Multiple sequence alignment - TraesCS3B01G145800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G145800 chr3B 100.000 8249 0 0 1 8249 135003880 134995632 0.000000e+00 15234.0
1 TraesCS3B01G145800 chr3B 98.412 8251 93 10 1 8249 134965846 134974060 0.000000e+00 14477.0
2 TraesCS3B01G145800 chr3B 88.544 1449 106 20 2326 3739 131055282 131056705 0.000000e+00 1701.0
3 TraesCS3B01G145800 chr3B 83.598 1134 126 31 1243 2324 131054125 131055250 0.000000e+00 1009.0
4 TraesCS3B01G145800 chr3B 83.967 973 102 30 6524 7457 131062865 131063822 0.000000e+00 883.0
5 TraesCS3B01G145800 chr3B 89.162 692 72 3 4272 4962 131060392 131061081 0.000000e+00 859.0
6 TraesCS3B01G145800 chr3B 83.593 835 72 29 5700 6525 131062006 131062784 0.000000e+00 723.0
7 TraesCS3B01G145800 chr3B 79.554 1076 152 37 2326 3362 135680451 135681497 0.000000e+00 706.0
8 TraesCS3B01G145800 chr3B 77.446 1104 172 45 2326 3394 135709384 135710445 9.220000e-164 588.0
9 TraesCS3B01G145800 chr3B 77.507 1107 166 51 2326 3394 135806325 135807386 9.220000e-164 588.0
10 TraesCS3B01G145800 chr3B 87.173 421 39 8 6524 6934 133812033 133811618 1.620000e-126 464.0
11 TraesCS3B01G145800 chr3B 81.551 477 57 21 6524 6979 133802779 133802313 1.690000e-96 364.0
12 TraesCS3B01G145800 chr3B 88.627 255 4 2 7458 7694 134978256 134978503 3.770000e-73 287.0
13 TraesCS3B01G145800 chr3B 87.843 255 6 2 7458 7694 134991435 134991188 8.160000e-70 276.0
14 TraesCS3B01G145800 chr3B 88.835 206 19 3 3840 4044 131059669 131059871 4.940000e-62 250.0
15 TraesCS3B01G145800 chr3B 86.547 223 29 1 2358 2580 133816551 133816330 2.300000e-60 244.0
16 TraesCS3B01G145800 chr3B 80.226 177 31 4 7163 7339 136079841 136080013 6.720000e-26 130.0
17 TraesCS3B01G145800 chr3B 81.757 148 18 7 7189 7329 133811148 133811003 1.880000e-21 115.0
18 TraesCS3B01G145800 chr3B 79.605 152 27 4 7188 7339 135687928 135688075 1.130000e-18 106.0
19 TraesCS3B01G145800 chr3B 82.105 95 15 2 1141 1235 133817924 133817832 6.860000e-11 80.5
20 TraesCS3B01G145800 chr3A 92.928 3337 146 41 2322 5595 102275778 102279087 0.000000e+00 4772.0
21 TraesCS3B01G145800 chr3A 94.334 1765 79 9 5699 7458 102279086 102280834 0.000000e+00 2686.0
22 TraesCS3B01G145800 chr3A 90.783 792 41 11 896 1659 102274635 102275422 0.000000e+00 1029.0
23 TraesCS3B01G145800 chr3A 87.469 806 63 17 1 799 102273863 102274637 0.000000e+00 894.0
24 TraesCS3B01G145800 chr3A 76.879 1397 219 62 2326 3654 102360132 102361492 0.000000e+00 695.0
25 TraesCS3B01G145800 chr3A 97.859 327 7 0 1998 2324 102275424 102275750 4.320000e-157 566.0
