Multiple sequence alignment - TraesCS3B01G141600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G141600 chr3B 100.000 6228 0 0 1 6228 128561296 128567523 0.000000e+00 11502.0
1 TraesCS3B01G141600 chr3B 100.000 275 0 0 6751 7025 128568046 128568320 6.290000e-140 508.0
2 TraesCS3B01G141600 chr3B 98.438 64 0 1 481 543 32803452 32803515 2.070000e-20 111.0
3 TraesCS3B01G141600 chr3D 89.068 2415 182 36 3822 6176 81828050 81830442 0.000000e+00 2922.0
4 TraesCS3B01G141600 chr3D 90.976 1640 94 30 1632 3240 81825876 81827492 0.000000e+00 2159.0
5 TraesCS3B01G141600 chr3D 86.218 1502 81 54 19 1444 81824290 81825741 0.000000e+00 1511.0
6 TraesCS3B01G141600 chr3D 89.723 506 32 8 3305 3796 81827496 81827995 4.630000e-176 628.0
7 TraesCS3B01G141600 chr3D 86.254 291 22 8 6753 7025 81830734 81831024 4.120000e-77 300.0
8 TraesCS3B01G141600 chr3D 91.667 168 6 6 1526 1685 81825740 81825907 7.090000e-55 226.0
9 TraesCS3B01G141600 chr3D 95.699 93 4 0 1443 1535 138889868 138889960 4.390000e-32 150.0
10 TraesCS3B01G141600 chr3D 94.737 38 2 0 1691 1728 586201772 586201809 7.610000e-05 60.2
11 TraesCS3B01G141600 chr3A 94.896 1254 58 4 4976 6225 97051025 97052276 0.000000e+00 1956.0
12 TraesCS3B01G141600 chr3A 90.642 1464 113 16 3301 4751 97049344 97050796 0.000000e+00 1923.0
13 TraesCS3B01G141600 chr3A 89.202 852 34 24 625 1444 97046760 97047585 0.000000e+00 1011.0
14 TraesCS3B01G141600 chr3A 96.832 505 13 1 1727 2228 97047704 97048208 0.000000e+00 841.0
15 TraesCS3B01G141600 chr3A 86.606 545 47 8 2342 2875 97048400 97048929 4.720000e-161 579.0
16 TraesCS3B01G141600 chr3A 90.824 425 31 7 2822 3241 97048924 97049345 4.760000e-156 562.0
17 TraesCS3B01G141600 chr3A 85.650 446 28 8 142 551 97046308 97046753 3.010000e-118 436.0
18 TraesCS3B01G141600 chr3A 93.548 124 5 2 1526 1648 97047584 97047705 1.560000e-41 182.0
19 TraesCS3B01G141600 chr5A 92.510 494 31 4 924 1412 405465695 405466187 0.000000e+00 702.0
20 TraesCS3B01G141600 chr5A 93.617 94 6 0 1443 1536 2816985 2816892 2.640000e-29 141.0
21 TraesCS3B01G141600 chr5A 95.312 64 3 0 6825 6888 591603603 591603540 1.250000e-17 102.0
22 TraesCS3B01G141600 chr4D 95.789 95 4 0 1434 1528 182067433 182067339 3.390000e-33 154.0
23 TraesCS3B01G141600 chr1D 94.792 96 5 0 1442 1537 340660037 340660132 4.390000e-32 150.0
24 TraesCS3B01G141600 chr1D 90.654 107 8 2 1433 1538 64325907 64326012 2.640000e-29 141.0
25 TraesCS3B01G141600 chr2A 94.681 94 5 0 1436 1529 686840772 686840865 5.680000e-31 147.0
26 TraesCS3B01G141600 chr5B 93.000 100 6 1 1431 1529 609840300 609840399 2.040000e-30 145.0
27 TraesCS3B01G141600 chr5B 96.875 32 1 0 1689 1720 572602164 572602195 4.000000e-03 54.7
28 TraesCS3B01G141600 chr6D 91.262 103 7 2 1428 1529 68082845 68082946 9.500000e-29 139.0
29 TraesCS3B01G141600 chr2D 90.909 99 8 1 1439 1536 8781503 8781405 1.590000e-26 132.0
30 TraesCS3B01G141600 chrUn 78.689 122 17 8 1619 1735 105425079 105424962 9.770000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G141600 chr3B 128561296 128568320 7024 False 6005.00 11502 100.000000 1 7025 2 chr3B.!!$F2 7024
1 TraesCS3B01G141600 chr3D 81824290 81831024 6734 False 1291.00 2922 88.984333 19 7025 6 chr3D.!!$F3 7006
2 TraesCS3B01G141600 chr3A 97046308 97052276 5968 False 936.25 1956 91.025000 142 6225 8 chr3A.!!$F1 6083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 723 0.106217 GGACAGAGAGGGAGGGAGAG 60.106 65.000 0.00 0.00 0.00 3.20 F
664 726 0.468029 CAGAGAGGGAGGGAGAGCTC 60.468 65.000 5.27 5.27 0.00 4.09 F
1022 1107 0.533032 GTTCCAGGTTCTCGGAGGAG 59.467 60.000 4.96 0.00 41.89 3.69 F
1103 1188 1.673033 CGGTCATGGTGAAGGTGAGAC 60.673 57.143 0.00 0.00 0.00 3.36 F
2759 3099 2.300437 AGCTTTCTCGTGCCTCTACTTT 59.700 45.455 0.00 0.00 0.00 2.66 F
3511 3912 0.108186 CGCATGGGCTCTCTTGTACA 60.108 55.000 0.00 0.00 38.10 2.90 F
3631 4032 0.314935 CATGGCTGGTGGTTGACAAC 59.685 55.000 9.97 9.97 37.28 3.32 F
4848 5354 0.179084 ACACGTGTGACCCAGTCAAG 60.179 55.000 22.71 0.00 44.49 3.02 F
5072 5578 1.419762 TGTGTGGTGCCTGTAGTTCAT 59.580 47.619 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2332 2576 1.630878 ACCACATCTTCAGAGGGTTCC 59.369 52.381 0.00 0.0 0.00 3.62 R
2370 2710 1.879380 TGAAATCCAAGTGGTGCTTCG 59.121 47.619 0.00 0.0 34.69 3.79 R
2677 3017 0.321210 CACCAGCGGTCACCATAACA 60.321 55.000 0.00 0.0 31.02 2.41 R
2839 3186 2.576191 AGCAGCCATACAGGGAAGTAAA 59.424 45.455 0.00 0.0 38.09 2.01 R
4598 5057 0.099436 CACGCTGCCCAATAAGAAGC 59.901 55.000 0.00 0.0 0.00 3.86 R
4822 5311 0.179094 GGGTCACACGTGTCAGTCAA 60.179 55.000 20.49 0.0 0.00 3.18 R
5231 5738 0.250038 CTACTCGCCACCCCATCATG 60.250 60.000 0.00 0.0 0.00 3.07 R
5674 6184 0.038744 CACCAAGGGGAGACATTGCT 59.961 55.000 0.00 0.0 38.05 3.91 R
6178 6688 2.921754 CCGAACAGAGAATTACGACACC 59.078 50.000 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.135774 GCGTACAGTCGTCATCACTCA 60.136 52.381 0.00 0.00 0.00 3.41
23 24 3.181510 CGTACAGTCGTCATCACTCATCA 60.182 47.826 0.00 0.00 0.00 3.07
85 89 2.045536 CCAAGCAGGCCACTCCTC 60.046 66.667 5.01 0.00 45.52 3.71
86 90 2.045536 CAAGCAGGCCACTCCTCC 60.046 66.667 5.01 0.00 45.52 4.30
87 91 2.204059 AAGCAGGCCACTCCTCCT 60.204 61.111 5.01 0.00 45.52 3.69
94 98 2.726351 GCCACTCCTCCTTCCCTCG 61.726 68.421 0.00 0.00 0.00 4.63
107 111 2.352032 CCCTCGGCTTTCTCCTCGT 61.352 63.158 0.00 0.00 0.00 4.18
108 112 1.153745 CCTCGGCTTTCTCCTCGTG 60.154 63.158 0.00 0.00 0.00 4.35
110 114 3.181967 CGGCTTTCTCCTCGTGCG 61.182 66.667 0.00 0.00 0.00 5.34
129 133 1.544093 CGGTGCGGGGTAGATAGAGTA 60.544 57.143 0.00 0.00 0.00 2.59
130 134 2.161030 GGTGCGGGGTAGATAGAGTAG 58.839 57.143 0.00 0.00 0.00 2.57
131 135 2.224719 GGTGCGGGGTAGATAGAGTAGA 60.225 54.545 0.00 0.00 0.00 2.59
132 136 3.075884 GTGCGGGGTAGATAGAGTAGAG 58.924 54.545 0.00 0.00 0.00 2.43
133 137 2.709934 TGCGGGGTAGATAGAGTAGAGT 59.290 50.000 0.00 0.00 0.00 3.24
134 138 3.906218 TGCGGGGTAGATAGAGTAGAGTA 59.094 47.826 0.00 0.00 0.00 2.59
135 139 4.020396 TGCGGGGTAGATAGAGTAGAGTAG 60.020 50.000 0.00 0.00 0.00 2.57
136 140 4.020307 GCGGGGTAGATAGAGTAGAGTAGT 60.020 50.000 0.00 0.00 0.00 2.73
137 141 5.512921 GCGGGGTAGATAGAGTAGAGTAGTT 60.513 48.000 0.00 0.00 0.00 2.24
138 142 6.532826 CGGGGTAGATAGAGTAGAGTAGTTT 58.467 44.000 0.00 0.00 0.00 2.66
139 143 6.650390 CGGGGTAGATAGAGTAGAGTAGTTTC 59.350 46.154 0.00 0.00 0.00 2.78
140 144 6.650390 GGGGTAGATAGAGTAGAGTAGTTTCG 59.350 46.154 0.00 0.00 0.00 3.46
213 222 2.927856 TGGTGGTGCCATCCTCGT 60.928 61.111 0.00 0.00 43.61 4.18
264 278 4.341783 GTGGCTGGCTGGCTGACT 62.342 66.667 18.27 0.00 42.34 3.41
320 334 5.620205 CGCACCTGGATTATACTACTGCTAG 60.620 48.000 0.00 0.00 0.00 3.42
328 342 0.466922 TACTACTGCTAGCCCCCGAC 60.467 60.000 13.29 0.00 0.00 4.79
341 355 1.571773 CCCCGACTTCCCTGGGAAAT 61.572 60.000 27.32 19.65 46.41 2.17
343 357 0.394352 CCGACTTCCCTGGGAAATGG 60.394 60.000 27.32 23.08 41.54 3.16
382 396 2.442272 AGATCTAGCGCCGGTGGT 60.442 61.111 24.77 24.77 0.00 4.16
384 398 1.007618 GATCTAGCGCCGGTGGTAC 60.008 63.158 22.41 9.96 0.00 3.34
385 399 1.453762 GATCTAGCGCCGGTGGTACT 61.454 60.000 22.41 12.84 0.00 2.73
392 408 1.318158 CGCCGGTGGTACTACCTTCT 61.318 60.000 24.18 0.00 39.58 2.85
395 411 0.737219 CGGTGGTACTACCTTCTCGG 59.263 60.000 24.18 5.67 39.58 4.63
396 412 0.459078 GGTGGTACTACCTTCTCGGC 59.541 60.000 20.45 0.00 39.58 5.54
472 501 6.350110 CCATTAATTTGACCAGAATTGTCCGT 60.350 38.462 0.00 0.00 31.60 4.69
496 538 0.654683 CCTAAATCTCGCAGCAGCAC 59.345 55.000 0.82 0.00 42.27 4.40
