Multiple sequence alignment - TraesCS3B01G144000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G144000 chr3B 100.000 5070 0 0 1 5070 132630829 132625760 0.000000e+00 9363.0
1 TraesCS3B01G144000 chr3B 91.639 2428 149 20 1823 4225 131518213 131515815 0.000000e+00 3310.0
2 TraesCS3B01G144000 chr3B 87.865 857 57 24 972 1822 131519061 131518246 0.000000e+00 963.0
3 TraesCS3B01G144000 chr3B 91.346 624 27 11 4466 5070 131515595 131514980 0.000000e+00 828.0
4 TraesCS3B01G144000 chr3B 79.177 413 25 18 1 383 607390018 607390399 3.950000e-56 230.0
5 TraesCS3B01G144000 chr3B 82.857 210 14 7 3 190 25218784 25218993 8.730000e-38 169.0
6 TraesCS3B01G144000 chr3B 83.916 143 18 2 380 518 607399990 607400131 1.150000e-26 132.0
7 TraesCS3B01G144000 chr3A 93.002 3301 152 33 1819 5070 100012311 100015581 0.000000e+00 4743.0
8 TraesCS3B01G144000 chr3A 89.944 885 31 19 952 1822 100011381 100012221 0.000000e+00 1088.0
9 TraesCS3B01G144000 chr3A 82.791 430 31 25 519 943 100010886 100011277 1.350000e-90 344.0
10 TraesCS3B01G144000 chr3A 84.031 382 26 9 1056 1437 243662405 243662751 8.130000e-88 335.0
11 TraesCS3B01G144000 chr3A 89.305 187 13 3 3878 4060 100019438 100019621 1.420000e-55 228.0
12 TraesCS3B01G144000 chr3D 92.965 3298 151 29 1819 5070 83917263 83920525 0.000000e+00 4730.0
13 TraesCS3B01G144000 chr3D 90.378 873 48 21 955 1822 83916335 83917176 0.000000e+00 1114.0
14 TraesCS3B01G144000 chr3D 84.085 377 34 19 588 960 83915861 83916215 1.750000e-89 340.0
15 TraesCS3B01G144000 chr3D 92.920 113 8 0 4958 5070 83940060 83940172 1.130000e-36 165.0
16 TraesCS3B01G144000 chr2B 89.340 394 37 3 1819 2212 73147664 73147276 1.640000e-134 490.0
17 TraesCS3B01G144000 chr2B 86.131 274 34 3 1822 2095 104796522 104796253 4.960000e-75 292.0
18 TraesCS3B01G144000 chr2B 92.857 182 11 2 1641 1822 73147924 73147745 3.890000e-66 263.0
19 TraesCS3B01G144000 chr2B 85.922 206 12 9 1223 1427 73149397 73149208 2.390000e-48 204.0
20 TraesCS3B01G144000 chr4A 90.057 352 20 5 1473 1809 703784462 703784813 4.660000e-120 442.0
21 TraesCS3B01G144000 chr4A 88.493 365 27 5 1473 1822 10028565 10028201 1.300000e-115 427.0
22 TraesCS3B01G144000 chr4A 84.158 202 17 9 1473 1659 727041057 727041258 1.120000e-41 182.0
23 TraesCS3B01G144000 chr4A 93.617 94 6 0 1056 1149 404786402 404786495 1.900000e-29 141.0
24 TraesCS3B01G144000 chr4A 87.500 64 3 3 1199 1262 404786506 404786564 9.110000e-08 69.4
25 TraesCS3B01G144000 chr6A 88.493 365 27 5 1473 1822 571222713 571222349 1.300000e-115 427.0
26 TraesCS3B01G144000 chr6A 95.181 83 4 0 1312 1394 58746180 58746098 1.150000e-26 132.0
27 TraesCS3B01G144000 chr6A 95.181 83 4 0 1312 1394 92816863 92816781 1.150000e-26 132.0
28 TraesCS3B01G144000 chr1B 87.945 365 29 5 1473 1822 562247646 562248010 2.820000e-112 416.0
29 TraesCS3B01G144000 chr1B 81.004 558 34 30 1 522 84382544 84383065 1.330000e-100 377.0
30 TraesCS3B01G144000 chr1B 83.032 277 40 4 1819 2095 198562012 198562281 1.410000e-60 244.0
31 TraesCS3B01G144000 chr1B 84.416 231 32 3 1865 2095 198561589 198561815 1.840000e-54 224.0
32 TraesCS3B01G144000 chr1B 89.922 129 11 2 4811 4938 585895812 585895685 1.130000e-36 165.0
33 TraesCS3B01G144000 chr1B 94.118 85 5 0 1 85 9718611 9718527 4.120000e-26 130.0
34 TraesCS3B01G144000 chr1A 87.397 365 27 12 1473 1822 417204690 417204330 7.910000e-108 401.0
35 TraesCS3B01G144000 chr7A 83.247 388 28 14 1056 1443 623777170 623776820 6.330000e-84 322.0
36 TraesCS3B01G144000 chr7A 96.809 94 3 0 1056 1149 580362448 580362541 1.890000e-34 158.0
37 TraesCS3B01G144000 chr7A 82.407 108 18 1 411 518 639788179 639788285 5.400000e-15 93.5
38 TraesCS3B01G144000 chr2A 82.990 388 30 10 1056 1443 606238606 606238255 8.190000e-83 318.0
39 TraesCS3B01G144000 chr2A 95.349 43 2 0 1199 1241 42742228 42742186 9.110000e-08 69.4
40 TraesCS3B01G144000 chr2D 87.004 277 31 4 1819 2095 628886278 628886549 1.770000e-79 307.0
41 TraesCS3B01G144000 chr2D 85.199 277 34 4 1819 2095 628886745 628887014 1.390000e-70 278.0
42 TraesCS3B01G144000 chr2D 80.693 202 31 6 4813 5012 222645433 222645628 3.160000e-32 150.0
43 TraesCS3B01G144000 chr5B 87.891 256 15 6 272 518 709370842 709371090 2.310000e-73 287.0
44 TraesCS3B01G144000 chr5B 87.143 210 12 8 1056 1265 538080631 538080437 1.840000e-54 224.0
45 TraesCS3B01G144000 chr5B 81.065 169 11 10 1 149 709370673 709370840 1.150000e-21 115.0
46 TraesCS3B01G144000 chr7B 87.619 210 11 10 1056 1265 74053949 74053755 3.950000e-56 230.0
47 TraesCS3B01G144000 chr7B 87.204 211 12 8 1055 1265 74047679 74047874 5.110000e-55 226.0
48 TraesCS3B01G144000 chr7B 88.043 184 12 2 1058 1241 657584473 657584300 5.140000e-50 209.0
49 TraesCS3B01G144000 chr7B 82.673 202 20 7 1473 1659 660137411 660137612 1.130000e-36 165.0
50 TraesCS3B01G144000 chr7B 85.350 157 19 2 4902 5057 58724922 58724769 5.250000e-35 159.0
51 TraesCS3B01G144000 chr7B 80.263 152 23 3 371 518 403407904 403407756 1.930000e-19 108.0
52 TraesCS3B01G144000 chr7B 86.765 68 7 2 4994 5060 126162095 126162161 1.960000e-09 75.0
53 TraesCS3B01G144000 chr7B 88.136 59 5 2 5003 5060 126192873 126192816 9.110000e-08 69.4
54 TraesCS3B01G144000 chr7D 85.350 157 20 1 4913 5069 636486245 636486092 5.250000e-35 159.0
55 TraesCS3B01G144000 chr5A 93.617 94 6 0 1056 1149 709007354 709007447 1.900000e-29 141.0
56 TraesCS3B01G144000 chr4B 85.714 112 15 1 411 522 97250594 97250704 3.210000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G144000 chr3B 132625760 132630829 5069 True 9363.000000 9363 100.000000 1 5070 1 chr3B.!!$R1 5069
1 TraesCS3B01G144000 chr3B 131514980 131519061 4081 True 1700.333333 3310 90.283333 972 5070 3 chr3B.!!$R2 4098
2 TraesCS3B01G144000 chr3A 100010886 100019621 8735 False 1600.750000 4743 88.760500 519 5070 4 chr3A.!!$F2 4551
3 TraesCS3B01G144000 chr3D 83915861 83920525 4664 False 2061.333333 4730 89.142667 588 5070 3 chr3D.!!$F2 4482
4 TraesCS3B01G144000 chr2B 73147276 73149397 2121 True 319.000000 490 89.373000 1223 2212 3 chr2B.!!$R2 989
5 TraesCS3B01G144000 chr1B 84382544 84383065 521 False 377.000000 377 81.004000 1 522 1 chr1B.!!$F1 521
6 TraesCS3B01G144000 chr1B 198561589 198562281 692 False 234.000000 244 83.724000 1819 2095 2 chr1B.!!$F3 276
7 TraesCS3B01G144000 chr2D 628886278 628887014 736 False 292.500000 307 86.101500 1819 2095 2 chr2D.!!$F2 276

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 605 0.033366 TCCATCTGTGTGTGTGGACG 59.967 55.0 0.00 0.0 35.91 4.79 F
812 841 0.037697 TACGCCAGTTGTGCCTACAG 60.038 55.0 0.00 0.0 38.23 2.74 F
1770 3199 0.179034 GGGATCTGCAGCTCGGAATT 60.179 55.0 9.47 0.0 32.98 2.17 F
2883 4471 0.250901 GCAGCCCTCTGAAACAGGAA 60.251 55.0 0.00 0.0 42.95 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 3696 0.538287 ACAGGAAAAGCAGTCCCAGC 60.538 55.0 0.0 0.0 35.59 4.85 R
2628 4216 0.673022 CAGTCTGGTTCAGCCTGAGC 60.673 60.0 0.0 0.0 39.46 4.26 R
3660 5248 0.909133 TAGCAGCATCCTCACCACCA 60.909 55.0 0.0 0.0 0.00 4.17 R
4802 6517 0.106419 TTGGGCGTTTTCCAACTCCT 60.106 50.0 0.0 0.0 37.83 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 7.875041 TCACAGTTTTTCCAAGAAAATGTTTCA 59.125 29.630 3.53 0.00 40.96 2.69
165 189 2.830321 CCACTCCCGAGGTTACTAGTTT 59.170 50.000 0.00 0.00 0.00 2.66
177 204 6.702329 AGGTTACTAGTTTGAATCCTGTCAG 58.298 40.000 0.00 0.00 0.00 3.51
192 219 2.923655 CTGTCAGGCACATTACGTACTG 59.076 50.000 11.04 11.04 33.23 2.74
223 250 6.903883 TTTTTATCGCTCCTGATACAAGAC 57.096 37.500 0.00 0.00 30.77 3.01
226 253 3.510388 TCGCTCCTGATACAAGACAAG 57.490 47.619 0.00 0.00 0.00 3.16
228 255 2.926200 CGCTCCTGATACAAGACAAGTG 59.074 50.000 0.00 0.00 0.00 3.16
