 141 3.181489 CGTATGTGGTCCTTACTCACTCC 60.181 52.174 0.00 0.00 31.73 3.85
141 142 1.254026 TGTGGTCCTTACTCACTCCG 58.746 55.000 0.00 0.00 31.73 4.63
142 143 1.202964 TGTGGTCCTTACTCACTCCGA 60.203 52.381 0.00 0.00 31.73 4.55
143 144 1.201880 GTGGTCCTTACTCACTCCGAC 59.798 57.143 0.00 0.00 0.00 4.79
144 145 0.450983 GGTCCTTACTCACTCCGACG 59.549 60.000 0.00 0.00 0.00 5.12
145 146 0.450983 GTCCTTACTCACTCCGACGG 59.549 60.000 7.84 7.84 0.00 4.79
146 147 0.325933 TCCTTACTCACTCCGACGGA 59.674 55.000 17.28 17.28 0.00 4.69
154 155 3.522731 CTCCGACGGAGGCCAGAG 61.523 72.222 32.26 9.25 45.43 3.35
155 156 3.997400 CTCCGACGGAGGCCAGAGA 62.997 68.421 32.26 0.78 45.43 3.10
156 157 3.522731 CCGACGGAGGCCAGAGAG 61.523 72.222 8.64 0.00 0.00 3.20
157 158 4.200283 CGACGGAGGCCAGAGAGC 62.200 72.222 5.01 0.00 0.00 4.09
158 159 4.200283 GACGGAGGCCAGAGAGCG 62.200 72.222 5.01 0.00 0.00 5.03
160 161 3.764466 CGGAGGCCAGAGAGCGTT 61.764 66.667 5.01 0.00 0.00 4.84
161 162 2.665603 GGAGGCCAGAGAGCGTTT 59.334 61.111 5.01 0.00 0.00 3.60
162 163 1.743252 GGAGGCCAGAGAGCGTTTG 60.743 63.158 5.01 0.00 0.00 2.93
163 164 1.743252 GAGGCCAGAGAGCGTTTGG 60.743 63.158 5.01 0.00 35.06 3.28
164 165 2.032681 GGCCAGAGAGCGTTTGGT 59.967 61.111 0.00 0.00 34.43 3.67
165 166 1.600916 GGCCAGAGAGCGTTTGGTT 60.601 57.895 0.00 0.00 34.43 3.67
166 167 0.321298 GGCCAGAGAGCGTTTGGTTA 60.321 55.000 0.00 0.00 34.43 2.85
167 168 0.796927 GCCAGAGAGCGTTTGGTTAC 59.203 55.000 1.47 0.00 34.43 2.50
168 169 1.608283 GCCAGAGAGCGTTTGGTTACT 60.608 52.381 1.47 0.00 34.43 2.24
169 170 2.069273 CCAGAGAGCGTTTGGTTACTG 58.931 52.381 0.00 0.00 0.00 2.74
170 171 2.069273 CAGAGAGCGTTTGGTTACTGG 58.931 52.381 0.00 0.00 0.00 4.00
171 172 1.968493 AGAGAGCGTTTGGTTACTGGA 59.032 47.619 0.00 0.00 0.00 3.86
172 173 2.567615 AGAGAGCGTTTGGTTACTGGAT 59.432 45.455 0.00 0.00 0.00 3.41
173 174 2.930682 GAGAGCGTTTGGTTACTGGATC 59.069 50.000 0.00 0.00 0.00 3.36
174 175 2.567615 AGAGCGTTTGGTTACTGGATCT 59.432 45.455 0.00 0.00 0.00 2.75
175 176 2.673368 GAGCGTTTGGTTACTGGATCTG 59.327 50.000 0.00 0.00 0.00 2.90
176 177 2.038557 AGCGTTTGGTTACTGGATCTGT 59.961 45.455 0.00 0.00 0.00 3.41
177 178 2.415512 GCGTTTGGTTACTGGATCTGTC 59.584 50.000 0.00 0.00 0.00 3.51
178 179 3.000727 CGTTTGGTTACTGGATCTGTCC 58.999 50.000 0.00 0.00 45.31 4.02
187 188 2.591915 GGATCTGTCCGGTGGAAGA 58.408 57.895 0.00 0.67 34.13 2.87
188 189 0.175989 GGATCTGTCCGGTGGAAGAC 59.824 60.000 0.00 0.00 34.13 3.01
189 190 0.179134 GATCTGTCCGGTGGAAGACG 60.179 60.000 0.00 0.00 35.71 4.18
194 195 2.183555 CCGGTGGAAGACGGTAGC 59.816 66.667 0.00 0.00 44.85 3.58
195 196 2.202570 CGGTGGAAGACGGTAGCG 60.203 66.667 13.69 13.69 0.00 4.26
196 197 2.508663 GGTGGAAGACGGTAGCGC 60.509 66.667 15.35 0.00 0.00 5.92
197 198 2.879462 GTGGAAGACGGTAGCGCG 60.879 66.667 15.35 0.00 0.00 6.86
198 199 4.124351 TGGAAGACGGTAGCGCGG 62.124 66.667 15.35 0.00 0.00 6.46
199 200 3.818787 GGAAGACGGTAGCGCGGA 61.819 66.667 15.35 0.00 0.00 5.54
200 201 2.180017 GAAGACGGTAGCGCGGAA 59.820 61.111 15.35 0.00 0.00 4.30
201 202 1.226888 GAAGACGGTAGCGCGGAAT 60.227 57.895 15.35 0.00 0.00 3.01
202 203 0.029834 GAAGACGGTAGCGCGGAATA 59.970 55.000 15.35 0.00 0.00 1.75
203 204 0.672342 AAGACGGTAGCGCGGAATAT 59.328 50.000 15.35 0.00 0.00 1.28
204 205 0.240411 AGACGGTAGCGCGGAATATC 59.760 55.000 15.35 2.33 0.00 1.63
205 206 0.240411 GACGGTAGCGCGGAATATCT 59.760 55.000 15.35 0.00 0.00 1.98
206 207 0.672342 ACGGTAGCGCGGAATATCTT 59.328 50.000 15.35 0.00 0.00 2.40
207 208 1.335689 ACGGTAGCGCGGAATATCTTC 60.336 52.381 15.35 0.00 0.00 2.87
208 209 1.335597 CGGTAGCGCGGAATATCTTCA 60.336 52.381 8.83 0.00 32.70 3.02
209 210 2.750948 GGTAGCGCGGAATATCTTCAA 58.249 47.619 8.83 0.00 32.70 2.69
210 211 2.475487 GGTAGCGCGGAATATCTTCAAC 59.525 50.000 8.83 0.00 32.70 3.18
211 212 1.583054 AGCGCGGAATATCTTCAACC 58.417 50.000 8.83 0.00 32.70 3.77
212 213 0.232303 GCGCGGAATATCTTCAACCG 59.768 55.000 8.83 0.00 45.26 4.44
213 214 0.859232 CGCGGAATATCTTCAACCGG 59.141 55.000 0.00 0.00 43.15 5.28
214 215 1.805120 CGCGGAATATCTTCAACCGGT 60.805 52.381 0.00 0.00 43.15 5.28
215 216 2.285977 GCGGAATATCTTCAACCGGTT 58.714 47.619 15.86 15.86 43.15 4.44
216 217 2.681344 GCGGAATATCTTCAACCGGTTT 59.319 45.455 19.55 5.23 43.15 3.27
217 218 3.486875 GCGGAATATCTTCAACCGGTTTG 60.487 47.826 19.55 13.53 43.15 2.93
218 219 3.064820 CGGAATATCTTCAACCGGTTTGG 59.935 47.826 19.55 7.84 39.92 3.28
219 220 4.266714 GGAATATCTTCAACCGGTTTGGA 58.733 43.478 19.55 15.86 35.52 3.53
220 221 4.887655 GGAATATCTTCAACCGGTTTGGAT 59.112 41.667 19.55 21.16 35.52 3.41
221 222 5.221048 GGAATATCTTCAACCGGTTTGGATG 60.221 44.000 19.55 14.79 41.73 3.51
222 223 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
223 224 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
224 225 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
225 226 1.969064 CAACCGGTTTGGATGGCGA 60.969 57.895 19.55 0.00 42.00 5.54