536 578 1.034838 TTTGACACCAAACGGCTGCT 61.035 50.000 0.00 0.00 37.36 4.24
577 637 5.618236 ACTGGTACTACTTTGTTTTCCTCC 58.382 41.667 0.00 0.00 0.00 4.30
591 651 6.777782 TGTTTTCCTCCCAATAAAATTGCAT 58.222 32.000 0.00 0.00 0.00 3.96
609 669 6.542574 TTGCATGCCTTTTGTTTTATCTTG 57.457 33.333 16.68 0.00 0.00 3.02
652 714 0.908198 CCCCAAGAAGGACAGAGAGG 59.092 60.000 0.00 0.00 41.22 3.69
656 718 1.830477 CAAGAAGGACAGAGAGGGAGG 59.170 57.143 0.00 0.00 0.00 4.30
661 723 0.106217 GGACAGAGAGGGAGGGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
663 725 1.221213 ACAGAGAGGGAGGGAGAGCT 61.221 60.000 0.00 0.00 0.00 4.09
664 726 0.468029 CAGAGAGGGAGGGAGAGCTC 60.468 65.000 5.27 5.27 0.00 4.09
665 727 0.923729 AGAGAGGGAGGGAGAGCTCA 60.924 60.000 17.77 0.00 0.00 4.26
668 730 1.671901 GAGGGAGGGAGAGCTCAACG 61.672 65.000 17.77 0.00 0.00 4.10
734 801 5.823045 GGGAAGAGACAGAAAAGAAGAACAA 59.177 40.000 0.00 0.00 0.00 2.83
735 802 6.017523 GGGAAGAGACAGAAAAGAAGAACAAG 60.018 42.308 0.00 0.00 0.00 3.16
739 806 8.207521 AGAGACAGAAAAGAAGAACAAGAAAG 57.792 34.615 0.00 0.00 0.00 2.62
818 888 2.512515 CTGCCTGCCTACGCCTTC 60.513 66.667 0.00 0.00 0.00 3.46
909 989 0.857675 AATTATTTAGGCCCGCCCCT 59.142 50.000 0.00 0.00 39.05 4.79
933 1013 1.933021 TCCTTCCACGCCTTCTTAGA 58.067 50.000 0.00 0.00 0.00 2.10
953 1038 3.775654 CGCCTCGCCTCCCTTCTT 61.776 66.667 0.00 0.00 0.00 2.52
994 1079 1.421410 CGGCTCAAATTCGTCTCCCG 61.421 60.000 0.00 0.00 38.13 5.14
1015 1100 1.290134 ATCCCCAGTTCCAGGTTCTC 58.710 55.000 0.00 0.00 0.00 2.87
1022 1107 0.533032 GTTCCAGGTTCTCGGAGGAG 59.467 60.000 4.96 0.00 41.89 3.69
1103 1188 1.673033 CGGTCATGGTGAAGGTGAGAC 60.673 57.143 0.00 0.00 0.00 3.36
1343 1449 4.098501 GGATTGCGGAATGGAAAGAAAGAT 59.901 41.667 6.97 0.00 0.00 2.40
1449 1555 9.174166 ACAAATGACAACTTAATATGTACTCCC 57.826 33.333 0.00 0.00 0.00 4.30
1450 1556 9.396022 CAAATGACAACTTAATATGTACTCCCT 57.604 33.333 0.00 0.00 0.00 4.20
1451 1557 9.614792 AAATGACAACTTAATATGTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
1452 1558 7.973048 TGACAACTTAATATGTACTCCCTCT 57.027 36.000 0.00 0.00 0.00 3.69
1453 1559 7.782049 TGACAACTTAATATGTACTCCCTCTG 58.218 38.462 0.00 0.00 0.00 3.35
1454 1560 7.399191 TGACAACTTAATATGTACTCCCTCTGT 59.601 37.037 0.00 0.00 0.00 3.41
1455 1561 8.834004 ACAACTTAATATGTACTCCCTCTGTA 57.166 34.615 0.00 0.00 0.00 2.74
1456 1562 9.435570 ACAACTTAATATGTACTCCCTCTGTAT 57.564 33.333 0.00 0.00 0.00 2.29
1470 1576 8.276477 ACTCCCTCTGTATACTAATATAGGAGC 58.724 40.741 16.65 0.00 35.76 4.70
1471 1577 8.171337 TCCCTCTGTATACTAATATAGGAGCA 57.829 38.462 4.17 0.00 30.51 4.26
1472 1578 8.792734 TCCCTCTGTATACTAATATAGGAGCAT 58.207 37.037 4.17 0.00 30.51 3.79
1473 1579 9.427821 CCCTCTGTATACTAATATAGGAGCATT 57.572 37.037 4.17 0.00 30.51 3.56
1502 1608 9.733219 GATTACTACTTTAGTGATCTAAACGCT 57.267 33.333 9.68 0.00 44.10 5.07
1503 1609 9.733219 ATTACTACTTTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
1504 1610 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
1505 1611 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
1506 1612 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
1507 1613 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
1522 1628 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1523 1629 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1524 1630 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1525 1631 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1526 1632 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
1632 1739 4.726035 TGATAAGTACTCCTCCGATCCT 57.274 45.455 0.00 0.00 0.00 3.24
1648 1755 4.750098 CCGATCCTTATTAATTGTCGCTGT 59.250 41.667 0.00 0.00 0.00 4.40
1649 1756 5.924254 CCGATCCTTATTAATTGTCGCTGTA 59.076 40.000 0.00 0.00 0.00 2.74
1650 1757 6.089551 CCGATCCTTATTAATTGTCGCTGTAG 59.910 42.308 0.00 0.00 0.00 2.74
1651 1758 6.641314 CGATCCTTATTAATTGTCGCTGTAGT 59.359 38.462 0.00 0.00 0.00 2.73
1652 1759 7.806487 CGATCCTTATTAATTGTCGCTGTAGTA 59.194 37.037 0.00 0.00 0.00 1.82
1653 1760 8.813643 ATCCTTATTAATTGTCGCTGTAGTAC 57.186 34.615 0.00 0.00 0.00 2.73
1654 1761 7.774134 TCCTTATTAATTGTCGCTGTAGTACA 58.226 34.615 2.36 2.36 0.00 2.90
1655 1762 8.252417 TCCTTATTAATTGTCGCTGTAGTACAA 58.748 33.333 4.21 0.00 37.51 2.41
1656 1763 8.325997 CCTTATTAATTGTCGCTGTAGTACAAC 58.674 37.037 4.21 0.00 36.06 3.32
1657 1764 8.991243 TTATTAATTGTCGCTGTAGTACAACT 57.009 30.769 4.21 0.00 36.06 3.16
1658 1765 7.900782 ATTAATTGTCGCTGTAGTACAACTT 57.099 32.000 4.21 0.00 36.06 2.66
1659 1766 7.718272 TTAATTGTCGCTGTAGTACAACTTT 57.282 32.000 4.21 2.16 36.06 2.66
1660 1767 5.591643 ATTGTCGCTGTAGTACAACTTTG 57.408 39.130 4.21 0.00 36.06 2.77
1661 1768 4.049546 TGTCGCTGTAGTACAACTTTGT 57.950 40.909 4.21 0.00 44.86 2.83
1662 1769 4.435425 TGTCGCTGTAGTACAACTTTGTT 58.565 39.130 4.21 0.00 42.35 2.83
1663 1770 4.269123 TGTCGCTGTAGTACAACTTTGTTG 59.731 41.667 4.21 8.66 42.35 3.33
1664 1771 4.269363 GTCGCTGTAGTACAACTTTGTTGT 59.731 41.667 18.13 18.13 42.35 3.32
1665 1772 4.505191 TCGCTGTAGTACAACTTTGTTGTC 59.495 41.667 17.68 10.69 42.35 3.18
1666 1773 4.605354 CGCTGTAGTACAACTTTGTTGTCG 60.605 45.833 17.68 10.58 42.35 4.35
1667 1774 4.758561 CTGTAGTACAACTTTGTTGTCGC 58.241 43.478 17.68 12.59 42.35 5.19
1668 1775 4.435425 TGTAGTACAACTTTGTTGTCGCT 58.565 39.130 17.68 17.62 42.35 4.93
1669 1776 3.944422 AGTACAACTTTGTTGTCGCTG 57.056 42.857 17.68 0.00 42.35 5.18
1670 1777 3.527533 AGTACAACTTTGTTGTCGCTGA 58.472 40.909 17.68 0.00 42.35 4.26
1671 1778 4.127171 AGTACAACTTTGTTGTCGCTGAT 58.873 39.130 17.68 0.00 42.35 2.90
1672 1779 4.574828 AGTACAACTTTGTTGTCGCTGATT 59.425 37.500 17.68 0.00 42.35 2.57
1673 1780 4.370364 ACAACTTTGTTGTCGCTGATTT 57.630 36.364 9.91 0.00 38.47 2.17
1674 1781 5.493133 ACAACTTTGTTGTCGCTGATTTA 57.507 34.783 9.91 0.00 38.47 1.40
1675 1782 5.270853 ACAACTTTGTTGTCGCTGATTTAC 58.729 37.500 9.91 0.00 38.47 2.01
1676 1783 5.065988 ACAACTTTGTTGTCGCTGATTTACT 59.934 36.000 9.91 0.00 38.47 2.24
1677 1784 6.259167 ACAACTTTGTTGTCGCTGATTTACTA 59.741 34.615 9.91 0.00 38.47 1.82
1678 1785 6.224420 ACTTTGTTGTCGCTGATTTACTAC 57.776 37.500 0.00 0.00 0.00 2.73
1679 1786 5.756347 ACTTTGTTGTCGCTGATTTACTACA 59.244 36.000 0.00 0.00 0.00 2.74
1680 1787 6.259167 ACTTTGTTGTCGCTGATTTACTACAA 59.741 34.615 0.00 0.00 37.18 2.41
1681 1788 5.585500 TGTTGTCGCTGATTTACTACAAC 57.415 39.130 8.73 8.73 44.24 3.32
1682 1789 5.294356 TGTTGTCGCTGATTTACTACAACT 58.706 37.500 14.86 0.00 44.28 3.16
1683 1790 5.756347 TGTTGTCGCTGATTTACTACAACTT 59.244 36.000 14.86 0.00 44.28 2.66
1684 1791 6.259167 TGTTGTCGCTGATTTACTACAACTTT 59.741 34.615 14.86 0.00 44.28 2.66
1685 1792 7.438757 TGTTGTCGCTGATTTACTACAACTTTA 59.561 33.333 14.86 0.00 44.28 1.85
1686 1793 8.440833 GTTGTCGCTGATTTACTACAACTTTAT 58.559 33.333 0.00 0.00 41.99 1.40
1687 1794 9.642327 TTGTCGCTGATTTACTACAACTTTATA 57.358 29.630 0.00 0.00 0.00 0.98
1688 1795 9.079833 TGTCGCTGATTTACTACAACTTTATAC 57.920 33.333 0.00 0.00 0.00 1.47
1689 1796 8.538039 GTCGCTGATTTACTACAACTTTATACC 58.462 37.037 0.00 0.00 0.00 2.73
1690 1797 8.472413 TCGCTGATTTACTACAACTTTATACCT 58.528 33.333 0.00 0.00 0.00 3.08
1691 1798 9.740239 CGCTGATTTACTACAACTTTATACCTA 57.260 33.333 0.00 0.00 0.00 3.08
1700 1807 9.953565 ACTACAACTTTATACCTAAATCAGCAA 57.046 29.630 0.00 0.00 0.00 3.91
1702 1809 8.630054 ACAACTTTATACCTAAATCAGCAACA 57.370 30.769 0.00 0.00 0.00 3.33
1703 1810 9.073475 ACAACTTTATACCTAAATCAGCAACAA 57.927 29.630 0.00 0.00 0.00 2.83
1713 1820 9.420118 ACCTAAATCAGCAACAATTAATATGGA 57.580 29.630 0.00 0.00 0.00 3.41
