Multiple sequence alignment - TraesCS3B01G145000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G145000 chr3B 100.000 2801 0 0 1 2801 133373864 133371064 0.000000e+00 5173
1 TraesCS3B01G145000 chr3B 93.976 913 48 5 1892 2801 10725711 10726619 0.000000e+00 1375
2 TraesCS3B01G145000 chr3B 78.088 753 126 24 4 737 66474949 66475681 9.210000e-120 440
3 TraesCS3B01G145000 chr3A 94.626 1135 43 13 770 1889 101332619 101331488 0.000000e+00 1742
4 TraesCS3B01G145000 chr3D 94.363 1153 31 15 770 1889 84693348 84692197 0.000000e+00 1738
5 TraesCS3B01G145000 chr3D 85.294 918 102 26 1892 2794 148399981 148399082 0.000000e+00 917
6 TraesCS3B01G145000 chr3D 79.420 690 108 20 7 679 42684416 42685088 9.140000e-125 457
7 TraesCS3B01G145000 chr5A 93.333 915 51 7 1892 2801 560361051 560360142 0.000000e+00 1343
8 TraesCS3B01G145000 chr5A 79.767 687 104 15 5 682 546884688 546884028 1.520000e-127 466
9 TraesCS3B01G145000 chr2D 92.912 917 41 8 1892 2801 267291078 267291977 0.000000e+00 1312
10 TraesCS3B01G145000 chr2D 79.947 758 103 33 7 743 102864564 102865293 1.920000e-141 512
11 TraesCS3B01G145000 chr2D 77.882 746 108 34 7 737 6967119 6966416 7.220000e-111 411
12 TraesCS3B01G145000 chr4D 92.151 930 53 12 1886 2801 506855157 506856080 0.000000e+00 1295
13 TraesCS3B01G145000 chr4D 79.893 746 108 25 11 737 107748006 107748728 2.490000e-140 508
14 TraesCS3B01G145000 chr4D 76.780 590 89 22 147 719 501043011 501043569 1.270000e-73 287
15 TraesCS3B01G145000 chr1B 92.891 844 45 11 1965 2801 664980212 664981047 0.000000e+00 1212
16 TraesCS3B01G145000 chr1B 98.810 84 1 0 1295 1378 125847820 125847737 1.740000e-32 150
17 TraesCS3B01G145000 chr6D 86.863 883 92 19 1927 2796 263468466 263467595 0.000000e+00 966
18 TraesCS3B01G145000 chr6D 79.650 742 99 37 12 737 418459138 418458433 1.170000e-133 486
19 TraesCS3B01G145000 chr1A 85.543 920 108 20 1892 2796 481880233 481879324 0.000000e+00 939
20 TraesCS3B01G145000 chr6B 84.505 839 96 26 1892 2713 6529077 6528256 0.000000e+00 798
21 TraesCS3B01G145000 chr6A 83.646 746 89 18 1 737 564676052 564676773 0.000000e+00 671
22 TraesCS3B01G145000 chr5D 81.928 747 103 14 1 737 9391145 9390421 1.110000e-168 603
23 TraesCS3B01G145000 chr5D 80.132 755 109 29 1 743 101695278 101696003 2.470000e-145 525
24 TraesCS3B01G145000 chr5D 78.667 750 97 35 7 736 527145612 527144906 9.210000e-120 440
25 TraesCS3B01G145000 chr5D 77.351 755 114 32 7 737 72588089 72588810 7.270000e-106 394