226 227 1.001393 AACCGGTTTGGATGGCGAT 60.001 52.632 15.86 0.00 42.00 4.58
227 228 1.029947 AACCGGTTTGGATGGCGATC 61.030 55.000 15.86 0.00 42.00 3.69
228 229 1.451207 CCGGTTTGGATGGCGATCA 60.451 57.895 11.07 0.00 42.00 2.92
229 230 0.819259 CCGGTTTGGATGGCGATCAT 60.819 55.000 11.07 0.00 42.00 2.45
230 231 0.308684 CGGTTTGGATGGCGATCATG 59.691 55.000 11.07 0.00 35.97 3.07
231 232 1.392589 GGTTTGGATGGCGATCATGT 58.607 50.000 11.07 0.00 35.97 3.21
232 233 2.571212 GGTTTGGATGGCGATCATGTA 58.429 47.619 11.07 0.00 35.97 2.29
233 234 2.948979 GGTTTGGATGGCGATCATGTAA 59.051 45.455 11.07 0.00 35.97 2.41
234 235 3.569701 GGTTTGGATGGCGATCATGTAAT 59.430 43.478 11.07 0.00 35.97 1.89
235 236 4.759693 GGTTTGGATGGCGATCATGTAATA 59.240 41.667 11.07 0.00 35.97 0.98
236 237 5.106555 GGTTTGGATGGCGATCATGTAATAG 60.107 44.000 11.07 0.00 35.97 1.73
237 238 4.206477 TGGATGGCGATCATGTAATAGG 57.794 45.455 11.07 0.00 35.97 2.57
238 239 3.837731 TGGATGGCGATCATGTAATAGGA 59.162 43.478 11.07 0.00 35.97 2.94
239 240 4.471025 TGGATGGCGATCATGTAATAGGAT 59.529 41.667 11.07 0.00 35.97 3.24
240 241 5.660864 TGGATGGCGATCATGTAATAGGATA 59.339 40.000 11.07 0.00 35.97 2.59
241 242 6.183360 TGGATGGCGATCATGTAATAGGATAG 60.183 42.308 11.07 0.00 35.97 2.08
242 243 6.040955 GGATGGCGATCATGTAATAGGATAGA 59.959 42.308 11.07 0.00 35.97 1.98
243 244 6.208988 TGGCGATCATGTAATAGGATAGAC 57.791 41.667 0.00 0.00 31.78 2.59
244 245 5.714806 TGGCGATCATGTAATAGGATAGACA 59.285 40.000 0.00 0.00 37.79 3.41
245 246 6.381133 TGGCGATCATGTAATAGGATAGACAT 59.619 38.462 0.00 0.00 35.69 3.06
246 247 7.093333 TGGCGATCATGTAATAGGATAGACATT 60.093 37.037 0.00 0.00 35.69 2.71
247 248 7.766278 GGCGATCATGTAATAGGATAGACATTT 59.234 37.037 0.00 0.00 31.52 2.32
248 249 9.803315 GCGATCATGTAATAGGATAGACATTTA 57.197 33.333 0.00 0.00 31.03 1.40
271 272 6.759497 AGTTTACCTATCTTTCATTGTGCC 57.241 37.500 0.00 0.00 0.00 5.01
272 273 6.245408 AGTTTACCTATCTTTCATTGTGCCA 58.755 36.000 0.00 0.00 0.00 4.92
273 274 6.375455 AGTTTACCTATCTTTCATTGTGCCAG 59.625 38.462 0.00 0.00 0.00 4.85
274 275 3.019564 ACCTATCTTTCATTGTGCCAGC 58.980 45.455 0.00 0.00 0.00 4.85
275 276 2.360165 CCTATCTTTCATTGTGCCAGCC 59.640 50.000 0.00 0.00 0.00 4.85
276 277 0.813184 ATCTTTCATTGTGCCAGCCG 59.187 50.000 0.00 0.00 0.00 5.52
277 278 1.213537 CTTTCATTGTGCCAGCCGG 59.786 57.895 0.00 0.00 0.00 6.13
278 279 1.526575 CTTTCATTGTGCCAGCCGGT 61.527 55.000 1.90 0.00 33.28 5.28
279 280 1.112315 TTTCATTGTGCCAGCCGGTT 61.112 50.000 1.90 0.00 33.28 4.44
280 281 1.804396 TTCATTGTGCCAGCCGGTTG 61.804 55.000 11.98 11.98 33.28 3.77
281 282 2.203480 ATTGTGCCAGCCGGTTGT 60.203 55.556 17.69 0.00 33.28 3.32
282 283 2.563798 ATTGTGCCAGCCGGTTGTG 61.564 57.895 17.69 9.73 33.28 3.33
291 292 2.733945 CCGGTTGTGGCTTTTGGG 59.266 61.111 0.00 0.00 0.00 4.12
292 293 2.131067 CCGGTTGTGGCTTTTGGGT 61.131 57.895 0.00 0.00 0.00 4.51
293 294 1.681486 CCGGTTGTGGCTTTTGGGTT 61.681 55.000 0.00 0.00 0.00 4.11
294 295 0.176910 CGGTTGTGGCTTTTGGGTTT 59.823 50.000 0.00 0.00 0.00 3.27
295 296 1.406205 CGGTTGTGGCTTTTGGGTTTT 60.406 47.619 0.00 0.00 0.00 2.43
296 297 2.013400 GGTTGTGGCTTTTGGGTTTTG 58.987 47.619 0.00 0.00 0.00 2.44
297 298 2.616765 GGTTGTGGCTTTTGGGTTTTGT 60.617 45.455 0.00 0.00 0.00 2.83
298 299 3.078097 GTTGTGGCTTTTGGGTTTTGTT 58.922 40.909 0.00 0.00 0.00 2.83
299 300 3.425162 TGTGGCTTTTGGGTTTTGTTT 57.575 38.095 0.00 0.00 0.00 2.83
300 301 3.756117 TGTGGCTTTTGGGTTTTGTTTT 58.244 36.364 0.00 0.00 0.00 2.43
301 302 4.906618 TGTGGCTTTTGGGTTTTGTTTTA 58.093 34.783 0.00 0.00 0.00 1.52
302 303 4.695928 TGTGGCTTTTGGGTTTTGTTTTAC 59.304 37.500 0.00 0.00 0.00 2.01
303 304 4.695928 GTGGCTTTTGGGTTTTGTTTTACA 59.304 37.500 0.00 0.00 0.00 2.41
304 305 4.938226 TGGCTTTTGGGTTTTGTTTTACAG 59.062 37.500 0.00 0.00 0.00 2.74
305 306 4.201871 GGCTTTTGGGTTTTGTTTTACAGC 60.202 41.667 0.00 0.00 0.00 4.40
306 307 4.634004 GCTTTTGGGTTTTGTTTTACAGCT 59.366 37.500 0.00 0.00 0.00 4.24
307 308 5.447144 GCTTTTGGGTTTTGTTTTACAGCTG 60.447 40.000 13.48 13.48 0.00 4.24
308 309 5.407407 TTTGGGTTTTGTTTTACAGCTGA 57.593 34.783 23.35 0.48 0.00 4.26
309 310 4.379339 TGGGTTTTGTTTTACAGCTGAC 57.621 40.909 23.35 8.67 0.00 3.51
310 311 3.181495 TGGGTTTTGTTTTACAGCTGACG 60.181 43.478 23.35 0.00 0.00 4.35
311 312 2.787129 GGTTTTGTTTTACAGCTGACGC 59.213 45.455 23.35 6.17 0.00 5.19
313 314 3.602390 TTTGTTTTACAGCTGACGCTC 57.398 42.857 23.35 8.26 45.15 5.03
314 315 2.526304 TGTTTTACAGCTGACGCTCT 57.474 45.000 23.35 0.00 45.15 4.09
315 316 3.653539 TGTTTTACAGCTGACGCTCTA 57.346 42.857 23.35 0.00 45.15 2.43
316 317 3.575630 TGTTTTACAGCTGACGCTCTAG 58.424 45.455 23.35 0.00 45.15 2.43
317 318 2.924290 GTTTTACAGCTGACGCTCTAGG 59.076 50.000 23.35 0.00 45.15 3.02
318 319 1.835494 TTACAGCTGACGCTCTAGGT 58.165 50.000 23.35 0.00 45.15 3.08
319 320 1.095600 TACAGCTGACGCTCTAGGTG 58.904 55.000 23.35 0.00 45.15 4.00
320 321 0.609406 ACAGCTGACGCTCTAGGTGA 60.609 55.000 23.35 0.00 45.15 4.02