1717 1824 6.558771 TCAGCAACAATTAATATGGATCCG 57.441 37.500 7.39 0.00 0.00 4.18
1718 1825 6.295249 TCAGCAACAATTAATATGGATCCGA 58.705 36.000 7.39 0.00 0.00 4.55
1719 1826 6.427853 TCAGCAACAATTAATATGGATCCGAG 59.572 38.462 7.39 0.00 0.00 4.63
1720 1827 5.707298 AGCAACAATTAATATGGATCCGAGG 59.293 40.000 7.39 0.00 0.00 4.63
1721 1828 5.106157 GCAACAATTAATATGGATCCGAGGG 60.106 44.000 7.39 0.00 0.00 4.30
1722 1829 6.237901 CAACAATTAATATGGATCCGAGGGA 58.762 40.000 7.39 0.00 35.55 4.20
1723 1830 6.054860 ACAATTAATATGGATCCGAGGGAG 57.945 41.667 7.39 0.00 34.05 4.30
1724 1831 5.548056 ACAATTAATATGGATCCGAGGGAGT 59.452 40.000 7.39 0.00 34.05 3.85
1725 1832 6.729100 ACAATTAATATGGATCCGAGGGAGTA 59.271 38.462 7.39 0.00 34.05 2.59
1726 1833 7.403231 ACAATTAATATGGATCCGAGGGAGTAT 59.597 37.037 7.39 0.00 34.05 2.12
1727 1834 6.791867 TTAATATGGATCCGAGGGAGTATG 57.208 41.667 7.39 0.00 34.05 2.39
1790 2017 4.516698 GCAAAGTGATACACCCCATATCTG 59.483 45.833 0.00 0.00 34.49 2.90
1864 2092 4.748102 GCGTATTTACCAGAAATCGATCCA 59.252 41.667 0.00 0.00 0.00 3.41
2297 2528 7.693132 AGGATATCAGTATGCCATGTGTTTAT 58.307 34.615 4.83 0.00 34.76 1.40
2368 2708 7.496346 AGATGTGGTCCAGAAAGTTATAGAA 57.504 36.000 0.00 0.00 0.00 2.10
2370 2710 8.207545 AGATGTGGTCCAGAAAGTTATAGAATC 58.792 37.037 0.00 0.00 0.00 2.52
2375 2715 6.201234 GGTCCAGAAAGTTATAGAATCGAAGC 59.799 42.308 0.00 0.00 0.00 3.86
2402 2742 6.046593 CACTTGGATTTCATATGCAATGCTT 58.953 36.000 17.57 2.25 0.00 3.91
2403 2743 6.537301 CACTTGGATTTCATATGCAATGCTTT 59.463 34.615 17.57 0.00 0.00 3.51
2404 2744 6.537301 ACTTGGATTTCATATGCAATGCTTTG 59.463 34.615 17.57 7.93 35.85 2.77
2424 2764 6.675486 GCTTTGCTATCGTTTATCAGCTTTCA 60.675 38.462 0.00 0.00 35.05 2.69
2454 2794 9.023962 TCATGAGCTAAATTGTTCCTTTGTATT 57.976 29.630 0.00 0.00 0.00 1.89
2471 2811 9.353999 CCTTTGTATTAAACCTTCAATGCTTAC 57.646 33.333 0.00 0.00 0.00 2.34
2496 2836 5.351948 AACTGTTTGTTGCTTATTGGGTT 57.648 34.783 0.00 0.00 37.52 4.11
2503 2843 7.655328 TGTTTGTTGCTTATTGGGTTAAGATTG 59.345 33.333 0.00 0.00 32.02 2.67
2512 2852 8.707796 TTATTGGGTTAAGATTGTTGTTGGTA 57.292 30.769 0.00 0.00 0.00 3.25
2517 2857 7.070074 TGGGTTAAGATTGTTGTTGGTAATGTT 59.930 33.333 0.00 0.00 0.00 2.71
2518 2858 7.929245 GGGTTAAGATTGTTGTTGGTAATGTTT 59.071 33.333 0.00 0.00 0.00 2.83
2519 2859 8.760569 GGTTAAGATTGTTGTTGGTAATGTTTG 58.239 33.333 0.00 0.00 0.00 2.93
2520 2860 9.522804 GTTAAGATTGTTGTTGGTAATGTTTGA 57.477 29.630 0.00 0.00 0.00 2.69
2522 2862 8.647143 AAGATTGTTGTTGGTAATGTTTGAAG 57.353 30.769 0.00 0.00 0.00 3.02
2531 2871 5.450453 TGGTAATGTTTGAAGGTGAAGGAA 58.550 37.500 0.00 0.00 0.00 3.36
2576 2916 7.509546 TCTTGTTAGCCCTATCCTTATTTCTG 58.490 38.462 0.00 0.00 0.00 3.02
2594 2934 3.325870 TCTGTACATTGTCTTCTTGGCG 58.674 45.455 0.00 0.00 0.00 5.69
2625 2965 5.877012 ACAGTTAGTGTATCCTTTGCTGATG 59.123 40.000 0.00 0.00 37.75 3.07
2633 2973 6.374333 GTGTATCCTTTGCTGATGTTTTAGGA 59.626 38.462 0.00 0.00 35.03 2.94
2677 3017 7.344352 AGAGAGAATAAGCTAACCAAGTCATCT 59.656 37.037 0.00 0.00 0.00 2.90
2712 3052 3.860754 GCTGGTGCAAATCAGGTAAAACC 60.861 47.826 12.81 0.00 37.60 3.27
2713 3053 6.065495 GCTGGTGCAAATCAGGTAAAACCT 62.065 45.833 12.81 0.00 44.13 3.50
2759 3099 2.300437 AGCTTTCTCGTGCCTCTACTTT 59.700 45.455 0.00 0.00 0.00 2.66
2788 3135 7.674120 TGCATCATTTAGCTGTCAGACTATAT 58.326 34.615 3.32 3.29 0.00 0.86
2805 3152 9.003658 CAGACTATATGTTATTGTCCCCAATTC 57.996 37.037 5.78 0.00 41.50 2.17
2829 3176 9.605275 TTCATCTCCTGTTTTAGTTCTATGATG 57.395 33.333 0.00 0.00 0.00 3.07
2830 3177 8.981659 TCATCTCCTGTTTTAGTTCTATGATGA 58.018 33.333 0.00 0.00 34.87 2.92
2855 3202 4.569719 ACCTGTTTACTTCCCTGTATGG 57.430 45.455 0.00 0.00 0.00 2.74
2863 3210 1.486310 CTTCCCTGTATGGCTGCTACA 59.514 52.381 0.00 0.37 0.00 2.74
2893 3288 8.747538 ATCTTGTTTTACAACTAGGTTTGTCT 57.252 30.769 2.23 0.00 40.29 3.41
2993 3388 4.614535 GCTGGTGATTCAGTTGTCATGTTC 60.615 45.833 0.00 0.00 37.12 3.18
3002 3397 2.742053 AGTTGTCATGTTCGCACCATAC 59.258 45.455 0.00 0.00 0.00 2.39
3106 3501 8.933653 TCATCCTGATGTTGGTAATATGACTAA 58.066 33.333 7.00 0.00 39.72 2.24
3189 3589 6.857777 ATTAGATCAAGTGCTGACATAAGC 57.142 37.500 0.00 0.00 43.82 3.09
3239 3640 6.011481 TGGTCCAAGAAAAATTTATACGGGT 58.989 36.000 0.00 0.00 0.00 5.28
3240 3641 6.151480 TGGTCCAAGAAAAATTTATACGGGTC 59.849 38.462 0.00 0.00 0.00 4.46
3241 3642 6.151480 GGTCCAAGAAAAATTTATACGGGTCA 59.849 38.462 0.00 0.00 0.00 4.02
3242 3643 7.309316 GGTCCAAGAAAAATTTATACGGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
3243 3644 8.248253 GTCCAAGAAAAATTTATACGGGTCAAT 58.752 33.333 0.00 0.00 0.00 2.57
3244 3645 8.808092 TCCAAGAAAAATTTATACGGGTCAATT 58.192 29.630 0.00 0.00 0.00 2.32
3245 3646 8.868916 CCAAGAAAAATTTATACGGGTCAATTG 58.131 33.333 0.00 0.00 0.00 2.32
3246 3647 9.632807 CAAGAAAAATTTATACGGGTCAATTGA 57.367 29.630 3.38 3.38 0.00 2.57
3253 3654 9.594478 AATTTATACGGGTCAATTGATTTTTCC 57.406 29.630 12.12 7.44 0.00 3.13
3254 3655 7.948034 TTATACGGGTCAATTGATTTTTCCT 57.052 32.000 12.12 0.00 0.00 3.36
3255 3656 6.850752 ATACGGGTCAATTGATTTTTCCTT 57.149 33.333 12.12 5.45 0.00 3.36
3256 3657 5.545063 ACGGGTCAATTGATTTTTCCTTT 57.455 34.783 12.12 0.00 0.00 3.11
3257 3658 5.924356 ACGGGTCAATTGATTTTTCCTTTT 58.076 33.333 12.12 0.00 0.00 2.27
3258 3659 5.757808 ACGGGTCAATTGATTTTTCCTTTTG 59.242 36.000 12.12 2.85 0.00 2.44
3259 3660 5.179182 CGGGTCAATTGATTTTTCCTTTTGG 59.821 40.000 12.12 0.00 42.21 3.28
3276 3677 2.205022 TGGAACAATGAGCTCCCTTG 57.795 50.000 19.27 19.27 31.92 3.61
3277 3678 1.425066 TGGAACAATGAGCTCCCTTGT 59.575 47.619 20.31 20.31 34.71 3.16
3278 3679 2.087646 GGAACAATGAGCTCCCTTGTC 58.912 52.381 24.02 18.35 32.18 3.18
3279 3680 1.734465 GAACAATGAGCTCCCTTGTCG 59.266 52.381 24.02 6.39 32.18 4.35
3280 3681 0.976641 ACAATGAGCTCCCTTGTCGA 59.023 50.000 20.31 0.00 0.00 4.20
3281 3682 1.556911 ACAATGAGCTCCCTTGTCGAT 59.443 47.619 20.31 0.30 0.00 3.59
3282 3683 2.026822 ACAATGAGCTCCCTTGTCGATT 60.027 45.455 20.31 6.02 0.00 3.34
3283 3684 3.012518 CAATGAGCTCCCTTGTCGATTT 58.987 45.455 12.15 0.00 0.00 2.17
3284 3685 2.386661 TGAGCTCCCTTGTCGATTTC 57.613 50.000 12.15 0.00 0.00 2.17
3285 3686 1.902508 TGAGCTCCCTTGTCGATTTCT 59.097 47.619 12.15 0.00 0.00 2.52
3286 3687 3.096852 TGAGCTCCCTTGTCGATTTCTA 58.903 45.455 12.15 0.00 0.00 2.10
3287 3688 3.706594 TGAGCTCCCTTGTCGATTTCTAT 59.293 43.478 12.15 0.00 0.00 1.98
3288 3689 4.162320 TGAGCTCCCTTGTCGATTTCTATT 59.838 41.667 12.15 0.00 0.00 1.73
3289 3690 5.362717 TGAGCTCCCTTGTCGATTTCTATTA 59.637 40.000 12.15 0.00 0.00 0.98
3290 3691 6.042093 TGAGCTCCCTTGTCGATTTCTATTAT 59.958 38.462 12.15 0.00 0.00 1.28
3291 3692 7.232737 TGAGCTCCCTTGTCGATTTCTATTATA 59.767 37.037 12.15 0.00 0.00 0.98
3292 3693 7.607250 AGCTCCCTTGTCGATTTCTATTATAG 58.393 38.462 0.00 0.00 0.00 1.31
3293 3694 7.451877 AGCTCCCTTGTCGATTTCTATTATAGA 59.548 37.037 0.00 0.00 0.00 1.98
3294 3695 8.088981 GCTCCCTTGTCGATTTCTATTATAGAA 58.911 37.037 10.32 10.32 42.68 2.10
3340 3741 6.849085 TGTTTGGGATGCATATTTTACACT 57.151 33.333 0.00 0.00 0.00 3.55
3342 3743 4.916983 TGGGATGCATATTTTACACTGC 57.083 40.909 0.00 0.00 35.21 4.40
3345 3746 4.097741 GGGATGCATATTTTACACTGCACA 59.902 41.667 0.00 0.00 46.35 4.57
3364 3765 5.408909 TGCACATAAAAATGCAGATTGGTTG 59.591 36.000 0.00 0.00 46.63 3.77
3481 3882 2.112190 CAGGTTAACTCTCTCCCCTCC 58.888 57.143 5.42 0.00 0.00 4.30
3485 3886 0.935194 TAACTCTCTCCCCTCCCTCC 59.065 60.000 0.00 0.00 0.00 4.30
3488 3889 2.015726 TCTCTCCCCTCCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
