Multiple sequence alignment - TraesCS3B01G141200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G141200 chr3B 100.000 2280 0 0 669 2948 127852084 127854363 0.000000e+00 4211.0
1 TraesCS3B01G141200 chr3B 91.525 531 44 1 2417 2947 753267364 753267893 0.000000e+00 730.0
2 TraesCS3B01G141200 chr3B 100.000 132 0 0 1 132 127851416 127851547 8.160000e-61 244.0
3 TraesCS3B01G141200 chr3D 93.541 1285 47 12 707 1964 81689303 81690578 0.000000e+00 1881.0
4 TraesCS3B01G141200 chr3D 91.045 134 8 2 1 132 81687215 81687346 8.400000e-41 178.0
5 TraesCS3B01G141200 chr5D 84.820 942 109 18 1032 1953 64292464 64291537 0.000000e+00 917.0
6 TraesCS3B01G141200 chr5D 76.190 294 55 11 1237 1519 355076908 355077197 1.100000e-29 141.0
7 TraesCS3B01G141200 chr5D 76.370 292 49 15 1235 1516 354941544 354941825 3.960000e-29 139.0
8 TraesCS3B01G141200 chr5D 97.619 42 1 0 2104 2145 173980047 173980088 4.080000e-09 73.1
9 TraesCS3B01G141200 chr5B 84.509 936 123 11 1032 1953 65965283 65964356 0.000000e+00 905.0
10 TraesCS3B01G141200 chr5B 95.652 46 1 1 2101 2146 224628392 224628436 4.080000e-09 73.1
11 TraesCS3B01G141200 chr5A 84.345 939 120 14 1032 1953 54653165 54654093 0.000000e+00 894.0
12 TraesCS3B01G141200 chr5A 77.163 289 50 13 1236 1516 457086531 457086811 1.410000e-33 154.0
13 TraesCS3B01G141200 chr5A 77.665 197 36 8 1237 1429 457516624 457516432 2.400000e-21 113.0
14 TraesCS3B01G141200 chr5A 100.000 28 0 0 2183 2210 352399995 352400022 5.000000e-03 52.8
15 TraesCS3B01G141200 chr3A 96.055 507 17 1 1461 1964 95942458 95942964 0.000000e+00 822.0
16 TraesCS3B01G141200 chr3A 92.773 512 23 6 957 1468 95940800 95941297 0.000000e+00 728.0
17 TraesCS3B01G141200 chr3A 94.545 55 3 0 831 885 95940699 95940753 5.240000e-13 86.1
18 TraesCS3B01G141200 chr7B 92.803 528 37 1 2418 2944 707963136 707963663 0.000000e+00 763.0
19 TraesCS3B01G141200 chr6B 92.789 527 36 2 2421 2947 710910308 710910832 0.000000e+00 761.0
20 TraesCS3B01G141200 chr6B 91.477 528 43 2 2418 2944 678532971 678533497 0.000000e+00 725.0
21 TraesCS3B01G141200 chr6B 91.149 531 44 3 2415 2944 698091907 698092435 0.000000e+00 717.0
22 TraesCS3B01G141200 chr2D 91.902 531 40 3 2415 2944 575827113 575827641 0.000000e+00 739.0
23 TraesCS3B01G141200 chr2D 74.414 938 184 39 1039 1933 404889150 404890074 4.670000e-93 351.0
24 TraesCS3B01G141200 chr2B 91.493 529 44 1 2417 2945 421077218 421077745 0.000000e+00 726.0
25 TraesCS3B01G141200 chr2B 91.304 529 46 0 2417 2945 421079837 421080365 0.000000e+00 723.0
26 TraesCS3B01G141200 chr2B 73.561 938 192 39 1039 1933 479547135 479548059 1.030000e-79 307.0
27 TraesCS3B01G141200 chr2B 97.674 43 1 0 2104 2146 682910672 682910714 1.130000e-09 75.0
28 TraesCS3B01G141200 chr1D 91.337 531 44 2 2414 2944 1816133 1816661 0.000000e+00 725.0
29 TraesCS3B01G141200 chr1D 87.324 71 6 3 2084 2154 474886755 474886822 8.760000e-11 78.7
30 TraesCS3B01G141200 chr4A 88.889 63 5 2 2105 2165 594023195 594023257 3.150000e-10 76.8
31 TraesCS3B01G141200 chr4A 97.674 43 1 0 2104 2146 614877540 614877498 1.130000e-09 75.0
32 TraesCS3B01G141200 chr7A 97.619 42 1 0 2105 2146 37931548 37931507 4.080000e-09 73.1
33 TraesCS3B01G141200 chr2A 95.652 46 1 1 2101 2146 753770300 753770344 4.080000e-09 73.1
34 TraesCS3B01G141200 chr1A 97.619 42 1 0 2105 2146 578925803 578925762 4.080000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G141200 chr3B 127851416 127854363 2947 False 2227.500000 4211 100.000000 1 2948 2 chr3B.!!$F2 2947
1 TraesCS3B01G141200 chr3B 753267364 753267893 529 False 730.000000 730 91.525000 2417 2947 1 chr3B.!!$F1 530
2 TraesCS3B01G141200 chr3D 81687215 81690578 3363 False 1029.500000 1881 92.293000 1 1964 2 chr3D.!!$F1 1963
3 TraesCS3B01G141200 chr5D 64291537 64292464 927 True 917.000000 917 84.820000 1032 1953 1 chr5D.!!$R1 921
4 TraesCS3B01G141200 chr5B 65964356 65965283 927 True 905.000000 905 84.509000 1032 1953 1 chr5B.!!$R1 921
5 TraesCS3B01G141200 chr5A 54653165 54654093 928 False 894.000000 894 84.345000 1032 1953 1 chr5A.!!$F1 921
6 TraesCS3B01G141200 chr3A 95940699 95942964 2265 False 545.366667 822 94.457667 831 1964 3 chr3A.!!$F1 1133
7 TraesCS3B01G141200 chr7B 707963136 707963663 527 False 763.000000 763 92.803000 2418 2944 1 chr7B.!!$F1 526
8 TraesCS3B01G141200 chr6B 710910308 710910832 524 False 761.000000 761 92.789000 2421 2947 1 chr6B.!!$F3 526
9 TraesCS3B01G141200 chr6B 678532971 678533497 526 False 725.000000 725 91.477000 2418 2944 1 chr6B.!!$F1 526
10 TraesCS3B01G141200 chr6B 698091907 698092435 528 False 717.000000 717 91.149000 2415 2944 1 chr6B.!!$F2 529
11 TraesCS3B01G141200 chr2D 575827113 575827641 528 False 739.000000 739 91.902000 2415 2944 1 chr2D.!!$F2 529
12 TraesCS3B01G141200 chr2D 404889150 404890074 924 False 351.000000 351 74.414000 1039 1933 1 chr2D.!!$F1 894
13 TraesCS3B01G141200 chr2B 421077218 421080365 3147 False 724.500000 726 91.398500 2417 2945 2 chr2B.!!$F3 528
14 TraesCS3B01G141200 chr2B 479547135 479548059 924 False 307.000000 307 73.561000 1039 1933 1 chr2B.!!$F1 894