229 256 3.265791 GCTCCTGATACAAGACAAGTGG 58.734 50.000 0.00 0.00 0.00 4.00
230 257 3.866651 CTCCTGATACAAGACAAGTGGG 58.133 50.000 0.00 0.00 0.00 4.61
232 259 3.650942 TCCTGATACAAGACAAGTGGGTT 59.349 43.478 0.00 0.00 0.00 4.11
233 260 4.003648 CCTGATACAAGACAAGTGGGTTC 58.996 47.826 0.00 0.00 0.00 3.62
234 261 3.659786 TGATACAAGACAAGTGGGTTCG 58.340 45.455 0.00 0.00 0.00 3.95
235 262 1.873698 TACAAGACAAGTGGGTTCGC 58.126 50.000 0.00 0.00 0.00 4.70
236 263 0.107410 ACAAGACAAGTGGGTTCGCA 60.107 50.000 0.00 0.00 0.00 5.10
238 265 0.468226 AAGACAAGTGGGTTCGCAGA 59.532 50.000 0.00 0.00 0.00 4.26
239 266 0.468226 AGACAAGTGGGTTCGCAGAA 59.532 50.000 0.00 0.00 45.90 3.02
240 267 1.134220 AGACAAGTGGGTTCGCAGAAA 60.134 47.619 0.00 0.00 45.90 2.52
242 269 1.404035 ACAAGTGGGTTCGCAGAAAAC 59.596 47.619 0.00 0.00 45.90 2.43
243 270 0.661020 AAGTGGGTTCGCAGAAAACG 59.339 50.000 0.00 0.00 45.90 3.60
245 272 0.658897 GTGGGTTCGCAGAAAACGAA 59.341 50.000 0.00 0.00 46.45 3.85
254 281 6.633668 TTCGCAGAAAACGAAAAATGAAAA 57.366 29.167 0.00 0.00 45.72 2.29
255 282 6.633668 TCGCAGAAAACGAAAAATGAAAAA 57.366 29.167 0.00 0.00 36.44 1.94
256 283 6.462647 TCGCAGAAAACGAAAAATGAAAAAC 58.537 32.000 0.00 0.00 36.44 2.43
257 284 6.089551 TCGCAGAAAACGAAAAATGAAAAACA 59.910 30.769 0.00 0.00 36.44 2.83
259 286 7.452231 GCAGAAAACGAAAAATGAAAAACAGA 58.548 30.769 0.00 0.00 0.00 3.41
261 288 9.249844 CAGAAAACGAAAAATGAAAAACAGAAC 57.750 29.630 0.00 0.00 0.00 3.01
262 289 8.983724 AGAAAACGAAAAATGAAAAACAGAACA 58.016 25.926 0.00 0.00 0.00 3.18
263 290 9.249844 GAAAACGAAAAATGAAAAACAGAACAG 57.750 29.630 0.00 0.00 0.00 3.16
264 291 8.527567 AAACGAAAAATGAAAAACAGAACAGA 57.472 26.923 0.00 0.00 0.00 3.41
265 292 7.740519 ACGAAAAATGAAAAACAGAACAGAG 57.259 32.000 0.00 0.00 0.00 3.35
266 293 6.253512 ACGAAAAATGAAAAACAGAACAGAGC 59.746 34.615 0.00 0.00 0.00 4.09
267 294 6.558433 CGAAAAATGAAAAACAGAACAGAGCG 60.558 38.462 0.00 0.00 0.00 5.03
268 295 5.499139 AAATGAAAAACAGAACAGAGCGA 57.501 34.783 0.00 0.00 0.00 4.93
270 297 3.531538 TGAAAAACAGAACAGAGCGAGT 58.468 40.909 0.00 0.00 0.00 4.18
271 298 3.309682 TGAAAAACAGAACAGAGCGAGTG 59.690 43.478 0.00 0.00 0.00 3.51
272 299 1.221414 AAACAGAACAGAGCGAGTGC 58.779 50.000 0.00 0.00 43.24 4.40
273 300 0.601311 AACAGAACAGAGCGAGTGCC 60.601 55.000 0.00 0.00 44.31 5.01
275 302 2.210013 AGAACAGAGCGAGTGCCCA 61.210 57.895 0.00 0.00 44.31 5.36
276 303 1.301716 GAACAGAGCGAGTGCCCAA 60.302 57.895 0.00 0.00 44.31 4.12
277 304 1.294659 GAACAGAGCGAGTGCCCAAG 61.295 60.000 0.00 0.00 44.31 3.61
278 305 3.123620 CAGAGCGAGTGCCCAAGC 61.124 66.667 0.00 0.00 44.31 4.01
290 317 1.959085 CCCAAGCAACTGCGTTGAT 59.041 52.632 20.50 13.94 45.28 2.57
291 318 0.387622 CCCAAGCAACTGCGTTGATG 60.388 55.000 20.50 17.11 45.28 3.07
293 320 0.387622 CAAGCAACTGCGTTGATGGG 60.388 55.000 20.50 9.98 45.28 4.00
294 321 2.126346 GCAACTGCGTTGATGGGC 60.126 61.111 20.50 5.59 45.28 5.36
295 322 2.629656 GCAACTGCGTTGATGGGCT 61.630 57.895 20.50 0.00 45.28 5.19
296 323 1.210931 CAACTGCGTTGATGGGCTG 59.789 57.895 13.79 0.00 45.28 4.85
297 324 1.973281 AACTGCGTTGATGGGCTGG 60.973 57.895 0.00 0.00 33.07 4.85
298 325 2.046023 CTGCGTTGATGGGCTGGA 60.046 61.111 0.00 0.00 0.00 3.86
299 326 2.359850 TGCGTTGATGGGCTGGAC 60.360 61.111 0.00 0.00 0.00 4.02
300 327 3.134127 GCGTTGATGGGCTGGACC 61.134 66.667 0.00 0.00 37.93 4.46
301 328 2.819595 CGTTGATGGGCTGGACCG 60.820 66.667 0.00 0.00 40.62 4.79
302 329 2.668632 GTTGATGGGCTGGACCGA 59.331 61.111 0.00 0.00 40.62 4.69
303 330 1.224592 GTTGATGGGCTGGACCGAT 59.775 57.895 0.00 0.00 40.06 4.18
305 332 0.331278 TTGATGGGCTGGACCGATTT 59.669 50.000 0.00 0.00 36.92 2.17
306 333 1.208706 TGATGGGCTGGACCGATTTA 58.791 50.000 0.00 0.00 36.92 1.40
308 335 2.224523 TGATGGGCTGGACCGATTTATC 60.225 50.000 0.00 0.00 36.92 1.75
309 336 0.472471 TGGGCTGGACCGATTTATCC 59.528 55.000 0.00 0.00 40.62 2.59
310 337 0.765510 GGGCTGGACCGATTTATCCT 59.234 55.000 0.00 0.00 40.62 3.24
311 338 1.975680 GGGCTGGACCGATTTATCCTA 59.024 52.381 0.00 0.00 40.62 2.94
312 339 2.028020 GGGCTGGACCGATTTATCCTAG 60.028 54.545 0.00 0.00 40.62 3.02
314 341 3.830755 GGCTGGACCGATTTATCCTAGTA 59.169 47.826 0.00 0.00 35.86 1.82
316 343 5.394333 GGCTGGACCGATTTATCCTAGTATC 60.394 48.000 0.00 0.00 35.86 2.24
317 344 5.394333 GCTGGACCGATTTATCCTAGTATCC 60.394 48.000 0.00 0.00 35.86 2.59
318 345 5.647230 TGGACCGATTTATCCTAGTATCCA 58.353 41.667 0.00 0.00 35.86 3.41
319 346 5.715279 TGGACCGATTTATCCTAGTATCCAG 59.285 44.000 0.00 0.00 35.86 3.86
320 347 5.715753 GGACCGATTTATCCTAGTATCCAGT 59.284 44.000 0.00 0.00 31.75 4.00
321 348 6.127675 GGACCGATTTATCCTAGTATCCAGTC 60.128 46.154 0.00 0.00 31.75 3.51
322 349 6.312529 ACCGATTTATCCTAGTATCCAGTCA 58.687 40.000 0.00 0.00 0.00 3.41
324 351 6.434652 CCGATTTATCCTAGTATCCAGTCAGT 59.565 42.308 0.00 0.00 0.00 3.41
325 352 7.362229 CCGATTTATCCTAGTATCCAGTCAGTC 60.362 44.444 0.00 0.00 0.00 3.51
328 355 7.825331 TTATCCTAGTATCCAGTCAGTCAAG 57.175 40.000 0.00 0.00 0.00 3.02
329 356 5.194473 TCCTAGTATCCAGTCAGTCAAGT 57.806 43.478 0.00 0.00 0.00 3.16
330 357 6.323210 TCCTAGTATCCAGTCAGTCAAGTA 57.677 41.667 0.00 0.00 0.00 2.24
331 358 6.358178 TCCTAGTATCCAGTCAGTCAAGTAG 58.642 44.000 0.00 0.00 0.00 2.57
332 359 4.993029 AGTATCCAGTCAGTCAAGTAGC 57.007 45.455 0.00 0.00 0.00 3.58
333 360 4.605183 AGTATCCAGTCAGTCAAGTAGCT 58.395 43.478 0.00 0.00 0.00 3.32
334 361 5.020132 AGTATCCAGTCAGTCAAGTAGCTT 58.980 41.667 0.00 0.00 0.00 3.74
336 363 4.689612 TCCAGTCAGTCAAGTAGCTTTT 57.310 40.909 0.00 0.00 0.00 2.27
337 364 5.036117 TCCAGTCAGTCAAGTAGCTTTTT 57.964 39.130 0.00 0.00 0.00 1.94
338 365 5.057149 TCCAGTCAGTCAAGTAGCTTTTTC 58.943 41.667 0.00 0.00 0.00 2.29
339 366 5.059833 CCAGTCAGTCAAGTAGCTTTTTCT 58.940 41.667 0.00 0.00 0.00 2.52
340 367 5.178438 CCAGTCAGTCAAGTAGCTTTTTCTC 59.822 44.000 0.00 0.00 0.00 2.87
341 368 5.755375 CAGTCAGTCAAGTAGCTTTTTCTCA 59.245 40.000 0.00 0.00 0.00 3.27
342 369 6.258727 CAGTCAGTCAAGTAGCTTTTTCTCAA 59.741 38.462 0.00 0.00 0.00 3.02
343 370 6.823689 AGTCAGTCAAGTAGCTTTTTCTCAAA 59.176 34.615 0.00 0.00 0.00 2.69
373 400 6.808008 AAACAAGTCAGTCATGTATCCTTG 57.192 37.500 10.88 10.88 0.00 3.61
374 401 4.256920 ACAAGTCAGTCATGTATCCTTGC 58.743 43.478 11.80 0.00 0.00 4.01
375 402 3.550437 AGTCAGTCATGTATCCTTGCC 57.450 47.619 0.00 0.00 0.00 4.52
378 405 2.571202 TCAGTCATGTATCCTTGCCACA 59.429 45.455 0.00 0.00 0.00 4.17
379 406 3.200605 TCAGTCATGTATCCTTGCCACAT 59.799 43.478 0.00 0.00 33.22 3.21
381 408 3.200605 AGTCATGTATCCTTGCCACATCA 59.799 43.478 0.00 0.00 30.59 3.07
382 409 3.562973 GTCATGTATCCTTGCCACATCAG 59.437 47.826 0.00 0.00 30.59 2.90
383 410 2.042686 TGTATCCTTGCCACATCAGC 57.957 50.000 0.00 0.00 0.00 4.26
384 411 0.940126 GTATCCTTGCCACATCAGCG 59.060 55.000 0.00 0.00 0.00 5.18
385 412 0.829990 TATCCTTGCCACATCAGCGA 59.170 50.000 0.00 0.00 0.00 4.93
386 413 0.463295 ATCCTTGCCACATCAGCGAG 60.463 55.000 0.00 0.00 40.81 5.03
388 415 0.108186 CCTTGCCACATCAGCGAGTA 60.108 55.000 0.00 0.00 39.70 2.59
389 416 1.473965 CCTTGCCACATCAGCGAGTAT 60.474 52.381 0.00 0.00 39.70 2.12
390 417 2.224042 CCTTGCCACATCAGCGAGTATA 60.224 50.000 0.00 0.00 39.70 1.47
391 418 2.800881 TGCCACATCAGCGAGTATAG 57.199 50.000 0.00 0.00 0.00 1.31
392 419 1.269778 TGCCACATCAGCGAGTATAGC 60.270 52.381 0.00 0.00 36.79 2.97
393 420 1.269778 GCCACATCAGCGAGTATAGCA 60.270 52.381 0.00 0.00 40.10 3.49
394 421 2.670479 CCACATCAGCGAGTATAGCAG 58.330 52.381 0.00 0.00 40.10 4.24
395 422 2.057316 CACATCAGCGAGTATAGCAGC 58.943 52.381 0.00 0.00 40.10 5.25
396 423 1.959985 ACATCAGCGAGTATAGCAGCT 59.040 47.619 0.00 0.00 40.10 4.24