26 TraesCS3B01G145800 chr3A 87.348 411 36 9 6536 6934 101886870 101886464 2.710000e-124 457.0
27 TraesCS3B01G145800 chr3A 78.249 754 133 22 1865 2597 101891643 101890900 9.760000e-124 455.0
28 TraesCS3B01G145800 chr3A 75.043 1158 196 61 2531 3628 102474031 102475155 1.260000e-122 451.0
29 TraesCS3B01G145800 chr3A 74.806 1159 198 62 2531 3628 102524869 102525994 3.540000e-118 436.0
30 TraesCS3B01G145800 chr3A 76.392 521 104 18 1795 2301 102307894 102307379 6.350000e-66 263.0
31 TraesCS3B01G145800 chr3A 98.214 112 2 0 5592 5703 550641947 550641836 6.530000e-46 196.0
32 TraesCS3B01G145800 chr3A 81.000 100 18 1 1141 1239 101892268 101892169 2.470000e-10 78.7
33 TraesCS3B01G145800 chr3D 97.685 1296 25 4 2322 3616 85400054 85401345 0.000000e+00 2222.0
34 TraesCS3B01G145800 chr3D 92.204 1488 76 20 876 2324 85398543 85400029 0.000000e+00 2069.0
35 TraesCS3B01G145800 chr3D 90.261 1417 67 20 3726 5087 85401347 85402747 0.000000e+00 1786.0
36 TraesCS3B01G145800 chr3D 93.470 1072 43 12 5699 6762 85403363 85404415 0.000000e+00 1567.0
37 TraesCS3B01G145800 chr3D 95.331 514 20 2 5086 5595 85402851 85403364 0.000000e+00 813.0
38 TraesCS3B01G145800 chr3D 78.947 1064 155 38 2369 3394 85587851 85588883 0.000000e+00 660.0
39 TraesCS3B01G145800 chr3D 89.788 519 43 4 365 882 85398083 85398592 0.000000e+00 656.0
40 TraesCS3B01G145800 chr3D 78.444 900 124 36 2326 3182 85443720 85444592 2.640000e-144 523.0
41 TraesCS3B01G145800 chr3D 78.382 754 126 25 1873 2594 85238128 85238876 9.760000e-124 455.0
42 TraesCS3B01G145800 chr3D 86.861 411 42 7 6536 6936 84905612 84905204 4.540000e-122 449.0
43 TraesCS3B01G145800 chr3D 84.065 433 42 13 6524 6933 85888281 85888709 7.760000e-105 392.0
44 TraesCS3B01G145800 chr3D 83.221 447 46 17 6524 6946 85592210 85592651 4.670000e-102 383.0
45 TraesCS3B01G145800 chr3D 82.203 472 56 21 6524 6978 84896932 84896472 1.680000e-101 381.0
46 TraesCS3B01G145800 chr3D 78.416 505 79 20 2900 3395 85245997 85246480 1.350000e-77 302.0
47 TraesCS3B01G145800 chr3D 76.775 521 101 18 1795 2301 85411016 85410502 2.930000e-69 274.0
48 TraesCS3B01G145800 chr3D 80.791 177 30 4 7163 7339 85888952 85889124 1.440000e-27 135.0
49 TraesCS3B01G145800 chr3D 88.172 93 7 4 7187 7278 85250952 85251041 3.150000e-19 108.0
50 TraesCS3B01G145800 chr3D 79.605 152 27 4 7188 7339 85449993 85450140 1.130000e-18 106.0
51 TraesCS3B01G145800 chr7A 90.482 809 52 5 7458 8249 171869157 171869957 0.000000e+00 1044.0
52 TraesCS3B01G145800 chr7A 89.864 809 57 5 7458 8249 148824472 148823672 0.000000e+00 1016.0