321 322 0.100325 CAGCTGACGCTCTAGGTGAG 59.900 60.000 8.42 0.00 45.15 3.51
331 332 3.435105 CTCTAGGTGAGCTAGCTGTTG 57.565 52.381 24.99 6.21 37.75 3.33
332 333 1.478510 TCTAGGTGAGCTAGCTGTTGC 59.521 52.381 24.99 8.22 37.75 4.17
333 334 4.745819 CTCTAGGTGAGCTAGCTGTTGCT 61.746 52.174 24.99 9.85 43.36 3.91
334 335 6.182105 CTCTAGGTGAGCTAGCTGTTGCTT 62.182 50.000 24.99 8.01 42.05 3.91
335 336 7.583898 CTCTAGGTGAGCTAGCTGTTGCTTT 62.584 48.000 24.99 3.52 42.05 3.51
336 337 8.955133 CTCTAGGTGAGCTAGCTGTTGCTTTT 62.955 46.154 24.99 0.00 42.05 2.27
346 347 4.505301 GCTGTTGCTTTTGTTTGAAGAC 57.495 40.909 0.00 0.00 36.03 3.01
347 348 3.000773 GCTGTTGCTTTTGTTTGAAGACG 60.001 43.478 0.00 0.00 36.03 4.18
348 349 4.165779 CTGTTGCTTTTGTTTGAAGACGT 58.834 39.130 0.00 0.00 0.00 4.34
349 350 4.551388 TGTTGCTTTTGTTTGAAGACGTT 58.449 34.783 0.00 0.00 0.00 3.99
350 351 5.700846 TGTTGCTTTTGTTTGAAGACGTTA 58.299 33.333 0.00 0.00 0.00 3.18
351 352 6.150318 TGTTGCTTTTGTTTGAAGACGTTAA 58.850 32.000 0.00 0.00 0.00 2.01
352 353 6.306837 TGTTGCTTTTGTTTGAAGACGTTAAG 59.693 34.615 0.00 0.00 0.00 1.85
353 354 6.184580 TGCTTTTGTTTGAAGACGTTAAGA 57.815 33.333 0.00 0.00 0.00 2.10
354 355 6.025280 TGCTTTTGTTTGAAGACGTTAAGAC 58.975 36.000 0.00 0.00 0.00 3.01
355 356 5.454554 GCTTTTGTTTGAAGACGTTAAGACC 59.545 40.000 0.00 0.00 0.00 3.85
356 357 6.677187 GCTTTTGTTTGAAGACGTTAAGACCT 60.677 38.462 0.00 0.00 0.00 3.85
357 358 6.746745 TTTGTTTGAAGACGTTAAGACCTT 57.253 33.333 0.00 0.00 0.00 3.50
358 359 5.728351 TGTTTGAAGACGTTAAGACCTTG 57.272 39.130 0.00 0.00 0.00 3.61
359 360 5.180271 TGTTTGAAGACGTTAAGACCTTGT 58.820 37.500 0.00 0.00 0.00 3.16
360 361 5.644636 TGTTTGAAGACGTTAAGACCTTGTT 59.355 36.000 0.00 0.00 0.00 2.83
361 362 5.728351 TTGAAGACGTTAAGACCTTGTTG 57.272 39.130 0.00 0.00 0.00 3.33
362 363 5.013568 TGAAGACGTTAAGACCTTGTTGA 57.986 39.130 0.00 0.00 0.00 3.18
363 364 5.047847 TGAAGACGTTAAGACCTTGTTGAG 58.952 41.667 0.00 0.00 0.00 3.02
364 365 4.931661 AGACGTTAAGACCTTGTTGAGA 57.068 40.909 0.00 0.00 0.00 3.27
365 366 4.618965 AGACGTTAAGACCTTGTTGAGAC 58.381 43.478 0.00 0.00 0.00 3.36
366 367 3.725490 ACGTTAAGACCTTGTTGAGACC 58.275 45.455 0.00 0.00 0.00 3.85
367 368 3.387050 ACGTTAAGACCTTGTTGAGACCT 59.613 43.478 0.00 0.00 0.00 3.85
368 369 4.586001 ACGTTAAGACCTTGTTGAGACCTA 59.414 41.667 0.00 0.00 0.00 3.08
369 370 5.245526 ACGTTAAGACCTTGTTGAGACCTAT 59.754 40.000 0.00 0.00 0.00 2.57
370 371 6.164176 CGTTAAGACCTTGTTGAGACCTATT 58.836 40.000 0.00 0.00 0.00 1.73
371 372 6.649557 CGTTAAGACCTTGTTGAGACCTATTT 59.350 38.462 0.00 0.00 0.00 1.40
372 373 7.816031 CGTTAAGACCTTGTTGAGACCTATTTA 59.184 37.037 0.00 0.00 0.00 1.40
373 374 8.933807 GTTAAGACCTTGTTGAGACCTATTTAC 58.066 37.037 0.00 0.00 0.00 2.01
374 375 6.936968 AGACCTTGTTGAGACCTATTTACT 57.063 37.500 0.00 0.00 0.00 2.24
375 376 7.317722 AGACCTTGTTGAGACCTATTTACTT 57.682 36.000 0.00 0.00 0.00 2.24
376 377 7.746703 AGACCTTGTTGAGACCTATTTACTTT 58.253 34.615 0.00 0.00 0.00 2.66
377 378 8.218488 AGACCTTGTTGAGACCTATTTACTTTT 58.782 33.333 0.00 0.00 0.00 2.27
378 379 8.762481 ACCTTGTTGAGACCTATTTACTTTTT 57.238 30.769 0.00 0.00 0.00 1.94
379 380 9.856162 ACCTTGTTGAGACCTATTTACTTTTTA 57.144 29.630 0.00 0.00 0.00 1.52
397 398 7.216920 CTTTTTAATAAAAGTGGCCGTATGC 57.783 36.000 0.00 0.00 43.34 3.14
398 399 5.899120 TTTAATAAAAGTGGCCGTATGCA 57.101 34.783 0.00 0.00 43.89 3.96
399 400 6.458232 TTTAATAAAAGTGGCCGTATGCAT 57.542 33.333 3.79 3.79 43.89 3.96
400 401 6.458232 TTAATAAAAGTGGCCGTATGCATT 57.542 33.333 3.54 0.00 43.89 3.56
401 402 2.652941 AAAAGTGGCCGTATGCATTG 57.347 45.000 3.54 0.00 43.89 2.82
402 403 1.832883 AAAGTGGCCGTATGCATTGA 58.167 45.000 3.54 0.00 43.89 2.57
403 404 2.057137 AAGTGGCCGTATGCATTGAT 57.943 45.000 3.54 0.00 43.89 2.57
404 405 1.597742 AGTGGCCGTATGCATTGATC 58.402 50.000 3.54 0.00 43.89 2.92
405 406 1.141657 AGTGGCCGTATGCATTGATCT 59.858 47.619 3.54 0.00 43.89 2.75
406 407 1.265095 GTGGCCGTATGCATTGATCTG 59.735 52.381 3.54 0.00 43.89 2.90
407 408 1.140652 TGGCCGTATGCATTGATCTGA 59.859 47.619 3.54 0.00 43.89 3.27
408 409 2.224597 TGGCCGTATGCATTGATCTGAT 60.225 45.455 3.54 0.00 43.89 2.90
409 410 2.161012 GGCCGTATGCATTGATCTGATG 59.839 50.000 3.54 0.00 43.89 3.07
416 417 2.573369 GCATTGATCTGATGCAGAGGT 58.427 47.619 21.87 0.00 46.96 3.85
417 418 2.548904 GCATTGATCTGATGCAGAGGTC 59.451 50.000 21.87 0.00 46.96 3.85
418 419 3.805207 CATTGATCTGATGCAGAGGTCA 58.195 45.455 7.27 7.27 44.08 4.02
419 420 3.538634 TTGATCTGATGCAGAGGTCAG 57.461 47.619 10.50 9.55 44.08 3.51
420 421 1.761198 TGATCTGATGCAGAGGTCAGG 59.239 52.381 13.65 0.00 44.08 3.86
421 422 1.070445 GATCTGATGCAGAGGTCAGGG 59.930 57.143 13.65 0.00 44.08 4.45
422 423 0.041684 TCTGATGCAGAGGTCAGGGA 59.958 55.000 13.65 0.00 41.64 4.20
423 424 0.464870 CTGATGCAGAGGTCAGGGAG 59.535 60.000 7.09 0.00 38.50 4.30
424 425 0.252421 TGATGCAGAGGTCAGGGAGT 60.252 55.000 0.00 0.00 0.00 3.85
425 426 0.463620 GATGCAGAGGTCAGGGAGTC 59.536 60.000 0.00 0.00 0.00 3.36