397 424 3.057946 CACATCAGCGAGTATAGCAGCTA 60.058 47.826 4.10 4.10 40.10 3.32
398 425 3.570125 ACATCAGCGAGTATAGCAGCTAA 59.430 43.478 6.13 0.00 40.10 3.09
399 426 4.038042 ACATCAGCGAGTATAGCAGCTAAA 59.962 41.667 6.13 0.00 40.10 1.85
400 427 3.966154 TCAGCGAGTATAGCAGCTAAAC 58.034 45.455 6.13 0.00 40.10 2.01
401 428 3.380320 TCAGCGAGTATAGCAGCTAAACA 59.620 43.478 6.13 0.00 40.10 2.83
402 429 3.487574 CAGCGAGTATAGCAGCTAAACAC 59.512 47.826 6.13 5.24 40.10 3.32
403 430 2.795470 GCGAGTATAGCAGCTAAACACC 59.205 50.000 6.13 0.00 36.44 4.16
404 431 3.381949 CGAGTATAGCAGCTAAACACCC 58.618 50.000 6.13 0.00 0.00 4.61
405 432 3.068307 CGAGTATAGCAGCTAAACACCCT 59.932 47.826 6.13 0.00 0.00 4.34
406 433 4.623002 GAGTATAGCAGCTAAACACCCTC 58.377 47.826 6.13 2.51 0.00 4.30
407 434 4.030913 AGTATAGCAGCTAAACACCCTCA 58.969 43.478 6.13 0.00 0.00 3.86
408 435 4.469945 AGTATAGCAGCTAAACACCCTCAA 59.530 41.667 6.13 0.00 0.00 3.02
409 436 2.191128 AGCAGCTAAACACCCTCAAG 57.809 50.000 0.00 0.00 0.00 3.02
410 437 1.699634 AGCAGCTAAACACCCTCAAGA 59.300 47.619 0.00 0.00 0.00 3.02
411 438 2.106511 AGCAGCTAAACACCCTCAAGAA 59.893 45.455 0.00 0.00 0.00 2.52
412 439 2.884639 GCAGCTAAACACCCTCAAGAAA 59.115 45.455 0.00 0.00 0.00 2.52
413 440 3.317993 GCAGCTAAACACCCTCAAGAAAA 59.682 43.478 0.00 0.00 0.00 2.29
414 441 4.021981 GCAGCTAAACACCCTCAAGAAAAT 60.022 41.667 0.00 0.00 0.00 1.82
415 442 5.183140 GCAGCTAAACACCCTCAAGAAAATA 59.817 40.000 0.00 0.00 0.00 1.40
416 443 6.623767 GCAGCTAAACACCCTCAAGAAAATAG 60.624 42.308 0.00 0.00 0.00 1.73
417 444 6.655003 CAGCTAAACACCCTCAAGAAAATAGA 59.345 38.462 0.00 0.00 0.00 1.98
418 445 6.655425 AGCTAAACACCCTCAAGAAAATAGAC 59.345 38.462 0.00 0.00 0.00 2.59
419 446 6.127980 GCTAAACACCCTCAAGAAAATAGACC 60.128 42.308 0.00 0.00 0.00 3.85
420 447 3.939066 ACACCCTCAAGAAAATAGACCG 58.061 45.455 0.00 0.00 0.00 4.79
421 448 3.270877 CACCCTCAAGAAAATAGACCGG 58.729 50.000 0.00 0.00 0.00 5.28
422 449 2.238898 ACCCTCAAGAAAATAGACCGGG 59.761 50.000 6.32 0.00 35.32 5.73
423 450 2.504175 CCCTCAAGAAAATAGACCGGGA 59.496 50.000 6.32 0.00 0.00 5.14
424 451 3.432326 CCCTCAAGAAAATAGACCGGGAG 60.432 52.174 6.32 0.00 0.00 4.30
425 452 3.198872 CTCAAGAAAATAGACCGGGAGC 58.801 50.000 6.32 0.00 0.00 4.70
426 453 1.933853 CAAGAAAATAGACCGGGAGCG 59.066 52.381 6.32 0.00 0.00 5.03
427 454 0.464452 AGAAAATAGACCGGGAGCGG 59.536 55.000 6.32 0.00 0.00 5.52
428 455 0.462789 GAAAATAGACCGGGAGCGGA 59.537 55.000 6.32 0.00 0.00 5.54
429 456 0.464452 AAAATAGACCGGGAGCGGAG 59.536 55.000 6.32 0.00 0.00 4.63
430 457 0.396695 AAATAGACCGGGAGCGGAGA 60.397 55.000 6.32 0.00 0.00 3.71
431 458 0.396695 AATAGACCGGGAGCGGAGAA 60.397 55.000 6.32 0.00 0.00 2.87
432 459 0.178958 ATAGACCGGGAGCGGAGAAT 60.179 55.000 6.32 0.00 0.00 2.40
433 460 0.396695 TAGACCGGGAGCGGAGAATT 60.397 55.000 6.32 0.00 0.00 2.17
434 461 1.221021 GACCGGGAGCGGAGAATTT 59.779 57.895 6.32 0.00 0.00 1.82
435 462 1.078426 ACCGGGAGCGGAGAATTTG 60.078 57.895 6.32 0.00 0.00 2.32
436 463 1.819632 CCGGGAGCGGAGAATTTGG 60.820 63.158 0.00 0.00 0.00 3.28
437 464 1.078426 CGGGAGCGGAGAATTTGGT 60.078 57.895 0.00 0.00 0.00 3.67
438 465 1.369091 CGGGAGCGGAGAATTTGGTG 61.369 60.000 0.00 0.00 0.00 4.17
439 466 0.322546 GGGAGCGGAGAATTTGGTGT 60.323 55.000 0.00 0.00 0.00 4.16
440 467 0.804989 GGAGCGGAGAATTTGGTGTG 59.195 55.000 0.00 0.00 0.00 3.82
441 468 0.169009 GAGCGGAGAATTTGGTGTGC 59.831 55.000 0.00 0.00 0.00 4.57
442 469 0.250901 AGCGGAGAATTTGGTGTGCT 60.251 50.000 0.00 0.00 0.00 4.40
443 470 1.003118 AGCGGAGAATTTGGTGTGCTA 59.997 47.619 0.00 0.00 0.00 3.49
444 471 1.810151 GCGGAGAATTTGGTGTGCTAA 59.190 47.619 0.00 0.00 0.00 3.09
445 472 2.423538 GCGGAGAATTTGGTGTGCTAAT 59.576 45.455 0.00 0.00 0.00 1.73
446 473 3.625764 GCGGAGAATTTGGTGTGCTAATA 59.374 43.478 0.00 0.00 0.00 0.98
447 474 4.275936 GCGGAGAATTTGGTGTGCTAATAT 59.724 41.667 0.00 0.00 0.00 1.28
448 475 5.221048 GCGGAGAATTTGGTGTGCTAATATT 60.221 40.000 0.00 0.00 0.00 1.28
449 476 6.430451 CGGAGAATTTGGTGTGCTAATATTC 58.570 40.000 0.00 0.00 0.00 1.75
450 477 6.430451 GGAGAATTTGGTGTGCTAATATTCG 58.570 40.000 0.00 0.00 0.00 3.34
451 478 6.377327 AGAATTTGGTGTGCTAATATTCGG 57.623 37.500 0.00 0.00 0.00 4.30
452 479 5.299279 AGAATTTGGTGTGCTAATATTCGGG 59.701 40.000 0.00 0.00 0.00 5.14
453 480 3.916359 TTGGTGTGCTAATATTCGGGA 57.084 42.857 0.00 0.00 0.00 5.14
454 481 4.431416 TTGGTGTGCTAATATTCGGGAT 57.569 40.909 0.00 0.00 0.00 3.85
455 482 4.431416 TGGTGTGCTAATATTCGGGATT 57.569 40.909 0.00 0.00 0.00 3.01
456 483 5.554437 TGGTGTGCTAATATTCGGGATTA 57.446 39.130 0.00 0.00 0.00 1.75
457 484 5.302360 TGGTGTGCTAATATTCGGGATTAC 58.698 41.667 0.00 0.00 0.00 1.89
458 485 5.163290 TGGTGTGCTAATATTCGGGATTACA 60.163 40.000 0.00 0.00 0.00 2.41
459 486 5.761234 GGTGTGCTAATATTCGGGATTACAA 59.239 40.000 0.00 0.00 0.00 2.41
460 487 6.073222 GGTGTGCTAATATTCGGGATTACAAG 60.073 42.308 0.00 0.00 0.00 3.16
461 488 6.482308 GTGTGCTAATATTCGGGATTACAAGT 59.518 38.462 0.00 0.00 0.00 3.16
462 489 7.012044 GTGTGCTAATATTCGGGATTACAAGTT 59.988 37.037 0.00 0.00 0.00 2.66
463 490 7.225931 TGTGCTAATATTCGGGATTACAAGTTC 59.774 37.037 0.00 0.00 0.00 3.01
464 491 7.225931 GTGCTAATATTCGGGATTACAAGTTCA 59.774 37.037 0.00 0.00 0.00 3.18
465 492 7.441157 TGCTAATATTCGGGATTACAAGTTCAG 59.559 37.037 0.00 0.00 0.00 3.02
466 493 7.095187 GCTAATATTCGGGATTACAAGTTCAGG 60.095 40.741 0.00 0.00 0.00 3.86
467 494 3.343941 TTCGGGATTACAAGTTCAGGG 57.656 47.619 0.00 0.00 0.00 4.45
468 495 2.262637 TCGGGATTACAAGTTCAGGGT 58.737 47.619 0.00 0.00 0.00 4.34
469 496 2.640826 TCGGGATTACAAGTTCAGGGTT 59.359 45.455 0.00 0.00 0.00 4.11
470 497 3.073356 TCGGGATTACAAGTTCAGGGTTT 59.927 43.478 0.00 0.00 0.00 3.27
471 498 3.190535 CGGGATTACAAGTTCAGGGTTTG 59.809 47.826 0.00 0.00 0.00 2.93
472 499 4.403734 GGGATTACAAGTTCAGGGTTTGA 58.596 43.478 0.00 0.00 0.00 2.69
473 500 5.016831 GGGATTACAAGTTCAGGGTTTGAT 58.983 41.667 0.00 0.00 35.27 2.57
474 501 5.480422 GGGATTACAAGTTCAGGGTTTGATT 59.520 40.000 0.00 0.00 35.27 2.57
475 502 6.014584 GGGATTACAAGTTCAGGGTTTGATTT 60.015 38.462 0.00 0.00 35.27 2.17
476 503 7.177744 GGGATTACAAGTTCAGGGTTTGATTTA 59.822 37.037 0.00 0.00 35.27 1.40
477 504 8.244113 GGATTACAAGTTCAGGGTTTGATTTAG 58.756 37.037 0.00 0.00 35.27 1.85
478 505 5.453567 ACAAGTTCAGGGTTTGATTTAGC 57.546 39.130 0.00 0.00 35.27 3.09
479 506 5.140454 ACAAGTTCAGGGTTTGATTTAGCT 58.860 37.500 0.00 0.00 35.27 3.32
480 507 5.598417 ACAAGTTCAGGGTTTGATTTAGCTT 59.402 36.000 0.00 0.00 35.27 3.74
481 508 6.098266 ACAAGTTCAGGGTTTGATTTAGCTTT 59.902 34.615 0.00 0.00 35.27 3.51
482 509 6.332735 AGTTCAGGGTTTGATTTAGCTTTC 57.667 37.500 0.00 0.00 35.27 2.62
483 510 5.243954 AGTTCAGGGTTTGATTTAGCTTTCC 59.756 40.000 0.00 0.00 35.27 3.13
484 511 4.998051 TCAGGGTTTGATTTAGCTTTCCT 58.002 39.130 0.00 0.00 0.00 3.36
485 512 5.010282 TCAGGGTTTGATTTAGCTTTCCTC 58.990 41.667 0.00 0.00 0.00 3.71
486 513 5.012893 CAGGGTTTGATTTAGCTTTCCTCT 58.987 41.667 0.00 0.00 0.00 3.69
487 514 6.012858 TCAGGGTTTGATTTAGCTTTCCTCTA 60.013 38.462 0.00 0.00 0.00 2.43
488 515 6.830838 CAGGGTTTGATTTAGCTTTCCTCTAT 59.169 38.462 0.00 0.00 0.00 1.98
489 516 7.993183 CAGGGTTTGATTTAGCTTTCCTCTATA 59.007 37.037 0.00 0.00 0.00 1.31
490 517 8.557450 AGGGTTTGATTTAGCTTTCCTCTATAA 58.443 33.333 0.00 0.00 0.00 0.98
491 518 8.841300 GGGTTTGATTTAGCTTTCCTCTATAAG 58.159 37.037 0.00 0.00 0.00 1.73
492 519 9.397280 GGTTTGATTTAGCTTTCCTCTATAAGT 57.603 33.333 0.00 0.00 0.00 2.24
498 525 9.620259 ATTTAGCTTTCCTCTATAAGTTCAAGG 57.380 33.333 0.00 0.00 0.00 3.61
499 526 6.628644 AGCTTTCCTCTATAAGTTCAAGGT 57.371 37.500 0.00 0.00 0.00 3.50
500 527 7.021998 AGCTTTCCTCTATAAGTTCAAGGTT 57.978 36.000 0.00 0.00 0.00 3.50