26 TraesCS3B01G145000 chr2B 81.907 514 79 12 9 511 200474193 200474703 3.340000e-114 422
27 TraesCS3B01G145000 chr7B 77.823 744 121 24 11 737 453016663 453015947 1.200000e-113 420
28 TraesCS3B01G145000 chr7B 75.494 506 82 23 179 671 120380238 120379762 2.830000e-50 209
29 TraesCS3B01G145000 chr1D 76.354 757 122 30 1 737 116906892 116907611 1.230000e-93 353
30 TraesCS3B01G145000 chr7A 96.479 142 5 0 1201 1342 3945874 3946015 4.660000e-58 235
31 TraesCS3B01G145000 chr2A 77.079 445 65 18 300 737 203724481 203724067 3.630000e-54 222
32 TraesCS3B01G145000 chr2A 93.043 115 8 0 1260 1374 734773853 734773967 4.800000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G145000 chr3B 133371064 133373864 2800 True 5173 5173 100.000 1 2801 1 chr3B.!!$R1 2800
1 TraesCS3B01G145000 chr3B 10725711 10726619 908 False 1375 1375 93.976 1892 2801 1 chr3B.!!$F1 909
2 TraesCS3B01G145000 chr3B 66474949 66475681 732 False 440 440 78.088 4 737 1 chr3B.!!$F2 733
3 TraesCS3B01G145000 chr3A 101331488 101332619 1131 True 1742 1742 94.626 770 1889 1 chr3A.!!$R1 1119
4 TraesCS3B01G145000 chr3D 84692197 84693348 1151 True 1738 1738 94.363 770 1889 1 chr3D.!!$R1 1119
5 TraesCS3B01G145000 chr3D 148399082 148399981 899 True 917 917 85.294 1892 2794 1 chr3D.!!$R2 902
6 TraesCS3B01G145000 chr3D 42684416 42685088 672 False 457 457 79.420 7 679 1 chr3D.!!$F1 672
7 TraesCS3B01G145000 chr5A 560360142 560361051 909 True 1343 1343 93.333 1892 2801 1 chr5A.!!$R2 909
8 TraesCS3B01G145000 chr5A 546884028 546884688 660 True 466 466 79.767 5 682 1 chr5A.!!$R1 677
9 TraesCS3B01G145000 chr2D 267291078 267291977 899 False 1312 1312 92.912 1892 2801 1 chr2D.!!$F2 909
10 TraesCS3B01G145000 chr2D 102864564 102865293 729 False 512 512 79.947 7 743 1 chr2D.!!$F1 736
11 TraesCS3B01G145000 chr2D 6966416 6967119 703 True 411 411 77.882 7 737 1 chr2D.!!$R1 730
12 TraesCS3B01G145000 chr4D 506855157 506856080 923 False 1295 1295 92.151 1886 2801 1 chr4D.!!$F3 915
13 TraesCS3B01G145000 chr4D 107748006 107748728 722 False 508 508 79.893 11 737 1 chr4D.!!$F1 726
14 TraesCS3B01G145000 chr4D 501043011 501043569 558 False 287 287 76.780 147 719 1 chr4D.!!$F2 572
15 TraesCS3B01G145000 chr1B 664980212 664981047 835 False 1212 1212 92.891 1965 2801 1 chr1B.!!$F1 836
16 TraesCS3B01G145000 chr6D 263467595 263468466 871 True 966 966 86.863 1927 2796 1 chr6D.!!$R1 869
17 TraesCS3B01G145000 chr6D 418458433 418459138 705 True 486 486 79.650 12 737 1 chr6D.!!$R2 725
18 TraesCS3B01G145000 chr1A 481879324 481880233 909 True 939 939 85.543 1892 2796 1 chr1A.!!$R1 904