426 427 0.980231 ATGCAGAGGTCAGGGAGTCC 60.980 60.000 0.00 0.00 0.00 3.85
427 428 2.363172 GCAGAGGTCAGGGAGTCCC 61.363 68.421 21.81 21.81 45.90 4.46
439 440 2.281539 GGAGTCCCCCTTTTCGAAAA 57.718 50.000 21.35 21.35 0.00 2.29
440 441 2.589720 GGAGTCCCCCTTTTCGAAAAA 58.410 47.619 22.67 6.34 0.00 1.94
472 473 1.009829 GGATGCCGATGACAGACAAC 58.990 55.000 0.00 0.00 0.00 3.32
842 1029 2.337532 CGGGTCCGTCTGTCGTTT 59.662 61.111 0.55 0.00 37.94 3.60
843 1030 1.300388 CGGGTCCGTCTGTCGTTTT 60.300 57.895 0.55 0.00 37.94 2.43
873 1060 2.484203 GGTCCGTCTCTCGTTCGG 59.516 66.667 0.00 0.00 44.76 4.30
1129 1355 2.246739 AACGTCGTCTCGTCCGTCA 61.247 57.895 0.00 0.00 43.38 4.35
1130 1356 1.775039 AACGTCGTCTCGTCCGTCAA 61.775 55.000 0.00 0.00 43.38 3.18
1455 1797 4.388499 AAGCCGGCCGACGTTGAT 62.388 61.111 30.73 4.60 42.24 2.57
1871 2426 0.169009 GCGGCTTCTTTGATCACCAC 59.831 55.000 0.00 0.00 0.00 4.16
1884 2439 0.806868 TCACCACTACGTCGACATCC 59.193 55.000 17.16 0.00 0.00 3.51
2016 2784 1.302832 GGTCATGATCCATCGGCCC 60.303 63.158 0.00 0.00 0.00 5.80
2085 2864 5.989249 TGAGAATTGTTTGAGTCACAATCG 58.011 37.500 8.87 0.00 42.80 3.34
2462 5090 3.369052 CGATGCCACCAAACTAACCTAGA 60.369 47.826 0.00 0.00 0.00 2.43
2966 5608 7.858052 AAAGAAAACTGCAATGATAACTTCG 57.142 32.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.354155 CGCGCATACTCCTACACGA 59.646 57.895 8.75 0.00 0.00 4.35
1 2 0.524816 AACGCGCATACTCCTACACG 60.525 55.000 5.73 0.00 0.00 4.49
2 3 0.921347 CAACGCGCATACTCCTACAC 59.079 55.000 5.73 0.00 0.00 2.90
3 4 0.528924 ACAACGCGCATACTCCTACA 59.471 50.000 5.73 0.00 0.00 2.74
4 5 1.636988 AACAACGCGCATACTCCTAC 58.363 50.000 5.73 0.00 0.00 3.18
5 6 3.377439 CATAACAACGCGCATACTCCTA 58.623 45.455 5.73 0.00 0.00 2.94
6 7 2.201732 CATAACAACGCGCATACTCCT 58.798 47.619 5.73 0.00 0.00 3.69
7 8 1.260561 CCATAACAACGCGCATACTCC 59.739 52.381 5.73 0.00 0.00 3.85
8 9 1.260561 CCCATAACAACGCGCATACTC 59.739 52.381 5.73 0.00 0.00 2.59
9 10 1.295792 CCCATAACAACGCGCATACT 58.704 50.000 5.73 0.00 0.00 2.12
10 11 0.316689 GCCCATAACAACGCGCATAC 60.317 55.000 5.73 0.00 0.00 2.39
11 12 0.744771 TGCCCATAACAACGCGCATA 60.745 50.000 5.73 0.00 0.00 3.14
12 13 1.590610 TTGCCCATAACAACGCGCAT 61.591 50.000 5.73 0.00 0.00 4.73
13 14 1.590610 ATTGCCCATAACAACGCGCA 61.591 50.000 5.73 0.00 0.00 6.09
14 15 0.457681 AATTGCCCATAACAACGCGC 60.458 50.000 5.73 0.00 0.00 6.86
15 16 1.653114 CAAATTGCCCATAACAACGCG 59.347 47.619 3.53 3.53 0.00 6.01
16 17 1.999024 CCAAATTGCCCATAACAACGC 59.001 47.619 0.00 0.00 0.00 4.84
17 18 3.584406 TCCAAATTGCCCATAACAACG 57.416 42.857 0.00 0.00 0.00 4.10
18 19 5.391843 GCAATTCCAAATTGCCCATAACAAC 60.392 40.000 21.19 0.00 46.21 3.32
19 20 4.699257 GCAATTCCAAATTGCCCATAACAA 59.301 37.500 21.19 0.00 46.21 2.83
20 21 4.260170 GCAATTCCAAATTGCCCATAACA 58.740 39.130 21.19 0.00 46.21 2.41
21 22 4.880886 GCAATTCCAAATTGCCCATAAC 57.119 40.909 21.19 0.00 46.21 1.89
29 30 7.753132 CCAAATCATTTCTGCAATTCCAAATTG 59.247 33.333 7.82 7.82 0.00 2.32
30 31 7.576098 GCCAAATCATTTCTGCAATTCCAAATT 60.576 33.333 0.00 0.00 0.00 1.82
31 32 6.127842 GCCAAATCATTTCTGCAATTCCAAAT 60.128 34.615 0.00 0.00 0.00 2.32
32 33 5.181622 GCCAAATCATTTCTGCAATTCCAAA 59.818 36.000 0.00 0.00 0.00 3.28
33 34 4.696402 GCCAAATCATTTCTGCAATTCCAA 59.304 37.500 0.00 0.00 0.00 3.53
34 35 4.020039 AGCCAAATCATTTCTGCAATTCCA 60.020 37.500 4.42 0.00 0.00 3.53
35 36 4.510571 AGCCAAATCATTTCTGCAATTCC 58.489 39.130 4.42 0.00 0.00 3.01
36 37 6.490566 AAAGCCAAATCATTTCTGCAATTC 57.509 33.333 4.42 0.00 0.00 2.17
37 38 6.887626 AAAAGCCAAATCATTTCTGCAATT 57.112 29.167 4.42 0.00 0.00 2.32
38 39 7.444792 TGTTAAAAGCCAAATCATTTCTGCAAT 59.555 29.630 4.42 0.00 0.00 3.56
39 40 6.765036 TGTTAAAAGCCAAATCATTTCTGCAA 59.235 30.769 4.42 0.00 0.00 4.08
40 41 6.286758 TGTTAAAAGCCAAATCATTTCTGCA 58.713 32.000 4.42 0.00 0.00 4.41
41 42 6.646240 TCTGTTAAAAGCCAAATCATTTCTGC 59.354 34.615 0.00 0.00 0.00 4.26
42 43 8.490355 GTTCTGTTAAAAGCCAAATCATTTCTG 58.510 33.333 0.00 0.00 0.00 3.02
43 44 8.203485 TGTTCTGTTAAAAGCCAAATCATTTCT 58.797 29.630 0.00 0.00 0.00 2.52
44 45 8.364129 TGTTCTGTTAAAAGCCAAATCATTTC 57.636 30.769 0.00 0.00 0.00 2.17
45 46 8.611757 GTTGTTCTGTTAAAAGCCAAATCATTT 58.388 29.630 0.70 0.00 0.00 2.32
46 47 7.768120 TGTTGTTCTGTTAAAAGCCAAATCATT 59.232 29.630 0.70 0.00 0.00 2.57
47 48 7.271511 TGTTGTTCTGTTAAAAGCCAAATCAT 58.728 30.769 0.70 0.00 0.00 2.45
48 49 6.634805 TGTTGTTCTGTTAAAAGCCAAATCA 58.365 32.000 0.70 0.00 0.00 2.57
49 50 7.532682 TTGTTGTTCTGTTAAAAGCCAAATC 57.467 32.000 0.70 0.00 0.00 2.17
50 51 7.913674 TTTGTTGTTCTGTTAAAAGCCAAAT 57.086 28.000 0.70 0.00 0.00 2.32
51 52 7.913674 ATTTGTTGTTCTGTTAAAAGCCAAA 57.086 28.000 0.70 0.00 0.00 3.28
52 53 9.606631 AATATTTGTTGTTCTGTTAAAAGCCAA 57.393 25.926 0.00 0.00 0.00 4.52
53 54 9.255304 GAATATTTGTTGTTCTGTTAAAAGCCA 57.745 29.630 0.00 0.00 0.00 4.75
54 55 9.255304 TGAATATTTGTTGTTCTGTTAAAAGCC 57.745 29.630 0.00 0.00 0.00 4.35