501 528 7.462590 AGCTTTCCTCTATAAGTTCAAGGTTT 58.537 34.615 0.00 0.00 0.00 3.27
502 529 8.603304 AGCTTTCCTCTATAAGTTCAAGGTTTA 58.397 33.333 0.00 0.00 0.00 2.01
503 530 9.397280 GCTTTCCTCTATAAGTTCAAGGTTTAT 57.603 33.333 0.00 0.00 0.00 1.40
536 563 1.268352 TCATTTCAAACCGGCCGAAAG 59.732 47.619 30.73 13.32 32.54 2.62
551 578 3.491792 GCCGAAAGAAACAAAACCATGGA 60.492 43.478 21.47 0.00 0.00 3.41
575 602 5.703978 TTTAAATCCATCTGTGTGTGTGG 57.296 39.130 0.00 0.00 0.00 4.17
576 603 3.507162 AAATCCATCTGTGTGTGTGGA 57.493 42.857 0.00 0.00 44.22 4.02
577 604 2.479566 ATCCATCTGTGTGTGTGGAC 57.520 50.000 0.00 0.00 43.02 4.02
578 605 0.033366 TCCATCTGTGTGTGTGGACG 59.967 55.000 0.00 0.00 35.91 4.79
579 606 0.950555 CCATCTGTGTGTGTGGACGG 60.951 60.000 0.00 0.00 33.53 4.79
580 607 0.950555 CATCTGTGTGTGTGGACGGG 60.951 60.000 0.00 0.00 0.00 5.28
581 608 2.731691 ATCTGTGTGTGTGGACGGGC 62.732 60.000 0.00 0.00 0.00 6.13
582 609 3.460672 CTGTGTGTGTGGACGGGCT 62.461 63.158 0.00 0.00 0.00 5.19
583 610 2.972505 GTGTGTGTGGACGGGCTG 60.973 66.667 0.00 0.00 0.00 4.85
584 611 4.927782 TGTGTGTGGACGGGCTGC 62.928 66.667 0.00 0.00 0.00 5.25
626 653 4.864334 CGGCCCCCACTCTGCATC 62.864 72.222 0.00 0.00 0.00 3.91
683 710 4.546829 ATGCCAACTCATCAAAGCATTT 57.453 36.364 0.00 0.00 37.68 2.32
699 727 1.067516 CATTTCCCCACATCAATCCGC 59.932 52.381 0.00 0.00 0.00 5.54
751 780 9.887189 GAAATAATACATGTATACAATCTCGCG 57.113 33.333 18.56 0.00 0.00 5.87
755 784 2.863401 TGTATACAATCTCGCGCTGT 57.137 45.000 5.56 4.98 0.00 4.40
758 787 2.135664 ATACAATCTCGCGCTGTACC 57.864 50.000 5.56 0.00 0.00 3.34
760 789 0.736325 ACAATCTCGCGCTGTACCAC 60.736 55.000 5.56 0.00 0.00 4.16
761 790 1.516386 AATCTCGCGCTGTACCACG 60.516 57.895 5.56 0.58 0.00 4.94
763 792 1.371337 ATCTCGCGCTGTACCACGTA 61.371 55.000 5.56 0.00 0.00 3.57
764 793 1.866496 CTCGCGCTGTACCACGTAC 60.866 63.158 5.56 0.00 39.24 3.67
765 794 2.126773 CGCGCTGTACCACGTACA 60.127 61.111 5.56 4.68 45.20 2.90
767 796 1.739093 CGCGCTGTACCACGTACATG 61.739 60.000 5.56 0.00 46.01 3.21
768 797 0.734942 GCGCTGTACCACGTACATGT 60.735 55.000 2.69 2.69 46.01 3.21
770 799 2.179589 CGCTGTACCACGTACATGTAC 58.820 52.381 23.53 23.53 46.01 2.90
772 801 3.671433 CGCTGTACCACGTACATGTACTT 60.671 47.826 28.53 19.78 46.01 2.24
773 802 4.437255 CGCTGTACCACGTACATGTACTTA 60.437 45.833 28.53 14.30 46.01 2.24
774 803 4.795278 GCTGTACCACGTACATGTACTTAC 59.205 45.833 28.53 22.40 46.01 2.34
777 806 7.072177 TGTACCACGTACATGTACTTACTAC 57.928 40.000 28.53 20.84 42.99 2.73
779 808 8.038351 TGTACCACGTACATGTACTTACTACTA 58.962 37.037 28.53 10.21 42.99 1.82
780 809 7.308782 ACCACGTACATGTACTTACTACTAC 57.691 40.000 28.53 6.26 34.04 2.73
781 810 6.316390 ACCACGTACATGTACTTACTACTACC 59.684 42.308 28.53 3.48 34.04 3.18
782 811 6.316140 CCACGTACATGTACTTACTACTACCA 59.684 42.308 28.53 0.00 34.04 3.25
783 812 7.182761 CACGTACATGTACTTACTACTACCAC 58.817 42.308 28.53 5.17 34.04 4.16
784 813 6.036083 ACGTACATGTACTTACTACTACCACG 59.964 42.308 28.53 17.60 34.04 4.94
785 814 5.824904 ACATGTACTTACTACTACCACGG 57.175 43.478 0.00 0.00 0.00 4.94
786 815 5.256474 ACATGTACTTACTACTACCACGGT 58.744 41.667 0.00 0.00 0.00 4.83
787 816 6.414732 ACATGTACTTACTACTACCACGGTA 58.585 40.000 0.00 0.00 0.00 4.02
788 817 6.316390 ACATGTACTTACTACTACCACGGTAC 59.684 42.308 0.00 0.00 0.00 3.34
807 836 2.281208 TGGTACGCCAGTTGTGCC 60.281 61.111 0.00 0.00 40.46 5.01
808 837 2.032071 GGTACGCCAGTTGTGCCT 59.968 61.111 0.00 0.00 38.84 4.75
810 839 1.017701 GGTACGCCAGTTGTGCCTAC 61.018 60.000 0.00 0.00 38.84 3.18
812 841 0.037697 TACGCCAGTTGTGCCTACAG 60.038 55.000 0.00 0.00 38.23 2.74
832 876 1.714794 CGAGCACAGGACGAAGAAAT 58.285 50.000 0.00 0.00 0.00 2.17
919 965 1.148273 TGCCGAGTTTGAACCAGCT 59.852 52.632 0.00 0.00 0.00 4.24
953 999 3.700350 CTCCTCCCCCTCCCCACT 61.700 72.222 0.00 0.00 0.00 4.00
968 1138 1.066573 CCCACTCACCTCAGTCATCAC 60.067 57.143 0.00 0.00 0.00 3.06
969 1139 1.066573 CCACTCACCTCAGTCATCACC 60.067 57.143 0.00 0.00 0.00 4.02
970 1140 0.891373 ACTCACCTCAGTCATCACCG 59.109 55.000 0.00 0.00 0.00 4.94
971 1141 1.177401 CTCACCTCAGTCATCACCGA 58.823 55.000 0.00 0.00 0.00 4.69
1019 1189 2.079158 CATCAGTCAACATTGCTCCGT 58.921 47.619 0.00 0.00 0.00 4.69
1020 1190 3.261580 CATCAGTCAACATTGCTCCGTA 58.738 45.455 0.00 0.00 0.00 4.02
1021 1191 2.959516 TCAGTCAACATTGCTCCGTAG 58.040 47.619 0.00 0.00 0.00 3.51
1022 1192 2.560981 TCAGTCAACATTGCTCCGTAGA 59.439 45.455 0.00 0.00 0.00 2.59
1023 1193 2.668457 CAGTCAACATTGCTCCGTAGAC 59.332 50.000 0.00 0.00 0.00 2.59
1024 1194 2.563179 AGTCAACATTGCTCCGTAGACT 59.437 45.455 0.00 0.00 0.00 3.24
1025 1195 2.668457 GTCAACATTGCTCCGTAGACTG 59.332 50.000 0.00 0.00 0.00 3.51
1026 1196 2.299013 TCAACATTGCTCCGTAGACTGT 59.701 45.455 0.00 0.00 0.00 3.55
1027 1197 3.508402 TCAACATTGCTCCGTAGACTGTA 59.492 43.478 0.00 0.00 0.00 2.74
1028 1198 4.159693 TCAACATTGCTCCGTAGACTGTAT 59.840 41.667 0.00 0.00 0.00 2.29
1029 1199 4.737855 ACATTGCTCCGTAGACTGTATT 57.262 40.909 0.00 0.00 0.00 1.89
1030 1200 5.847111 ACATTGCTCCGTAGACTGTATTA 57.153 39.130 0.00 0.00 0.00 0.98
1031 1201 5.833082 ACATTGCTCCGTAGACTGTATTAG 58.167 41.667 0.00 0.00 0.00 1.73
1032 1202 5.360144 ACATTGCTCCGTAGACTGTATTAGT 59.640 40.000 0.00 0.00 44.02 2.24
1033 1203 6.544931 ACATTGCTCCGTAGACTGTATTAGTA 59.455 38.462 0.00 0.00 40.53 1.82
1034 1204 5.998454 TGCTCCGTAGACTGTATTAGTAC 57.002 43.478 0.00 0.00 40.53 2.73
1265 1467 1.745264 CTTCTCTCCCGCAGATCCC 59.255 63.158 0.00 0.00 0.00 3.85
1266 1468 2.081425 CTTCTCTCCCGCAGATCCCG 62.081 65.000 0.00 0.00 0.00 5.14
1267 1469 4.292178 CTCTCCCGCAGATCCCGC 62.292 72.222 0.00 0.00 0.00 6.13
1268 1470 4.841617 TCTCCCGCAGATCCCGCT 62.842 66.667 3.48 0.00 0.00 5.52
1269 1471 4.292178 CTCCCGCAGATCCCGCTC 62.292 72.222 3.48 0.00 0.00 5.03
1275 1477 3.854669 CAGATCCCGCTCGCCCTT 61.855 66.667 0.00 0.00 0.00 3.95
1276 1478 3.541713 AGATCCCGCTCGCCCTTC 61.542 66.667 0.00 0.00 0.00 3.46
1277 1479 3.541713 GATCCCGCTCGCCCTTCT 61.542 66.667 0.00 0.00 0.00 2.85
1278 1480 3.507597 GATCCCGCTCGCCCTTCTC 62.508 68.421 0.00 0.00 0.00 2.87
1279 1481 4.761058 TCCCGCTCGCCCTTCTCT 62.761 66.667 0.00 0.00 0.00 3.10
1280 1482 4.214327 CCCGCTCGCCCTTCTCTC 62.214 72.222 0.00 0.00 0.00 3.20
1281 1483 4.214327 CCGCTCGCCCTTCTCTCC 62.214 72.222 0.00 0.00 0.00 3.71
1282 1484 3.144193 CGCTCGCCCTTCTCTCCT 61.144 66.667 0.00 0.00 0.00 3.69
1283 1485 2.811799 GCTCGCCCTTCTCTCCTC 59.188 66.667 0.00 0.00 0.00 3.71
1287 1489 3.157949 GCCCTTCTCTCCTCCCCG 61.158 72.222 0.00 0.00 0.00 5.73
1292 1501 1.681486 CTTCTCTCCTCCCCGCTTCC 61.681 65.000 0.00 0.00 0.00 3.46
1323 1532 2.538861 CGTGTGTCATGATCTGATCTGC 59.461 50.000 17.82 10.21 35.97 4.26
1584 2385 4.757657 TGCGCCAGTAAGAAGAATTTTACA 59.242 37.500 4.18 0.00 33.30 2.41
1585 2386 5.414454 TGCGCCAGTAAGAAGAATTTTACAT 59.586 36.000 4.18 0.00 33.30 2.29
1621 2436 4.556233 CACATGGTTCTAAGTTCTGACGA 58.444 43.478 0.00 0.00 0.00 4.20
1646 3074 1.303309 GGATGGATGCTTGGTCTTCG 58.697 55.000 0.00 0.00 0.00 3.79
1731 3160 2.031333 CAGGAAGAAGCACAACAAGCTC 60.031 50.000 0.00 0.00 42.53 4.09
1767 3196 2.364186 TGGGATCTGCAGCTCGGA 60.364 61.111 9.47 0.00 33.95 4.55
1770 3199 0.179034 GGGATCTGCAGCTCGGAATT 60.179 55.000 9.47 0.00 32.98 2.17
1933 3507 2.066262 TCGCCGACATGAAGAAGAAAC 58.934 47.619 0.00 0.00 0.00 2.78
2058 3633 1.661112 GGTATGCGCTTGTCAGAGAAC 59.339 52.381 9.73 0.00 0.00 3.01
2059 3634 2.611518 GTATGCGCTTGTCAGAGAACT 58.388 47.619 9.73 0.00 0.00 3.01
2060 3635 2.175878 ATGCGCTTGTCAGAGAACTT 57.824 45.000 9.73 0.00 0.00 2.66
2061 3636 2.812358 TGCGCTTGTCAGAGAACTTA 57.188 45.000 9.73 0.00 0.00 2.24