15 TraesCS3B01G141200 chr1D 1816133 1816661 528 False 725.000000 725 91.337000 2414 2944 1 chr1D.!!$F1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
696 2094 0.53087 GTAGCTGATCCGGCCAGAAC 60.531 60.0 22.53 16.23 36.2 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 4660 0.107312 CAGGAGGATGGCTGGAGTTG 60.107 60.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.582647 TCCTCTTCTTCCAGCAATGTGTA 59.417 43.478 0.00 0.00 0.00 2.90
72 73 4.225942 TCCTCTTCTTCCAGCAATGTGTAT 59.774 41.667 0.00 0.00 0.00 2.29
73 74 5.425217 TCCTCTTCTTCCAGCAATGTGTATA 59.575 40.000 0.00 0.00 0.00 1.47
122 125 6.969366 GCCATTTGCTCTTTGGTTAAAAATT 58.031 32.000 0.00 0.00 36.87 1.82
124 127 6.857451 CCATTTGCTCTTTGGTTAAAAATTGC 59.143 34.615 0.00 0.00 0.00 3.56
125 128 6.370433 TTTGCTCTTTGGTTAAAAATTGCC 57.630 33.333 0.00 0.00 0.00 4.52
693 2091 1.068753 CAGTAGCTGATCCGGCCAG 59.931 63.158 16.37 16.37 36.20 4.85
694 2092 1.075970 AGTAGCTGATCCGGCCAGA 60.076 57.895 22.53 0.00 36.20 3.86
695 2093 0.687757 AGTAGCTGATCCGGCCAGAA 60.688 55.000 22.53 10.20 36.20 3.02
696 2094 0.530870 GTAGCTGATCCGGCCAGAAC 60.531 60.000 22.53 16.23 36.20 3.01
697 2095 0.975556 TAGCTGATCCGGCCAGAACA 60.976 55.000 22.53 0.01 36.20 3.18
698 2096 1.377202 GCTGATCCGGCCAGAACAA 60.377 57.895 22.53 0.00 33.65 2.83
699 2097 1.372087 GCTGATCCGGCCAGAACAAG 61.372 60.000 22.53 0.00 33.65 3.16
700 2098 1.372087 CTGATCCGGCCAGAACAAGC 61.372 60.000 15.84 0.00 33.65 4.01
701 2099 1.078143 GATCCGGCCAGAACAAGCT 60.078 57.895 2.24 0.00 0.00 3.74
702 2100 1.372087 GATCCGGCCAGAACAAGCTG 61.372 60.000 2.24 0.00 35.66 4.24
703 2101 2.129555 ATCCGGCCAGAACAAGCTGT 62.130 55.000 2.24 0.00 34.06 4.40
704 2102 1.898574 CCGGCCAGAACAAGCTGTT 60.899 57.895 2.24 0.00 44.37 3.16
705 2103 1.455383 CCGGCCAGAACAAGCTGTTT 61.455 55.000 2.24 0.00 41.28 2.83
755 2157 3.004106 ACAAGTAGAGAGTGTAAACGCGT 59.996 43.478 5.58 5.58 0.00 6.01
869 2271 3.439540 GCGCGATGCCTTTTCCCA 61.440 61.111 12.10 0.00 37.76 4.37
890 2292 1.153289 CGGAGATCCCAAGGCACAG 60.153 63.158 0.00 0.00 34.14 3.66
895 2297 2.703007 GAGATCCCAAGGCACAGATAGT 59.297 50.000 0.00 0.00 0.00 2.12
897 2299 3.643792 AGATCCCAAGGCACAGATAGTAC 59.356 47.826 0.00 0.00 0.00 2.73
898 2300 2.827755 TCCCAAGGCACAGATAGTACA 58.172 47.619 0.00 0.00 0.00 2.90
899 2301 2.500098 TCCCAAGGCACAGATAGTACAC 59.500 50.000 0.00 0.00 0.00 2.90
922 2331 2.731976 GCGATGTCTATTTCATCCGGAC 59.268 50.000 6.12 0.00 38.60 4.79
948 2359 3.005367 CCACCCAGGAAACAAATACACAC 59.995 47.826 0.00 0.00 41.22 3.82
949 2360 2.882137 ACCCAGGAAACAAATACACACG 59.118 45.455 0.00 0.00 0.00 4.49
950 2361 3.142951 CCCAGGAAACAAATACACACGA 58.857 45.455 0.00 0.00 0.00 4.35
951 2362 3.058501 CCCAGGAAACAAATACACACGAC 60.059 47.826 0.00 0.00 0.00 4.34
952 2363 3.562141 CCAGGAAACAAATACACACGACA 59.438 43.478 0.00 0.00 0.00 4.35
953 2364 4.523813 CAGGAAACAAATACACACGACAC 58.476 43.478 0.00 0.00 0.00 3.67
954 2365 4.034626 CAGGAAACAAATACACACGACACA 59.965 41.667 0.00 0.00 0.00 3.72
955 2366 4.636648 AGGAAACAAATACACACGACACAA 59.363 37.500 0.00 0.00 0.00 3.33
997 2419 2.505407 CAGTGAGAGAGAGAGGGAGAGA 59.495 54.545 0.00 0.00 0.00 3.10
1933 4567 1.511305 GACAGGATCGTCGCCTTCA 59.489 57.895 0.00 0.00 32.12 3.02
1955 4592 0.322975 AACGCACCTTGATGCTCTCT 59.677 50.000 0.00 0.00 43.80 3.10
1964 4601 0.532573 TGATGCTCTCTTCACCGGAC 59.467 55.000 9.46 0.00 0.00 4.79
1965 4602 0.820871 GATGCTCTCTTCACCGGACT 59.179 55.000 9.46 0.00 0.00 3.85
1966 4603 2.025155 GATGCTCTCTTCACCGGACTA 58.975 52.381 9.46 0.00 0.00 2.59
1967 4604 1.174783 TGCTCTCTTCACCGGACTAC 58.825 55.000 9.46 0.00 0.00 2.73
1968 4605 0.099082 GCTCTCTTCACCGGACTACG 59.901 60.000 9.46 0.00 43.80 3.51
1969 4606 1.451067 CTCTCTTCACCGGACTACGT 58.549 55.000 9.46 0.00 42.24 3.57
1970 4607 1.130749 CTCTCTTCACCGGACTACGTG 59.869 57.143 9.46 0.00 42.24 4.49
1971 4608 0.879765 CTCTTCACCGGACTACGTGT 59.120 55.000 9.46 0.00 42.24 4.49
1972 4609 1.268899 CTCTTCACCGGACTACGTGTT 59.731 52.381 9.46 0.00 42.24 3.32
1973 4610 1.682854 TCTTCACCGGACTACGTGTTT 59.317 47.619 9.46 0.00 42.24 2.83
1974 4611 1.790623 CTTCACCGGACTACGTGTTTG 59.209 52.381 9.46 0.00 42.24 2.93
1975 4612 0.746063 TCACCGGACTACGTGTTTGT 59.254 50.000 9.46 0.00 42.24 2.83
1976 4613 0.856641 CACCGGACTACGTGTTTGTG 59.143 55.000 9.46 0.65 42.24 3.33
1977 4614 0.877213 ACCGGACTACGTGTTTGTGC 60.877 55.000 9.46 0.00 42.24 4.57
1978 4615 0.599204 CCGGACTACGTGTTTGTGCT 60.599 55.000 0.00 0.00 42.24 4.40
1979 4616 0.782384 CGGACTACGTGTTTGTGCTC 59.218 55.000 0.00 0.00 37.93 4.26
1980 4617 1.145803 GGACTACGTGTTTGTGCTCC 58.854 55.000 0.00 0.00 0.00 4.70
1981 4618 0.782384 GACTACGTGTTTGTGCTCCG 59.218 55.000 0.00 0.00 0.00 4.63
1982 4619 0.103572 ACTACGTGTTTGTGCTCCGT 59.896 50.000 0.00 0.00 35.68 4.69
1983 4620 1.214367 CTACGTGTTTGTGCTCCGTT 58.786 50.000 0.00 0.00 33.32 4.44
1984 4621 1.191647 CTACGTGTTTGTGCTCCGTTC 59.808 52.381 0.00 0.00 33.32 3.95
1985 4622 0.461339 ACGTGTTTGTGCTCCGTTCT 60.461 50.000 0.00 0.00 0.00 3.01
1986 4623 1.202440 ACGTGTTTGTGCTCCGTTCTA 60.202 47.619 0.00 0.00 0.00 2.10
1987 4624 1.455786 CGTGTTTGTGCTCCGTTCTAG 59.544 52.381 0.00 0.00 0.00 2.43
1988 4625 1.798813 GTGTTTGTGCTCCGTTCTAGG 59.201 52.381 0.00 0.00 0.00 3.02