19 TraesCS3B01G145000 chr6B 6528256 6529077 821 True 798 798 84.505 1892 2713 1 chr6B.!!$R1 821
20 TraesCS3B01G145000 chr6A 564676052 564676773 721 False 671 671 83.646 1 737 1 chr6A.!!$F1 736
21 TraesCS3B01G145000 chr5D 9390421 9391145 724 True 603 603 81.928 1 737 1 chr5D.!!$R1 736
22 TraesCS3B01G145000 chr5D 101695278 101696003 725 False 525 525 80.132 1 743 1 chr5D.!!$F2 742
23 TraesCS3B01G145000 chr5D 527144906 527145612 706 True 440 440 78.667 7 736 1 chr5D.!!$R2 729
24 TraesCS3B01G145000 chr5D 72588089 72588810 721 False 394 394 77.351 7 737 1 chr5D.!!$F1 730
25 TraesCS3B01G145000 chr2B 200474193 200474703 510 False 422 422 81.907 9 511 1 chr2B.!!$F1 502
26 TraesCS3B01G145000 chr7B 453015947 453016663 716 True 420 420 77.823 11 737 1 chr7B.!!$R2 726
27 TraesCS3B01G145000 chr1D 116906892 116907611 719 False 353 353 76.354 1 737 1 chr1D.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 182 0.180406 ACCAATTAGCAGCTACCGGG 59.820 55.0 6.32 6.28 0.00 5.73 F
942 1021 0.236711 GCATCGATCCAATTCGCCTG 59.763 55.0 0.00 0.00 38.97 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1557 0.322546 GGGGGAAGAAGACGTTGCAT 60.323 55.0 0.0 0.0 0.00 3.96 R
2054 2165 0.671796 ATTCGTGCGGGTGATCGATA 59.328 50.0 0.0 0.0 32.54 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.189287 CCGGGTCAACAATTTCTCAAGAG 59.811 47.826 0.00 0.00 0.00 2.85
41 42 4.065088 CGGGTCAACAATTTCTCAAGAGA 58.935 43.478 0.00 0.00 35.27 3.10
43 44 5.874810 CGGGTCAACAATTTCTCAAGAGATA 59.125 40.000 0.00 0.00 37.29 1.98
140 146 7.835822 TGGATTTGGTTTACGATTTTGATCAT 58.164 30.769 0.00 0.00 0.00 2.45
143 149 5.895636 TGGTTTACGATTTTGATCATGCT 57.104 34.783 0.00 0.00 0.00 3.79
145 151 7.015226 TGGTTTACGATTTTGATCATGCTAG 57.985 36.000 0.00 0.00 0.00 3.42
157 164 8.746922 TTTGATCATGCTAGTGATTTTCAAAC 57.253 30.769 0.00 0.00 38.88 2.93
169 176 5.928264 GTGATTTTCAAACCAATTAGCAGCT 59.072 36.000 0.00 0.00 0.00 4.24
175 182 0.180406 ACCAATTAGCAGCTACCGGG 59.820 55.000 6.32 6.28 0.00 5.73
217 224 2.228480 GCACCCTCCCACCACCTAA 61.228 63.158 0.00 0.00 0.00 2.69
271 286 7.299787 AGCATCAATATAGTACATGCAATCG 57.700 36.000 15.05 0.00 41.98 3.34
273 288 5.761818 TCAATATAGTACATGCAATCGCG 57.238 39.130 0.00 0.00 42.97 5.87
346 367 5.248870 ACACCAGAAAAGTCACATCAAAC 57.751 39.130 0.00 0.00 0.00 2.93
512 543 9.483916 AATATCGACATCCACAATATTAAACGA 57.516 29.630 0.00 0.00 0.00 3.85
513 544 6.578020 TCGACATCCACAATATTAAACGAC 57.422 37.500 0.00 0.00 0.00 4.34