53 TraesCS3B01G145800 chr7A 89.877 810 55 7 7458 8249 171754873 171755673 0.000000e+00 1016.0
54 TraesCS3B01G145800 chr7A 93.293 164 4 3 7458 7621 171873392 171873548 1.380000e-57 235.0
55 TraesCS3B01G145800 chrUn 90.235 809 54 5 7458 8249 247469353 247468553 0.000000e+00 1033.0
56 TraesCS3B01G145800 chrUn 90.235 809 54 5 7458 8249 405157339 405158139 0.000000e+00 1033.0
57 TraesCS3B01G145800 chr6B 89.864 809 57 10 7458 8249 462688681 462689481 0.000000e+00 1016.0
58 TraesCS3B01G145800 chr7D 89.987 789 50 9 7457 8227 631310673 631309896 0.000000e+00 992.0
59 TraesCS3B01G145800 chr1A 88.861 808 64 9 7458 8248 547435364 547436162 0.000000e+00 970.0
60 TraesCS3B01G145800 chr5A 80.667 300 33 17 6051 6341 658996271 658996554 8.390000e-50 209.0
61 TraesCS3B01G145800 chr5A 93.701 127 7 1 5588 5714 140818061 140817936 1.090000e-43 189.0
62 TraesCS3B01G145800 chr4A 94.574 129 7 0 5593 5721 440870369 440870497 5.050000e-47 200.0
63 TraesCS3B01G145800 chr4A 96.667 120 2 2 5594 5713 132996367 132996250 1.820000e-46 198.0
64 TraesCS3B01G145800 chr2A 95.868 121 3 2 5586 5706 187955928 187955810 2.350000e-45 195.0
65 TraesCS3B01G145800 chr2A 96.581 117 4 0 5591 5707 391874309 391874425 2.350000e-45 195.0
66 TraesCS3B01G145800 chr2A 95.798 119 5 0 5594 5712 96153218 96153100 8.450000e-45 193.0
67 TraesCS3B01G145800 chr2D 94.309 123 5 2 5579 5701 343104432 343104552 3.930000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G145800 chr3B 134995632 135003880 8248 True 15234.000000 15234 100.000000 1 8249 1 chr3B.!!$R3 8248
1 TraesCS3B01G145800 chr3B 134965846 134974060 8214 False 14477.000000 14477 98.412000 1 8249 1 chr3B.!!$F1 8248
2 TraesCS3B01G145800 chr3B 131054125 131063822 9697 False 904.166667 1701 86.283167 1243 7457 6 chr3B.!!$F8 6214
3 TraesCS3B01G145800 chr3B 135680451 135681497 1046 False 706.000000 706 79.554000 2326 3362 1 chr3B.!!$F3 1036
4 TraesCS3B01G145800 chr3B 135709384 135710445 1061 False 588.000000 588 77.446000 2326 3394 1 chr3B.!!$F5 1068
5 TraesCS3B01G145800 chr3B 135806325 135807386 1061 False 588.000000 588 77.507000 2326 3394 1 chr3B.!!$F6 1068
6 TraesCS3B01G145800 chr3B 133811003 133812033 1030 True 289.500000 464 84.465000 6524 7329 2 chr3B.!!$R4 805
7 TraesCS3B01G145800 chr3A 102273863 102280834 6971 False 1989.400000 4772 92.674600 1 7458 5 chr3A.!!$F4 7457
8 TraesCS3B01G145800 chr3A 102360132 102361492 1360 False 695.000000 695 76.879000 2326 3654 1 chr3A.!!$F1 1328
9 TraesCS3B01G145800 chr3A 102474031 102475155 1124 False 451.000000 451 75.043000 2531 3628 1 chr3A.!!$F2 1097