1989 4626 1.689813 TGTTTGTGCTCCGTTCTAGGA 59.310 47.619 0.00 0.00 38.80 2.94
1990 4627 2.301870 TGTTTGTGCTCCGTTCTAGGAT 59.698 45.455 0.00 0.00 39.96 3.24
1991 4628 3.244422 TGTTTGTGCTCCGTTCTAGGATT 60.244 43.478 0.00 0.00 39.96 3.01
1992 4629 4.020928 TGTTTGTGCTCCGTTCTAGGATTA 60.021 41.667 0.00 0.00 39.96 1.75
1993 4630 5.116882 GTTTGTGCTCCGTTCTAGGATTAT 58.883 41.667 0.00 0.00 39.96 1.28
1994 4631 4.322080 TGTGCTCCGTTCTAGGATTATG 57.678 45.455 0.00 0.00 39.96 1.90
1995 4632 3.069586 TGTGCTCCGTTCTAGGATTATGG 59.930 47.826 0.00 0.00 39.96 2.74
1996 4633 2.037251 TGCTCCGTTCTAGGATTATGGC 59.963 50.000 0.00 0.00 39.96 4.40
1997 4634 2.927014 GCTCCGTTCTAGGATTATGGCG 60.927 54.545 0.00 0.00 39.96 5.69
1998 4635 2.557056 CTCCGTTCTAGGATTATGGCGA 59.443 50.000 0.00 0.00 39.96 5.54
1999 4636 3.162666 TCCGTTCTAGGATTATGGCGAT 58.837 45.455 0.00 0.00 34.92 4.58
2000 4637 3.056821 TCCGTTCTAGGATTATGGCGATG 60.057 47.826 0.00 0.00 34.92 3.84
2001 4638 3.056821 CCGTTCTAGGATTATGGCGATGA 60.057 47.826 0.00 0.00 0.00 2.92
2002 4639 4.556233 CGTTCTAGGATTATGGCGATGAA 58.444 43.478 0.00 0.00 0.00 2.57
2003 4640 4.988540 CGTTCTAGGATTATGGCGATGAAA 59.011 41.667 0.00 0.00 0.00 2.69
2004 4641 5.639506 CGTTCTAGGATTATGGCGATGAAAT 59.360 40.000 0.00 0.00 0.00 2.17
2005 4642 6.811665 CGTTCTAGGATTATGGCGATGAAATA 59.188 38.462 0.00 0.00 0.00 1.40
2006 4643 7.330946 CGTTCTAGGATTATGGCGATGAAATAA 59.669 37.037 0.00 0.00 0.00 1.40
2007 4644 8.999431 GTTCTAGGATTATGGCGATGAAATAAA 58.001 33.333 0.00 0.00 0.00 1.40
2008 4645 9.739276 TTCTAGGATTATGGCGATGAAATAAAT 57.261 29.630 0.00 0.00 0.00 1.40
2009 4646 9.739276 TCTAGGATTATGGCGATGAAATAAATT 57.261 29.630 0.00 0.00 0.00 1.82
2010 4647 9.778993 CTAGGATTATGGCGATGAAATAAATTG 57.221 33.333 0.00 0.00 0.00 2.32
2011 4648 7.605449 AGGATTATGGCGATGAAATAAATTGG 58.395 34.615 0.00 0.00 0.00 3.16
2012 4649 7.451255 AGGATTATGGCGATGAAATAAATTGGA 59.549 33.333 0.00 0.00 0.00 3.53
2013 4650 8.253113 GGATTATGGCGATGAAATAAATTGGAT 58.747 33.333 0.00 0.00 0.00 3.41
2014 4651 9.643693 GATTATGGCGATGAAATAAATTGGATT 57.356 29.630 0.00 0.00 0.00 3.01
2017 4654 8.816640 ATGGCGATGAAATAAATTGGATTTAC 57.183 30.769 0.00 0.00 37.53 2.01
2018 4655 8.006298 TGGCGATGAAATAAATTGGATTTACT 57.994 30.769 0.00 0.00 37.53 2.24
2019 4656 7.920151 TGGCGATGAAATAAATTGGATTTACTG 59.080 33.333 0.00 0.00 37.53 2.74
2020 4657 7.382218 GGCGATGAAATAAATTGGATTTACTGG 59.618 37.037 0.00 0.00 37.53 4.00
2021 4658 8.134895 GCGATGAAATAAATTGGATTTACTGGA 58.865 33.333 0.00 0.00 37.53 3.86
2029 4666 6.590234 AATTGGATTTACTGGAACAACTCC 57.410 37.500 0.00 0.00 45.64 3.85
2030 4667 7.726291 TAAATTGGATTTACTGGAACAACTCCA 59.274 33.333 0.00 0.00 41.55 3.86
2037 4674 2.873797 GGAACAACTCCAGCCATCC 58.126 57.895 0.00 0.00 44.67 3.51
2038 4675 0.329596 GGAACAACTCCAGCCATCCT 59.670 55.000 0.00 0.00 44.67 3.24
2039 4676 1.680249 GGAACAACTCCAGCCATCCTC 60.680 57.143 0.00 0.00 44.67 3.71
2040 4677 0.329596 AACAACTCCAGCCATCCTCC 59.670 55.000 0.00 0.00 0.00 4.30
2041 4678 0.548682 ACAACTCCAGCCATCCTCCT 60.549 55.000 0.00 0.00 0.00 3.69
2042 4679 0.107312 CAACTCCAGCCATCCTCCTG 60.107 60.000 0.00 0.00 0.00 3.86
2043 4680 0.548682 AACTCCAGCCATCCTCCTGT 60.549 55.000 0.00 0.00 0.00 4.00
2044 4681 0.548682 ACTCCAGCCATCCTCCTGTT 60.549 55.000 0.00 0.00 0.00 3.16
2045 4682 0.622665 CTCCAGCCATCCTCCTGTTT 59.377 55.000 0.00 0.00 0.00 2.83
2046 4683 0.620556 TCCAGCCATCCTCCTGTTTC 59.379 55.000 0.00 0.00 0.00 2.78
2047 4684 0.394899 CCAGCCATCCTCCTGTTTCC 60.395 60.000 0.00 0.00 0.00 3.13
2048 4685 0.622665 CAGCCATCCTCCTGTTTCCT 59.377 55.000 0.00 0.00 0.00 3.36
2049 4686 0.915364 AGCCATCCTCCTGTTTCCTC 59.085 55.000 0.00 0.00 0.00 3.71
2050 4687 0.620556 GCCATCCTCCTGTTTCCTCA 59.379 55.000 0.00 0.00 0.00 3.86
2051 4688 1.680249 GCCATCCTCCTGTTTCCTCAC 60.680 57.143 0.00 0.00 0.00 3.51
2052 4689 1.065126 CCATCCTCCTGTTTCCTCACC 60.065 57.143 0.00 0.00 0.00 4.02
2053 4690 1.912043 CATCCTCCTGTTTCCTCACCT 59.088 52.381 0.00 0.00 0.00 4.00
2054 4691 3.107601 CATCCTCCTGTTTCCTCACCTA 58.892 50.000 0.00 0.00 0.00 3.08
2055 4692 2.537143 TCCTCCTGTTTCCTCACCTAC 58.463 52.381 0.00 0.00 0.00 3.18
2056 4693 1.555533 CCTCCTGTTTCCTCACCTACC 59.444 57.143 0.00 0.00 0.00 3.18
2057 4694 2.541466 CTCCTGTTTCCTCACCTACCT 58.459 52.381 0.00 0.00 0.00 3.08
2058 4695 2.498078 CTCCTGTTTCCTCACCTACCTC 59.502 54.545 0.00 0.00 0.00 3.85
2059 4696 2.111972 TCCTGTTTCCTCACCTACCTCT 59.888 50.000 0.00 0.00 0.00 3.69
2060 4697 2.498078 CCTGTTTCCTCACCTACCTCTC 59.502 54.545 0.00 0.00 0.00 3.20
2061 4698 3.165875 CTGTTTCCTCACCTACCTCTCA 58.834 50.000 0.00 0.00 0.00 3.27
2062 4699 3.578716 CTGTTTCCTCACCTACCTCTCAA 59.421 47.826 0.00 0.00 0.00 3.02
2063 4700 4.168101 TGTTTCCTCACCTACCTCTCAAT 58.832 43.478 0.00 0.00 0.00 2.57
2064 4701 4.597507 TGTTTCCTCACCTACCTCTCAATT 59.402 41.667 0.00 0.00 0.00 2.32
2065 4702 5.073144 TGTTTCCTCACCTACCTCTCAATTT 59.927 40.000 0.00 0.00 0.00 1.82
2066 4703 5.422214 TTCCTCACCTACCTCTCAATTTC 57.578 43.478 0.00 0.00 0.00 2.17
2067 4704 4.425772 TCCTCACCTACCTCTCAATTTCA 58.574 43.478 0.00 0.00 0.00 2.69