3489 3890 2.204624 TCTCCCCTCCCTCCCTCA 60.205 66.667 0.00 0.00 0.00 3.86
3490 3891 2.041405 CTCCCCTCCCTCCCTCAC 60.041 72.222 0.00 0.00 0.00 3.51
3491 3892 2.540910 TCCCCTCCCTCCCTCACT 60.541 66.667 0.00 0.00 0.00 3.41
3492 3893 2.041405 CCCCTCCCTCCCTCACTC 60.041 72.222 0.00 0.00 0.00 3.51
3493 3894 2.443016 CCCTCCCTCCCTCACTCG 60.443 72.222 0.00 0.00 0.00 4.18
3511 3912 0.108186 CGCATGGGCTCTCTTGTACA 60.108 55.000 0.00 0.00 38.10 2.90
3524 3925 0.544223 TTGTACACCTGCACACACCT 59.456 50.000 0.00 0.00 0.00 4.00
3531 3932 2.828095 TGCACACACCTGCACACC 60.828 61.111 0.00 0.00 42.36 4.16
3533 3934 3.279116 CACACACCTGCACACCCG 61.279 66.667 0.00 0.00 0.00 5.28
3631 4032 0.314935 CATGGCTGGTGGTTGACAAC 59.685 55.000 9.97 9.97 37.28 3.32
3674 4078 7.711846 ACTGATACACTTGCATTTGTTTGTTA 58.288 30.769 6.06 0.00 0.00 2.41
3715 4129 9.218525 TCCTCAATCCTCTCTCATATTTAAACT 57.781 33.333 0.00 0.00 0.00 2.66
3750 4165 5.572211 AGTGCAGACATAATGTTTTATGCG 58.428 37.500 5.80 0.00 45.75 4.73
3776 4191 6.748333 ACAATGAGTCACACCTGAATATTG 57.252 37.500 0.00 0.00 30.37 1.90
3796 4211 5.652994 TTGCCACCTTAAATCATGGTTAC 57.347 39.130 0.00 0.00 32.40 2.50
3819 4236 7.750947 ACAGTTTAGGAGGACTGGTTATTAT 57.249 36.000 8.20 0.00 45.78 1.28
3831 4275 8.686334 AGGACTGGTTATTATGCAAACTAAATG 58.314 33.333 0.00 0.00 0.00 2.32
3873 4317 9.075519 ACAGAATACAATTTTAATGTGAATGCG 57.924 29.630 0.00 0.00 32.27 4.73
3931 4375 7.385267 TGCCATTTAGCATTGTCTTTAAACAT 58.615 30.769 0.00 0.00 38.00 2.71
4045 4492 6.295575 GCTAAGATAAGGGATCTATGCTGTGT 60.296 42.308 0.00 0.00 44.68 3.72
4062 4509 5.982516 TGCTGTGTAATGGTTTGTCAAATTC 59.017 36.000 0.40 0.00 0.00 2.17
4104 4552 3.404224 AACTTCGGAAAGTCCTCCTTC 57.596 47.619 0.00 0.00 45.07 3.46
4109 4557 0.693049 GGAAAGTCCTCCTTCTGGCA 59.307 55.000 0.00 0.00 32.53 4.92
4127 4581 2.079925 GCAACAACTCTAGCAGAAGGG 58.920 52.381 0.00 0.00 0.00 3.95
4132 4586 3.686916 AACTCTAGCAGAAGGGTTGAC 57.313 47.619 0.00 0.00 38.77 3.18
4172 4626 3.246112 CAACCCGTCTGTCCCCCA 61.246 66.667 0.00 0.00 0.00 4.96
4173 4627 3.246880 AACCCGTCTGTCCCCCAC 61.247 66.667 0.00 0.00 0.00 4.61
4293 4750 3.266772 TGATTGCCTCCTTGTCCTGTATT 59.733 43.478 0.00 0.00 0.00 1.89
4323 4781 7.829725 TGCTAGTGATTTTCATTTGCAGTATT 58.170 30.769 5.36 0.00 39.10 1.89
4326 4784 9.722056 CTAGTGATTTTCATTTGCAGTATTACC 57.278 33.333 0.00 0.00 0.00 2.85
4327 4785 8.121305 AGTGATTTTCATTTGCAGTATTACCA 57.879 30.769 0.00 0.00 0.00 3.25
4351 4809 1.078143 AGCCTCGCTTGGTTGATCC 60.078 57.895 0.00 0.00 33.89 3.36
4361 4819 2.307496 TGGTTGATCCACAATGCCTT 57.693 45.000 0.00 0.00 41.93 4.35
4384 4842 2.203938 GGTGTGAGGGAGGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
4449 4908 6.418057 TTTGATGGTGTGAAAAATAAGCCT 57.582 33.333 0.00 0.00 0.00 4.58
4461 4920 7.329471 GTGAAAAATAAGCCTTCCAAATCACTC 59.671 37.037 0.00 0.00 31.94 3.51
4470 4929 2.778299 TCCAAATCACTCAAAGGTCGG 58.222 47.619 0.00 0.00 0.00 4.79
4486 4945 5.806654 AGGTCGGTTAACTAACAGGTTAA 57.193 39.130 5.42 0.00 38.73 2.01
4519 4978 2.731027 GCGTTTTAAAAGCGAGGGGATG 60.731 50.000 19.88 0.00 0.00 3.51
4560 5019 6.884295 CCCATGTTGAGTGATTAGTAAAGGAA 59.116 38.462 0.00 0.00 0.00 3.36
4596 5055 4.021916 CTCCAGAAAGCAATCCCAGATTT 58.978 43.478 0.00 0.00 0.00 2.17
4598 5057 3.118884 CCAGAAAGCAATCCCAGATTTGG 60.119 47.826 0.00 0.00 44.60 3.28
4602 5061 2.105766 AGCAATCCCAGATTTGGCTTC 58.894 47.619 0.00 0.00 43.58 3.86
4607 5066 5.163374 GCAATCCCAGATTTGGCTTCTTATT 60.163 40.000 0.00 0.00 43.58 1.40
4618 5077 1.737838 CTTCTTATTGGGCAGCGTGA 58.262 50.000 0.00 0.00 0.00 4.35
4655 5114 1.825474 TCGGAAGGAACAGGATCTGTC 59.175 52.381 0.75 0.00 44.62 3.51
4672 5131 2.690497 CTGTCCGTAGACCTGTGATCAT 59.310 50.000 0.00 0.00 42.81 2.45
4690 5149 8.041919 TGTGATCATGCAATCAATATTTGGTTT 58.958 29.630 0.00 0.00 37.41 3.27
4699 5159 9.598517 GCAATCAATATTTGGTTTATTTCTCCA 57.401 29.630 0.00 0.00 29.90 3.86
4712 5172 7.438160 GGTTTATTTCTCCAACTTTGTCCTTTG 59.562 37.037 0.00 0.00 0.00 2.77
4751 5211 5.403246 GTGTCTACATCTGTACTTGACTGG 58.597 45.833 0.00 0.00 29.73 4.00
4753 5213 2.770164 ACATCTGTACTTGACTGGCC 57.230 50.000 0.00 0.00 0.00 5.36
4759 5248 3.069872 TCTGTACTTGACTGGCCGTTTTA 59.930 43.478 0.00 0.00 0.00 1.52
4771 5260 6.675026 ACTGGCCGTTTTACTATTTTCTTTC 58.325 36.000 0.00 0.00 0.00 2.62
4778 5267 9.169592 CCGTTTTACTATTTTCTTTCCCTGATA 57.830 33.333 0.00 0.00 0.00 2.15
4802 5291 6.638968 ATTGACGATTCTTCGCTCGTGAATT 61.639 40.000 0.79 0.00 45.12 2.17
4803 5292 2.948856 CGATTCTTCGCTCGTGAATTG 58.051 47.619 11.70 11.17 38.75 2.32
4809 5298 1.629013 TCGCTCGTGAATTGCACTAG 58.371 50.000 0.00 0.00 45.49 2.57
4815 5304 5.402568 CGCTCGTGAATTGCACTAGTAATAT 59.597 40.000 0.00 0.00 45.49 1.28
4816 5305 6.074302 CGCTCGTGAATTGCACTAGTAATATT 60.074 38.462 0.00 0.00 45.49 1.28
4819 5308 9.988350 CTCGTGAATTGCACTAGTAATATTTTT 57.012 29.630 0.00 0.00 45.49 1.94
4837 5343 4.850859 TTTTACTTGACTGACACGTGTG 57.149 40.909 28.82 15.53 33.19 3.82
4845 5351 0.597637 CTGACACGTGTGACCCAGTC 60.598 60.000 28.82 9.47 0.00 3.51
4848 5354 0.179084 ACACGTGTGACCCAGTCAAG 60.179 55.000 22.71 0.00 44.49 3.02
4861 5367 6.722590 TGACCCAGTCAAGTCTTGTATACTTA 59.277 38.462 12.30 0.00 39.78 2.24
4864 5370 6.535508 CCCAGTCAAGTCTTGTATACTTAAGC 59.464 42.308 12.30 0.00 35.44 3.09
4878 5384 8.264347 TGTATACTTAAGCATTTGATGTGGAGA 58.736 33.333 1.29 0.00 0.00 3.71
4900 5406 7.284716 GGAGACGTTCAATTCCCCTATATTTTT 59.715 37.037 0.00 0.00 0.00 1.94
4936 5442 8.308207 TGTACTATACAGTGCTTGTGTTTCATA 58.692 33.333 4.92 0.00 41.10 2.15
4943 5449 7.530010 ACAGTGCTTGTGTTTCATACATATTC 58.470 34.615 0.00 0.00 38.99 1.75
4945 5451 7.695201 CAGTGCTTGTGTTTCATACATATTCTG 59.305 37.037 0.00 0.00 39.39 3.02
4948 5454 8.453320 TGCTTGTGTTTCATACATATTCTGAAG 58.547 33.333 0.00 0.00 39.39 3.02
5006 5512 9.729281 ATCTTTTGCAATGGTTTTAGATTCATT 57.271 25.926 0.00 0.00 0.00 2.57
5072 5578 1.419762 TGTGTGGTGCCTGTAGTTCAT 59.580 47.619 0.00 0.00 0.00 2.57
5231 5738 2.352960 CTCGTTCTCAAAGGCTTATGGC 59.647 50.000 0.00 0.00 40.90 4.40
5246 5753 4.504596 GGCATGATGGGGTGGCGA 62.505 66.667 0.00 0.00 0.00 5.54
5298 5806 9.630098 CTTTTCTATCTTTTGCTTATGCTTCAA 57.370 29.630 1.96 0.00 40.48 2.69
5331 5840 5.238583 AGGACTGAATACTGAACCTTTTCG 58.761 41.667 0.00 0.00 34.04 3.46
5377 5886 9.326339 GCACAAGTACTTTAATTGTTACTAAGC 57.674 33.333 5.07 0.00 43.53 3.09
5455 5965 7.331934 TGCAATCTGTGTAAGTAAGAAGATGAC 59.668 37.037 0.00 0.00 0.00 3.06
5473 5983 7.726033 AGATGACCAGTTAGTCTTACAAGAT 57.274 36.000 0.00 0.00 37.39 2.40
5674 6184 3.043713 CGCGAGCTGCTTGTGGAA 61.044 61.111 20.31 0.00 43.27 3.53
5728 6238 1.062488 GTGGGGAGGGTGCCATCTAT 61.062 60.000 2.83 0.00 0.00 1.98
5740 6250 3.071602 GTGCCATCTATCTCTGGGCTAAA 59.928 47.826 0.00 0.00 44.85 1.85
5863 6373 3.146066 CATCCGTGTTTCTTTTGGAGGA 58.854 45.455 0.00 0.00 32.49 3.71
5869 6379 4.095782 CGTGTTTCTTTTGGAGGACTGAAA 59.904 41.667 0.00 0.00 0.00 2.69
5872 6382 5.949354 TGTTTCTTTTGGAGGACTGAAAGAA 59.051 36.000 6.14 6.14 42.86 2.52
5881 6391 4.202264 GGAGGACTGAAAGAAGAAGACACA 60.202 45.833 0.00 0.00 37.43 3.72
6004 6514 7.984422 ACATTTCTACATTCAGATCACACAA 57.016 32.000 0.00 0.00 0.00 3.33
6120 6630 0.106569 CATGCTGGAGGTGCCCAATA 60.107 55.000 0.00 0.00 35.47 1.90
6139 6649 5.221303 CCAATAGGAATGGCAATTGGTGTAG 60.221 44.000 16.34 0.00 42.18 2.74
6165 6675 5.009631 AGAATTGGGGCAAAATAAAAAGCC 58.990 37.500 0.00 0.00 46.28 4.35
6176 6686 0.682855 TAAAAAGCCATCCAGCCCCG 60.683 55.000 0.00 0.00 0.00 5.73
6177 6687 2.730129 AAAAAGCCATCCAGCCCCGT 62.730 55.000 0.00 0.00 0.00 5.28