10 TraesCS3B01G145800 chr3A 102524869 102525994 1125 False 436.000000 436 74.806000 2531 3628 1 chr3A.!!$F3 1097
11 TraesCS3B01G145800 chr3A 101890900 101892268 1368 True 266.850000 455 79.624500 1141 2597 2 chr3A.!!$R4 1456
12 TraesCS3B01G145800 chr3A 102307379 102307894 515 True 263.000000 263 76.392000 1795 2301 1 chr3A.!!$R2 506
13 TraesCS3B01G145800 chr3D 85398083 85404415 6332 False 1518.833333 2222 93.123167 365 6762 6 chr3D.!!$F6 6397
14 TraesCS3B01G145800 chr3D 85443720 85444592 872 False 523.000000 523 78.444000 2326 3182 1 chr3D.!!$F4 856
15 TraesCS3B01G145800 chr3D 85587851 85592651 4800 False 521.500000 660 81.084000 2369 6946 2 chr3D.!!$F7 4577
16 TraesCS3B01G145800 chr3D 85238128 85238876 748 False 455.000000 455 78.382000 1873 2594 1 chr3D.!!$F1 721
17 TraesCS3B01G145800 chr3D 85410502 85411016 514 True 274.000000 274 76.775000 1795 2301 1 chr3D.!!$R3 506
18 TraesCS3B01G145800 chr3D 85888281 85889124 843 False 263.500000 392 82.428000 6524 7339 2 chr3D.!!$F8 815
19 TraesCS3B01G145800 chr7A 148823672 148824472 800 True 1016.000000 1016 89.864000 7458 8249 1 chr7A.!!$R1 791
20 TraesCS3B01G145800 chr7A 171754873 171755673 800 False 1016.000000 1016 89.877000 7458 8249 1 chr7A.!!$F1 791
21 TraesCS3B01G145800 chr7A 171869157 171873548 4391 False 639.500000 1044 91.887500 7458 8249 2 chr7A.!!$F2 791
22 TraesCS3B01G145800 chrUn 247468553 247469353 800 True 1033.000000 1033 90.235000 7458 8249 1 chrUn.!!$R1 791
23 TraesCS3B01G145800 chrUn 405157339 405158139 800 False 1033.000000 1033 90.235000 7458 8249 1 chrUn.!!$F1 791
24 TraesCS3B01G145800 chr6B 462688681 462689481 800 False 1016.000000 1016 89.864000 7458 8249 1 chr6B.!!$F1 791
25 TraesCS3B01G145800 chr7D 631309896 631310673 777 True 992.000000 992 89.987000 7457 8227 1 chr7D.!!$R1 770
26 TraesCS3B01G145800 chr1A 547435364 547436162 798 False 970.000000 970 88.861000 7458 8248 1 chr1A.!!$F1 790

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 830 0.693049 GGTTCATCCACTCCACACCT 59.307 55.000 0.00 0.00 35.97 4.00 F
1566 1664 0.252513 TCCCTCCTGAAATCCGGACA 60.253 55.000 6.12 0.00 0.00 4.02 F
2214 2374 3.746492 GTGATGTTCCCACTGTCAAGTAC 59.254 47.826 0.00 0.00 33.79 2.73 F
2992 3230 0.335019 TACTACTCCCCTGCTGAGCA 59.665 55.000 7.05 7.05 36.92 4.26 F
3681 4051 8.970691 ATTGTTGATTTCCTATTGAAGAAACG 57.029 30.769 0.00 0.00 34.97 3.60 F
4101 7443 1.191535 TGTAGCGGCAGTATGGAAGT 58.808 50.000 1.45 0.00 35.86 3.01 F
4102 7444 2.380941 TGTAGCGGCAGTATGGAAGTA 58.619 47.619 1.45 0.00 35.86 2.24 F
5080 8816 0.611200 ACATGTACCGGCTGTGCTAA 59.389 50.000 0.00 0.00 0.00 3.09 F