514 545 5.230516 TCGACATCCACAATATTAAACGACG 59.769 40.000 0.00 0.00 0.00 5.12
515 546 5.005012 CGACATCCACAATATTAAACGACGT 59.995 40.000 0.00 0.00 0.00 4.34
516 547 6.340537 ACATCCACAATATTAAACGACGTC 57.659 37.500 5.18 5.18 0.00 4.34
517 548 5.292589 ACATCCACAATATTAAACGACGTCC 59.707 40.000 10.58 0.00 0.00 4.79
518 549 3.858812 TCCACAATATTAAACGACGTCCG 59.141 43.478 10.58 7.90 45.44 4.79
519 550 3.542680 CCACAATATTAAACGACGTCCGC 60.543 47.826 10.58 0.00 43.32 5.54
520 551 3.061028 CACAATATTAAACGACGTCCGCA 59.939 43.478 10.58 0.00 43.32 5.69
521 552 3.679025 ACAATATTAAACGACGTCCGCAA 59.321 39.130 10.58 0.00 43.32 4.85
522 553 4.330620 ACAATATTAAACGACGTCCGCAAT 59.669 37.500 10.58 7.20 43.32 3.56
523 554 5.519566 ACAATATTAAACGACGTCCGCAATA 59.480 36.000 10.58 9.08 43.32 1.90
524 555 6.201425 ACAATATTAAACGACGTCCGCAATAT 59.799 34.615 10.58 10.81 43.32 1.28
525 556 6.774354 ATATTAAACGACGTCCGCAATATT 57.226 33.333 10.58 0.00 43.32 1.28
526 557 7.872163 ATATTAAACGACGTCCGCAATATTA 57.128 32.000 10.58 0.00 43.32 0.98
527 558 6.586868 ATTAAACGACGTCCGCAATATTAA 57.413 33.333 10.58 0.22 43.32 1.40
528 559 4.925061 AAACGACGTCCGCAATATTAAA 57.075 36.364 10.58 0.00 43.32 1.52
529 560 3.912708 ACGACGTCCGCAATATTAAAC 57.087 42.857 10.58 0.00 43.32 2.01
530 561 3.252400 ACGACGTCCGCAATATTAAACA 58.748 40.909 10.58 0.00 43.32 2.83
535 567 6.249682 CGACGTCCGCAATATTAAACAAAAAT 59.750 34.615 10.58 0.00 0.00 1.82
569 608 7.771927 ATCCATTTCATGATGAATCTAACCC 57.228 36.000 8.90 0.00 36.11 4.11
580 619 7.161404 TGATGAATCTAACCCTATCGATTTGG 58.839 38.462 1.71 7.32 0.00 3.28
632 673 7.154656 ACAAATTTGATCAGGCTTAAAAGGTC 58.845 34.615 24.64 0.00 0.00 3.85
633 674 5.921962 ATTTGATCAGGCTTAAAAGGTCC 57.078 39.130 0.00 0.00 0.00 4.46
678 725 9.926158 TGCACATTATATTTTGAAACAATGAGT 57.074 25.926 11.26 0.00 0.00 3.41
713 773 0.667993 AACAACACCAATGACGCAGG 59.332 50.000 0.00 0.00 0.00 4.85
737 797 1.672145 GCACGTCCAACCCTTCTAGTC 60.672 57.143 0.00 0.00 0.00 2.59
738 798 1.616865 CACGTCCAACCCTTCTAGTCA 59.383 52.381 0.00 0.00 0.00 3.41
739 799 2.233922 CACGTCCAACCCTTCTAGTCAT 59.766 50.000 0.00 0.00 0.00 3.06
740 800 2.233922 ACGTCCAACCCTTCTAGTCATG 59.766 50.000 0.00 0.00 0.00 3.07
742 802 3.133003 CGTCCAACCCTTCTAGTCATGAT 59.867 47.826 0.00 0.00 0.00 2.45
744 804 5.163447 CGTCCAACCCTTCTAGTCATGATTA 60.163 44.000 0.00 0.00 0.00 1.75
745 805 6.629515 CGTCCAACCCTTCTAGTCATGATTAA 60.630 42.308 0.00 0.00 0.00 1.40
746 806 7.110155 GTCCAACCCTTCTAGTCATGATTAAA 58.890 38.462 0.00 0.00 0.00 1.52