2068 4705 4.467795 TCCTCACCTACCTCTCAATTTCAG 59.532 45.833 0.00 0.00 0.00 3.02
2069 4706 4.383552 CCTCACCTACCTCTCAATTTCAGG 60.384 50.000 0.00 0.00 0.00 3.86
2070 4707 3.519510 TCACCTACCTCTCAATTTCAGGG 59.480 47.826 0.00 0.00 0.00 4.45
2071 4708 2.846827 ACCTACCTCTCAATTTCAGGGG 59.153 50.000 0.00 0.00 37.56 4.79
2072 4709 2.422093 CCTACCTCTCAATTTCAGGGGC 60.422 54.545 0.43 0.00 34.36 5.80
2073 4710 0.332972 ACCTCTCAATTTCAGGGGCC 59.667 55.000 0.00 0.00 34.36 5.80
2074 4711 0.627986 CCTCTCAATTTCAGGGGCCT 59.372 55.000 0.84 0.00 0.00 5.19
2075 4712 1.006400 CCTCTCAATTTCAGGGGCCTT 59.994 52.381 0.84 0.00 0.00 4.35
2076 4713 2.558350 CCTCTCAATTTCAGGGGCCTTT 60.558 50.000 0.84 0.00 0.00 3.11
2077 4714 3.309121 CCTCTCAATTTCAGGGGCCTTTA 60.309 47.826 0.84 0.00 0.00 1.85
2078 4715 3.950395 CTCTCAATTTCAGGGGCCTTTAG 59.050 47.826 0.84 0.00 0.00 1.85
2079 4716 2.428530 CTCAATTTCAGGGGCCTTTAGC 59.571 50.000 0.84 0.00 42.60 3.09
2080 4717 2.042979 TCAATTTCAGGGGCCTTTAGCT 59.957 45.455 0.84 0.00 43.05 3.32
2081 4718 2.833943 CAATTTCAGGGGCCTTTAGCTT 59.166 45.455 0.84 0.00 43.05 3.74
2082 4719 2.694616 TTTCAGGGGCCTTTAGCTTT 57.305 45.000 0.84 0.00 43.05 3.51
2083 4720 3.818295 TTTCAGGGGCCTTTAGCTTTA 57.182 42.857 0.84 0.00 43.05 1.85
2084 4721 2.801077 TCAGGGGCCTTTAGCTTTAC 57.199 50.000 0.84 0.00 43.05 2.01
2085 4722 1.283905 TCAGGGGCCTTTAGCTTTACC 59.716 52.381 0.84 0.00 43.05 2.85
2086 4723 1.005450 CAGGGGCCTTTAGCTTTACCA 59.995 52.381 0.84 0.00 43.05 3.25
2087 4724 1.714217 AGGGGCCTTTAGCTTTACCAA 59.286 47.619 0.84 0.00 43.05 3.67
2088 4725 2.314852 AGGGGCCTTTAGCTTTACCAAT 59.685 45.455 0.84 0.00 43.05 3.16
2089 4726 3.104512 GGGGCCTTTAGCTTTACCAATT 58.895 45.455 0.84 0.00 43.05 2.32
2090 4727 4.016944 AGGGGCCTTTAGCTTTACCAATTA 60.017 41.667 0.84 0.00 43.05 1.40
2091 4728 4.899457 GGGGCCTTTAGCTTTACCAATTAT 59.101 41.667 0.84 0.00 43.05 1.28
2092 4729 5.010719 GGGGCCTTTAGCTTTACCAATTATC 59.989 44.000 0.84 0.00 43.05 1.75
2093 4730 5.596772 GGGCCTTTAGCTTTACCAATTATCA 59.403 40.000 0.84 0.00 43.05 2.15
2094 4731 6.461092 GGGCCTTTAGCTTTACCAATTATCAC 60.461 42.308 0.84 0.00 43.05 3.06
2095 4732 6.461092 GGCCTTTAGCTTTACCAATTATCACC 60.461 42.308 0.00 0.00 43.05 4.02
2096 4733 6.321435 GCCTTTAGCTTTACCAATTATCACCT 59.679 38.462 0.00 0.00 38.99 4.00
2097 4734 7.147897 GCCTTTAGCTTTACCAATTATCACCTT 60.148 37.037 0.00 0.00 38.99 3.50
2098 4735 8.749354 CCTTTAGCTTTACCAATTATCACCTTT 58.251 33.333 0.00 0.00 0.00 3.11
2099 4736 9.573133 CTTTAGCTTTACCAATTATCACCTTTG 57.427 33.333 0.00 0.00 0.00 2.77
2100 4737 8.644374 TTAGCTTTACCAATTATCACCTTTGT 57.356 30.769 0.00 0.00 0.00 2.83
2101 4738 7.539034 AGCTTTACCAATTATCACCTTTGTT 57.461 32.000 0.00 0.00 0.00 2.83
2102 4739 7.602753 AGCTTTACCAATTATCACCTTTGTTC 58.397 34.615 0.00 0.00 0.00 3.18
2103 4740 7.232534 AGCTTTACCAATTATCACCTTTGTTCA 59.767 33.333 0.00 0.00 0.00 3.18
2104 4741 8.034804 GCTTTACCAATTATCACCTTTGTTCAT 58.965 33.333 0.00 0.00 0.00 2.57
2107 4744 9.747898 TTACCAATTATCACCTTTGTTCATACT 57.252 29.630 0.00 0.00 0.00 2.12
2108 4745 8.650143 ACCAATTATCACCTTTGTTCATACTT 57.350 30.769 0.00 0.00 0.00 2.24
2109 4746 8.739972 ACCAATTATCACCTTTGTTCATACTTC 58.260 33.333 0.00 0.00 0.00 3.01
2110 4747 8.190784 CCAATTATCACCTTTGTTCATACTTCC 58.809 37.037 0.00 0.00 0.00 3.46
2111 4748 8.960591 CAATTATCACCTTTGTTCATACTTCCT 58.039 33.333 0.00 0.00 0.00 3.36
2112 4749 8.738645 ATTATCACCTTTGTTCATACTTCCTC 57.261 34.615 0.00 0.00 0.00 3.71
2113 4750 4.906618 TCACCTTTGTTCATACTTCCTCC 58.093 43.478 0.00 0.00 0.00 4.30
2114 4751 3.684788 CACCTTTGTTCATACTTCCTCCG 59.315 47.826 0.00 0.00 0.00 4.63
2115 4752 3.326880 ACCTTTGTTCATACTTCCTCCGT 59.673 43.478 0.00 0.00 0.00 4.69
2116 4753 4.202430 ACCTTTGTTCATACTTCCTCCGTT 60.202 41.667 0.00 0.00 0.00 4.44
2117 4754 4.392138 CCTTTGTTCATACTTCCTCCGTTC 59.608 45.833 0.00 0.00 0.00 3.95
2118 4755 3.226346 TGTTCATACTTCCTCCGTTCG 57.774 47.619 0.00 0.00 0.00 3.95
2119 4756 2.094390 TGTTCATACTTCCTCCGTTCGG 60.094 50.000 4.74 4.74 0.00 4.30
2120 4757 2.133281 TCATACTTCCTCCGTTCGGA 57.867 50.000 13.34 13.34 0.00 4.55
2121 4758 2.449464 TCATACTTCCTCCGTTCGGAA 58.551 47.619 14.79 0.00 38.18 4.30
2122 4759 3.028850 TCATACTTCCTCCGTTCGGAAT 58.971 45.455 14.79 2.14 39.64 3.01
2123 4760 3.449737 TCATACTTCCTCCGTTCGGAATT 59.550 43.478 14.79 0.00 39.64 2.17
2124 4761 4.646040 TCATACTTCCTCCGTTCGGAATTA 59.354 41.667 14.79 1.22 39.64 1.40
2125 4762 3.242549 ACTTCCTCCGTTCGGAATTAC 57.757 47.619 14.79 0.00 39.64 1.89
2126 4763 2.830321 ACTTCCTCCGTTCGGAATTACT 59.170 45.455 14.79 0.00 39.64 2.24
2127 4764 3.260128 ACTTCCTCCGTTCGGAATTACTT 59.740 43.478 14.79 0.00 39.64 2.24
2128 4765 3.241067 TCCTCCGTTCGGAATTACTTG 57.759 47.619 14.79 1.97 33.41 3.16
2129 4766 2.564062 TCCTCCGTTCGGAATTACTTGT 59.436 45.455 14.79 0.00 33.41 3.16
2130 4767 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2131 4768 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2132 4769 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2133 4770 3.256383 TCCGTTCGGAATTACTTGTCTCA 59.744 43.478 11.66 0.00 0.00 3.27
2134 4771 3.612860 CCGTTCGGAATTACTTGTCTCAG 59.387 47.826 5.19 0.00 0.00 3.35