5607 9675 1.328430 CCACCTACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2374 2.995283 TCACCAGCATGATCAAGGAAG 58.005 47.619 0.00 0.00 39.69 3.46 R
2963 3201 1.437986 GGAGTAGTAGCACCGCTGG 59.562 63.158 0.00 0.00 40.10 4.85 R
4081 7423 1.553248 ACTTCCATACTGCCGCTACAA 59.447 47.619 0.00 0.00 0.00 2.41 R
4086 7428 1.797025 GGATACTTCCATACTGCCGC 58.203 55.000 0.00 0.00 42.12 6.53 R
5060 8796 0.108377 TAGCACAGCCGGTACATGTG 60.108 55.000 20.07 20.07 45.59 3.21 R
5061 8797 0.611200 TTAGCACAGCCGGTACATGT 59.389 50.000 1.90 2.69 0.00 3.21 R
5217 9278 2.106166 GGGGACATGAGCAGAGATCAAT 59.894 50.000 0.00 0.00 29.85 2.57 R
6745 11354 2.494059 GACACACTGGCAAAGCTAGAA 58.506 47.619 9.39 0.00 39.54 2.10 R
7494 12558 2.285977 CCCCTGGCTATTTAACACGAC 58.714 52.381 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 98 8.924511 TCTTCAATACTTGTTTGGAGATTCTT 57.075 30.769 0.00 0.00 34.49 2.52
96 99 9.354673 TCTTCAATACTTGTTTGGAGATTCTTT 57.645 29.630 0.00 0.00 34.49 2.52
233 237 2.346766 ACTGGTCAGCATGTCAAACA 57.653 45.000 0.00 0.00 37.40 2.83
422 427 2.288518 TGTTTCAAAATACAAGGGCCGC 60.289 45.455 0.00 0.00 0.00 6.53
824 830 0.693049 GGTTCATCCACTCCACACCT 59.307 55.000 0.00 0.00 35.97 4.00
918 926 1.153756 CCAGGCTGAAAACCCCAGT 59.846 57.895 17.94 0.00 34.29 4.00
1070 1092 2.621449 TACGTCCCCCTACCCCCT 60.621 66.667 0.00 0.00 0.00 4.79
1125 1150 1.744368 CGCTCTGTGGCTGCATTCT 60.744 57.895 0.50 0.00 0.00 2.40
1183 1208 3.531207 CGCTCTCCTCATGGCGGA 61.531 66.667 4.15 4.52 43.25 5.54
1460 1527 7.275697 TGTATTGCTTGTTTTATTGCATTCG 57.724 32.000 0.00 0.00 35.27 3.34
1566 1664 0.252513 TCCCTCCTGAAATCCGGACA 60.253 55.000 6.12 0.00 0.00 4.02
1837 1959 6.072397 TCGGTTTTCGATTTTGTTGATATGGT 60.072 34.615 0.00 0.00 43.74 3.55
2214 2374 3.746492 GTGATGTTCCCACTGTCAAGTAC 59.254 47.826 0.00 0.00 33.79 2.73
2963 3201 5.586243 TCTGCTTTCAGCCTAACATCATTAC 59.414 40.000 0.00 0.00 41.51 1.89
2992 3230 0.335019 TACTACTCCCCTGCTGAGCA 59.665 55.000 7.05 7.05 36.92 4.26
3681 4051 8.970691 ATTGTTGATTTCCTATTGAAGAAACG 57.029 30.769 0.00 0.00 34.97 3.60
4090 7432 3.717707 TGAGATATCAGTTTGTAGCGGC 58.282 45.455 5.32 0.00 0.00 6.53
4091 7433 3.132111 TGAGATATCAGTTTGTAGCGGCA 59.868 43.478 5.32 0.00 0.00 5.69
4092 7434 3.722147 AGATATCAGTTTGTAGCGGCAG 58.278 45.455 5.32 0.00 0.00 4.85
4093 7435 3.133003 AGATATCAGTTTGTAGCGGCAGT 59.867 43.478 5.32 0.00 0.00 4.40
4094 7436 4.341235 AGATATCAGTTTGTAGCGGCAGTA 59.659 41.667 5.32 0.00 0.00 2.74
4095 7437 3.543680 ATCAGTTTGTAGCGGCAGTAT 57.456 42.857 1.45 0.00 0.00 2.12
4096 7438 2.616960 TCAGTTTGTAGCGGCAGTATG 58.383 47.619 1.45 0.00 40.87 2.39