2062 3637 2.404215 TGCGCTTGTCAGAGAACTTAC 58.596 47.619 9.73 0.00 0.00 2.34
2065 3640 4.235360 GCGCTTGTCAGAGAACTTACTTA 58.765 43.478 0.00 0.00 0.00 2.24
2069 3644 6.586463 CGCTTGTCAGAGAACTTACTTATTGA 59.414 38.462 0.00 0.00 0.00 2.57
2097 3672 4.647424 TTCCTCGTTTTTGCAACATCTT 57.353 36.364 0.00 0.00 0.00 2.40
2117 3696 7.988028 ACATCTTCATATGAGCTATGGATGATG 59.012 37.037 22.29 16.71 38.00 3.07
2118 3697 6.346896 TCTTCATATGAGCTATGGATGATGC 58.653 40.000 5.39 0.00 38.23 3.91
2119 3698 5.952347 TCATATGAGCTATGGATGATGCT 57.048 39.130 0.00 0.00 38.23 3.79
2296 3878 1.733402 CTAGGGACTCGCTGAGGCAG 61.733 65.000 12.43 0.00 39.95 4.85
2299 3881 2.493973 GACTCGCTGAGGCAGAGG 59.506 66.667 6.55 0.00 37.69 3.69
2344 3926 2.298446 TGAGCTCACTGAACTGGAGAAG 59.702 50.000 13.74 0.00 0.00 2.85
2351 3933 1.219393 GAACTGGAGAAGGAGGCGG 59.781 63.158 0.00 0.00 0.00 6.13
2353 3935 4.521062 CTGGAGAAGGAGGCGGCG 62.521 72.222 0.51 0.51 0.00 6.46
2410 3992 2.935481 CAGGACCTGGAGGCCCAA 60.935 66.667 14.26 0.00 40.62 4.12
2431 4013 4.514577 ATCAAGAGGCGTCGGCGG 62.515 66.667 13.05 4.93 41.24 6.13
2520 4105 0.391130 GACGCCATGCACCAGTAAGA 60.391 55.000 0.00 0.00 0.00 2.10
2544 4129 8.938883 AGAATGATCCTATAAAACCAAGAGCTA 58.061 33.333 0.00 0.00 0.00 3.32
2628 4216 3.560068 GGAGTGTTGTGTACAAGGAACAG 59.440 47.826 13.80 0.00 38.80 3.16
2736 4324 1.605457 CGCAAGAAGTACCAGCACAGA 60.605 52.381 0.00 0.00 43.02 3.41
2883 4471 0.250901 GCAGCCCTCTGAAACAGGAA 60.251 55.000 0.00 0.00 42.95 3.36
3039 4627 1.065126 CCAAGAAGGTCCATCTCCACC 60.065 57.143 0.00 0.00 0.00 4.61
3050 4638 3.054434 TCCATCTCCACCGATGAAAACAT 60.054 43.478 2.57 0.00 42.63 2.71
3087 4675 1.549170 GGAAGAGCGTCAGTAAGGGAA 59.451 52.381 0.00 0.00 0.00 3.97
3122 4710 2.801421 GATCAGAGAGCGGCGTCA 59.199 61.111 9.37 0.00 0.00 4.35
3155 4743 2.291217 GGGAAAGAAAGGAGAGCATGGT 60.291 50.000 0.00 0.00 0.00 3.55
3156 4744 3.013219 GGAAAGAAAGGAGAGCATGGTC 58.987 50.000 17.19 17.19 0.00 4.02
3306 4894 3.643320 CACCAAGTCCTCCATATAGAGCA 59.357 47.826 0.00 0.00 32.17 4.26
3438 5026 2.024176 TGAACTACAGAGGCAAGGGA 57.976 50.000 0.00 0.00 0.00 4.20
3456 5044 3.010584 AGGGACATGTTGATAAGTGGCTT 59.989 43.478 0.00 0.00 0.00 4.35
3549 5137 1.807886 CGAGGAGAACGGTTCGGAT 59.192 57.895 14.70 5.02 34.02 4.18
3578 5166 4.035675 GCAGGAAATCCAAAGTAGAATCGG 59.964 45.833 1.67 0.00 38.89 4.18
3647 5235 2.738846 AGATCACTGAATGTGTTGACGC 59.261 45.455 0.00 0.00 46.27 5.19
3670 5258 1.663702 GTCGACGTTGGTGGTGAGG 60.664 63.158 0.00 0.00 0.00 3.86
3671 5259 1.829096 TCGACGTTGGTGGTGAGGA 60.829 57.895 2.20 0.00 0.00 3.71
3762 5350 1.038130 AGATCTGGTTCCCGAGGTCG 61.038 60.000 0.00 0.00 39.44 4.79
4232 5844 2.103373 TCTGTGAGTGAGGCATAGTCC 58.897 52.381 0.00 0.00 0.00 3.85
4247 5866 0.959553 AGTCCGAAGCTCTGTTTCGA 59.040 50.000 15.83 2.58 46.16 3.71
4292 5911 8.599774 GTCAGTAATCTCTGAAACATTTCTAGC 58.400 37.037 5.97 0.00 44.48 3.42
4319 5938 1.404391 CCTGCAGCAATCAGATTGGAC 59.596 52.381 22.25 8.62 40.57 4.02
4322 5941 2.490509 TGCAGCAATCAGATTGGACTTG 59.509 45.455 22.25 9.36 40.57 3.16
4323 5942 2.490903 GCAGCAATCAGATTGGACTTGT 59.509 45.455 22.25 0.00 40.57 3.16
4324 5943 3.691118 GCAGCAATCAGATTGGACTTGTA 59.309 43.478 22.25 0.00 40.57 2.41
4326 5945 5.335897 GCAGCAATCAGATTGGACTTGTAAA 60.336 40.000 22.25 0.00 40.57 2.01
4327 5946 6.088824 CAGCAATCAGATTGGACTTGTAAAC 58.911 40.000 22.25 4.10 40.57 2.01
4328 5947 5.769662 AGCAATCAGATTGGACTTGTAAACA 59.230 36.000 22.25 0.00 40.57 2.83
4329 5948 6.435277 AGCAATCAGATTGGACTTGTAAACAT 59.565 34.615 22.25 0.00 40.57 2.71
4330 5949 7.039504 AGCAATCAGATTGGACTTGTAAACATT 60.040 33.333 22.25 0.00 40.57 2.71
4331 5950 8.243426 GCAATCAGATTGGACTTGTAAACATTA 58.757 33.333 22.25 0.00 40.57 1.90
4332 5951 9.559958 CAATCAGATTGGACTTGTAAACATTAC 57.440 33.333 14.64 0.00 36.63 1.89
4333 5952 7.681939 TCAGATTGGACTTGTAAACATTACC 57.318 36.000 0.00 0.00 0.00 2.85
4334 5953 7.227873 TCAGATTGGACTTGTAAACATTACCA 58.772 34.615 0.00 0.00 0.00 3.25
4335 5954 7.174253 TCAGATTGGACTTGTAAACATTACCAC 59.826 37.037 0.00 0.00 0.00 4.16
4336 5955 7.001674 AGATTGGACTTGTAAACATTACCACA 58.998 34.615 0.00 0.00 0.00 4.17
4337 5956 6.627395 TTGGACTTGTAAACATTACCACAG 57.373 37.500 0.00 0.00 0.00 3.66
4464 6130 9.061435 CAAAGGAGAGACAAATTAAGAAGAACT 57.939 33.333 0.00 0.00 0.00 3.01
4467 6133 8.655901 AGGAGAGACAAATTAAGAAGAACTCTT 58.344 33.333 0.00 0.00 46.52 2.85
4486 6164 1.226295 GTAAACATTGAGCGCCGCC 60.226 57.895 4.98 0.00 0.00 6.13
4802 6517 0.395686 GCCTGATGAGAGCTGCCATA 59.604 55.000 0.00 0.00 0.00 2.74
4815 6530 2.164422 GCTGCCATAGGAGTTGGAAAAC 59.836 50.000 0.00 0.00 36.26 2.43
4817 6532 1.132453 GCCATAGGAGTTGGAAAACGC 59.868 52.381 0.00 0.00 36.26 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 95 7.294017 AGGATGCAATTGATCCGATATTTTT 57.706 32.000 21.28 7.64 43.78 1.94
94 96 6.906157 AGGATGCAATTGATCCGATATTTT 57.094 33.333 21.28 8.12 43.78 1.82
95 97 6.491062 TGAAGGATGCAATTGATCCGATATTT 59.509 34.615 21.28 14.35 43.78 1.40
96 98 6.005823 TGAAGGATGCAATTGATCCGATATT 58.994 36.000 21.28 14.58 43.78 1.28
97 99 5.563592 TGAAGGATGCAATTGATCCGATAT 58.436 37.500 21.28 13.88 43.78 1.63
101 103 2.947652 ACTGAAGGATGCAATTGATCCG 59.052 45.455 21.28 14.21 43.78 4.18
102 104 4.679662 CAACTGAAGGATGCAATTGATCC 58.320 43.478 20.55 20.55 39.94 3.36
145 166 3.508793 TCAAACTAGTAACCTCGGGAGTG 59.491 47.826 0.00 0.00 0.00 3.51
149 170 4.161754 AGGATTCAAACTAGTAACCTCGGG 59.838 45.833 0.00 0.00 0.00 5.14
152 173 6.698380 TGACAGGATTCAAACTAGTAACCTC 58.302 40.000 0.00 0.00 0.00 3.85
155 176 5.351740 GCCTGACAGGATTCAAACTAGTAAC 59.648 44.000 26.25 0.00 37.67 2.50
165 189 2.885135 AATGTGCCTGACAGGATTCA 57.115 45.000 26.25 18.58 37.67 2.57
177 204 3.160777 ACTAGCAGTACGTAATGTGCC 57.839 47.619 22.51 7.81 36.54 5.01
211 238 3.703001 ACCCACTTGTCTTGTATCAGG 57.297 47.619 0.00 0.00 0.00 3.86
212 239 3.679980 CGAACCCACTTGTCTTGTATCAG 59.320 47.826 0.00 0.00 0.00 2.90
214 241 2.415512 GCGAACCCACTTGTCTTGTATC 59.584 50.000 0.00 0.00 0.00 2.24
215 242 2.224426 TGCGAACCCACTTGTCTTGTAT 60.224 45.455 0.00 0.00 0.00 2.29
217 244 0.107410 TGCGAACCCACTTGTCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
218 245 0.588252 CTGCGAACCCACTTGTCTTG 59.412 55.000 0.00 0.00 0.00 3.02
219 246 0.468226 TCTGCGAACCCACTTGTCTT 59.532 50.000 0.00 0.00 0.00 3.01
220 247 0.468226 TTCTGCGAACCCACTTGTCT 59.532 50.000 0.00 0.00 0.00 3.41
221 248 1.305201 TTTCTGCGAACCCACTTGTC 58.695 50.000 0.00 0.00 0.00 3.18
222 249 1.404035 GTTTTCTGCGAACCCACTTGT 59.596 47.619 0.00 0.00 0.00 3.16
223 250 1.596954 CGTTTTCTGCGAACCCACTTG 60.597 52.381 0.00 0.00 0.00 3.16
226 253 0.658897 TTCGTTTTCTGCGAACCCAC 59.341 50.000 0.00 0.00 42.41 4.61
228 255 2.478547 TTTTCGTTTTCTGCGAACCC 57.521 45.000 0.00 0.00 46.12 4.11
229 256 4.039032 TCATTTTTCGTTTTCTGCGAACC 58.961 39.130 0.00 0.00 46.12 3.62
230 257 5.613964 TTCATTTTTCGTTTTCTGCGAAC 57.386 34.783 0.00 0.00 46.12 3.95
232 259 6.089551 TGTTTTTCATTTTTCGTTTTCTGCGA 59.910 30.769 0.00 0.00 36.51 5.10
233 260 6.237073 TGTTTTTCATTTTTCGTTTTCTGCG 58.763 32.000 0.00 0.00 0.00 5.18
234 261 7.452231 TCTGTTTTTCATTTTTCGTTTTCTGC 58.548 30.769 0.00 0.00 0.00 4.26
235 262 9.249844 GTTCTGTTTTTCATTTTTCGTTTTCTG 57.750 29.630 0.00 0.00 0.00 3.02
236 263 8.983724 TGTTCTGTTTTTCATTTTTCGTTTTCT 58.016 25.926 0.00 0.00 0.00 2.52
238 265 8.983724 TCTGTTCTGTTTTTCATTTTTCGTTTT 58.016 25.926 0.00 0.00 0.00 2.43
239 266 8.527567 TCTGTTCTGTTTTTCATTTTTCGTTT 57.472 26.923 0.00 0.00 0.00 3.60
240 267 7.201435 GCTCTGTTCTGTTTTTCATTTTTCGTT 60.201 33.333 0.00 0.00 0.00 3.85
242 269 6.558433 CGCTCTGTTCTGTTTTTCATTTTTCG 60.558 38.462 0.00 0.00 0.00 3.46