82 83 2.297597 CCCGGAATAACACCTGCAAAAA 59.702 45.455 0.73 0.00 0.00 1.94
83 84 1.889829 CCCGGAATAACACCTGCAAAA 59.110 47.619 0.73 0.00 0.00 2.44
84 85 1.540267 CCCGGAATAACACCTGCAAA 58.460 50.000 0.73 0.00 0.00 3.68
85 86 0.963355 GCCCGGAATAACACCTGCAA 60.963 55.000 0.73 0.00 0.00 4.08
86 87 1.377987 GCCCGGAATAACACCTGCA 60.378 57.895 0.73 0.00 0.00 4.41
87 88 0.179468 TAGCCCGGAATAACACCTGC 59.821 55.000 0.73 0.00 0.00 4.85
88 89 1.208535 TGTAGCCCGGAATAACACCTG 59.791 52.381 0.73 0.00 0.00 4.00
89 90 1.485066 CTGTAGCCCGGAATAACACCT 59.515 52.381 0.73 0.00 0.00 4.00
90 91 1.949465 CTGTAGCCCGGAATAACACC 58.051 55.000 0.73 0.00 0.00 4.16
91 92 1.296727 GCTGTAGCCCGGAATAACAC 58.703 55.000 0.73 0.00 34.31 3.32
92 93 0.906066 TGCTGTAGCCCGGAATAACA 59.094 50.000 0.73 0.35 41.18 2.41
93 94 1.134491 AGTGCTGTAGCCCGGAATAAC 60.134 52.381 0.73 0.00 41.18 1.89
94 95 1.134521 CAGTGCTGTAGCCCGGAATAA 60.135 52.381 0.73 0.00 41.18 1.40
95 96 0.464036 CAGTGCTGTAGCCCGGAATA 59.536 55.000 0.73 0.00 41.18 1.75
96 97 1.221840 CAGTGCTGTAGCCCGGAAT 59.778 57.895 0.73 0.00 41.18 3.01
97 98 1.264749 ATCAGTGCTGTAGCCCGGAA 61.265 55.000 0.73 0.00 41.18 4.30
98 99 1.676678 GATCAGTGCTGTAGCCCGGA 61.677 60.000 0.73 0.00 41.18 5.14
99 100 1.227380 GATCAGTGCTGTAGCCCGG 60.227 63.158 0.00 0.00 41.18 5.73
100 101 1.227380 GGATCAGTGCTGTAGCCCG 60.227 63.158 0.80 0.00 41.18 6.13
101 102 1.227380 CGGATCAGTGCTGTAGCCC 60.227 63.158 0.80 0.00 41.18 5.19
102 103 0.744874 TACGGATCAGTGCTGTAGCC 59.255 55.000 8.91 0.00 41.18 3.93
103 104 2.223829 ACATACGGATCAGTGCTGTAGC 60.224 50.000 8.91 0.00 42.50 3.58
104 105 3.375642 CACATACGGATCAGTGCTGTAG 58.624 50.000 8.91 4.41 0.00 2.74
105 106 2.100749 CCACATACGGATCAGTGCTGTA 59.899 50.000 8.91 0.00 0.00 2.74
106 107 1.134699 CCACATACGGATCAGTGCTGT 60.135 52.381 8.91 9.10 0.00 4.40
107 108 1.134699 ACCACATACGGATCAGTGCTG 60.135 52.381 8.91 8.50 0.00 4.41
108 109 1.137086 GACCACATACGGATCAGTGCT 59.863 52.381 8.91 0.00 0.00 4.40
109 110 1.571919 GACCACATACGGATCAGTGC 58.428 55.000 8.91 0.00 0.00 4.40
110 111 1.757118 AGGACCACATACGGATCAGTG 59.243 52.381 8.91 2.14 0.00 3.66
111 112 2.160721 AGGACCACATACGGATCAGT 57.839 50.000 3.43 3.43 0.00 3.41
112 113 3.637229 AGTAAGGACCACATACGGATCAG 59.363 47.826 0.00 0.00 0.00 2.90
113 114 3.635373 GAGTAAGGACCACATACGGATCA 59.365 47.826 0.00 0.00 0.00 2.92
114 115 3.635373 TGAGTAAGGACCACATACGGATC 59.365 47.826 0.00 0.00 0.00 3.36
115 116 3.383825 GTGAGTAAGGACCACATACGGAT 59.616 47.826 0.00 0.00 31.06 4.18
116 117 2.756760 GTGAGTAAGGACCACATACGGA 59.243 50.000 0.00 0.00 31.06 4.69
117 118 2.758979 AGTGAGTAAGGACCACATACGG 59.241 50.000 0.00 0.00 32.33 4.02
118 119 3.181489 GGAGTGAGTAAGGACCACATACG 60.181 52.174 0.00 0.00 32.33 3.06
119 120 3.181489 CGGAGTGAGTAAGGACCACATAC 60.181 52.174 0.00 0.00 32.33 2.39
120 121 3.021695 CGGAGTGAGTAAGGACCACATA 58.978 50.000 0.00 0.00 32.33 2.29
121 122 1.825474 CGGAGTGAGTAAGGACCACAT 59.175 52.381 0.00 0.00 32.33 3.21
122 123 1.202964 TCGGAGTGAGTAAGGACCACA 60.203 52.381 0.00 0.00 32.33 4.17
123 124 1.201880 GTCGGAGTGAGTAAGGACCAC 59.798 57.143 0.00 0.00 0.00 4.16
124 125 1.542492 GTCGGAGTGAGTAAGGACCA 58.458 55.000 0.00 0.00 0.00 4.02
125 126 0.450983 CGTCGGAGTGAGTAAGGACC 59.549 60.000 0.00 0.00 0.00 4.46
126 127 0.450983 CCGTCGGAGTGAGTAAGGAC 59.549 60.000 4.91 0.00 0.00 3.85
127 128 0.325933 TCCGTCGGAGTGAGTAAGGA 59.674 55.000 10.71 0.00 0.00 3.36
128 129 0.733729 CTCCGTCGGAGTGAGTAAGG 59.266 60.000 29.66 5.10 44.25 2.69
138 139 3.997400 CTCTCTGGCCTCCGTCGGA 62.997 68.421 14.54 14.54 0.00 4.55
139 140 3.522731 CTCTCTGGCCTCCGTCGG 61.523 72.222 4.39 4.39 0.00 4.79
140 141 4.200283 GCTCTCTGGCCTCCGTCG 62.200 72.222 3.32 0.00 0.00 5.12
141 142 4.200283 CGCTCTCTGGCCTCCGTC 62.200 72.222 3.32 0.00 0.00 4.79
143 144 3.302347 AAACGCTCTCTGGCCTCCG 62.302 63.158 3.32 0.00 0.00 4.63
144 145 1.743252 CAAACGCTCTCTGGCCTCC 60.743 63.158 3.32 0.00 0.00 4.30
145 146 1.743252 CCAAACGCTCTCTGGCCTC 60.743 63.158 3.32 0.00 0.00 4.70
146 147 2.056906 AACCAAACGCTCTCTGGCCT 62.057 55.000 3.32 0.00 33.19 5.19
147 148 0.321298 TAACCAAACGCTCTCTGGCC 60.321 55.000 0.00 0.00 33.19 5.36
148 149 0.796927 GTAACCAAACGCTCTCTGGC 59.203 55.000 0.00 0.00 33.19 4.85
149 150 2.069273 CAGTAACCAAACGCTCTCTGG 58.931 52.381 0.00 0.00 36.24 3.86
150 151 2.069273 CCAGTAACCAAACGCTCTCTG 58.931 52.381 0.00 0.00 0.00 3.35
151 152 1.968493 TCCAGTAACCAAACGCTCTCT 59.032 47.619 0.00 0.00 0.00 3.10
152 153 2.450609 TCCAGTAACCAAACGCTCTC 57.549 50.000 0.00 0.00 0.00 3.20
153 154 2.567615 AGATCCAGTAACCAAACGCTCT 59.432 45.455 0.00 0.00 0.00 4.09
154 155 2.673368 CAGATCCAGTAACCAAACGCTC 59.327 50.000 0.00 0.00 0.00 5.03
155 156 2.038557 ACAGATCCAGTAACCAAACGCT 59.961 45.455 0.00 0.00 0.00 5.07
156 157 2.415512 GACAGATCCAGTAACCAAACGC 59.584 50.000 0.00 0.00 0.00 4.84
157 158 3.000727 GGACAGATCCAGTAACCAAACG 58.999 50.000 0.00 0.00 45.47 3.60