4097 7439 1.665679 CAGTTTGTAGCGGCAGTATGG 59.334 52.381 1.45 0.00 35.86 2.74
4098 7440 1.553248 AGTTTGTAGCGGCAGTATGGA 59.447 47.619 1.45 0.00 35.86 3.41
4099 7441 2.027561 AGTTTGTAGCGGCAGTATGGAA 60.028 45.455 1.45 0.00 35.86 3.53
4100 7442 2.309528 TTGTAGCGGCAGTATGGAAG 57.690 50.000 1.45 0.00 35.86 3.46
4101 7443 1.191535 TGTAGCGGCAGTATGGAAGT 58.808 50.000 1.45 0.00 35.86 3.01
4102 7444 2.380941 TGTAGCGGCAGTATGGAAGTA 58.619 47.619 1.45 0.00 35.86 2.24
4103 7445 2.963101 TGTAGCGGCAGTATGGAAGTAT 59.037 45.455 1.45 0.00 35.86 2.12
4104 7446 2.821991 AGCGGCAGTATGGAAGTATC 57.178 50.000 1.45 0.00 35.86 2.24
4626 8232 4.703897 TCGTTTTGTTCTTCAGTCCTGAT 58.296 39.130 0.00 0.00 39.64 2.90
4831 8532 6.542370 GGAAAATAGTACTGCTGCTTCCAATA 59.458 38.462 5.39 0.00 33.92 1.90
5080 8816 0.611200 ACATGTACCGGCTGTGCTAA 59.389 50.000 0.00 0.00 0.00 3.09
5217 9278 9.453325 GGTTATTTTCGTGAAAGATAAAACACA 57.547 29.630 0.00 0.00 33.56 3.72
5607 9675 1.328430 CCACCTACTCCCTCCGTTCC 61.328 65.000 0.00 0.00 0.00 3.62
5689 9757 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
6175 10250 7.658525 TTTGCCATGTATGATTTCACCTTAT 57.341 32.000 0.00 0.00 0.00 1.73
6745 11354 3.494048 GCTCATATGCTACTCAAGGTGCT 60.494 47.826 0.00 0.00 0.00 4.40
7042 11940 0.107831 GCCAATATCGCACACCCCTA 59.892 55.000 0.00 0.00 0.00 3.53
7344 12402 5.431420 TTGTGTTGTGCTACGAAATTCAT 57.569 34.783 0.00 0.00 0.00 2.57
7348 12406 2.342179 TGTGCTACGAAATTCATGCGA 58.658 42.857 0.00 0.00 0.00 5.10
7547 12611 3.199071 TGGGTTAGCGTACAGATTGGATT 59.801 43.478 0.00 0.00 0.00 3.01
7689 12770 4.579869 AGGGCCATCATATATGTCGTTTC 58.420 43.478 12.42 1.26 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
233 237 3.144506 CAGCCTGTTTGACTCACTCAAT 58.855 45.455 0.00 0.00 38.74 2.57
422 427 0.527600 TGGGAACATCGAGCGAATCG 60.528 55.000 0.00 0.00 44.79 3.34
1063 1085 1.282382 GTAGCAAACCAGAGGGGGTA 58.718 55.000 0.00 0.00 41.32 3.69
1064 1086 2.075837 GTAGCAAACCAGAGGGGGT 58.924 57.895 0.00 0.00 45.04 4.95
1125 1150 0.179094 GCACGTATGATCCCGGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
1183 1208 4.379243 CGAGGTTGCCGTGGAGCT 62.379 66.667 0.00 0.00 0.00 4.09
1460 1527 1.400494 ACGCCGATGTTTCTAAATGGC 59.600 47.619 0.00 0.00 37.66 4.40
1566 1664 6.763610 TGAATTTTGTTTTAACCGGAATGCTT 59.236 30.769 9.46 0.00 0.00 3.91
2214 2374 2.995283 TCACCAGCATGATCAAGGAAG 58.005 47.619 0.00 0.00 39.69 3.46
2228 2388 6.018098 GTCATCTGCTTTCATTAGATCACCAG 60.018 42.308 0.00 0.00 0.00 4.00
2340 2533 5.405269 GCCATAACAATGAACAAACCAAGTC 59.595 40.000 0.00 0.00 0.00 3.01