6178 6688 3.944250 AAAGCCATCCAGCCCCGTG 62.944 63.158 0.00 0.00 0.00 4.94
6210 6720 1.546476 CTCTGTTCGGTACTTCCTGCT 59.454 52.381 0.00 0.00 0.00 4.24
6225 6735 5.710567 ACTTCCTGCTGTTTAATTTACCCTC 59.289 40.000 0.00 0.00 0.00 4.30
6226 6736 4.595986 TCCTGCTGTTTAATTTACCCTCC 58.404 43.478 0.00 0.00 0.00 4.30
6796 7306 7.916552 TCTGTTTTACTTTAGTTCTTCACAGC 58.083 34.615 0.00 0.00 0.00 4.40
6798 7308 7.916552 TGTTTTACTTTAGTTCTTCACAGCTC 58.083 34.615 0.00 0.00 0.00 4.09
6835 7357 5.778862 AGAATTTGTTAAAACCCATGGTCG 58.221 37.500 11.73 0.00 33.12 4.79
6839 7361 6.896021 TTTGTTAAAACCCATGGTCGATAA 57.104 33.333 11.73 2.28 33.12 1.75
6862 7384 4.537135 TTTGATCCTACACTGACAGGAC 57.463 45.455 7.51 3.34 43.64 3.85
6872 7394 0.947244 CTGACAGGACCAACAAGTGC 59.053 55.000 0.00 0.00 0.00 4.40
6886 7408 5.221028 CCAACAAGTGCTTACTGAACATGAA 60.221 40.000 0.00 0.00 28.23 2.57
6890 7412 4.330250 AGTGCTTACTGAACATGAATGCT 58.670 39.130 0.00 0.00 0.00 3.79
6918 7440 4.671880 CACCAATGCAAATCCATGTTTG 57.328 40.909 0.00 4.78 41.02 2.93
6940 7463 4.775664 GCAAGAAAAACATGTTGCAATCC 58.224 39.130 12.82 0.00 43.86 3.01
6957 7480 5.716228 TGCAATCCCAACTCAACTAATGAAT 59.284 36.000 0.00 0.00 37.67 2.57
6981 7504 2.451490 TGTTGTTGTGCCCTCTGAAAA 58.549 42.857 0.00 0.00 0.00 2.29
7010 7538 8.967664 TGGTAATGTTGTTGTACTCTTTAAGT 57.032 30.769 0.00 0.00 42.33 2.24
7011 7539 9.048446 TGGTAATGTTGTTGTACTCTTTAAGTC 57.952 33.333 0.00 0.00 39.55 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.135774 TGAGTGATGACGACTGTACGC 60.136 52.381 0.00 0.00 36.70 4.42
1 2 2.894307 TGAGTGATGACGACTGTACG 57.106 50.000 0.00 0.00 39.31 3.67
2 3 4.099120 GTGATGAGTGATGACGACTGTAC 58.901 47.826 0.00 0.00 0.00 2.90
3 4 3.128764 GGTGATGAGTGATGACGACTGTA 59.871 47.826 0.00 0.00 0.00 2.74
4 5 2.094494 GGTGATGAGTGATGACGACTGT 60.094 50.000 0.00 0.00 0.00 3.55
5 6 2.534298 GGTGATGAGTGATGACGACTG 58.466 52.381 0.00 0.00 0.00 3.51
6 7 1.478510 GGGTGATGAGTGATGACGACT 59.521 52.381 0.00 0.00 0.00 4.18
7 8 1.799181 CGGGTGATGAGTGATGACGAC 60.799 57.143 0.00 0.00 0.00 4.34
8 9 0.455815 CGGGTGATGAGTGATGACGA 59.544 55.000 0.00 0.00 0.00 4.20
9 10 1.148157 GCGGGTGATGAGTGATGACG 61.148 60.000 0.00 0.00 0.00 4.35
10 11 0.811616 GGCGGGTGATGAGTGATGAC 60.812 60.000 0.00 0.00 0.00 3.06
11 12 1.522092 GGCGGGTGATGAGTGATGA 59.478 57.895 0.00 0.00 0.00 2.92
12 13 1.884464 CGGCGGGTGATGAGTGATG 60.884 63.158 0.00 0.00 0.00 3.07
13 14 2.501128 CGGCGGGTGATGAGTGAT 59.499 61.111 0.00 0.00 0.00 3.06
14 15 4.451150 GCGGCGGGTGATGAGTGA 62.451 66.667 9.78 0.00 0.00 3.41
85 89 1.222113 GGAGAAAGCCGAGGGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
86 90 0.176910 GAGGAGAAAGCCGAGGGAAG 59.823 60.000 0.00 0.00 0.00 3.46
87 91 1.605058 CGAGGAGAAAGCCGAGGGAA 61.605 60.000 0.00 0.00 0.00 3.97
94 98 2.815647 CCGCACGAGGAGAAAGCC 60.816 66.667 0.00 0.00 0.00 4.35
107 111 2.442458 TATCTACCCCGCACCGCA 60.442 61.111 0.00 0.00 0.00 5.69
108 112 2.143594 CTCTATCTACCCCGCACCGC 62.144 65.000 0.00 0.00 0.00 5.68
110 114 2.161030 CTACTCTATCTACCCCGCACC 58.839 57.143 0.00 0.00 0.00 5.01
129 133 7.784037 TGTCTATCTACTCTCGAAACTACTCT 58.216 38.462 0.00 0.00 0.00 3.24
130 134 7.922278 TCTGTCTATCTACTCTCGAAACTACTC 59.078 40.741 0.00 0.00 0.00 2.59
131 135 7.784037 TCTGTCTATCTACTCTCGAAACTACT 58.216 38.462 0.00 0.00 0.00 2.57
132 136 7.707893 ACTCTGTCTATCTACTCTCGAAACTAC 59.292 40.741 0.00 0.00 0.00 2.73
133 137 7.784037 ACTCTGTCTATCTACTCTCGAAACTA 58.216 38.462 0.00 0.00 0.00 2.24
134 138 6.646267 ACTCTGTCTATCTACTCTCGAAACT 58.354 40.000 0.00 0.00 0.00 2.66
135 139 6.913873 ACTCTGTCTATCTACTCTCGAAAC 57.086 41.667 0.00 0.00 0.00 2.78
136 140 8.009622 TCTACTCTGTCTATCTACTCTCGAAA 57.990 38.462 0.00 0.00 0.00 3.46
137 141 7.585579 TCTACTCTGTCTATCTACTCTCGAA 57.414 40.000 0.00 0.00 0.00 3.71
138 142 7.361457 CGATCTACTCTGTCTATCTACTCTCGA 60.361 44.444 0.00 0.00 0.00 4.04
139 143 6.745907 CGATCTACTCTGTCTATCTACTCTCG 59.254 46.154 0.00 0.00 0.00 4.04
140 144 7.823665 TCGATCTACTCTGTCTATCTACTCTC 58.176 42.308 0.00 0.00 0.00 3.20
212 221 2.355481 GGACACGGTCACACGGAC 60.355 66.667 6.41 0.00 46.20 4.79
213 222 3.968568 CGGACACGGTCACACGGA 61.969 66.667 6.41 0.00 38.39 4.69
258 272 2.267324 GAGGCAGACCCAGTCAGC 59.733 66.667 3.75 3.75 42.87 4.26
264 278 1.690633 GGAGATGGAGGCAGACCCA 60.691 63.158 0.00 0.00 36.11 4.51
328 342 2.827921 CACTTTCCATTTCCCAGGGAAG 59.172 50.000 20.90 10.58 43.06 3.46
343 357 1.157585 GGCGAGGAAGGAACACTTTC 58.842 55.000 0.00 0.00 40.21 2.62
382 396 6.786967 AATAAAGAAGCCGAGAAGGTAGTA 57.213 37.500 0.00 0.00 43.70 1.82
384 398 6.986904 AAAATAAAGAAGCCGAGAAGGTAG 57.013 37.500 0.00 0.00 43.70 3.18
424 442 4.285260 GTCAGGGGAAACAAACTCCTAGTA 59.715 45.833 0.00 0.00 35.88 1.82
436 454 5.337250 GGTCAAATTAATGGTCAGGGGAAAC 60.337 44.000 0.00 0.00 0.00 2.78
437 455 4.775253 GGTCAAATTAATGGTCAGGGGAAA 59.225 41.667 0.00 0.00 0.00 3.13
440 458 3.701040 CTGGTCAAATTAATGGTCAGGGG 59.299 47.826 0.00 0.00 0.00 4.79
472 501 1.526887 CTGCGAGATTTAGGGGGCA 59.473 57.895 0.00 0.00 0.00 5.36
496 538 5.799681 AAATAAAATGCGAGCCCAATTTG 57.200 34.783 0.00 0.00 0.00 2.32
536 578 9.028284 AGTACCAGTATGCTACTAGTGTTTTTA 57.972 33.333 5.39 0.00 37.23 1.52
551 593 7.333672 GGAGGAAAACAAAGTAGTACCAGTATG 59.666 40.741 0.00 0.00 0.00 2.39
553 595 6.239686 GGGAGGAAAACAAAGTAGTACCAGTA 60.240 42.308 0.00 0.00 0.00 2.74
554 596 5.455755 GGGAGGAAAACAAAGTAGTACCAGT 60.456 44.000 0.00 0.00 0.00 4.00
556 598 4.412858 TGGGAGGAAAACAAAGTAGTACCA 59.587 41.667 0.00 0.00 0.00 3.25
557 599 4.976864 TGGGAGGAAAACAAAGTAGTACC 58.023 43.478 0.00 0.00 0.00 3.34
570 630 5.184711 GCATGCAATTTTATTGGGAGGAAA 58.815 37.500 14.21 0.00 0.00 3.13
577 637 6.256912 ACAAAAGGCATGCAATTTTATTGG 57.743 33.333 24.10 17.14 0.00 3.16
591 651 8.987890 GCTTTAATCAAGATAAAACAAAAGGCA 58.012 29.630 0.00 0.00 33.80 4.75
645 707 0.468029 GAGCTCTCCCTCCCTCTCTG 60.468 65.000 6.43 0.00 0.00 3.35
652 714 2.185608 GCGTTGAGCTCTCCCTCC 59.814 66.667 16.19 0.00 44.04 4.30
663 725 1.757118 CTGGAGGAGGATAAGCGTTGA 59.243 52.381 0.00 0.00 0.00 3.18
664 726 1.808133 GCTGGAGGAGGATAAGCGTTG 60.808 57.143 0.00 0.00 0.00 4.10
665 727 0.466124 GCTGGAGGAGGATAAGCGTT 59.534 55.000 0.00 0.00 0.00 4.84
668 730 0.032815 GTCGCTGGAGGAGGATAAGC 59.967 60.000 0.00 0.00 0.00 3.09
672 738 2.444895 GGGTCGCTGGAGGAGGAT 60.445 66.667 0.00 0.00 0.00 3.24
694 761 0.772124 TCCCCTGGACTTTCTTGGCT 60.772 55.000 0.00 0.00 0.00 4.75
734 801 3.225940 CCTCTTTTTCCCACTGCTTTCT 58.774 45.455 0.00 0.00 0.00 2.52
735 802 2.288457 GCCTCTTTTTCCCACTGCTTTC 60.288 50.000 0.00 0.00 0.00 2.62
739 806 1.866853 CGGCCTCTTTTTCCCACTGC 61.867 60.000 0.00 0.00 0.00 4.40
770 838 2.101582 CCACGGGAGAAATAGTGAGAGG 59.898 54.545 0.00 0.00 36.79 3.69
909 989 1.420138 AGAAGGCGTGGAAGGAAGAAA 59.580 47.619 0.00 0.00 0.00 2.52
953 1038 2.425312 GAGATCCGAGAAGACTGAGCAA 59.575 50.000 0.00 0.00 0.00 3.91
1103 1188 3.330720 GTGGGGTGGGGAGGTCTG 61.331 72.222 0.00 0.00 0.00 3.51
1343 1449 9.083422 TCACTGATCCATTTTGGTTTACATTTA 57.917 29.630 0.00 0.00 39.03 1.40
1354 1460 8.396390 CAAGATAGAGTTCACTGATCCATTTTG 58.604 37.037 0.00 0.00 0.00 2.44
1444 1550 8.276477 GCTCCTATATTAGTATACAGAGGGAGT 58.724 40.741 5.50 0.00 35.12 3.85
1445 1551 8.275758 TGCTCCTATATTAGTATACAGAGGGAG 58.724 40.741 5.50 12.09 35.43 4.30
1446 1552 8.171337 TGCTCCTATATTAGTATACAGAGGGA 57.829 38.462 5.50 2.86 0.00 4.20
1447 1553 9.427821 AATGCTCCTATATTAGTATACAGAGGG 57.572 37.037 5.50 0.00 0.00 4.30