158 159 3.000727 CGGACAGATCCAGTAACCAAAC 58.999 50.000 0.00 0.00 46.67 2.93
159 160 2.027561 CCGGACAGATCCAGTAACCAAA 60.028 50.000 0.00 0.00 46.67 3.28
160 161 1.553248 CCGGACAGATCCAGTAACCAA 59.447 52.381 0.00 0.00 46.67 3.67
161 162 1.191535 CCGGACAGATCCAGTAACCA 58.808 55.000 0.00 0.00 46.67 3.67
162 163 1.134788 CACCGGACAGATCCAGTAACC 60.135 57.143 9.46 0.00 46.67 2.85
163 164 1.134788 CCACCGGACAGATCCAGTAAC 60.135 57.143 9.46 0.00 46.67 2.50
164 165 1.191535 CCACCGGACAGATCCAGTAA 58.808 55.000 9.46 0.00 46.67 2.24
165 166 0.333652 TCCACCGGACAGATCCAGTA 59.666 55.000 9.46 0.00 46.67 2.74
166 167 0.544357 TTCCACCGGACAGATCCAGT 60.544 55.000 9.46 0.00 46.67 4.00
167 168 0.176680 CTTCCACCGGACAGATCCAG 59.823 60.000 9.46 0.00 46.67 3.86
168 169 0.252057 TCTTCCACCGGACAGATCCA 60.252 55.000 9.46 0.00 46.67 3.41
169 170 0.175989 GTCTTCCACCGGACAGATCC 59.824 60.000 9.46 0.00 42.28 3.36
170 171 0.179134 CGTCTTCCACCGGACAGATC 60.179 60.000 9.46 0.00 33.19 2.75
171 172 1.890894 CGTCTTCCACCGGACAGAT 59.109 57.895 9.46 0.00 33.19 2.90
172 173 3.362262 CGTCTTCCACCGGACAGA 58.638 61.111 9.46 0.00 33.19 3.41
178 179 2.202570 CGCTACCGTCTTCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
179 180 2.508663 GCGCTACCGTCTTCCACC 60.509 66.667 0.00 0.00 36.67 4.61
180 181 2.879462 CGCGCTACCGTCTTCCAC 60.879 66.667 5.56 0.00 36.67 4.02
181 182 4.124351 CCGCGCTACCGTCTTCCA 62.124 66.667 5.56 0.00 36.67 3.53
182 183 2.624437 ATTCCGCGCTACCGTCTTCC 62.624 60.000 5.56 0.00 36.67 3.46
183 184 0.029834 TATTCCGCGCTACCGTCTTC 59.970 55.000 5.56 0.00 36.67 2.87
184 185 0.672342 ATATTCCGCGCTACCGTCTT 59.328 50.000 5.56 0.00 36.67 3.01
185 186 0.240411 GATATTCCGCGCTACCGTCT 59.760 55.000 5.56 0.00 36.67 4.18
186 187 0.240411 AGATATTCCGCGCTACCGTC 59.760 55.000 5.56 0.00 36.67 4.79
187 188 0.672342 AAGATATTCCGCGCTACCGT 59.328 50.000 5.56 0.00 36.67 4.83
188 189 1.335597 TGAAGATATTCCGCGCTACCG 60.336 52.381 5.56 0.00 37.57 4.02
189 190 2.433868 TGAAGATATTCCGCGCTACC 57.566 50.000 5.56 0.00 0.00 3.18
190 191 2.475487 GGTTGAAGATATTCCGCGCTAC 59.525 50.000 5.56 0.00 0.00 3.58
191 192 2.750948 GGTTGAAGATATTCCGCGCTA 58.249 47.619 5.56 0.00 0.00 4.26
192 193 1.583054 GGTTGAAGATATTCCGCGCT 58.417 50.000 5.56 0.00 0.00 5.92
193 194 0.232303 CGGTTGAAGATATTCCGCGC 59.768 55.000 0.00 0.00 35.01 6.86
194 195 0.859232 CCGGTTGAAGATATTCCGCG 59.141 55.000 0.00 0.00 39.87 6.46
195 196 1.949465 ACCGGTTGAAGATATTCCGC 58.051 50.000 0.00 0.00 39.87 5.54
196 197 3.064820 CCAAACCGGTTGAAGATATTCCG 59.935 47.826 23.08 0.00 39.87 4.30
197 198 4.266714 TCCAAACCGGTTGAAGATATTCC 58.733 43.478 23.08 0.00 39.87 3.01
198 199 5.221048 CCATCCAAACCGGTTGAAGATATTC 60.221 44.000 23.08 0.00 39.87 1.75
199 200 4.644685 CCATCCAAACCGGTTGAAGATATT 59.355 41.667 23.08 0.00 39.87 1.28
200 201 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
201 202 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
202 203 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
203 204 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
204 205 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
205 206 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
206 207 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
207 208 1.312371 ATCGCCATCCAAACCGGTTG 61.312 55.000 23.08 14.70 36.94 3.77
208 209 1.001393 ATCGCCATCCAAACCGGTT 60.001 52.632 15.86 15.86 35.57 4.44
209 210 1.451387 GATCGCCATCCAAACCGGT 60.451 57.895 0.00 0.00 35.57 5.28
210 211 0.819259 ATGATCGCCATCCAAACCGG 60.819 55.000 0.00 0.00 0.00 5.28
211 212 0.308684 CATGATCGCCATCCAAACCG 59.691 55.000 0.00 0.00 31.94 4.44
212 213 1.392589 ACATGATCGCCATCCAAACC 58.607 50.000 0.00 0.00 31.94 3.27
213 214 4.836125 ATTACATGATCGCCATCCAAAC 57.164 40.909 0.00 0.00 31.94 2.93
214 215 5.003160 CCTATTACATGATCGCCATCCAAA 58.997 41.667 0.00 0.00 31.94 3.28
215 216 4.285775 TCCTATTACATGATCGCCATCCAA 59.714 41.667 0.00 0.00 31.94 3.53
216 217 3.837731 TCCTATTACATGATCGCCATCCA 59.162 43.478 0.00 0.00 31.94 3.41
217 218 4.471904 TCCTATTACATGATCGCCATCC 57.528 45.455 0.00 0.00 31.94 3.51
218 219 6.920758 GTCTATCCTATTACATGATCGCCATC 59.079 42.308 0.00 0.00 31.94 3.51
219 220 6.381133 TGTCTATCCTATTACATGATCGCCAT 59.619 38.462 0.00 0.00 35.44 4.40
220 221 5.714806 TGTCTATCCTATTACATGATCGCCA 59.285 40.000 0.00 0.00 0.00 5.69
221 222 6.208988 TGTCTATCCTATTACATGATCGCC 57.791 41.667 0.00 0.00 0.00 5.54
222 223 8.709386 AAATGTCTATCCTATTACATGATCGC 57.291 34.615 0.00 0.00 33.04 4.58
245 246 8.736244 GGCACAATGAAAGATAGGTAAACTAAA 58.264 33.333 0.00 0.00 34.79 1.85
246 247 7.885922 TGGCACAATGAAAGATAGGTAAACTAA 59.114 33.333 0.00 0.00 31.80 2.24
247 248 7.398829 TGGCACAATGAAAGATAGGTAAACTA 58.601 34.615 0.00 0.00 31.92 2.24
248 249 6.245408 TGGCACAATGAAAGATAGGTAAACT 58.755 36.000 0.00 0.00 31.92 2.66
249 250 6.509418 TGGCACAATGAAAGATAGGTAAAC 57.491 37.500 0.00 0.00 31.92 2.01
250 251 5.125417 GCTGGCACAATGAAAGATAGGTAAA 59.875 40.000 0.00 0.00 38.70 2.01