243 270 6.472163 TCGCTCTGTTCTGTTTTTCATTTTTC 59.528 34.615 0.00 0.00 0.00 2.29
245 272 5.890334 TCGCTCTGTTCTGTTTTTCATTTT 58.110 33.333 0.00 0.00 0.00 1.82
246 273 5.066505 ACTCGCTCTGTTCTGTTTTTCATTT 59.933 36.000 0.00 0.00 0.00 2.32
247 274 4.576463 ACTCGCTCTGTTCTGTTTTTCATT 59.424 37.500 0.00 0.00 0.00 2.57
248 275 4.024556 CACTCGCTCTGTTCTGTTTTTCAT 60.025 41.667 0.00 0.00 0.00 2.57
249 276 3.309682 CACTCGCTCTGTTCTGTTTTTCA 59.690 43.478 0.00 0.00 0.00 2.69
250 277 3.846383 GCACTCGCTCTGTTCTGTTTTTC 60.846 47.826 0.00 0.00 34.30 2.29
252 279 1.599542 GCACTCGCTCTGTTCTGTTTT 59.400 47.619 0.00 0.00 34.30 2.43
253 280 1.221414 GCACTCGCTCTGTTCTGTTT 58.779 50.000 0.00 0.00 34.30 2.83
254 281 0.601311 GGCACTCGCTCTGTTCTGTT 60.601 55.000 0.00 0.00 38.60 3.16
255 282 1.005630 GGCACTCGCTCTGTTCTGT 60.006 57.895 0.00 0.00 38.60 3.41
256 283 1.739562 GGGCACTCGCTCTGTTCTG 60.740 63.158 0.00 0.00 34.90 3.02
257 284 1.758440 TTGGGCACTCGCTCTGTTCT 61.758 55.000 0.00 0.00 40.38 3.01
259 286 1.302033 CTTGGGCACTCGCTCTGTT 60.302 57.895 0.00 0.00 40.38 3.16
261 288 3.123620 GCTTGGGCACTCGCTCTG 61.124 66.667 0.00 0.00 40.38 3.35
262 289 3.630013 TGCTTGGGCACTCGCTCT 61.630 61.111 1.95 0.00 44.28 4.09
282 309 2.359850 GTCCAGCCCATCAACGCA 60.360 61.111 0.00 0.00 0.00 5.24
283 310 3.134127 GGTCCAGCCCATCAACGC 61.134 66.667 0.00 0.00 0.00 4.84
284 311 2.593468 ATCGGTCCAGCCCATCAACG 62.593 60.000 0.00 0.00 0.00 4.10
288 315 2.427506 GATAAATCGGTCCAGCCCATC 58.572 52.381 0.00 0.00 0.00 3.51
290 317 0.472471 GGATAAATCGGTCCAGCCCA 59.528 55.000 0.00 0.00 34.57 5.36
291 318 0.765510 AGGATAAATCGGTCCAGCCC 59.234 55.000 0.00 0.00 36.96 5.19
293 320 5.394333 GGATACTAGGATAAATCGGTCCAGC 60.394 48.000 0.00 0.00 36.96 4.85
294 321 5.715279 TGGATACTAGGATAAATCGGTCCAG 59.285 44.000 0.00 0.00 35.43 3.86
295 322 5.647230 TGGATACTAGGATAAATCGGTCCA 58.353 41.667 0.00 0.00 35.43 4.02
296 323 5.715753 ACTGGATACTAGGATAAATCGGTCC 59.284 44.000 0.00 0.00 37.61 4.46
297 324 6.433404 TGACTGGATACTAGGATAAATCGGTC 59.567 42.308 10.04 10.04 37.61 4.79
298 325 6.312529 TGACTGGATACTAGGATAAATCGGT 58.687 40.000 0.00 0.00 37.61 4.69
299 326 6.434652 ACTGACTGGATACTAGGATAAATCGG 59.565 42.308 0.00 0.00 37.61 4.18
300 327 7.175119 TGACTGACTGGATACTAGGATAAATCG 59.825 40.741 0.00 0.00 37.61 3.34
301 328 8.410673 TGACTGACTGGATACTAGGATAAATC 57.589 38.462 0.00 0.00 37.61 2.17
302 329 8.783660 TTGACTGACTGGATACTAGGATAAAT 57.216 34.615 0.00 0.00 37.61 1.40
303 330 7.839705 ACTTGACTGACTGGATACTAGGATAAA 59.160 37.037 0.00 0.00 37.61 1.40
305 332 6.912426 ACTTGACTGACTGGATACTAGGATA 58.088 40.000 0.00 0.00 37.61 2.59
306 333 5.772004 ACTTGACTGACTGGATACTAGGAT 58.228 41.667 0.00 0.00 37.61 3.24
308 335 5.009210 GCTACTTGACTGACTGGATACTAGG 59.991 48.000 0.00 0.00 37.61 3.02
309 336 5.825679 AGCTACTTGACTGACTGGATACTAG 59.174 44.000 0.00 0.00 37.61 2.57
310 337 5.756918 AGCTACTTGACTGACTGGATACTA 58.243 41.667 0.00 0.00 37.61 1.82
311 338 4.605183 AGCTACTTGACTGACTGGATACT 58.395 43.478 0.00 0.00 37.61 2.12
312 339 4.993029 AGCTACTTGACTGACTGGATAC 57.007 45.455 0.00 0.00 0.00 2.24
314 341 4.899352 AAAGCTACTTGACTGACTGGAT 57.101 40.909 0.00 0.00 0.00 3.41
316 343 5.059833 AGAAAAAGCTACTTGACTGACTGG 58.940 41.667 0.00 0.00 0.00 4.00
317 344 5.755375 TGAGAAAAAGCTACTTGACTGACTG 59.245 40.000 0.00 0.00 0.00 3.51
318 345 5.918608 TGAGAAAAAGCTACTTGACTGACT 58.081 37.500 0.00 0.00 0.00 3.41
319 346 6.604735 TTGAGAAAAAGCTACTTGACTGAC 57.395 37.500 0.00 0.00 0.00 3.51
320 347 7.624360 TTTTGAGAAAAAGCTACTTGACTGA 57.376 32.000 0.00 0.00 0.00 3.41
349 376 6.294176 GCAAGGATACATGACTGACTTGTTTT 60.294 38.462 0.00 0.00 37.52 2.43
351 378 4.697352 GCAAGGATACATGACTGACTTGTT 59.303 41.667 0.00 0.00 37.52 2.83
352 379 4.256920 GCAAGGATACATGACTGACTTGT 58.743 43.478 0.00 4.38 37.52 3.16
353 380 3.624861 GGCAAGGATACATGACTGACTTG 59.375 47.826 0.00 8.42 41.16 3.16
355 382 2.840038 TGGCAAGGATACATGACTGACT 59.160 45.455 0.00 0.00 45.85 3.41
356 383 2.939103 GTGGCAAGGATACATGACTGAC 59.061 50.000 0.00 0.00 45.85 3.51
361 388 3.812262 CTGATGTGGCAAGGATACATGA 58.188 45.455 0.00 0.00 37.52 3.07
362 389 2.292569 GCTGATGTGGCAAGGATACATG 59.707 50.000 0.00 0.00 35.35 3.21
363 390 2.579873 GCTGATGTGGCAAGGATACAT 58.420 47.619 0.00 0.00 37.72 2.29
364 391 1.743431 CGCTGATGTGGCAAGGATACA 60.743 52.381 0.00 0.00 41.41 2.29
366 393 0.829990 TCGCTGATGTGGCAAGGATA 59.170 50.000 0.00 0.00 0.00 2.59
367 394 0.463295 CTCGCTGATGTGGCAAGGAT 60.463 55.000 0.00 0.00 0.00 3.24
368 395 1.078918 CTCGCTGATGTGGCAAGGA 60.079 57.895 0.00 0.00 0.00 3.36
370 397 1.945387 ATACTCGCTGATGTGGCAAG 58.055 50.000 0.00 0.00 0.00 4.01
371 398 2.803133 GCTATACTCGCTGATGTGGCAA 60.803 50.000 0.00 0.00 0.00 4.52
373 400 1.269778 TGCTATACTCGCTGATGTGGC 60.270 52.381 0.00 0.00 0.00 5.01
374 401 2.670479 CTGCTATACTCGCTGATGTGG 58.330 52.381 0.00 0.00 0.00 4.17
375 402 2.057316 GCTGCTATACTCGCTGATGTG 58.943 52.381 0.00 0.00 0.00 3.21
378 405 4.038042 TGTTTAGCTGCTATACTCGCTGAT 59.962 41.667 24.05 0.00 34.14 2.90
379 406 3.380320 TGTTTAGCTGCTATACTCGCTGA 59.620 43.478 24.05 6.69 34.14 4.26
381 408 3.491104 GGTGTTTAGCTGCTATACTCGCT 60.491 47.826 24.05 0.00 36.56 4.93
382 409 2.795470 GGTGTTTAGCTGCTATACTCGC 59.205 50.000 24.05 16.20 0.00 5.03
383 410 3.068307 AGGGTGTTTAGCTGCTATACTCG 59.932 47.826 24.05 0.00 0.00 4.18
384 411 4.099573 TGAGGGTGTTTAGCTGCTATACTC 59.900 45.833 24.05 20.98 0.00 2.59
385 412 4.030913 TGAGGGTGTTTAGCTGCTATACT 58.969 43.478 24.05 9.66 0.00 2.12
386 413 4.402056 TGAGGGTGTTTAGCTGCTATAC 57.598 45.455 19.28 19.28 0.00 1.47
388 415 3.519510 TCTTGAGGGTGTTTAGCTGCTAT 59.480 43.478 10.64 0.00 0.00 2.97
389 416 2.903784 TCTTGAGGGTGTTTAGCTGCTA 59.096 45.455 5.02 5.02 0.00 3.49
390 417 1.699634 TCTTGAGGGTGTTTAGCTGCT 59.300 47.619 7.57 7.57 0.00 4.24
391 418 2.185004 TCTTGAGGGTGTTTAGCTGC 57.815 50.000 0.00 0.00 0.00 5.25
392 419 5.712152 ATTTTCTTGAGGGTGTTTAGCTG 57.288 39.130 0.00 0.00 0.00 4.24
393 420 6.655425 GTCTATTTTCTTGAGGGTGTTTAGCT 59.345 38.462 0.00 0.00 0.00 3.32
394 421 6.127980 GGTCTATTTTCTTGAGGGTGTTTAGC 60.128 42.308 0.00 0.00 0.00 3.09
395 422 6.092259 CGGTCTATTTTCTTGAGGGTGTTTAG 59.908 42.308 0.00 0.00 0.00 1.85
396 423 5.935789 CGGTCTATTTTCTTGAGGGTGTTTA 59.064 40.000 0.00 0.00 0.00 2.01
397 424 4.760204 CGGTCTATTTTCTTGAGGGTGTTT 59.240 41.667 0.00 0.00 0.00 2.83
398 425 4.324267 CGGTCTATTTTCTTGAGGGTGTT 58.676 43.478 0.00 0.00 0.00 3.32
399 426 3.307480 CCGGTCTATTTTCTTGAGGGTGT 60.307 47.826 0.00 0.00 0.00 4.16
400 427 3.270877 CCGGTCTATTTTCTTGAGGGTG 58.729 50.000 0.00 0.00 0.00 4.61
401 428 2.238898 CCCGGTCTATTTTCTTGAGGGT 59.761 50.000 0.00 0.00 0.00 4.34
402 429 2.504175 TCCCGGTCTATTTTCTTGAGGG 59.496 50.000 0.00 0.00 37.72 4.30
403 430 3.798202 CTCCCGGTCTATTTTCTTGAGG 58.202 50.000 0.00 0.00 0.00 3.86
404 431 3.198872 GCTCCCGGTCTATTTTCTTGAG 58.801 50.000 0.00 0.00 0.00 3.02
405 432 2.418197 CGCTCCCGGTCTATTTTCTTGA 60.418 50.000 0.00 0.00 0.00 3.02
406 433 1.933853 CGCTCCCGGTCTATTTTCTTG 59.066 52.381 0.00 0.00 0.00 3.02
407 434 2.311124 CGCTCCCGGTCTATTTTCTT 57.689 50.000 0.00 0.00 0.00 2.52
419 446 1.078426 ACCAAATTCTCCGCTCCCG 60.078 57.895 0.00 0.00 0.00 5.14
420 447 0.322546 ACACCAAATTCTCCGCTCCC 60.323 55.000 0.00 0.00 0.00 4.30
421 448 0.804989 CACACCAAATTCTCCGCTCC 59.195 55.000 0.00 0.00 0.00 4.70
422 449 0.169009 GCACACCAAATTCTCCGCTC 59.831 55.000 0.00 0.00 0.00 5.03
423 450 0.250901 AGCACACCAAATTCTCCGCT 60.251 50.000 0.00 0.00 0.00 5.52
424 451 1.448985 TAGCACACCAAATTCTCCGC 58.551 50.000 0.00 0.00 0.00 5.54
425 452 6.377327 AATATTAGCACACCAAATTCTCCG 57.623 37.500 0.00 0.00 0.00 4.63