1475 1581 9.733219 GCGTTTAGATCACTAAAGTAGTAATCT 57.267 33.333 6.37 6.37 44.17 2.40
1476 1582 9.733219 AGCGTTTAGATCACTAAAGTAGTAATC 57.267 33.333 0.00 0.00 45.42 1.75
1477 1583 9.733219 GAGCGTTTAGATCACTAAAGTAGTAAT 57.267 33.333 0.00 0.00 45.42 1.89
1478 1584 8.954350 AGAGCGTTTAGATCACTAAAGTAGTAA 58.046 33.333 0.00 0.00 45.42 2.24
1479 1585 8.503458 AGAGCGTTTAGATCACTAAAGTAGTA 57.497 34.615 0.00 0.00 45.42 1.82
1480 1586 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
1481 1587 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
1496 1602 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1497 1603 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1498 1604 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1499 1605 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1500 1606 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1509 1615 9.931698 TTATCTGATACTCCCTCTGTAAACTAA 57.068 33.333 0.00 0.00 0.00 2.24
1510 1616 9.352191 GTTATCTGATACTCCCTCTGTAAACTA 57.648 37.037 0.00 0.00 0.00 2.24
1511 1617 7.839705 TGTTATCTGATACTCCCTCTGTAAACT 59.160 37.037 0.00 0.00 0.00 2.66
1512 1618 7.921745 GTGTTATCTGATACTCCCTCTGTAAAC 59.078 40.741 0.00 0.00 0.00 2.01
1513 1619 7.201794 CGTGTTATCTGATACTCCCTCTGTAAA 60.202 40.741 0.00 0.00 0.00 2.01
1514 1620 6.262496 CGTGTTATCTGATACTCCCTCTGTAA 59.738 42.308 0.00 0.00 0.00 2.41
1515 1621 5.763698 CGTGTTATCTGATACTCCCTCTGTA 59.236 44.000 0.00 0.00 0.00 2.74
1516 1622 4.580995 CGTGTTATCTGATACTCCCTCTGT 59.419 45.833 0.00 0.00 0.00 3.41
1517 1623 4.822350 TCGTGTTATCTGATACTCCCTCTG 59.178 45.833 0.00 0.00 0.00 3.35
1518 1624 4.822896 GTCGTGTTATCTGATACTCCCTCT 59.177 45.833 0.00 0.00 0.00 3.69
1519 1625 4.822896 AGTCGTGTTATCTGATACTCCCTC 59.177 45.833 0.00 0.00 0.00 4.30
1520 1626 4.794334 AGTCGTGTTATCTGATACTCCCT 58.206 43.478 0.00 0.00 0.00 4.20
1521 1627 6.349445 CCATAGTCGTGTTATCTGATACTCCC 60.349 46.154 0.00 0.00 0.00 4.30
1522 1628 6.430308 TCCATAGTCGTGTTATCTGATACTCC 59.570 42.308 0.00 0.00 0.00 3.85
1523 1629 7.173562 AGTCCATAGTCGTGTTATCTGATACTC 59.826 40.741 0.00 0.00 0.00 2.59
1524 1630 6.999272 AGTCCATAGTCGTGTTATCTGATACT 59.001 38.462 0.00 0.00 0.00 2.12
1525 1631 7.204496 AGTCCATAGTCGTGTTATCTGATAC 57.796 40.000 0.00 0.00 0.00 2.24
1527 1633 9.688091 ATATAGTCCATAGTCGTGTTATCTGAT 57.312 33.333 0.00 0.00 0.00 2.90
1632 1739 8.991243 AGTTGTACTACAGCGACAATTAATAA 57.009 30.769 10.09 0.00 35.65 1.40
1648 1755 4.684877 TCAGCGACAACAAAGTTGTACTA 58.315 39.130 14.74 4.10 41.31 1.82
1649 1756 3.527533 TCAGCGACAACAAAGTTGTACT 58.472 40.909 14.74 12.33 41.31 2.73
1650 1757 3.936902 TCAGCGACAACAAAGTTGTAC 57.063 42.857 14.74 10.50 41.31 2.90
1651 1758 5.493133 AAATCAGCGACAACAAAGTTGTA 57.507 34.783 14.74 0.77 41.31 2.41
1652 1759 4.370364 AAATCAGCGACAACAAAGTTGT 57.630 36.364 14.68 14.68 44.72 3.32
1653 1760 5.510671 AGTAAATCAGCGACAACAAAGTTG 58.489 37.500 8.24 8.24 0.00 3.16
1654 1761 5.751243 AGTAAATCAGCGACAACAAAGTT 57.249 34.783 0.00 0.00 0.00 2.66
1655 1762 5.756347 TGTAGTAAATCAGCGACAACAAAGT 59.244 36.000 0.00 0.00 0.00 2.66
1656 1763 6.223138 TGTAGTAAATCAGCGACAACAAAG 57.777 37.500 0.00 0.00 0.00 2.77
1657 1764 6.259167 AGTTGTAGTAAATCAGCGACAACAAA 59.741 34.615 17.74 0.00 45.70 2.83
1658 1765 5.756347 AGTTGTAGTAAATCAGCGACAACAA 59.244 36.000 17.74 0.00 45.70 2.83
1659 1766 5.294356 AGTTGTAGTAAATCAGCGACAACA 58.706 37.500 17.74 0.00 45.70 3.33
1660 1767 5.840940 AGTTGTAGTAAATCAGCGACAAC 57.159 39.130 10.95 10.95 44.36 3.32
1661 1768 6.854496 AAAGTTGTAGTAAATCAGCGACAA 57.146 33.333 0.00 0.00 0.00 3.18
1662 1769 9.079833 GTATAAAGTTGTAGTAAATCAGCGACA 57.920 33.333 0.00 0.00 0.00 4.35
1663 1770 8.538039 GGTATAAAGTTGTAGTAAATCAGCGAC 58.462 37.037 0.00 0.00 0.00 5.19
1664 1771 8.472413 AGGTATAAAGTTGTAGTAAATCAGCGA 58.528 33.333 0.00 0.00 0.00 4.93
1665 1772 8.644318 AGGTATAAAGTTGTAGTAAATCAGCG 57.356 34.615 0.00 0.00 0.00 5.18
1674 1781 9.953565 TTGCTGATTTAGGTATAAAGTTGTAGT 57.046 29.630 0.00 0.00 34.44 2.73
1676 1783 9.727859 TGTTGCTGATTTAGGTATAAAGTTGTA 57.272 29.630 0.00 0.00 34.44 2.41
1677 1784 8.630054 TGTTGCTGATTTAGGTATAAAGTTGT 57.370 30.769 0.00 0.00 34.44 3.32
1687 1794 9.420118 TCCATATTAATTGTTGCTGATTTAGGT 57.580 29.630 0.00 0.00 0.00 3.08
1691 1798 8.084073 CGGATCCATATTAATTGTTGCTGATTT 58.916 33.333 13.41 0.00 0.00 2.17
1692 1799 7.448161 TCGGATCCATATTAATTGTTGCTGATT 59.552 33.333 13.41 0.00 0.00 2.57
1693 1800 6.942005 TCGGATCCATATTAATTGTTGCTGAT 59.058 34.615 13.41 0.00 0.00 2.90
1694 1801 6.295249 TCGGATCCATATTAATTGTTGCTGA 58.705 36.000 13.41 0.00 0.00 4.26
1695 1802 6.348786 CCTCGGATCCATATTAATTGTTGCTG 60.349 42.308 13.41 0.00 0.00 4.41
1696 1803 5.707298 CCTCGGATCCATATTAATTGTTGCT 59.293 40.000 13.41 0.00 0.00 3.91
1697 1804 5.106157 CCCTCGGATCCATATTAATTGTTGC 60.106 44.000 13.41 0.00 0.00 4.17
1698 1805 6.237901 TCCCTCGGATCCATATTAATTGTTG 58.762 40.000 13.41 0.00 0.00 3.33
1699 1806 6.044404 ACTCCCTCGGATCCATATTAATTGTT 59.956 38.462 13.41 0.00 0.00 2.83
1700 1807 5.548056 ACTCCCTCGGATCCATATTAATTGT 59.452 40.000 13.41 0.00 0.00 2.71
1701 1808 6.054860 ACTCCCTCGGATCCATATTAATTG 57.945 41.667 13.41 0.00 0.00 2.32
1702 1809 7.623677 TCATACTCCCTCGGATCCATATTAATT 59.376 37.037 13.41 0.00 0.00 1.40
1703 1810 7.132805 TCATACTCCCTCGGATCCATATTAAT 58.867 38.462 13.41 0.00 0.00 1.40
1704 1811 6.499436 TCATACTCCCTCGGATCCATATTAA 58.501 40.000 13.41 0.00 0.00 1.40
1705 1812 6.087276 TCATACTCCCTCGGATCCATATTA 57.913 41.667 13.41 0.00 0.00 0.98
1706 1813 4.947883 TCATACTCCCTCGGATCCATATT 58.052 43.478 13.41 0.00 0.00 1.28
1707 1814 4.609866 TCATACTCCCTCGGATCCATAT 57.390 45.455 13.41 0.00 0.00 1.78
1708 1815 4.609866 ATCATACTCCCTCGGATCCATA 57.390 45.455 13.41 0.00 0.00 2.74
1709 1816 3.481559 ATCATACTCCCTCGGATCCAT 57.518 47.619 13.41 0.00 0.00 3.41
1710 1817 3.260269 AATCATACTCCCTCGGATCCA 57.740 47.619 13.41 0.00 0.00 3.41
1711 1818 5.665459 CATAAATCATACTCCCTCGGATCC 58.335 45.833 0.00 0.00 0.00 3.36
1712 1819 5.112686 GCATAAATCATACTCCCTCGGATC 58.887 45.833 0.00 0.00 0.00 3.36
1713 1820 4.080863 GGCATAAATCATACTCCCTCGGAT 60.081 45.833 0.00 0.00 0.00 4.18
1714 1821 3.260884 GGCATAAATCATACTCCCTCGGA 59.739 47.826 0.00 0.00 0.00 4.55
1715 1822 3.600388 GGCATAAATCATACTCCCTCGG 58.400 50.000 0.00 0.00 0.00 4.63
1716 1823 3.600388 GGGCATAAATCATACTCCCTCG 58.400 50.000 0.00 0.00 0.00 4.63
1717 1824 3.589288 AGGGGCATAAATCATACTCCCTC 59.411 47.826 0.00 0.00 39.11 4.30
1718 1825 3.331889 CAGGGGCATAAATCATACTCCCT 59.668 47.826 0.00 0.00 43.68 4.20
1719 1826 3.562176 CCAGGGGCATAAATCATACTCCC 60.562 52.174 0.00 0.00 0.00 4.30
1720 1827 3.074538 ACCAGGGGCATAAATCATACTCC 59.925 47.826 0.00 0.00 0.00 3.85
1721 1828 4.373156 ACCAGGGGCATAAATCATACTC 57.627 45.455 0.00 0.00 0.00 2.59
1722 1829 4.814224 AACCAGGGGCATAAATCATACT 57.186 40.909 0.00 0.00 0.00 2.12
1723 1830 5.010282 CCTAACCAGGGGCATAAATCATAC 58.990 45.833 0.00 0.00 38.41 2.39
1724 1831 5.255397 CCTAACCAGGGGCATAAATCATA 57.745 43.478 0.00 0.00 38.41 2.15
1725 1832 4.118168 CCTAACCAGGGGCATAAATCAT 57.882 45.455 0.00 0.00 38.41 2.45
1726 1833 3.593442 CCTAACCAGGGGCATAAATCA 57.407 47.619 0.00 0.00 38.41 2.57
1790 2017 6.482308 ACATCAGGTACACTTCTGTTACAAAC 59.518 38.462 0.00 0.00 33.13 2.93
1804 2032 6.374333 GCTTTGATAGGAAAACATCAGGTACA 59.626 38.462 0.00 0.00 32.96 2.90
1864 2092 5.324409 TGCCCAAGATTACAAGAAGACAAT 58.676 37.500 0.00 0.00 0.00 2.71
2278 2509 7.992608 AGTTATCATAAACACATGGCATACTGA 59.007 33.333 0.00 0.00 0.00 3.41
2332 2576 1.630878 ACCACATCTTCAGAGGGTTCC 59.369 52.381 0.00 0.00 0.00 3.62