2963 3201 1.437986 GGAGTAGTAGCACCGCTGG 59.562 63.158 0.00 0.00 40.10 4.85
2992 3230 7.360946 GCACTTCAATGAACGGTAAATAAGAGT 60.361 37.037 0.00 0.00 0.00 3.24
3375 3621 7.416664 GGCTTCTTTGAATAATAGCATCACCAA 60.417 37.037 0.00 0.00 0.00 3.67
4081 7423 1.553248 ACTTCCATACTGCCGCTACAA 59.447 47.619 0.00 0.00 0.00 2.41
4086 7428 1.797025 GGATACTTCCATACTGCCGC 58.203 55.000 0.00 0.00 42.12 6.53
4094 7436 8.344782 CATTGGAGAAATGGTGGATACTTCCAT 61.345 40.741 0.00 0.37 44.09 3.41
4095 7437 7.085023 CATTGGAGAAATGGTGGATACTTCCA 61.085 42.308 0.00 0.00 44.32 3.53
4096 7438 4.503714 TGGAGAAATGGTGGATACTTCC 57.496 45.455 0.00 0.00 42.94 3.46
4097 7439 6.038714 GTCATTGGAGAAATGGTGGATACTTC 59.961 42.308 0.00 0.00 45.00 3.01
4098 7440 5.888161 GTCATTGGAGAAATGGTGGATACTT 59.112 40.000 0.00 0.00 45.00 2.24
4099 7441 5.192522 AGTCATTGGAGAAATGGTGGATACT 59.807 40.000 0.00 0.00 45.00 2.12
4100 7442 5.440610 AGTCATTGGAGAAATGGTGGATAC 58.559 41.667 0.00 0.00 45.00 2.24
4101 7443 5.191522 TGAGTCATTGGAGAAATGGTGGATA 59.808 40.000 0.00 0.00 45.00 2.59
4102 7444 4.018141 TGAGTCATTGGAGAAATGGTGGAT 60.018 41.667 0.00 0.00 45.00 3.41
4103 7445 3.330405 TGAGTCATTGGAGAAATGGTGGA 59.670 43.478 0.00 0.00 45.00 4.02
4104 7446 3.441572 GTGAGTCATTGGAGAAATGGTGG 59.558 47.826 0.00 0.00 45.00 4.61
4556 8161 8.275015 TCAATATGGAAACGACATACAAACAT 57.725 30.769 0.00 0.00 33.98 2.71
4831 8532 7.340999 AGGTGTAAGGTGTTTGTACTTTTGAAT 59.659 33.333 0.00 0.00 0.00 2.57
5060 8796 0.108377 TAGCACAGCCGGTACATGTG 60.108 55.000 20.07 20.07 45.59 3.21
5061 8797 0.611200 TTAGCACAGCCGGTACATGT 59.389 50.000 1.90 2.69 0.00 3.21
5217 9278 2.106166 GGGGACATGAGCAGAGATCAAT 59.894 50.000 0.00 0.00 29.85 2.57
5607 9675 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
5689 9757 4.023726 AGCTTAGTATCTACTCCCTCCG 57.976 50.000 0.00 0.00 37.73 4.63
6083 10157 7.855409 TCAATAACACTGTTTTTCGACAATCAG 59.145 33.333 16.95 16.95 32.04 2.90
6175 10250 6.115446 AGATCAGTTTCAGTCAGTGACAAAA 58.885 36.000 24.73 19.64 33.71 2.44
6352 10705 9.075678 CAAAGATTCATATTAGCCAAGAAGGAT 57.924 33.333 0.00 0.00 41.22 3.24
6353 10706 8.274322 TCAAAGATTCATATTAGCCAAGAAGGA 58.726 33.333 0.00 0.00 41.22 3.36
6745 11354 2.494059 GACACACTGGCAAAGCTAGAA 58.506 47.619 9.39 0.00 39.54 2.10
7042 11940 6.566753 GCGCATAAGAAAGAAAGAAGTTCTGT 60.567 38.462 6.06 0.00 46.36 3.41
7494 12558 2.285977 CCCCTGGCTATTTAACACGAC 58.714 52.381 0.00 0.00 0.00 4.34
7689 12770 3.081804 GTTGTGATTAAGGGAGGGTGTG 58.918 50.000 0.00 0.00 0.00 3.82
7729 12810 4.473444 AGGAATTTTGAGGAGTTCAAGCA 58.527 39.130 0.00 0.00 46.01 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.