426 453 6.430451 CGAATATTAGCACACCAAATTCTCC 58.570 40.000 0.00 0.00 0.00 3.71
427 454 6.430451 CCGAATATTAGCACACCAAATTCTC 58.570 40.000 0.00 0.00 0.00 2.87
428 455 5.299279 CCCGAATATTAGCACACCAAATTCT 59.701 40.000 0.00 0.00 0.00 2.40
429 456 5.298276 TCCCGAATATTAGCACACCAAATTC 59.702 40.000 0.00 0.00 0.00 2.17
430 457 5.197451 TCCCGAATATTAGCACACCAAATT 58.803 37.500 0.00 0.00 0.00 1.82
431 458 4.787551 TCCCGAATATTAGCACACCAAAT 58.212 39.130 0.00 0.00 0.00 2.32
432 459 4.223556 TCCCGAATATTAGCACACCAAA 57.776 40.909 0.00 0.00 0.00 3.28
433 460 3.916359 TCCCGAATATTAGCACACCAA 57.084 42.857 0.00 0.00 0.00 3.67
434 461 4.431416 AATCCCGAATATTAGCACACCA 57.569 40.909 0.00 0.00 0.00 4.17
435 462 5.302360 TGTAATCCCGAATATTAGCACACC 58.698 41.667 0.00 0.00 0.00 4.16
436 463 6.482308 ACTTGTAATCCCGAATATTAGCACAC 59.518 38.462 0.00 0.00 0.00 3.82
437 464 6.588204 ACTTGTAATCCCGAATATTAGCACA 58.412 36.000 0.00 0.00 0.00 4.57
438 465 7.225931 TGAACTTGTAATCCCGAATATTAGCAC 59.774 37.037 0.00 0.00 0.00 4.40
439 466 7.276658 TGAACTTGTAATCCCGAATATTAGCA 58.723 34.615 0.00 0.00 0.00 3.49
440 467 7.095187 CCTGAACTTGTAATCCCGAATATTAGC 60.095 40.741 0.00 0.00 0.00 3.09
441 468 7.387948 CCCTGAACTTGTAATCCCGAATATTAG 59.612 40.741 0.00 0.00 0.00 1.73
442 469 7.147444 ACCCTGAACTTGTAATCCCGAATATTA 60.147 37.037 0.00 0.00 0.00 0.98
443 470 6.062095 CCCTGAACTTGTAATCCCGAATATT 58.938 40.000 0.00 0.00 0.00 1.28
444 471 5.132144 ACCCTGAACTTGTAATCCCGAATAT 59.868 40.000 0.00 0.00 0.00 1.28
445 472 4.472108 ACCCTGAACTTGTAATCCCGAATA 59.528 41.667 0.00 0.00 0.00 1.75
446 473 3.265995 ACCCTGAACTTGTAATCCCGAAT 59.734 43.478 0.00 0.00 0.00 3.34
447 474 2.640826 ACCCTGAACTTGTAATCCCGAA 59.359 45.455 0.00 0.00 0.00 4.30
448 475 2.262637 ACCCTGAACTTGTAATCCCGA 58.737 47.619 0.00 0.00 0.00 5.14
449 476 2.781681 ACCCTGAACTTGTAATCCCG 57.218 50.000 0.00 0.00 0.00 5.14
450 477 4.403734 TCAAACCCTGAACTTGTAATCCC 58.596 43.478 0.00 0.00 0.00 3.85
451 478 6.590234 AATCAAACCCTGAACTTGTAATCC 57.410 37.500 0.00 0.00 37.67 3.01
452 479 7.755373 GCTAAATCAAACCCTGAACTTGTAATC 59.245 37.037 0.00 0.00 37.67 1.75
453 480 7.451566 AGCTAAATCAAACCCTGAACTTGTAAT 59.548 33.333 0.00 0.00 37.67 1.89
454 481 6.775629 AGCTAAATCAAACCCTGAACTTGTAA 59.224 34.615 0.00 0.00 37.67 2.41
455 482 6.303839 AGCTAAATCAAACCCTGAACTTGTA 58.696 36.000 0.00 0.00 37.67 2.41
456 483 5.140454 AGCTAAATCAAACCCTGAACTTGT 58.860 37.500 0.00 0.00 37.67 3.16
457 484 5.712152 AGCTAAATCAAACCCTGAACTTG 57.288 39.130 0.00 0.00 37.67 3.16
458 485 6.239317 GGAAAGCTAAATCAAACCCTGAACTT 60.239 38.462 0.00 0.00 37.67 2.66
459 486 5.243954 GGAAAGCTAAATCAAACCCTGAACT 59.756 40.000 0.00 0.00 37.67 3.01
460 487 5.243954 AGGAAAGCTAAATCAAACCCTGAAC 59.756 40.000 0.00 0.00 37.67 3.18
461 488 5.393866 AGGAAAGCTAAATCAAACCCTGAA 58.606 37.500 0.00 0.00 37.67 3.02
462 489 4.998051 AGGAAAGCTAAATCAAACCCTGA 58.002 39.130 0.00 0.00 38.81 3.86
463 490 5.012893 AGAGGAAAGCTAAATCAAACCCTG 58.987 41.667 0.00 0.00 0.00 4.45
464 491 5.262455 AGAGGAAAGCTAAATCAAACCCT 57.738 39.130 0.00 0.00 0.00 4.34
465 492 8.747538 TTATAGAGGAAAGCTAAATCAAACCC 57.252 34.615 0.00 0.00 0.00 4.11
466 493 9.397280 ACTTATAGAGGAAAGCTAAATCAAACC 57.603 33.333 0.00 0.00 0.00 3.27
472 499 9.620259 CCTTGAACTTATAGAGGAAAGCTAAAT 57.380 33.333 0.00 0.00 0.00 1.40
473 500 8.603304 ACCTTGAACTTATAGAGGAAAGCTAAA 58.397 33.333 0.00 0.00 0.00 1.85
474 501 8.147244 ACCTTGAACTTATAGAGGAAAGCTAA 57.853 34.615 0.00 0.00 0.00 3.09
475 502 7.735326 ACCTTGAACTTATAGAGGAAAGCTA 57.265 36.000 0.00 0.00 0.00 3.32
476 503 6.628644 ACCTTGAACTTATAGAGGAAAGCT 57.371 37.500 0.00 0.00 0.00 3.74
477 504 7.689446 AAACCTTGAACTTATAGAGGAAAGC 57.311 36.000 0.00 0.00 0.00 3.51
503 530 8.874816 CCGGTTTGAAATGAAGAAAGTTTAAAA 58.125 29.630 0.00 0.00 0.00 1.52
504 531 7.010645 GCCGGTTTGAAATGAAGAAAGTTTAAA 59.989 33.333 1.90 0.00 0.00 1.52
505 532 6.477360 GCCGGTTTGAAATGAAGAAAGTTTAA 59.523 34.615 1.90 0.00 0.00 1.52
506 533 5.980715 GCCGGTTTGAAATGAAGAAAGTTTA 59.019 36.000 1.90 0.00 0.00 2.01
507 534 4.808895 GCCGGTTTGAAATGAAGAAAGTTT 59.191 37.500 1.90 0.00 0.00 2.66
508 535 4.368315 GCCGGTTTGAAATGAAGAAAGTT 58.632 39.130 1.90 0.00 0.00 2.66
509 536 3.243737 GGCCGGTTTGAAATGAAGAAAGT 60.244 43.478 1.90 0.00 0.00 2.66
510 537 3.317150 GGCCGGTTTGAAATGAAGAAAG 58.683 45.455 1.90 0.00 0.00 2.62
511 538 2.287909 CGGCCGGTTTGAAATGAAGAAA 60.288 45.455 20.10 0.00 0.00 2.52
512 539 1.268352 CGGCCGGTTTGAAATGAAGAA 59.732 47.619 20.10 0.00 0.00 2.52
513 540 0.878416 CGGCCGGTTTGAAATGAAGA 59.122 50.000 20.10 0.00 0.00 2.87
514 541 0.878416 TCGGCCGGTTTGAAATGAAG 59.122 50.000 27.83 0.00 0.00 3.02
515 542 1.319541 TTCGGCCGGTTTGAAATGAA 58.680 45.000 27.83 4.68 0.00 2.57
516 543 1.268352 CTTTCGGCCGGTTTGAAATGA 59.732 47.619 27.83 0.00 31.78 2.57
517 544 1.268352 TCTTTCGGCCGGTTTGAAATG 59.732 47.619 27.83 13.00 31.78 2.32
536 563 9.061435 TGGATTTAAAATCCATGGTTTTGTTTC 57.939 29.630 23.83 18.34 42.81 2.78
551 578 6.493115 TCCACACACACAGATGGATTTAAAAT 59.507 34.615 0.00 0.00 36.30 1.82
586 613 3.063045 CGGAGTTTTATTTAGGACGGCAC 59.937 47.826 0.00 0.00 0.00 5.01
683 710 0.258484 ATTGCGGATTGATGTGGGGA 59.742 50.000 0.00 0.00 0.00 4.81
699 727 7.802738 TCCTTATTTATGGCGACGATTAATTG 58.197 34.615 0.00 0.78 0.00 2.32
736 765 2.863401 ACAGCGCGAGATTGTATACA 57.137 45.000 12.10 0.08 0.00 2.29
755 784 7.494625 GGTAGTAGTAAGTACATGTACGTGGTA 59.505 40.741 27.89 18.05 40.80 3.25
758 787 7.182761 GTGGTAGTAGTAAGTACATGTACGTG 58.817 42.308 27.89 13.64 40.80 4.49
760 789 6.414079 CGTGGTAGTAGTAAGTACATGTACG 58.586 44.000 26.17 11.25 40.80 3.67
761 790 6.316390 ACCGTGGTAGTAGTAAGTACATGTAC 59.684 42.308 25.51 25.51 33.78 2.90
763 792 5.256474 ACCGTGGTAGTAGTAAGTACATGT 58.744 41.667 2.69 2.69 33.78 3.21
764 793 5.824904 ACCGTGGTAGTAGTAAGTACATG 57.175 43.478 0.00 0.00 33.78 3.21
765 794 5.523916 CGTACCGTGGTAGTAGTAAGTACAT 59.476 44.000 0.00 0.00 33.78 2.29
767 796 4.868734 ACGTACCGTGGTAGTAGTAAGTAC 59.131 45.833 0.00 0.00 39.18 2.73
768 797 5.080969 ACGTACCGTGGTAGTAGTAAGTA 57.919 43.478 0.00 0.00 39.18 2.24
782 811 2.981560 CTGGCGTACCACGTACCGT 61.982 63.158 0.26 0.00 44.73 4.83
783 812 2.202518 CTGGCGTACCACGTACCG 60.203 66.667 0.26 0.00 44.73 4.02
784 813 1.010419 CAACTGGCGTACCACGTACC 61.010 60.000 0.26 0.00 44.73 3.34
785 814 0.318955 ACAACTGGCGTACCACGTAC 60.319 55.000 0.26 0.00 44.73 3.67
786 815 0.318869 CACAACTGGCGTACCACGTA 60.319 55.000 0.26 0.00 44.73 3.57
787 816 1.593209 CACAACTGGCGTACCACGT 60.593 57.895 0.26 0.00 44.73 4.49
788 817 2.950172 GCACAACTGGCGTACCACG 61.950 63.158 0.00 0.00 42.67 4.94
789 818 2.613506 GGCACAACTGGCGTACCAC 61.614 63.158 0.00 0.00 42.67 4.16
790 819 2.281208 GGCACAACTGGCGTACCA 60.281 61.111 0.00 0.00 46.51 3.25
791 820 3.634225 TGTAGGCACAACTGGCGTACC 62.634 57.143 12.78 0.00 46.50 3.34
807 836 1.515088 CGTCCTGTGCTCGCTGTAG 60.515 63.158 0.00 0.00 0.00 2.74
808 837 1.520600 TTCGTCCTGTGCTCGCTGTA 61.521 55.000 0.00 0.00 0.00 2.74
810 839 2.049156 TTCGTCCTGTGCTCGCTG 60.049 61.111 0.00 0.00 0.00 5.18
812 841 0.944311 TTTCTTCGTCCTGTGCTCGC 60.944 55.000 0.00 0.00 0.00 5.03
815 844 1.813513 CCATTTCTTCGTCCTGTGCT 58.186 50.000 0.00 0.00 0.00 4.40
816 845 0.169009 GCCATTTCTTCGTCCTGTGC 59.831 55.000 0.00 0.00 0.00 4.57
818 847 0.034896 ACGCCATTTCTTCGTCCTGT 59.965 50.000 0.00 0.00 0.00 4.00
820 849 3.139029 GACGCCATTTCTTCGTCCT 57.861 52.632 2.96 0.00 44.62 3.85
855 900 2.035626 TAAGGCTGGCTTGTGGGC 59.964 61.111 24.80 0.00 41.27 5.36
919 965 1.827399 GAGAGAGCCGTTGGGTTGGA 61.827 60.000 0.00 0.00 31.55 3.53
953 999 1.751351 GATCGGTGATGACTGAGGTGA 59.249 52.381 0.00 0.00 40.94 4.02