2345 2589 7.169982 CGATTCTATAACTTTCTGGACCACATC 59.830 40.741 0.00 0.00 0.00 3.06
2368 2708 2.496899 AATCCAAGTGGTGCTTCGAT 57.503 45.000 0.00 0.00 36.76 3.59
2370 2710 1.879380 TGAAATCCAAGTGGTGCTTCG 59.121 47.619 0.00 0.00 34.69 3.79
2375 2715 4.987408 TGCATATGAAATCCAAGTGGTG 57.013 40.909 6.97 0.00 36.34 4.17
2402 2742 6.735678 TTGAAAGCTGATAAACGATAGCAA 57.264 33.333 0.00 0.00 38.59 3.91
2403 2743 6.735678 TTTGAAAGCTGATAAACGATAGCA 57.264 33.333 0.00 0.00 38.59 3.49
2404 2744 7.910162 TGATTTTGAAAGCTGATAAACGATAGC 59.090 33.333 0.00 0.00 42.67 2.97
2405 2745 9.941664 ATGATTTTGAAAGCTGATAAACGATAG 57.058 29.630 0.00 0.00 46.19 2.08
2406 2746 9.720667 CATGATTTTGAAAGCTGATAAACGATA 57.279 29.630 0.00 0.00 0.00 2.92
2424 2764 9.211485 CAAAGGAACAATTTAGCTCATGATTTT 57.789 29.630 0.00 0.00 0.00 1.82
2454 2794 8.685838 ACAGTTAAGTAAGCATTGAAGGTTTA 57.314 30.769 0.00 0.00 0.00 2.01
2471 2811 6.512297 ACCCAATAAGCAACAAACAGTTAAG 58.488 36.000 0.00 0.00 38.74 1.85
2496 2836 9.743057 CTTCAAACATTACCAACAACAATCTTA 57.257 29.630 0.00 0.00 0.00 2.10
2503 2843 5.897050 TCACCTTCAAACATTACCAACAAC 58.103 37.500 0.00 0.00 0.00 3.32
2512 2852 9.533831 AATAGTATTCCTTCACCTTCAAACATT 57.466 29.630 0.00 0.00 0.00 2.71
2545 2885 4.971924 AGGATAGGGCTAACAAGAGTTGAT 59.028 41.667 0.00 0.00 38.69 2.57
2548 2888 7.453141 AATAAGGATAGGGCTAACAAGAGTT 57.547 36.000 0.00 0.00 41.74 3.01
2576 2916 2.076863 AGCGCCAAGAAGACAATGTAC 58.923 47.619 2.29 0.00 0.00 2.90
2594 2934 7.466050 GCAAAGGATACACTAACTGTTCATAGC 60.466 40.741 0.00 0.00 41.41 2.97
2625 2965 5.107875 CGAAGCTGCAAACAATTCCTAAAAC 60.108 40.000 1.02 0.00 0.00 2.43
2677 3017 0.321210 CACCAGCGGTCACCATAACA 60.321 55.000 0.00 0.00 31.02 2.41
2712 3052 8.783093 TGTGATAAACCAGATGAAAAGTAACAG 58.217 33.333 0.00 0.00 0.00 3.16
2713 3053 8.684386 TGTGATAAACCAGATGAAAAGTAACA 57.316 30.769 0.00 0.00 0.00 2.41
2714 3054 7.750903 GCTGTGATAAACCAGATGAAAAGTAAC 59.249 37.037 0.00 0.00 0.00 2.50
2759 3099 6.016024 AGTCTGACAGCTAAATGATGCAAAAA 60.016 34.615 10.88 0.00 35.06 1.94
2805 3152 9.605275 TTCATCATAGAACTAAAACAGGAGATG 57.395 33.333 0.00 0.00 0.00 2.90
2828 3175 6.195600 ACAGGGAAGTAAACAGGTATTTCA 57.804 37.500 0.00 0.00 0.00 2.69
2829 3176 7.282450 CCATACAGGGAAGTAAACAGGTATTTC 59.718 40.741 0.00 0.00 0.00 2.17
2830 3177 7.116736 CCATACAGGGAAGTAAACAGGTATTT 58.883 38.462 0.00 0.00 0.00 1.40
2832 3179 5.397559 GCCATACAGGGAAGTAAACAGGTAT 60.398 44.000 0.00 0.00 38.09 2.73
2839 3186 2.576191 AGCAGCCATACAGGGAAGTAAA 59.424 45.455 0.00 0.00 38.09 2.01
2855 3202 7.581476 TGTAAAACAAGATTTAGTGTAGCAGC 58.419 34.615 0.00 0.00 0.00 5.25
2993 3388 6.038161 TGAAGGAATTGAAATAGTATGGTGCG 59.962 38.462 0.00 0.00 0.00 5.34
3002 3397 8.689061 TGGAATGACATGAAGGAATTGAAATAG 58.311 33.333 0.00 0.00 0.00 1.73
3126 3523 7.101054 TGCACTCATAAGTTAAGTACGGAAAT 58.899 34.615 0.00 0.00 31.71 2.17
3132 3529 9.367444 AGTACATTGCACTCATAAGTTAAGTAC 57.633 33.333 0.00 0.00 31.71 2.73
3139 3536 9.672673 AATCTAAAGTACATTGCACTCATAAGT 57.327 29.630 0.00 0.00 35.60 2.24
3189 3589 9.941325 ACATATAGAGATCATAAAGAGCAAAGG 57.059 33.333 0.00 0.00 34.30 3.11
3211 3612 8.679100 CCGTATAAATTTTTCTTGGACCACATA 58.321 33.333 0.00 0.00 0.00 2.29
3236 3637 6.295249 TCCAAAAGGAAAAATCAATTGACCC 58.705 36.000 11.07 7.33 0.00 4.46
3239 3640 8.798859 TTGTTCCAAAAGGAAAAATCAATTGA 57.201 26.923 11.26 11.26 0.00 2.57
3240 3641 9.453325 CATTGTTCCAAAAGGAAAAATCAATTG 57.547 29.630 9.21 0.00 34.63 2.32
3241 3642 9.406113 TCATTGTTCCAAAAGGAAAAATCAATT 57.594 25.926 9.21 0.00 34.63 2.32
3242 3643 8.977267 TCATTGTTCCAAAAGGAAAAATCAAT 57.023 26.923 9.21 7.17 34.63 2.57
3243 3644 7.012232 GCTCATTGTTCCAAAAGGAAAAATCAA 59.988 33.333 9.21 5.40 34.63 2.57
3244 3645 6.482973 GCTCATTGTTCCAAAAGGAAAAATCA 59.517 34.615 9.21 0.00 34.63 2.57
3245 3646 6.707608 AGCTCATTGTTCCAAAAGGAAAAATC 59.292 34.615 9.21 0.97 34.63 2.17
3246 3647 6.594744 AGCTCATTGTTCCAAAAGGAAAAAT 58.405 32.000 6.81 6.81 36.56 1.82
3247 3648 5.988287 AGCTCATTGTTCCAAAAGGAAAAA 58.012 33.333 2.57 2.57 30.83 1.94
3248 3649 5.453198 GGAGCTCATTGTTCCAAAAGGAAAA 60.453 40.000 17.19 0.00 44.32 2.29
3249 3650 4.039124 GGAGCTCATTGTTCCAAAAGGAAA 59.961 41.667 17.19 0.00 44.32 3.13
3250 3651 3.573967 GGAGCTCATTGTTCCAAAAGGAA 59.426 43.478 17.19 0.00 44.32 3.36
3251 3652 3.157087 GGAGCTCATTGTTCCAAAAGGA 58.843 45.455 17.19 0.00 44.32 3.36
3252 3653 2.232208 GGGAGCTCATTGTTCCAAAAGG 59.768 50.000 17.19 0.00 46.38 3.11
3253 3654 3.160269 AGGGAGCTCATTGTTCCAAAAG 58.840 45.455 17.19 0.00 46.38 2.27
3254 3655 3.243359 AGGGAGCTCATTGTTCCAAAA 57.757 42.857 17.19 0.00 46.38 2.44
3255 3656 2.892852 CAAGGGAGCTCATTGTTCCAAA 59.107 45.455 17.19 0.00 46.38 3.28
3256 3657 2.158475 ACAAGGGAGCTCATTGTTCCAA 60.158 45.455 23.57 0.00 46.38 3.53
3257 3658 1.425066 ACAAGGGAGCTCATTGTTCCA 59.575 47.619 23.57 0.00 46.38 3.53
3258 3659 2.087646 GACAAGGGAGCTCATTGTTCC 58.912 52.381 27.47 17.16 44.20 3.62
3259 3660 1.734465 CGACAAGGGAGCTCATTGTTC 59.266 52.381 27.47 20.83 37.29 3.18
3260 3661 1.347707 TCGACAAGGGAGCTCATTGTT 59.652 47.619 27.47 16.60 37.29 2.83
3261 3662 0.976641 TCGACAAGGGAGCTCATTGT 59.023 50.000 27.26 27.26 39.76 2.71
3262 3663 2.322355 ATCGACAAGGGAGCTCATTG 57.678 50.000 22.52 22.52 0.00 2.82
3263 3664 3.054802 AGAAATCGACAAGGGAGCTCATT 60.055 43.478 17.19 6.83 0.00 2.57
3264 3665 2.503356 AGAAATCGACAAGGGAGCTCAT 59.497 45.455 17.19 0.00 0.00 2.90
3265 3666 1.902508 AGAAATCGACAAGGGAGCTCA 59.097 47.619 17.19 0.00 0.00 4.26
3266 3667 2.682155 AGAAATCGACAAGGGAGCTC 57.318 50.000 4.71 4.71 0.00 4.09
3267 3668 4.762289 AATAGAAATCGACAAGGGAGCT 57.238 40.909 0.00 0.00 0.00 4.09
3268 3669 7.603651 TCTATAATAGAAATCGACAAGGGAGC 58.396 38.462 0.00 0.00 0.00 4.70
3269 3670 9.982651 TTTCTATAATAGAAATCGACAAGGGAG 57.017 33.333 0.00 0.00 46.62 4.30
3298 3699 9.202273 CCCAAACAAATTAAATTTCAATCGAGA 57.798 29.630 0.00 0.00 0.00 4.04
3299 3700 9.202273 TCCCAAACAAATTAAATTTCAATCGAG 57.798 29.630 0.00 0.00 0.00 4.04
3303 3704 9.075678 TGCATCCCAAACAAATTAAATTTCAAT 57.924 25.926 0.00 0.00 0.00 2.57
3342 3743 6.164876 TCCAACCAATCTGCATTTTTATGTG 58.835 36.000 0.00 0.00 0.00 3.21
3343 3744 6.211184 TCTCCAACCAATCTGCATTTTTATGT 59.789 34.615 0.00 0.00 0.00 2.29
3345 3746 6.855763 TCTCCAACCAATCTGCATTTTTAT 57.144 33.333 0.00 0.00 0.00 1.40
3364 3765 6.382608 GTTATTTTCTTTCAGCACCTTCTCC 58.617 40.000 0.00 0.00 0.00 3.71
3430 3831 3.956848 GCTTGGGAATAAAAGCTCCAGAT 59.043 43.478 0.29 0.00 44.33 2.90
3481 3882 2.503061 CCATGCGAGTGAGGGAGG 59.497 66.667 0.00 0.00 0.00 4.30
3485 3886 2.202987 GAGCCCATGCGAGTGAGG 60.203 66.667 0.00 0.00 44.33 3.86
3488 3889 1.088340 CAAGAGAGCCCATGCGAGTG 61.088 60.000 0.00 0.00 44.33 3.51
3489 3890 1.220206 CAAGAGAGCCCATGCGAGT 59.780 57.895 0.00 0.00 44.33 4.18
3490 3891 0.461548 TACAAGAGAGCCCATGCGAG 59.538 55.000 0.00 0.00 44.33 5.03
3491 3892 0.175760 GTACAAGAGAGCCCATGCGA 59.824 55.000 0.00 0.00 44.33 5.10
3492 3893 0.108186 TGTACAAGAGAGCCCATGCG 60.108 55.000 0.00 0.00 44.33 4.73
3493 3894 1.373570 GTGTACAAGAGAGCCCATGC 58.626 55.000 0.00 0.00 37.95 4.06
3524 3925 2.050836 AACTCCATGTCGGGTGTGCA 62.051 55.000 0.00 0.00 35.01 4.57
3531 3932 1.135315 CAAATGCCAACTCCATGTCGG 60.135 52.381 0.00 0.00 0.00 4.79
3533 3934 3.665745 AACAAATGCCAACTCCATGTC 57.334 42.857 0.00 0.00 0.00 3.06
3656 4060 4.805192 AGCACTAACAAACAAATGCAAGTG 59.195 37.500 0.00 0.00 38.46 3.16
3724 4138 6.195244 GCATAAAACATTATGTCTGCACTTCG 59.805 38.462 0.00 0.00 37.26 3.79
3750 4165 5.695851 ATTCAGGTGTGACTCATTGTTTC 57.304 39.130 0.00 0.00 30.10 2.78