747 807 7.610305 GTCCAACCCTTCTAGTCATGATTAAAA 59.390 37.037 0.00 0.00 0.00 1.52
748 808 8.167392 TCCAACCCTTCTAGTCATGATTAAAAA 58.833 33.333 0.00 0.00 0.00 1.94
749 809 8.971073 CCAACCCTTCTAGTCATGATTAAAAAT 58.029 33.333 0.00 0.00 0.00 1.82
942 1021 0.236711 GCATCGATCCAATTCGCCTG 59.763 55.000 0.00 0.00 38.97 4.85
989 1069 6.645415 TCTTCGATCAGGAACAAGAAACTAAC 59.355 38.462 0.00 0.00 0.00 2.34
1434 1518 1.302285 CCTGCTCAGGCACCTTGAT 59.698 57.895 2.59 0.00 44.28 2.57
1473 1557 3.760035 GAGGCGTTCCTGCGGAGA 61.760 66.667 5.10 0.00 44.46 3.71
1740 1824 2.032681 AGGCGGTTGAAGGAGCAC 59.967 61.111 0.00 0.00 0.00 4.40
1890 1990 4.908601 AATCGGGTGCAATCCTATATGA 57.091 40.909 5.89 0.00 0.00 2.15
1896 1996 3.138304 GTGCAATCCTATATGAACGCCA 58.862 45.455 0.00 0.00 0.00 5.69
1901 2001 6.488344 TGCAATCCTATATGAACGCCAATAAA 59.512 34.615 0.00 0.00 0.00 1.40
1902 2002 7.013750 TGCAATCCTATATGAACGCCAATAAAA 59.986 33.333 0.00 0.00 0.00 1.52
1923 2023 1.503994 CACACGTGTGGCACAACAA 59.496 52.632 35.65 0.00 44.16 2.83
1997 2098 2.942376 CTGTGTGGGCGAATATTAGCAA 59.058 45.455 20.18 6.93 34.54 3.91
2054 2165 2.935481 GACTTGTTCGATACGAGGGT 57.065 50.000 15.15 1.84 41.84 4.34
2088 2199 1.241315 CGAATTTGTTCGGCAGGGGT 61.241 55.000 2.83 0.00 40.48 4.95
2119 2230 1.302431 CACGCCTCCATCACACCAA 60.302 57.895 0.00 0.00 0.00 3.67
2137 2248 3.636764 ACCAAGCCCTTTTTACTGTGAAG 59.363 43.478 0.00 0.00 0.00 3.02
2154 2267 2.316108 GAAGGAAGGAACAAAAGGCCA 58.684 47.619 5.01 0.00 0.00 5.36
2184 2297 5.476091 ACGAATTAAATGAAAAGGCCCAA 57.524 34.783 0.00 0.00 0.00 4.12
2229 2343 6.424812 ACAAATAAAAGCCAGATTTTGCTCAC 59.575 34.615 3.98 0.00 36.66 3.51
2256 2371 1.749634 AGAAATGCCATCAGCTGCTTC 59.250 47.619 9.47 0.00 44.23 3.86
2369 2488 9.938670 CACATATTTAATGCCCAAAATGAAATG 57.061 29.630 0.00 0.00 0.00 2.32
2550 2684 5.816919 TGTCGTGTTTTGAAGGAGAATTTC 58.183 37.500 0.00 0.00 0.00 2.17
2567 2701 1.588674 TTCGCCGTGTGTGAGAAAAT 58.411 45.000 0.00 0.00 34.33 1.82
2670 2810 8.940952 TGTATGATGAATTTATCGTGTGTGAAA 58.059 29.630 13.68 0.00 0.00 2.69
2759 2903 4.371855 TGCCACAAAATTCACGTAAACA 57.628 36.364 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.482128 TGGCGAATTAAAAGAATTAAATGGGAT 58.518 29.630 0.00 0.00 0.00 3.85
66 68 9.521503 GAAAGAGTTTCAAAATAGGAATATGGC 57.478 33.333 0.00 0.00 39.45 4.40
140 146 7.090173 GCTAATTGGTTTGAAAATCACTAGCA 58.910 34.615 16.97 1.86 38.88 3.49
143 149 7.039784 AGCTGCTAATTGGTTTGAAAATCACTA 60.040 33.333 0.00 0.00 0.00 2.74
145 151 5.928264 AGCTGCTAATTGGTTTGAAAATCAC 59.072 36.000 0.00 0.00 0.00 3.06