1019 1189 6.708054 GGCGAACCTAGTACTAATACAGTCTA 59.292 42.308 3.76 0.00 38.80 2.59
1020 1190 5.530543 GGCGAACCTAGTACTAATACAGTCT 59.469 44.000 3.76 0.00 38.80 3.24
1021 1191 5.559799 CGGCGAACCTAGTACTAATACAGTC 60.560 48.000 0.00 0.00 38.80 3.51
1022 1192 4.274459 CGGCGAACCTAGTACTAATACAGT 59.726 45.833 0.00 0.00 41.62 3.55
1023 1193 4.320057 CCGGCGAACCTAGTACTAATACAG 60.320 50.000 9.30 0.00 33.30 2.74
1024 1194 3.565482 CCGGCGAACCTAGTACTAATACA 59.435 47.826 9.30 0.00 33.30 2.29
1025 1195 3.610349 GCCGGCGAACCTAGTACTAATAC 60.610 52.174 12.58 0.00 0.00 1.89
1026 1196 2.554032 GCCGGCGAACCTAGTACTAATA 59.446 50.000 12.58 0.00 0.00 0.98
1027 1197 1.339291 GCCGGCGAACCTAGTACTAAT 59.661 52.381 12.58 0.00 0.00 1.73
1028 1198 0.740737 GCCGGCGAACCTAGTACTAA 59.259 55.000 12.58 0.00 0.00 2.24
1029 1199 1.439353 CGCCGGCGAACCTAGTACTA 61.439 60.000 44.86 1.89 42.83 1.82
1030 1200 2.768492 CGCCGGCGAACCTAGTACT 61.768 63.158 44.86 0.00 42.83 2.73
1031 1201 2.278401 CGCCGGCGAACCTAGTAC 60.278 66.667 44.86 0.00 42.83 2.73
1265 1467 3.132481 GAGGAGAGAAGGGCGAGCG 62.132 68.421 0.00 0.00 0.00 5.03
1266 1468 2.791868 GGAGGAGAGAAGGGCGAGC 61.792 68.421 0.00 0.00 0.00 5.03
1267 1469 2.131067 GGGAGGAGAGAAGGGCGAG 61.131 68.421 0.00 0.00 0.00 5.03
1268 1470 2.042843 GGGAGGAGAGAAGGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
1269 1471 3.157949 GGGGAGGAGAGAAGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
1270 1472 3.157949 CGGGGAGGAGAGAAGGGC 61.158 72.222 0.00 0.00 0.00 5.19
1271 1473 3.157949 GCGGGGAGGAGAGAAGGG 61.158 72.222 0.00 0.00 0.00 3.95
1272 1474 1.681486 GAAGCGGGGAGGAGAGAAGG 61.681 65.000 0.00 0.00 0.00 3.46
1273 1475 1.681486 GGAAGCGGGGAGGAGAGAAG 61.681 65.000 0.00 0.00 0.00 2.85
1274 1476 1.686110 GGAAGCGGGGAGGAGAGAA 60.686 63.158 0.00 0.00 0.00 2.87
1275 1477 2.042843 GGAAGCGGGGAGGAGAGA 60.043 66.667 0.00 0.00 0.00 3.10
1276 1478 2.364317 TGGAAGCGGGGAGGAGAG 60.364 66.667 0.00 0.00 0.00 3.20
1277 1479 2.683933 GTGGAAGCGGGGAGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
1278 1480 4.148825 CGTGGAAGCGGGGAGGAG 62.149 72.222 0.00 0.00 0.00 3.69
1306 1515 2.802057 CGCAGCAGATCAGATCATGACA 60.802 50.000 13.14 0.00 41.91 3.58
1307 1516 1.793532 CGCAGCAGATCAGATCATGAC 59.206 52.381 13.14 5.17 41.91 3.06
1308 1517 1.411612 ACGCAGCAGATCAGATCATGA 59.588 47.619 13.14 0.00 43.70 3.07
1309 1518 1.527311 CACGCAGCAGATCAGATCATG 59.473 52.381 13.14 9.10 0.00 3.07
1310 1519 1.867166 CACGCAGCAGATCAGATCAT 58.133 50.000 13.14 0.00 0.00 2.45
1500 2301 2.439701 TCGGCGTGGAGGTAGAGG 60.440 66.667 6.85 0.00 0.00 3.69
1621 2436 0.680921 CCAAGCATCCATCCACCGTT 60.681 55.000 0.00 0.00 0.00 4.44
1646 3074 2.801631 CCTCCCCCTGCAGATCGAC 61.802 68.421 17.39 0.00 0.00 4.20
1767 3196 3.146847 GAGGAACTGGTTGACGGAAATT 58.853 45.455 0.00 0.00 41.55 1.82
1770 3199 1.343465 GAGAGGAACTGGTTGACGGAA 59.657 52.381 0.00 0.00 41.55 4.30
2065 3640 8.600449 TGCAAAAACGAGGAAATTAATTCAAT 57.400 26.923 0.10 0.00 39.98 2.57
2069 3644 7.778470 TGTTGCAAAAACGAGGAAATTAATT 57.222 28.000 0.00 0.00 0.00 1.40
2097 3672 5.396436 CCAGCATCATCCATAGCTCATATGA 60.396 44.000 5.07 5.07 43.54 2.15
2117 3696 0.538287 ACAGGAAAAGCAGTCCCAGC 60.538 55.000 0.00 0.00 35.59 4.85
2118 3697 2.704572 CTACAGGAAAAGCAGTCCCAG 58.295 52.381 0.00 0.00 35.59 4.45
2119 3698 1.271379 GCTACAGGAAAAGCAGTCCCA 60.271 52.381 0.00 0.00 38.63 4.37
2296 3878 1.187087 TCTTCTTCGCCTCTTCCCTC 58.813 55.000 0.00 0.00 0.00 4.30
2299 3881 1.338200 TGCTTCTTCTTCGCCTCTTCC 60.338 52.381 0.00 0.00 0.00 3.46
2351 3933 0.742281 TTCTTCTGCTGCATCTCCGC 60.742 55.000 1.31 0.00 0.00 5.54
2353 3935 2.873472 CTCATTCTTCTGCTGCATCTCC 59.127 50.000 1.31 0.00 0.00 3.71
2407 3989 1.363744 GACGCCTCTTGATCAGTTGG 58.636 55.000 0.00 0.57 0.00 3.77
2410 3992 1.513158 CCGACGCCTCTTGATCAGT 59.487 57.895 0.00 0.00 0.00 3.41
2431 4013 1.516603 GCGACGGCACTTCTCTACC 60.517 63.158 0.00 0.00 39.62 3.18
2434 4016 1.373497 CAAGCGACGGCACTTCTCT 60.373 57.895 0.00 0.00 43.41 3.10
2520 4105 8.718656 AGTAGCTCTTGGTTTTATAGGATCATT 58.281 33.333 0.00 0.00 0.00 2.57
2544 4129 7.992754 ATCAAGATTCTGCAAAGAAACTAGT 57.007 32.000 0.00 0.00 31.96 2.57
2628 4216 0.673022 CAGTCTGGTTCAGCCTGAGC 60.673 60.000 0.00 0.00 39.46 4.26
2644 4232 2.027745 CCATCAGAGTACTGGTTGCAGT 60.028 50.000 0.00 0.00 43.60 4.40
2736 4324 1.062275 ACCTGCCTCTCCAGATCATCT 60.062 52.381 0.00 0.00 34.77 2.90
2883 4471 2.373502 CTCCTCCAAGAAAACCCTCAGT 59.626 50.000 0.00 0.00 0.00 3.41
2948 4536 3.772025 TGAAGTCCCTTCTCCAATCTCTC 59.228 47.826 5.65 0.00 40.73 3.20
3009 4597 3.282885 GGACCTTCTTGGGAAGCTTATG 58.717 50.000 0.00 0.00 45.44 1.90
3087 4675 4.250464 TGATCGCCGATTGTTCTAGTTTT 58.750 39.130 0.00 0.00 0.00 2.43
3119 4707 1.213296 TTCCCTTCCCCTGCTATGAC 58.787 55.000 0.00 0.00 0.00 3.06
3122 4710 2.286935 TCTTTCCCTTCCCCTGCTAT 57.713 50.000 0.00 0.00 0.00 2.97
3155 4743 1.809133 TGTACCAACACCCCTTGAGA 58.191 50.000 0.00 0.00 0.00 3.27
3216 4804 1.743958 GATCTTTCGGTCTCGGACTCA 59.256 52.381 4.41 0.00 36.95 3.41
3306 4894 4.362476 GTCCCGTACACGCCGGTT 62.362 66.667 1.90 0.00 43.98 4.44
3438 5026 6.238842 GCATATGAAGCCACTTATCAACATGT 60.239 38.462 6.97 0.00 0.00 3.21
3456 5044 2.693210 TGGTCCTCCATGAGCATATGA 58.307 47.619 6.97 0.00 37.80 2.15
3480 5068 4.104383 TGCCACTTCATTTCCTTCTTCT 57.896 40.909 0.00 0.00 0.00 2.85
3481 5069 5.163612 GGTATGCCACTTCATTTCCTTCTTC 60.164 44.000 0.00 0.00 34.09 2.87
3482 5070 4.706962 GGTATGCCACTTCATTTCCTTCTT 59.293 41.667 0.00 0.00 34.09 2.52
3549 5137 4.038271 ACTTTGGATTTCCTGCTCATCA 57.962 40.909 0.00 0.00 36.82 3.07
3578 5166 1.068287 GCAGCTCTCGTCTTCGTCAC 61.068 60.000 0.00 0.00 38.33 3.67
3647 5235 2.150218 CCACCAACGTCGACGATCG 61.150 63.158 41.52 26.47 43.02 3.69
3660 5248 0.909133 TAGCAGCATCCTCACCACCA 60.909 55.000 0.00 0.00 0.00 4.17
3762 5350 1.078637 GAAACCCCTACCGCTGTCC 60.079 63.158 0.00 0.00 0.00 4.02
3789 5377 1.885049 TCTTGGAAGGAGAGGATGGG 58.115 55.000 0.00 0.00 0.00 4.00
3876 5464 5.084519 ACCAAATCCTCATAGCCGTATCTA 58.915 41.667 0.00 0.00 0.00 1.98
4081 5673 2.663826 GGCAGAACCTCAGACAGTAG 57.336 55.000 0.00 0.00 34.51 2.57
4232 5844 2.544267 ACCTTTTCGAAACAGAGCTTCG 59.456 45.455 10.79 0.00 45.48 3.79
4247 5866 5.946377 ACTGACAGAGTTCTTCAAACCTTTT 59.054 36.000 10.08 0.00 0.00 2.27
4292 5911 1.199327 CTGATTGCTGCAGGTCACTTG 59.801 52.381 17.12 4.01 0.00 3.16
4324 5943 9.733556 TCATGAAATAGTACTGTGGTAATGTTT 57.266 29.630 5.39 0.00 39.00 2.83
4326 5945 9.905713 AATCATGAAATAGTACTGTGGTAATGT 57.094 29.630 5.39 0.00 0.00 2.71
4329 5948 9.733556 ACAAATCATGAAATAGTACTGTGGTAA 57.266 29.630 5.39 0.00 0.00 2.85
4330 5949 9.161629 CACAAATCATGAAATAGTACTGTGGTA 57.838 33.333 5.39 0.00 0.00 3.25
4331 5950 7.882791 TCACAAATCATGAAATAGTACTGTGGT 59.117 33.333 5.39 0.00 33.10 4.16
4332 5951 8.267620 TCACAAATCATGAAATAGTACTGTGG 57.732 34.615 5.39 0.00 33.10 4.17
4333 5952 9.764870 CTTCACAAATCATGAAATAGTACTGTG 57.235 33.333 5.39 3.72 35.70 3.66
4334 5953 9.725019 TCTTCACAAATCATGAAATAGTACTGT 57.275 29.630 5.39 0.00 35.70 3.55
4464 6130 1.463056 CGGCGCTCAATGTTTACAAGA 59.537 47.619 7.64 0.00 0.00 3.02
4467 6133 1.499949 GCGGCGCTCAATGTTTACA 59.500 52.632 26.86 0.00 0.00 2.41
4486 6164 1.884926 GAGGAATCTGAAGCCCGCG 60.885 63.158 0.00 0.00 0.00 6.46
4783 6497 0.395686 TATGGCAGCTCTCATCAGGC 59.604 55.000 0.00 0.00 0.00 4.85
4802 6517 0.106419 TTGGGCGTTTTCCAACTCCT 60.106 50.000 0.00 0.00 37.83 3.69
4815 6530 2.663852 AGGTTCGTTCGTTGGGCG 60.664 61.111 0.00 0.00 43.01 6.13
4817 6532 0.949105 CTCCAGGTTCGTTCGTTGGG 60.949 60.000 0.00 0.00 0.00 4.12
4990 6705 3.741476 GGCAAGCTGAACCGCCTG 61.741 66.667 0.00 0.00 41.50 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.