2135 4772 4.482386 CGTTCGGAATTACTTGTCTCAGA 58.518 43.478 0.00 0.00 0.00 3.27
2136 4773 4.921515 CGTTCGGAATTACTTGTCTCAGAA 59.078 41.667 0.00 0.00 0.00 3.02
2137 4774 5.404366 CGTTCGGAATTACTTGTCTCAGAAA 59.596 40.000 0.00 0.00 0.00 2.52
2138 4775 6.090898 CGTTCGGAATTACTTGTCTCAGAAAT 59.909 38.462 0.00 0.00 0.00 2.17
2139 4776 6.968131 TCGGAATTACTTGTCTCAGAAATG 57.032 37.500 0.00 0.00 0.00 2.32
2140 4777 6.697395 TCGGAATTACTTGTCTCAGAAATGA 58.303 36.000 0.00 0.00 0.00 2.57
2141 4778 7.158697 TCGGAATTACTTGTCTCAGAAATGAA 58.841 34.615 0.00 0.00 0.00 2.57
2142 4779 7.824289 TCGGAATTACTTGTCTCAGAAATGAAT 59.176 33.333 0.00 0.00 0.00 2.57
2143 4780 7.907045 CGGAATTACTTGTCTCAGAAATGAATG 59.093 37.037 0.00 0.00 0.00 2.67
2144 4781 8.734386 GGAATTACTTGTCTCAGAAATGAATGT 58.266 33.333 0.00 0.00 0.00 2.71
2161 4798 4.777463 GAATGTAATTCGGAAGGAAGGGA 58.223 43.478 0.00 0.00 44.37 4.20
2162 4799 3.906720 TGTAATTCGGAAGGAAGGGAG 57.093 47.619 0.00 0.00 38.24 4.30
2163 4800 3.178865 TGTAATTCGGAAGGAAGGGAGT 58.821 45.455 0.00 0.00 38.24 3.85
2164 4801 4.355549 TGTAATTCGGAAGGAAGGGAGTA 58.644 43.478 0.00 0.00 38.24 2.59
2165 4802 3.908643 AATTCGGAAGGAAGGGAGTAC 57.091 47.619 0.00 0.00 38.24 2.73
2166 4803 2.617840 TTCGGAAGGAAGGGAGTACT 57.382 50.000 0.00 0.00 0.00 2.73
2167 4804 2.617840 TCGGAAGGAAGGGAGTACTT 57.382 50.000 0.00 0.00 0.00 2.24
2168 4805 3.744940 TCGGAAGGAAGGGAGTACTTA 57.255 47.619 0.00 0.00 0.00 2.24
2169 4806 3.359950 TCGGAAGGAAGGGAGTACTTAC 58.640 50.000 0.00 0.00 0.00 2.34
2170 4807 2.429971 CGGAAGGAAGGGAGTACTTACC 59.570 54.545 8.99 8.99 31.37 2.85
2171 4808 3.447950 GGAAGGAAGGGAGTACTTACCA 58.552 50.000 16.93 0.00 31.37 3.25
2172 4809 4.038633 GGAAGGAAGGGAGTACTTACCAT 58.961 47.826 16.93 7.48 31.37 3.55
2173 4810 5.214293 GGAAGGAAGGGAGTACTTACCATA 58.786 45.833 16.93 0.00 31.37 2.74
2174 4811 5.664457 GGAAGGAAGGGAGTACTTACCATAA 59.336 44.000 16.93 0.00 31.37 1.90
2175 4812 6.183360 GGAAGGAAGGGAGTACTTACCATAAG 60.183 46.154 16.93 0.00 31.37 1.73
2176 4813 6.101274 AGGAAGGGAGTACTTACCATAAGA 57.899 41.667 16.93 0.00 31.37 2.10
2177 4814 5.898397 AGGAAGGGAGTACTTACCATAAGAC 59.102 44.000 16.93 4.41 31.37 3.01
2178 4815 5.659971 GGAAGGGAGTACTTACCATAAGACA 59.340 44.000 16.93 0.00 0.00 3.41
2179 4816 6.326843 GGAAGGGAGTACTTACCATAAGACAT 59.673 42.308 16.93 0.00 0.00 3.06
2180 4817 7.147532 GGAAGGGAGTACTTACCATAAGACATT 60.148 40.741 16.93 3.28 0.00 2.71
2181 4818 7.750947 AGGGAGTACTTACCATAAGACATTT 57.249 36.000 16.93 0.00 0.00 2.32
2182 4819 8.159229 AGGGAGTACTTACCATAAGACATTTT 57.841 34.615 16.93 0.00 0.00 1.82
2183 4820 9.275572 AGGGAGTACTTACCATAAGACATTTTA 57.724 33.333 16.93 0.00 0.00 1.52
2224 4861 8.997621 TTTTAATATGAGCTACAGAAACGAGT 57.002 30.769 0.00 0.00 0.00 4.18
2228 4865 7.988904 ATATGAGCTACAGAAACGAGTAAAC 57.011 36.000 0.00 0.00 0.00 2.01
2229 4866 5.190992 TGAGCTACAGAAACGAGTAAACA 57.809 39.130 0.00 0.00 0.00 2.83
2230 4867 5.593968 TGAGCTACAGAAACGAGTAAACAA 58.406 37.500 0.00 0.00 0.00 2.83
2231 4868 6.044046 TGAGCTACAGAAACGAGTAAACAAA 58.956 36.000 0.00 0.00 0.00 2.83
2232 4869 6.200286 TGAGCTACAGAAACGAGTAAACAAAG 59.800 38.462 0.00 0.00 0.00 2.77
2233 4870 5.465724 AGCTACAGAAACGAGTAAACAAAGG 59.534 40.000 0.00 0.00 0.00 3.11
2234 4871 4.547406 ACAGAAACGAGTAAACAAAGGC 57.453 40.909 0.00 0.00 0.00 4.35
2235 4872 3.942748 ACAGAAACGAGTAAACAAAGGCA 59.057 39.130 0.00 0.00 0.00 4.75
2236 4873 4.578928 ACAGAAACGAGTAAACAAAGGCAT 59.421 37.500 0.00 0.00 0.00 4.40
2237 4874 5.067283 ACAGAAACGAGTAAACAAAGGCATT 59.933 36.000 0.00 0.00 0.00 3.56
2238 4875 6.261381 ACAGAAACGAGTAAACAAAGGCATTA 59.739 34.615 0.00 0.00 0.00 1.90
2239 4876 7.136119 CAGAAACGAGTAAACAAAGGCATTAA 58.864 34.615 0.00 0.00 0.00 1.40
2240 4877 7.807907 CAGAAACGAGTAAACAAAGGCATTAAT 59.192 33.333 0.00 0.00 0.00 1.40
2241 4878 8.357402 AGAAACGAGTAAACAAAGGCATTAATT 58.643 29.630 0.00 0.00 0.00 1.40
2242 4879 9.615295 GAAACGAGTAAACAAAGGCATTAATTA 57.385 29.630 0.00 0.00 0.00 1.40
2243 4880 9.968870 AAACGAGTAAACAAAGGCATTAATTAA 57.031 25.926 0.00 0.00 0.00 1.40
2244 4881 9.968870 AACGAGTAAACAAAGGCATTAATTAAA 57.031 25.926 1.21 0.00 0.00 1.52
2245 4882 9.968870 ACGAGTAAACAAAGGCATTAATTAAAA 57.031 25.926 1.21 0.00 0.00 1.52
2297 4934 8.928270 AGTTAGAACATCTTATTTCAGTACGG 57.072 34.615 0.00 0.00 0.00 4.02
2298 4935 8.746530 AGTTAGAACATCTTATTTCAGTACGGA 58.253 33.333 0.00 0.00 0.00 4.69
2299 4936 8.805688 GTTAGAACATCTTATTTCAGTACGGAC 58.194 37.037 0.00 0.00 0.00 4.79
2300 4937 6.034591 AGAACATCTTATTTCAGTACGGACG 58.965 40.000 0.00 0.00 0.00 4.79
2301 4938 4.679662 ACATCTTATTTCAGTACGGACGG 58.320 43.478 0.00 0.00 0.00 4.79
2302 4939 4.400251 ACATCTTATTTCAGTACGGACGGA 59.600 41.667 0.00 0.00 0.00 4.69
2303 4940 4.627611 TCTTATTTCAGTACGGACGGAG 57.372 45.455 0.00 0.00 31.07 4.63
2338 4975 8.472683 TTGTATATTTTCTTTTGGCGATTTGG 57.527 30.769 0.00 0.00 0.00 3.28
2339 4976 7.607250 TGTATATTTTCTTTTGGCGATTTGGT 58.393 30.769 0.00 0.00 0.00 3.67
2340 4977 8.091449 TGTATATTTTCTTTTGGCGATTTGGTT 58.909 29.630 0.00 0.00 0.00 3.67
2341 4978 5.671742 ATTTTCTTTTGGCGATTTGGTTG 57.328 34.783 0.00 0.00 0.00 3.77
2342 4979 3.810310 TTCTTTTGGCGATTTGGTTGT 57.190 38.095 0.00 0.00 0.00 3.32