157 164 1.166531 GCCCGGTAGCTGCTAATTGG 61.167 60.000 11.57 12.66 0.00 3.16
169 176 7.608761 GGATTGATGTATTTTTATAGCCCGGTA 59.391 37.037 0.00 0.00 0.00 4.02
175 182 6.021596 CGCGGGATTGATGTATTTTTATAGC 58.978 40.000 0.00 0.00 0.00 2.97
217 224 3.003689 CACATGGTGACGCTTCTTTTCTT 59.996 43.478 0.00 0.00 35.23 2.52
271 286 0.373716 ATGAGAAATTTCCGCGACGC 59.626 50.000 14.61 10.49 0.00 5.19
273 288 7.682865 CGTATATTTATGAGAAATTTCCGCGAC 59.317 37.037 14.61 2.94 0.00 5.19
511 542 6.914760 TTTTTGTTTAATATTGCGGACGTC 57.085 33.333 7.13 7.13 0.00 4.34
512 543 8.238631 ACTATTTTTGTTTAATATTGCGGACGT 58.761 29.630 0.00 0.00 0.00 4.34
513 544 8.609478 ACTATTTTTGTTTAATATTGCGGACG 57.391 30.769 0.00 0.00 0.00 4.79
620 660 3.566742 TGAAAAGTCGGACCTTTTAAGCC 59.433 43.478 4.14 1.39 42.98 4.35
621 661 4.823790 TGAAAAGTCGGACCTTTTAAGC 57.176 40.909 4.14 1.68 42.98 3.09
713 773 0.591659 GAAGGGTTGGACGTGCTTTC 59.408 55.000 8.99 1.39 0.00 2.62
787 847 3.878086 TTAACGCAAGACAGAAGCAAG 57.122 42.857 0.00 0.00 43.62 4.01
834 894 8.397148 CGGGTTACAAAACAACTAAAAGTAAGA 58.603 33.333 0.00 0.00 37.34 2.10
942 1021 1.376609 CTCCGGCTATTGTTGTGGGC 61.377 60.000 0.00 0.00 0.00 5.36
989 1069 1.009078 ATGCGACATGATTGACGTGG 58.991 50.000 0.00 0.00 41.91 4.94
1171 1255 1.880894 CCTCGTAGCTGTCGTCCAA 59.119 57.895 0.00 0.00 0.00 3.53
1419 1503 2.413142 GCCATCAAGGTGCCTGAGC 61.413 63.158 0.00 0.00 40.61 4.26
1473 1557 0.322546 GGGGGAAGAAGACGTTGCAT 60.323 55.000 0.00 0.00 0.00 3.96
1580 1664 1.613630 ACCAGCTCCAGGAATCGGT 60.614 57.895 0.00 0.00 0.00 4.69
1740 1824 2.099921 CTCATCGTGGTACTGAAGGAGG 59.900 54.545 0.00 0.00 0.00 4.30
1873 1973 2.484264 GCGTTCATATAGGATTGCACCC 59.516 50.000 6.52 0.00 0.00 4.61
1890 1990 1.335506 CGTGTGGCTTTTATTGGCGTT 60.336 47.619 0.00 0.00 0.00 4.84
2054 2165 0.671796 ATTCGTGCGGGTGATCGATA 59.328 50.000 0.00 0.00 32.54 2.92
2088 2199 4.323477 GCGTGTGGGCTGTGGGTA 62.323 66.667 0.00 0.00 0.00 3.69
2119 2230 3.876309 TCCTTCACAGTAAAAAGGGCT 57.124 42.857 8.13 0.00 40.03 5.19
2137 2248 2.039418 AGTTGGCCTTTTGTTCCTTCC 58.961 47.619 3.32 0.00 0.00 3.46
2154 2267 7.595130 GCCTTTTCATTTAATTCGTTCTCAGTT 59.405 33.333 0.00 0.00 0.00 3.16
2229 2343 4.514441 CAGCTGATGGCATTTCTTAGTAGG 59.486 45.833 8.42 0.00 44.79 3.18
2550 2684 1.795872 TGTATTTTCTCACACACGGCG 59.204 47.619 4.80 4.80 0.00 6.46
2683 2824 9.748708 TTTCTTGTTCATAGTTGATTTTCCAAG 57.251 29.630 0.00 0.00 0.00 3.61
2722 2863 6.502136 TTGTGGCATGTTTTGATACGAATA 57.498 33.333 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.