251 252 4.640201 GCTGGCACAATGAAAGATAGGTAA 59.360 41.667 0.00 0.00 38.70 2.85
252 253 4.199310 GCTGGCACAATGAAAGATAGGTA 58.801 43.478 0.00 0.00 38.70 3.08
253 254 3.019564 GCTGGCACAATGAAAGATAGGT 58.980 45.455 0.00 0.00 38.70 3.08
254 255 2.360165 GGCTGGCACAATGAAAGATAGG 59.640 50.000 0.00 0.00 38.70 2.57
255 256 2.032550 CGGCTGGCACAATGAAAGATAG 59.967 50.000 1.08 0.00 38.70 2.08
256 257 2.016318 CGGCTGGCACAATGAAAGATA 58.984 47.619 1.08 0.00 38.70 1.98
257 258 0.813184 CGGCTGGCACAATGAAAGAT 59.187 50.000 1.08 0.00 38.70 2.40
258 259 1.243342 CCGGCTGGCACAATGAAAGA 61.243 55.000 0.00 0.00 38.70 2.52
259 260 1.213537 CCGGCTGGCACAATGAAAG 59.786 57.895 0.00 0.00 38.70 2.62
260 261 1.112315 AACCGGCTGGCACAATGAAA 61.112 50.000 12.89 0.00 38.70 2.69
261 262 1.530419 AACCGGCTGGCACAATGAA 60.530 52.632 12.89 0.00 38.70 2.57
262 263 2.115052 AACCGGCTGGCACAATGA 59.885 55.556 12.89 0.00 38.70 2.57
263 264 2.259204 CAACCGGCTGGCACAATG 59.741 61.111 12.89 0.00 38.70 2.82
264 265 2.203480 ACAACCGGCTGGCACAAT 60.203 55.556 12.89 0.00 38.70 2.71
265 266 3.215568 CACAACCGGCTGGCACAA 61.216 61.111 12.89 0.00 38.70 3.33
274 275 1.681486 AACCCAAAAGCCACAACCGG 61.681 55.000 0.00 0.00 0.00 5.28
275 276 0.176910 AAACCCAAAAGCCACAACCG 59.823 50.000 0.00 0.00 0.00 4.44
276 277 2.013400 CAAAACCCAAAAGCCACAACC 58.987 47.619 0.00 0.00 0.00 3.77
277 278 2.705730 ACAAAACCCAAAAGCCACAAC 58.294 42.857 0.00 0.00 0.00 3.32
278 279 3.425162 AACAAAACCCAAAAGCCACAA 57.575 38.095 0.00 0.00 0.00 3.33
279 280 3.425162 AAACAAAACCCAAAAGCCACA 57.575 38.095 0.00 0.00 0.00 4.17
280 281 4.695928 TGTAAAACAAAACCCAAAAGCCAC 59.304 37.500 0.00 0.00 0.00 5.01
281 282 4.906618 TGTAAAACAAAACCCAAAAGCCA 58.093 34.783 0.00 0.00 0.00 4.75
282 283 4.201871 GCTGTAAAACAAAACCCAAAAGCC 60.202 41.667 0.00 0.00 0.00 4.35
283 284 4.634004 AGCTGTAAAACAAAACCCAAAAGC 59.366 37.500 0.00 0.00 0.00 3.51
284 285 5.872070 TCAGCTGTAAAACAAAACCCAAAAG 59.128 36.000 14.67 0.00 0.00 2.27
285 286 5.639931 GTCAGCTGTAAAACAAAACCCAAAA 59.360 36.000 14.67 0.00 0.00 2.44
286 287 5.172205 GTCAGCTGTAAAACAAAACCCAAA 58.828 37.500 14.67 0.00 0.00 3.28
287 288 4.675671 CGTCAGCTGTAAAACAAAACCCAA 60.676 41.667 14.67 0.00 0.00 4.12
288 289 3.181495 CGTCAGCTGTAAAACAAAACCCA 60.181 43.478 14.67 0.00 0.00 4.51
289 290 3.368495 CGTCAGCTGTAAAACAAAACCC 58.632 45.455 14.67 0.00 0.00 4.11
290 291 2.787129 GCGTCAGCTGTAAAACAAAACC 59.213 45.455 14.67 0.00 41.01 3.27
311 312 2.481104 GCAACAGCTAGCTCACCTAGAG 60.481 54.545 16.15 3.33 45.30 2.43
312 313 1.478510 GCAACAGCTAGCTCACCTAGA 59.521 52.381 16.15 0.00 45.30 2.43
313 314 1.480137 AGCAACAGCTAGCTCACCTAG 59.520 52.381 16.15 4.98 45.26 3.02
314 315 1.561643 AGCAACAGCTAGCTCACCTA 58.438 50.000 16.15 0.00 36.00 3.08
315 316 0.689623 AAGCAACAGCTAGCTCACCT 59.310 50.000 16.15 6.09 40.90 4.00
316 317 1.528129 AAAGCAACAGCTAGCTCACC 58.472 50.000 16.15 3.65 40.90 4.02
317 318 2.291741 ACAAAAGCAACAGCTAGCTCAC 59.708 45.455 16.15 4.43 40.90 3.51
318 319 2.575532 ACAAAAGCAACAGCTAGCTCA 58.424 42.857 16.15 0.00 40.90 4.26
319 320 3.632855 AACAAAAGCAACAGCTAGCTC 57.367 42.857 16.15 3.28 40.90 4.09
320 321 3.381272 TCAAACAAAAGCAACAGCTAGCT 59.619 39.130 12.68 12.68 44.31 3.32
321 322 3.705604 TCAAACAAAAGCAACAGCTAGC 58.294 40.909 6.62 6.62 37.72 3.42
322 323 5.456822 GTCTTCAAACAAAAGCAACAGCTAG 59.543 40.000 0.00 0.00 37.72 3.42
323 324 5.339990 GTCTTCAAACAAAAGCAACAGCTA 58.660 37.500 0.00 0.00 37.72 3.32
324 325 4.176271 GTCTTCAAACAAAAGCAACAGCT 58.824 39.130 0.00 0.00 41.23 4.24
325 326 3.000773 CGTCTTCAAACAAAAGCAACAGC 60.001 43.478 0.00 0.00 0.00 4.40
326 327 4.165779 ACGTCTTCAAACAAAAGCAACAG 58.834 39.130 0.00 0.00 0.00 3.16
327 328 4.167554 ACGTCTTCAAACAAAAGCAACA 57.832 36.364 0.00 0.00 0.00 3.33
328 329 6.525280 TCTTAACGTCTTCAAACAAAAGCAAC 59.475 34.615 0.00 0.00 0.00 4.17
329 330 6.525280 GTCTTAACGTCTTCAAACAAAAGCAA 59.475 34.615 0.00 0.00 0.00 3.91
330 331 6.025280 GTCTTAACGTCTTCAAACAAAAGCA 58.975 36.000 0.00 0.00 0.00 3.91
331 332 5.454554 GGTCTTAACGTCTTCAAACAAAAGC 59.545 40.000 0.00 0.00 0.00 3.51
332 333 6.782150 AGGTCTTAACGTCTTCAAACAAAAG 58.218 36.000 0.00 0.00 0.00 2.27
333 334 6.746745 AGGTCTTAACGTCTTCAAACAAAA 57.253 33.333 0.00 0.00 0.00 2.44
334 335 6.149807 ACAAGGTCTTAACGTCTTCAAACAAA 59.850 34.615 0.00 0.00 0.00 2.83
335 336 5.644636 ACAAGGTCTTAACGTCTTCAAACAA 59.355 36.000 0.00 0.00 0.00 2.83
336 337 5.180271 ACAAGGTCTTAACGTCTTCAAACA 58.820 37.500 0.00 0.00 0.00 2.83
337 338 5.729974 ACAAGGTCTTAACGTCTTCAAAC 57.270 39.130 0.00 0.00 0.00 2.93
338 339 5.875910 TCAACAAGGTCTTAACGTCTTCAAA 59.124 36.000 0.00 0.00 0.00 2.69
339 340 5.421277 TCAACAAGGTCTTAACGTCTTCAA 58.579 37.500 0.00 0.00 0.00 2.69
340 341 5.013568 TCAACAAGGTCTTAACGTCTTCA 57.986 39.130 0.00 0.00 0.00 3.02
341 342 5.175308 GTCTCAACAAGGTCTTAACGTCTTC 59.825 44.000 0.00 0.00 0.00 2.87
342 343 5.048507 GTCTCAACAAGGTCTTAACGTCTT 58.951 41.667 0.00 0.00 0.00 3.01