2343 4980 3.810310 TCTTTTGGCGATTTGGTTGTT 57.190 38.095 0.00 0.00 0.00 2.83
2344 4981 4.920640 TCTTTTGGCGATTTGGTTGTTA 57.079 36.364 0.00 0.00 0.00 2.41
2345 4982 4.865776 TCTTTTGGCGATTTGGTTGTTAG 58.134 39.130 0.00 0.00 0.00 2.34
2346 4983 2.715737 TTGGCGATTTGGTTGTTAGC 57.284 45.000 0.00 0.00 0.00 3.09
2347 4984 1.610363 TGGCGATTTGGTTGTTAGCA 58.390 45.000 0.00 0.00 0.00 3.49
2348 4985 2.166829 TGGCGATTTGGTTGTTAGCAT 58.833 42.857 0.00 0.00 0.00 3.79
2349 4986 2.560542 TGGCGATTTGGTTGTTAGCATT 59.439 40.909 0.00 0.00 0.00 3.56
2350 4987 3.006323 TGGCGATTTGGTTGTTAGCATTT 59.994 39.130 0.00 0.00 0.00 2.32
2351 4988 3.367630 GGCGATTTGGTTGTTAGCATTTG 59.632 43.478 0.00 0.00 0.00 2.32
2352 4989 3.181531 GCGATTTGGTTGTTAGCATTTGC 60.182 43.478 0.00 0.00 42.49 3.68
2353 4990 3.986572 CGATTTGGTTGTTAGCATTTGCA 59.013 39.130 5.20 0.00 45.16 4.08
2354 4991 4.143347 CGATTTGGTTGTTAGCATTTGCAC 60.143 41.667 5.20 0.00 45.16 4.57
2355 4992 2.414058 TGGTTGTTAGCATTTGCACG 57.586 45.000 5.20 0.00 45.16 5.34
2356 4993 1.950216 TGGTTGTTAGCATTTGCACGA 59.050 42.857 5.20 0.00 45.16 4.35
2357 4994 2.556189 TGGTTGTTAGCATTTGCACGAT 59.444 40.909 5.20 0.00 45.16 3.73
2358 4995 3.005261 TGGTTGTTAGCATTTGCACGATT 59.995 39.130 5.20 0.00 45.16 3.34
2359 4996 3.608073 GGTTGTTAGCATTTGCACGATTC 59.392 43.478 5.20 0.00 45.16 2.52
2360 4997 3.116063 TGTTAGCATTTGCACGATTCG 57.884 42.857 4.14 4.14 45.16 3.34
2361 4998 2.159585 TGTTAGCATTTGCACGATTCGG 60.160 45.455 11.29 0.73 45.16 4.30
2362 4999 1.732941 TAGCATTTGCACGATTCGGT 58.267 45.000 11.29 0.00 45.16 4.69
2363 5000 0.881118 AGCATTTGCACGATTCGGTT 59.119 45.000 11.29 0.00 45.16 4.44
2364 5001 0.984109 GCATTTGCACGATTCGGTTG 59.016 50.000 11.29 1.63 41.59 3.77
2365 5002 1.665735 GCATTTGCACGATTCGGTTGT 60.666 47.619 11.29 0.00 41.59 3.32
2366 5003 2.660490 CATTTGCACGATTCGGTTGTT 58.340 42.857 11.29 0.00 0.00 2.83
2367 5004 2.392933 TTTGCACGATTCGGTTGTTC 57.607 45.000 11.29 0.00 0.00 3.18
2368 5005 0.233590 TTGCACGATTCGGTTGTTCG 59.766 50.000 11.29 0.00 38.76 3.95
2369 5006 0.876777 TGCACGATTCGGTTGTTCGT 60.877 50.000 11.29 0.00 46.16 3.85
2370 5007 0.233848 GCACGATTCGGTTGTTCGTT 59.766 50.000 11.29 0.00 42.99 3.85
2371 5008 1.333435 GCACGATTCGGTTGTTCGTTT 60.333 47.619 11.29 0.00 42.99 3.60
2372 5009 2.851764 GCACGATTCGGTTGTTCGTTTT 60.852 45.455 11.29 0.00 42.99 2.43
2373 5010 3.356145 CACGATTCGGTTGTTCGTTTTT 58.644 40.909 11.29 0.00 42.99 1.94
2374 5011 3.176867 CACGATTCGGTTGTTCGTTTTTG 59.823 43.478 11.29 0.00 42.99 2.44
2375 5012 2.150424 CGATTCGGTTGTTCGTTTTTGC 59.850 45.455 0.00 0.00 0.00 3.68
2376 5013 2.923605 TTCGGTTGTTCGTTTTTGCT 57.076 40.000 0.00 0.00 0.00 3.91
2377 5014 2.181426 TCGGTTGTTCGTTTTTGCTG 57.819 45.000 0.00 0.00 0.00 4.41
2378 5015 1.738350 TCGGTTGTTCGTTTTTGCTGA 59.262 42.857 0.00 0.00 0.00 4.26
2379 5016 2.108700 CGGTTGTTCGTTTTTGCTGAG 58.891 47.619 0.00 0.00 0.00 3.35
2380 5017 2.477189 CGGTTGTTCGTTTTTGCTGAGT 60.477 45.455 0.00 0.00 0.00 3.41
2381 5018 2.851824 GGTTGTTCGTTTTTGCTGAGTG 59.148 45.455 0.00 0.00 0.00 3.51
2382 5019 2.187351 TGTTCGTTTTTGCTGAGTGC 57.813 45.000 0.00 0.00 43.25 4.40
2383 5020 1.742831 TGTTCGTTTTTGCTGAGTGCT 59.257 42.857 0.00 0.00 43.37 4.40
2384 5021 2.111756 GTTCGTTTTTGCTGAGTGCTG 58.888 47.619 0.00 0.00 43.37 4.41
2385 5022 1.378531 TCGTTTTTGCTGAGTGCTGT 58.621 45.000 0.00 0.00 43.37 4.40
2386 5023 1.063912 TCGTTTTTGCTGAGTGCTGTG 59.936 47.619 0.00 0.00 43.37 3.66
2387 5024 1.203065 GTTTTTGCTGAGTGCTGTGC 58.797 50.000 0.00 0.00 43.37 4.57
2388 5025 0.816373 TTTTTGCTGAGTGCTGTGCA 59.184 45.000 0.00 0.00 43.37 4.57
2389 5026 0.816373 TTTTGCTGAGTGCTGTGCAA 59.184 45.000 0.00 0.00 41.47 4.08
2390 5027 1.034356 TTTGCTGAGTGCTGTGCAAT 58.966 45.000 0.00 0.00 43.53 3.56
2391 5028 0.312729 TTGCTGAGTGCTGTGCAATG 59.687 50.000 0.00 0.00 41.47 2.82
2392 5029 1.211969 GCTGAGTGCTGTGCAATGG 59.788 57.895 0.00 0.00 41.47 3.16
2393 5030 1.239296 GCTGAGTGCTGTGCAATGGA 61.239 55.000 0.00 0.00 41.47 3.41
2394 5031 0.520404 CTGAGTGCTGTGCAATGGAC 59.480 55.000 0.00 0.00 41.47 4.02
2395 5032 0.109153 TGAGTGCTGTGCAATGGACT 59.891 50.000 12.78 12.78 41.47 3.85
2396 5033 0.520404 GAGTGCTGTGCAATGGACTG 59.480 55.000 16.68 6.93 41.47 3.51
2397 5034 1.080974 GTGCTGTGCAATGGACTGC 60.081 57.895 24.87 24.87 41.47 4.40
2398 5035 1.228337 TGCTGTGCAATGGACTGCT 60.228 52.632 29.29 0.00 43.07 4.24
2399 5036 0.824595 TGCTGTGCAATGGACTGCTT 60.825 50.000 29.29 0.00 43.07 3.91
2400 5037 0.388134 GCTGTGCAATGGACTGCTTG 60.388 55.000 24.48 4.36 43.07 4.01
2401 5038 0.388134 CTGTGCAATGGACTGCTTGC 60.388 55.000 6.43 0.00 46.19 4.01
2402 5039 1.080298 GTGCAATGGACTGCTTGCC 60.080 57.895 0.00 0.00 45.58 4.52
2403 5040 1.228644 TGCAATGGACTGCTTGCCT 60.229 52.632 3.94 0.00 45.58 4.75
2404 5041 0.828762 TGCAATGGACTGCTTGCCTT 60.829 50.000 3.94 0.00 45.58 4.35
2405 5042 0.389426 GCAATGGACTGCTTGCCTTG 60.389 55.000 0.00 0.00 41.45 3.61
2406 5043 0.245539 CAATGGACTGCTTGCCTTGG 59.754 55.000 0.00 0.00 0.00 3.61
2407 5044 0.901580 AATGGACTGCTTGCCTTGGG 60.902 55.000 0.00 0.00 0.00 4.12
2495 5132 5.092781 CACGTATAAATCAACCTGGCAAAC 58.907 41.667 0.00 0.00 0.00 2.93