3776 4191 4.705023 ACTGTAACCATGATTTAAGGTGGC 59.295 41.667 0.00 0.00 35.42 5.01
3796 4211 6.483640 GCATAATAACCAGTCCTCCTAAACTG 59.516 42.308 0.00 0.00 42.04 3.16
3819 4236 9.979578 AGTCATTTTTGTATCATTTAGTTTGCA 57.020 25.926 0.00 0.00 0.00 4.08
3848 4292 9.075519 ACGCATTCACATTAAAATTGTATTCTG 57.924 29.630 0.00 0.00 0.00 3.02
4045 4492 9.349713 AGTCTAACTGAATTTGACAAACCATTA 57.650 29.630 1.94 5.34 43.20 1.90
4062 4509 5.843673 TTATGAGCAGGAGAGTCTAACTG 57.156 43.478 16.31 16.31 0.00 3.16
4104 4552 2.462456 TCTGCTAGAGTTGTTGCCAG 57.538 50.000 0.00 0.00 0.00 4.85
4109 4557 3.391296 TCAACCCTTCTGCTAGAGTTGTT 59.609 43.478 0.00 0.00 32.79 2.83
4127 4581 4.751098 TGTAGTATGACCCAAAACGTCAAC 59.249 41.667 0.00 0.00 43.16 3.18
4132 4586 5.927689 TGTTAGTGTAGTATGACCCAAAACG 59.072 40.000 0.00 0.00 0.00 3.60
4293 4750 5.394443 GCAAATGAAAATCACTAGCATCCCA 60.394 40.000 0.00 0.00 0.00 4.37
4323 4781 1.264749 AAGCGAGGCTCATGGTGGTA 61.265 55.000 15.95 0.00 38.25 3.25
4326 4784 2.110967 CCAAGCGAGGCTCATGGTG 61.111 63.158 15.95 6.42 38.25 4.17
4327 4785 2.270205 CCAAGCGAGGCTCATGGT 59.730 61.111 15.95 1.47 38.25 3.55
4361 4819 0.178903 ACCTCCCTCACACCTGCTTA 60.179 55.000 0.00 0.00 0.00 3.09
4384 4842 4.207891 AGTTCAAACGATAGATGTGCCT 57.792 40.909 0.00 0.00 41.38 4.75
4437 4895 7.378181 TGAGTGATTTGGAAGGCTTATTTTTC 58.622 34.615 0.00 0.00 0.00 2.29
4449 4908 3.146066 CCGACCTTTGAGTGATTTGGAA 58.854 45.455 0.00 0.00 0.00 3.53
4461 4920 4.383173 ACCTGTTAGTTAACCGACCTTTG 58.617 43.478 0.88 0.00 35.37 2.77
4486 4945 5.048921 GCTTTTAAAACGCTCTCCTAAAGGT 60.049 40.000 12.35 0.00 36.34 3.50
4519 4978 0.469917 TGGGATTCGGGCTCATTCTC 59.530 55.000 0.00 0.00 0.00 2.87
4560 5019 0.627986 CTGGAGGCTGAAAGGGGAAT 59.372 55.000 0.00 0.00 0.00 3.01
4596 5055 1.031571 CGCTGCCCAATAAGAAGCCA 61.032 55.000 0.00 0.00 0.00 4.75
4598 5057 0.099436 CACGCTGCCCAATAAGAAGC 59.901 55.000 0.00 0.00 0.00 3.86
4602 5061 1.331756 GTCATCACGCTGCCCAATAAG 59.668 52.381 0.00 0.00 0.00 1.73
4607 5066 3.635191 TGGTCATCACGCTGCCCA 61.635 61.111 0.00 0.00 0.00 5.36
4640 5099 2.025226 TCTACGGACAGATCCTGTTCCT 60.025 50.000 0.82 0.00 45.44 3.36
4655 5114 1.136891 TGCATGATCACAGGTCTACGG 59.863 52.381 0.00 0.00 0.00 4.02
4657 5116 4.445453 TGATTGCATGATCACAGGTCTAC 58.555 43.478 0.00 0.00 31.35 2.59
4661 5120 6.971726 AATATTGATTGCATGATCACAGGT 57.028 33.333 0.00 0.00 35.86 4.00
4672 5131 9.598517 GGAGAAATAAACCAAATATTGATTGCA 57.401 29.630 0.00 0.00 0.00 4.08
4690 5149 7.060421 AGACAAAGGACAAAGTTGGAGAAATA 58.940 34.615 0.00 0.00 0.00 1.40
4699 5159 4.213482 GCGATGTAGACAAAGGACAAAGTT 59.787 41.667 0.00 0.00 0.00 2.66
4712 5172 4.148563 AGACACGATATGCGATGTAGAC 57.851 45.455 0.00 0.00 44.57 2.59
4751 5211 6.072342 TCAGGGAAAGAAAATAGTAAAACGGC 60.072 38.462 0.00 0.00 0.00 5.68
4759 5248 8.265055 TCGTCAATATCAGGGAAAGAAAATAGT 58.735 33.333 0.00 0.00 0.00 2.12
4809 5298 9.525007 CACGTGTCAGTCAAGTAAAAATATTAC 57.475 33.333 7.58 0.00 36.69 1.89
4815 5304 4.930405 TCACACGTGTCAGTCAAGTAAAAA 59.070 37.500 20.49 0.00 36.69 1.94
4816 5305 4.327898 GTCACACGTGTCAGTCAAGTAAAA 59.672 41.667 20.49 0.00 36.69 1.52
4819 5308 2.223641 GGTCACACGTGTCAGTCAAGTA 60.224 50.000 20.49 0.00 36.69 2.24
4821 5310 1.209128 GGTCACACGTGTCAGTCAAG 58.791 55.000 20.49 5.86 0.00 3.02
4822 5311 0.179094 GGGTCACACGTGTCAGTCAA 60.179 55.000 20.49 0.00 0.00 3.18
4833 5338 2.213499 CAAGACTTGACTGGGTCACAC 58.787 52.381 9.76 0.00 42.60 3.82
4837 5343 5.662674 AGTATACAAGACTTGACTGGGTC 57.337 43.478 21.95 5.53 0.00 4.46
4848 5354 9.708222 CACATCAAATGCTTAAGTATACAAGAC 57.292 33.333 6.48 0.00 0.00 3.01
4861 5367 2.783135 ACGTCTCCACATCAAATGCTT 58.217 42.857 0.00 0.00 0.00 3.91
4864 5370 4.747540 TTGAACGTCTCCACATCAAATG 57.252 40.909 0.00 0.00 29.45 2.32
4900 5406 7.335627 AGCACTGTATAGTACAAATTGCCTAA 58.664 34.615 0.00 0.00 38.66 2.69
4914 5420 7.595311 TGTATGAAACACAAGCACTGTATAG 57.405 36.000 0.00 0.00 36.10 1.31
4974 5480 8.801299 TCTAAAACCATTGCAAAAGATGACATA 58.199 29.630 1.71 0.00 0.00 2.29
4980 5486 9.729281 AATGAATCTAAAACCATTGCAAAAGAT 57.271 25.926 1.71 1.15 0.00 2.40
5006 5512 5.500234 AGATTAGCCATTTTCTGTGCAGTA 58.500 37.500 0.00 0.00 0.00 2.74
5051 5557 1.202639 TGAACTACAGGCACCACACAG 60.203 52.381 0.00 0.00 0.00 3.66
5231 5738 0.250038 CTACTCGCCACCCCATCATG 60.250 60.000 0.00 0.00 0.00 3.07
5331 5840 4.757149 GTGCAGGACAGGATATATGAAACC 59.243 45.833 0.00 0.00 0.00 3.27
5335 5844 4.655649 ACTTGTGCAGGACAGGATATATGA 59.344 41.667 11.36 0.00 35.23 2.15
5377 5886 5.713025 CATTCACTGGTCCAAAAGTATTGG 58.287 41.667 0.71 0.71 40.87 3.16
5455 5965 7.776107 TGATCAGATCTTGTAAGACTAACTGG 58.224 38.462 11.83 0.00 37.98 4.00
5473 5983 1.100510 GCAGCAGCCAATTGATCAGA 58.899 50.000 7.12 0.00 33.58 3.27
5674 6184 0.038744 CACCAAGGGGAGACATTGCT 59.961 55.000 0.00 0.00 38.05 3.91
5740 6250 5.008331 TCGTCTGAACAGTTATCTGGTAGT 58.992 41.667 5.80 0.00 42.23 2.73
5854 6364 5.823045 GTCTTCTTCTTTCAGTCCTCCAAAA 59.177 40.000 0.00 0.00 0.00 2.44
5857 6367 3.967326 TGTCTTCTTCTTTCAGTCCTCCA 59.033 43.478 0.00 0.00 0.00 3.86
5863 6373 3.879892 GCCTTGTGTCTTCTTCTTTCAGT 59.120 43.478 0.00 0.00 0.00 3.41
5869 6379 1.606737 GCGAGCCTTGTGTCTTCTTCT 60.607 52.381 0.00 0.00 0.00 2.85
5872 6382 1.004440 GGCGAGCCTTGTGTCTTCT 60.004 57.895 6.90 0.00 0.00 2.85
6025 6535 4.842531 TGAACTAATCCCAGCAGAATCA 57.157 40.909 0.00 0.00 0.00 2.57
6120 6630 3.091545 CACTACACCAATTGCCATTCCT 58.908 45.455 0.00 0.00 0.00 3.36
6139 6649 6.348458 GCTTTTTATTTTGCCCCAATTCTCAC 60.348 38.462 0.00 0.00 0.00 3.51
6165 6675 3.976701 GACACCACGGGGCTGGATG 62.977 68.421 1.73 0.00 37.90 3.51
6176 6686 3.364023 CGAACAGAGAATTACGACACCAC 59.636 47.826 0.00 0.00 0.00 4.16
6177 6687 3.571571 CGAACAGAGAATTACGACACCA 58.428 45.455 0.00 0.00 0.00 4.17
6178 6688 2.921754 CCGAACAGAGAATTACGACACC 59.078 50.000 0.00 0.00 0.00 4.16
6750 7260 6.921857 ACAGAACTCGATAAAGAAGAAAACGA 59.078 34.615 0.00 0.00 0.00 3.85
6751 7261 7.106663 ACAGAACTCGATAAAGAAGAAAACG 57.893 36.000 0.00 0.00 0.00 3.60
6796 7306 6.044682 ACAAATTCTTTGAAACCAGCAAGAG 58.955 36.000 6.61 0.00 43.26 2.85
6798 7308 6.667007 AACAAATTCTTTGAAACCAGCAAG 57.333 33.333 6.61 0.00 43.26 4.01
6805 7315 9.715123 CATGGGTTTTAACAAATTCTTTGAAAC 57.285 29.630 6.61 6.70 43.26 2.78
6810 7320 6.704050 CGACCATGGGTTTTAACAAATTCTTT 59.296 34.615 18.09 0.00 35.25 2.52
6826 7336 5.072741 AGGATCAAAATTATCGACCATGGG 58.927 41.667 18.09 0.00 0.00 4.00
6828 7338 7.442364 AGTGTAGGATCAAAATTATCGACCATG 59.558 37.037 0.00 0.00 0.00 3.66
6829 7339 7.442364 CAGTGTAGGATCAAAATTATCGACCAT 59.558 37.037 0.00 0.00 0.00 3.55
6830 7340 6.761242 CAGTGTAGGATCAAAATTATCGACCA 59.239 38.462 0.00 0.00 0.00 4.02
6835 7357 7.987458 TCCTGTCAGTGTAGGATCAAAATTATC 59.013 37.037 12.80 0.00 38.15 1.75
6839 7361 5.491982 GTCCTGTCAGTGTAGGATCAAAAT 58.508 41.667 17.71 0.00 44.39 1.82
6862 7384 4.275689 TCATGTTCAGTAAGCACTTGTTGG 59.724 41.667 0.00 0.00 30.46 3.77
6872 7394 4.627035 TCACGAGCATTCATGTTCAGTAAG 59.373 41.667 4.74 0.00 37.82 2.34
6913 7435 4.453478 TGCAACATGTTTTTCTTGCAAACA 59.547 33.333 16.21 1.44 44.53 2.83
6914 7436 4.967437 TGCAACATGTTTTTCTTGCAAAC 58.033 34.783 16.21 0.00 44.53 2.93
6918 7440 4.319694 GGGATTGCAACATGTTTTTCTTGC 60.320 41.667 8.77 9.71 39.60 4.01
6940 7463 9.912634 ACAACATTTATTCATTAGTTGAGTTGG 57.087 29.630 9.73 0.00 37.35 3.77
6957 7480 3.826524 TCAGAGGGCACAACAACATTTA 58.173 40.909 0.00 0.00 0.00 1.40
6985 7508 8.967664 ACTTAAAGAGTACAACAACATTACCA 57.032 30.769 0.00 0.00 36.65 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.