343 344 4.501058 GGTCTCAACAAGGTCTTAACGTCT 60.501 45.833 0.00 0.00 0.00 4.18
344 345 3.739810 GGTCTCAACAAGGTCTTAACGTC 59.260 47.826 0.00 0.00 0.00 4.34
345 346 3.387050 AGGTCTCAACAAGGTCTTAACGT 59.613 43.478 0.00 0.00 0.00 3.99
346 347 3.991367 AGGTCTCAACAAGGTCTTAACG 58.009 45.455 0.00 0.00 0.00 3.18
347 348 7.981102 AAATAGGTCTCAACAAGGTCTTAAC 57.019 36.000 0.00 0.00 0.00 2.01
348 349 8.877195 AGTAAATAGGTCTCAACAAGGTCTTAA 58.123 33.333 0.00 0.00 0.00 1.85
349 350 8.431910 AGTAAATAGGTCTCAACAAGGTCTTA 57.568 34.615 0.00 0.00 0.00 2.10
350 351 7.317722 AGTAAATAGGTCTCAACAAGGTCTT 57.682 36.000 0.00 0.00 0.00 3.01
351 352 6.936968 AGTAAATAGGTCTCAACAAGGTCT 57.063 37.500 0.00 0.00 0.00 3.85
352 353 7.981102 AAAGTAAATAGGTCTCAACAAGGTC 57.019 36.000 0.00 0.00 0.00 3.85
353 354 8.762481 AAAAAGTAAATAGGTCTCAACAAGGT 57.238 30.769 0.00 0.00 0.00 3.50
373 374 7.216920 GCATACGGCCACTTTTATTAAAAAG 57.783 36.000 2.24 8.64 45.46 2.27
374 375 6.688578 TGCATACGGCCACTTTTATTAAAAA 58.311 32.000 2.24 0.00 43.89 1.94
375 376 6.268825 TGCATACGGCCACTTTTATTAAAA 57.731 33.333 2.24 1.85 43.89 1.52
376 377 5.899120 TGCATACGGCCACTTTTATTAAA 57.101 34.783 2.24 0.00 43.89 1.52
377 378 6.095580 TCAATGCATACGGCCACTTTTATTAA 59.904 34.615 2.24 0.00 43.89 1.40
378 379 5.590663 TCAATGCATACGGCCACTTTTATTA 59.409 36.000 2.24 0.00 43.89 0.98
379 380 4.400884 TCAATGCATACGGCCACTTTTATT 59.599 37.500 2.24 0.00 43.89 1.40
380 381 3.951037 TCAATGCATACGGCCACTTTTAT 59.049 39.130 2.24 0.00 43.89 1.40
381 382 3.348119 TCAATGCATACGGCCACTTTTA 58.652 40.909 2.24 0.00 43.89 1.52
382 383 2.166829 TCAATGCATACGGCCACTTTT 58.833 42.857 2.24 0.00 43.89 2.27
383 384 1.832883 TCAATGCATACGGCCACTTT 58.167 45.000 2.24 0.00 43.89 2.66
384 385 1.949525 GATCAATGCATACGGCCACTT 59.050 47.619 2.24 0.00 43.89 3.16
385 386 1.141657 AGATCAATGCATACGGCCACT 59.858 47.619 2.24 0.00 43.89 4.00
386 387 1.265095 CAGATCAATGCATACGGCCAC 59.735 52.381 2.24 0.00 43.89 5.01
387 388 1.140652 TCAGATCAATGCATACGGCCA 59.859 47.619 2.24 0.00 43.89 5.36
388 389 1.882912 TCAGATCAATGCATACGGCC 58.117 50.000 0.00 0.00 43.89 6.13
389 390 2.413765 GCATCAGATCAATGCATACGGC 60.414 50.000 21.61 0.00 46.93 5.68
390 391 3.466712 GCATCAGATCAATGCATACGG 57.533 47.619 21.61 0.00 46.93 4.02
397 398 3.805207 TGACCTCTGCATCAGATCAATG 58.195 45.455 0.00 0.00 39.92 2.82
398 399 3.181453 CCTGACCTCTGCATCAGATCAAT 60.181 47.826 15.14 0.00 44.32 2.57
399 400 2.169978 CCTGACCTCTGCATCAGATCAA 59.830 50.000 15.14 0.00 44.32 2.57
400 401 1.761198 CCTGACCTCTGCATCAGATCA 59.239 52.381 15.14 3.48 44.32 2.92
401 402 1.070445 CCCTGACCTCTGCATCAGATC 59.930 57.143 15.14 0.00 44.32 2.75
402 403 1.129917 CCCTGACCTCTGCATCAGAT 58.870 55.000 15.14 0.00 44.32 2.90
403 404 0.041684 TCCCTGACCTCTGCATCAGA 59.958 55.000 15.14 0.00 44.32 3.27
404 405 0.464870 CTCCCTGACCTCTGCATCAG 59.535 60.000 7.89 7.89 41.75 2.90
405 406 0.252421 ACTCCCTGACCTCTGCATCA 60.252 55.000 0.00 0.00 0.00 3.07
406 407 0.463620 GACTCCCTGACCTCTGCATC 59.536 60.000 0.00 0.00 0.00 3.91
407 408 0.980231 GGACTCCCTGACCTCTGCAT 60.980 60.000 0.00 0.00 0.00 3.96
408 409 1.610673 GGACTCCCTGACCTCTGCA 60.611 63.158 0.00 0.00 0.00 4.41
409 410 2.363172 GGGACTCCCTGACCTCTGC 61.363 68.421 6.90 0.00 41.34 4.26
410 411 4.042251 GGGACTCCCTGACCTCTG 57.958 66.667 6.90 0.00 41.34 3.35
420 421 2.281539 TTTTCGAAAAGGGGGACTCC 57.718 50.000 19.08 0.00 0.00 3.85
439 440 3.383185 TCGGCATCCTTTGTCTTGTTTTT 59.617 39.130 0.00 0.00 0.00 1.94
440 441 2.955660 TCGGCATCCTTTGTCTTGTTTT 59.044 40.909 0.00 0.00 0.00 2.43
441 442 2.582052 TCGGCATCCTTTGTCTTGTTT 58.418 42.857 0.00 0.00 0.00 2.83
442 443 2.270352 TCGGCATCCTTTGTCTTGTT 57.730 45.000 0.00 0.00 0.00 2.83
445 446 2.290260 TGTCATCGGCATCCTTTGTCTT 60.290 45.455 0.00 0.00 0.00 3.01
472 473 1.688735 TGGATGATACGGCCTCTTCTG 59.311 52.381 0.00 0.00 0.00 3.02
842 1029 1.884075 CGGACCCGGACTCATGACAA 61.884 60.000 0.73 0.00 35.56 3.18
843 1030 2.348104 CGGACCCGGACTCATGACA 61.348 63.158 0.73 0.00 35.56 3.58
873 1060 0.469144 TTGGTTCACCTTTGCCCCTC 60.469 55.000 0.00 0.00 36.82 4.30
985 1178 2.697761 CCATGCTCTGTGCCTGTGC 61.698 63.158 6.31 0.00 42.00 4.57
986 1179 2.697761 GCCATGCTCTGTGCCTGTG 61.698 63.158 6.31 0.70 42.00 3.66
987 1180 2.360852 GCCATGCTCTGTGCCTGT 60.361 61.111 6.31 0.00 42.00 4.00
988 1181 1.320344 ATTGCCATGCTCTGTGCCTG 61.320 55.000 0.00 0.00 42.00 4.85
989 1182 1.000019 ATTGCCATGCTCTGTGCCT 60.000 52.632 0.00 0.00 42.00 4.75
1374 1716 2.411765 CTGGTTTTCCGAGGGCCTGT 62.412 60.000 12.95 0.00 44.36 4.00
1689 2244 0.605319 CAGCGTGGGGTTGTGTATGT 60.605 55.000 0.00 0.00 0.00 2.29
1871 2426 1.939785 GCTGCGGATGTCGACGTAG 60.940 63.158 10.95 8.55 44.00 3.51
2462 5090 8.902806 TCGGCATGATGTTAGAAATTTAGAATT 58.097 29.630 0.00 0.00 0.00 2.17
2675 5315 7.015098 ACACATTCCACATTATTTTTCACCTCA 59.985 33.333 0.00 0.00 0.00 3.86
2966 5608 2.615747 GGTTTGTAGCCTCCTTGACTCC 60.616 54.545 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.