2502 5139 2.031120 TCAACCTGGCAAACCTGAAAG 58.969 47.619 0.00 0.00 37.06 2.62
2524 5161 4.019321 AGGACAGCAAATCACTAGCCTTTA 60.019 41.667 0.00 0.00 0.00 1.85
2579 5216 2.941453 TCAAGACCGAAGAATCCTCG 57.059 50.000 0.00 0.00 0.00 4.63
2613 5250 2.997315 CCCGTCACCTGCCTCTGA 60.997 66.667 0.00 0.00 0.00 3.27
2637 7895 0.698238 ACCATAGCAGCCACCAAAGA 59.302 50.000 0.00 0.00 0.00 2.52
2764 8024 1.189524 TGAACGAATCAGACCGGGGT 61.190 55.000 6.32 0.00 33.04 4.95
2899 8161 1.112916 TCTTCCAGATGCCGCCGATA 61.113 55.000 0.00 0.00 0.00 2.92
2947 8210 1.961180 CTACCTCCCAAGCTCCACGG 61.961 65.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.183368 GAAGAAGAGGAGGAATATTGACAAAAT 57.817 33.333 0.00 0.00 0.00 1.82
36 37 6.215431 TGGAAGAAGAGGAGGAATATTGACAA 59.785 38.462 0.00 0.00 0.00 3.18
676 2074 0.687757 TTCTGGCCGGATCAGCTACT 60.688 55.000 16.96 0.00 32.63 2.57
693 2091 6.086765 CGAAATGATGTACAAACAGCTTGTTC 59.913 38.462 0.00 3.93 46.49 3.18
694 2092 5.914635 CGAAATGATGTACAAACAGCTTGTT 59.085 36.000 0.00 0.00 46.49 2.83
696 2094 4.853196 CCGAAATGATGTACAAACAGCTTG 59.147 41.667 0.00 0.00 42.60 4.01
697 2095 4.518970 ACCGAAATGATGTACAAACAGCTT 59.481 37.500 0.00 1.98 42.60 3.74
698 2096 4.072131 ACCGAAATGATGTACAAACAGCT 58.928 39.130 0.00 0.00 42.60 4.24
699 2097 4.158384 CACCGAAATGATGTACAAACAGC 58.842 43.478 0.00 0.00 42.47 4.40
700 2098 5.049749 TCACACCGAAATGATGTACAAACAG 60.050 40.000 0.00 0.00 39.49 3.16
701 2099 4.816925 TCACACCGAAATGATGTACAAACA 59.183 37.500 0.00 3.99 40.69 2.83
702 2100 5.351233 TCACACCGAAATGATGTACAAAC 57.649 39.130 0.00 0.00 0.00 2.93
703 2101 6.567687 ATTCACACCGAAATGATGTACAAA 57.432 33.333 0.00 0.00 37.12 2.83
704 2102 6.876789 ACTATTCACACCGAAATGATGTACAA 59.123 34.615 0.00 0.00 37.12 2.41
705 2103 6.403049 ACTATTCACACCGAAATGATGTACA 58.597 36.000 0.00 0.00 37.12 2.90
755 2157 1.529438 GACAAATGCTTGACCGTTCGA 59.471 47.619 0.00 0.00 36.33 3.71
798 2200 2.166584 GAACCGACAAACGCTTCCCG 62.167 60.000 0.00 0.00 44.21 5.14
826 2228 4.408821 TGGCGGTGGACTGATGGC 62.409 66.667 0.00 0.00 0.00 4.40
827 2229 2.436646 GTGGCGGTGGACTGATGG 60.437 66.667 0.00 0.00 0.00 3.51
869 2271 1.384502 TGCCTTGGGATCTCCGGAT 60.385 57.895 3.57 0.00 38.76 4.18
890 2292 4.681835 ATAGACATCGCGGTGTACTATC 57.318 45.455 27.45 12.81 31.16 2.08
895 2297 3.786516 TGAAATAGACATCGCGGTGTA 57.213 42.857 27.45 11.85 31.16 2.90
897 2299 2.476619 GGATGAAATAGACATCGCGGTG 59.523 50.000 19.79 19.79 43.24 4.94
898 2300 2.755650 GGATGAAATAGACATCGCGGT 58.244 47.619 6.13 0.00 43.24 5.68
899 2301 1.721389 CGGATGAAATAGACATCGCGG 59.279 52.381 6.13 0.00 43.24 6.46
922 2331 2.008242 TTTGTTTCCTGGGTGGGATG 57.992 50.000 0.00 0.00 35.07 3.51
948 2359 2.032071 GGGGGTGAGGTTGTGTCG 59.968 66.667 0.00 0.00 0.00 4.35
949 2360 2.032071 CGGGGGTGAGGTTGTGTC 59.968 66.667 0.00 0.00 0.00 3.67
950 2361 2.446994 TCGGGGGTGAGGTTGTGT 60.447 61.111 0.00 0.00 0.00 3.72
951 2362 2.347490 CTCGGGGGTGAGGTTGTG 59.653 66.667 0.00 0.00 32.18 3.33
952 2363 3.637273 GCTCGGGGGTGAGGTTGT 61.637 66.667 0.00 0.00 36.47 3.32
953 2364 2.484287 AATGCTCGGGGGTGAGGTTG 62.484 60.000 0.00 0.00 36.47 3.77
954 2365 2.198304 GAATGCTCGGGGGTGAGGTT 62.198 60.000 0.00 0.00 36.47 3.50
955 2366 2.610859 AATGCTCGGGGGTGAGGT 60.611 61.111 0.00 0.00 36.47 3.85
1281 2712 3.069318 GGGGACTTCGCGGACTCT 61.069 66.667 6.13 0.00 0.00 3.24
1290 2721 0.327259 GGTGGTAGTTGGGGGACTTC 59.673 60.000 0.00 0.00 0.00 3.01
1826 4448 1.845205 AGCAGCTCCACTCCCTTGT 60.845 57.895 0.00 0.00 0.00 3.16
1955 4592 1.136695 ACAAACACGTAGTCCGGTGAA 59.863 47.619 0.00 0.00 41.61 3.18
1964 4601 1.191647 GAACGGAGCACAAACACGTAG 59.808 52.381 0.00 0.00 36.69 3.51
1965 4602 1.202440 AGAACGGAGCACAAACACGTA 60.202 47.619 0.00 0.00 36.69 3.57
1966 4603 0.461339 AGAACGGAGCACAAACACGT 60.461 50.000 0.00 0.00 39.74 4.49
1967 4604 1.455786 CTAGAACGGAGCACAAACACG 59.544 52.381 0.00 0.00 0.00 4.49
1968 4605 1.798813 CCTAGAACGGAGCACAAACAC 59.201 52.381 0.00 0.00 0.00 3.32
1969 4606 1.689813 TCCTAGAACGGAGCACAAACA 59.310 47.619 0.00 0.00 0.00 2.83
1970 4607 2.450609 TCCTAGAACGGAGCACAAAC 57.549 50.000 0.00 0.00 0.00 2.93
1971 4608 3.695830 AATCCTAGAACGGAGCACAAA 57.304 42.857 0.00 0.00 36.31 2.83
1972 4609 4.442893 CCATAATCCTAGAACGGAGCACAA 60.443 45.833 0.00 0.00 36.31 3.33
1973 4610 3.069586 CCATAATCCTAGAACGGAGCACA 59.930 47.826 0.00 0.00 36.31 4.57
1974 4611 3.654414 CCATAATCCTAGAACGGAGCAC 58.346 50.000 0.00 0.00 36.31 4.40
1975 4612 2.037251 GCCATAATCCTAGAACGGAGCA 59.963 50.000 0.00 0.00 36.31 4.26
1976 4613 2.689646 GCCATAATCCTAGAACGGAGC 58.310 52.381 0.00 0.00 36.31 4.70
1977 4614 2.557056 TCGCCATAATCCTAGAACGGAG 59.443 50.000 0.00 0.00 36.31 4.63
1978 4615 2.589720 TCGCCATAATCCTAGAACGGA 58.410 47.619 0.00 0.00 37.50 4.69
1979 4616 3.056821 TCATCGCCATAATCCTAGAACGG 60.057 47.826 0.00 0.00 0.00 4.44
1980 4617 4.174411 TCATCGCCATAATCCTAGAACG 57.826 45.455 0.00 0.00 0.00 3.95
1981 4618 8.547967 TTATTTCATCGCCATAATCCTAGAAC 57.452 34.615 0.00 0.00 0.00 3.01
1982 4619 9.739276 ATTTATTTCATCGCCATAATCCTAGAA 57.261 29.630 0.00 0.00 0.00 2.10
1983 4620 9.739276 AATTTATTTCATCGCCATAATCCTAGA 57.261 29.630 0.00 0.00 0.00 2.43
1984 4621 9.778993 CAATTTATTTCATCGCCATAATCCTAG 57.221 33.333 0.00 0.00 0.00 3.02
1985 4622 8.739039 CCAATTTATTTCATCGCCATAATCCTA 58.261 33.333 0.00 0.00 0.00 2.94
1986 4623 7.451255 TCCAATTTATTTCATCGCCATAATCCT 59.549 33.333 0.00 0.00 0.00 3.24
1987 4624 7.601856 TCCAATTTATTTCATCGCCATAATCC 58.398 34.615 0.00 0.00 0.00 3.01
1988 4625 9.643693 AATCCAATTTATTTCATCGCCATAATC 57.356 29.630 0.00 0.00 0.00 1.75
1991 4628 9.906660 GTAAATCCAATTTATTTCATCGCCATA 57.093 29.630 0.00 0.00 37.11 2.74
1992 4629 8.641541 AGTAAATCCAATTTATTTCATCGCCAT 58.358 29.630 0.00 0.00 37.11 4.40
1993 4630 7.920151 CAGTAAATCCAATTTATTTCATCGCCA 59.080 33.333 0.00 0.00 37.11 5.69
1994 4631 7.382218 CCAGTAAATCCAATTTATTTCATCGCC 59.618 37.037 0.00 0.00 37.11 5.54
1995 4632 8.134895 TCCAGTAAATCCAATTTATTTCATCGC 58.865 33.333 0.00 0.00 37.11 4.58
2003 4640 8.749354 GGAGTTGTTCCAGTAAATCCAATTTAT 58.251 33.333 0.00 0.00 46.01 1.40
2004 4641 8.117813 GGAGTTGTTCCAGTAAATCCAATTTA 57.882 34.615 0.00 0.00 46.01 1.40
2005 4642 6.993079 GGAGTTGTTCCAGTAAATCCAATTT 58.007 36.000 0.00 0.00 46.01 1.82
2006 4643 6.590234 GGAGTTGTTCCAGTAAATCCAATT 57.410 37.500 0.00 0.00 46.01 2.32
2019 4656 0.329596 AGGATGGCTGGAGTTGTTCC 59.670 55.000 0.00 0.00 46.98 3.62
2020 4657 1.680249 GGAGGATGGCTGGAGTTGTTC 60.680 57.143 0.00 0.00 0.00 3.18
2021 4658 0.329596 GGAGGATGGCTGGAGTTGTT 59.670 55.000 0.00 0.00 0.00 2.83
2022 4659 0.548682 AGGAGGATGGCTGGAGTTGT 60.549 55.000 0.00 0.00 0.00 3.32
2023 4660 0.107312 CAGGAGGATGGCTGGAGTTG 60.107 60.000 0.00 0.00 0.00 3.16
2024 4661 0.548682 ACAGGAGGATGGCTGGAGTT 60.549 55.000 0.00 0.00 0.00 3.01
2025 4662 0.548682 AACAGGAGGATGGCTGGAGT 60.549 55.000 0.00 0.00 0.00 3.85
2026 4663 0.622665 AAACAGGAGGATGGCTGGAG 59.377 55.000 0.00 0.00 0.00 3.86
2027 4664 0.620556 GAAACAGGAGGATGGCTGGA 59.379 55.000 0.00 0.00 0.00 3.86
2028 4665 0.394899 GGAAACAGGAGGATGGCTGG 60.395 60.000 0.00 0.00 0.00 4.85
2029 4666 0.622665 AGGAAACAGGAGGATGGCTG 59.377 55.000 0.00 0.00 0.00 4.85
2030 4667 0.915364 GAGGAAACAGGAGGATGGCT 59.085 55.000 0.00 0.00 0.00 4.75
2031 4668 0.620556 TGAGGAAACAGGAGGATGGC 59.379 55.000 0.00 0.00 0.00 4.40
2032 4669 1.065126 GGTGAGGAAACAGGAGGATGG 60.065 57.143 0.00 0.00 0.00 3.51
2033 4670 1.912043 AGGTGAGGAAACAGGAGGATG 59.088 52.381 0.00 0.00 0.00 3.51
2034 4671 2.350863 AGGTGAGGAAACAGGAGGAT 57.649 50.000 0.00 0.00 0.00 3.24
2035 4672 2.537143 GTAGGTGAGGAAACAGGAGGA 58.463 52.381 0.00 0.00 0.00 3.71
2036 4673 1.555533 GGTAGGTGAGGAAACAGGAGG 59.444 57.143 0.00 0.00 0.00 4.30
2037 4674 2.498078 GAGGTAGGTGAGGAAACAGGAG 59.502 54.545 0.00 0.00 0.00 3.69
2038 4675 2.111972 AGAGGTAGGTGAGGAAACAGGA 59.888 50.000 0.00 0.00 0.00 3.86
2039 4676 2.498078 GAGAGGTAGGTGAGGAAACAGG 59.502 54.545 0.00 0.00 0.00 4.00
2040 4677 3.165875 TGAGAGGTAGGTGAGGAAACAG 58.834 50.000 0.00 0.00 0.00 3.16
2041 4678 3.254093 TGAGAGGTAGGTGAGGAAACA 57.746 47.619 0.00 0.00 0.00 2.83
2042 4679 4.828072 ATTGAGAGGTAGGTGAGGAAAC 57.172 45.455 0.00 0.00 0.00 2.78
2043 4680 5.309543 TGAAATTGAGAGGTAGGTGAGGAAA 59.690 40.000 0.00 0.00 0.00 3.13
2044 4681 4.844085 TGAAATTGAGAGGTAGGTGAGGAA 59.156 41.667 0.00 0.00 0.00 3.36
2045 4682 4.425772 TGAAATTGAGAGGTAGGTGAGGA 58.574 43.478 0.00 0.00 0.00 3.71
2046 4683 4.383552 CCTGAAATTGAGAGGTAGGTGAGG 60.384 50.000 0.00 0.00 0.00 3.86
2047 4684 4.383552 CCCTGAAATTGAGAGGTAGGTGAG 60.384 50.000 0.00 0.00 0.00 3.51
2048 4685 3.519510 CCCTGAAATTGAGAGGTAGGTGA 59.480 47.826 0.00 0.00 0.00 4.02
2049 4686 3.370953 CCCCTGAAATTGAGAGGTAGGTG 60.371 52.174 0.00 0.00 0.00 4.00
2050 4687 2.846827 CCCCTGAAATTGAGAGGTAGGT 59.153 50.000 0.00 0.00 0.00 3.08
2051 4688 2.422093 GCCCCTGAAATTGAGAGGTAGG 60.422 54.545 0.00 0.00 0.00 3.18
2052 4689 2.422093 GGCCCCTGAAATTGAGAGGTAG 60.422 54.545 0.00 0.00 0.00 3.18
2053 4690 1.564348 GGCCCCTGAAATTGAGAGGTA 59.436 52.381 0.00 0.00 0.00 3.08
2054 4691 0.332972 GGCCCCTGAAATTGAGAGGT 59.667 55.000 0.00 0.00 0.00 3.85
2055 4692 0.627986 AGGCCCCTGAAATTGAGAGG 59.372 55.000 0.00 0.00 0.00 3.69
2056 4693 2.521547 AAGGCCCCTGAAATTGAGAG 57.478 50.000 0.00 0.00 0.00 3.20
2057 4694 2.999185 AAAGGCCCCTGAAATTGAGA 57.001 45.000 0.00 0.00 0.00 3.27
2058 4695 2.428530 GCTAAAGGCCCCTGAAATTGAG 59.571 50.000 0.00 0.00 34.27 3.02
2059 4696 2.042979 AGCTAAAGGCCCCTGAAATTGA 59.957 45.455 0.00 0.00 43.05 2.57
2060 4697 2.460669 AGCTAAAGGCCCCTGAAATTG 58.539 47.619 0.00 0.00 43.05 2.32
2061 4698 2.928036 AGCTAAAGGCCCCTGAAATT 57.072 45.000 0.00 0.00 43.05 1.82
2062 4699 2.928036 AAGCTAAAGGCCCCTGAAAT 57.072 45.000 0.00 0.00 43.05 2.17
2063 4700 2.694616 AAAGCTAAAGGCCCCTGAAA 57.305 45.000 0.00 0.00 43.05 2.69
2064 4701 2.291346 GGTAAAGCTAAAGGCCCCTGAA 60.291 50.000 0.00 0.00 43.05 3.02
2065 4702 1.283905 GGTAAAGCTAAAGGCCCCTGA 59.716 52.381 0.00 0.00 43.05 3.86
2066 4703 1.005450 TGGTAAAGCTAAAGGCCCCTG 59.995 52.381 0.00 0.00 43.05 4.45
2067 4704 1.378732 TGGTAAAGCTAAAGGCCCCT 58.621 50.000 0.00 0.00 43.05 4.79
2068 4705 2.225382 TTGGTAAAGCTAAAGGCCCC 57.775 50.000 0.00 0.00 43.05 5.80
2069 4706 5.596772 TGATAATTGGTAAAGCTAAAGGCCC 59.403 40.000 0.00 0.00 43.05 5.80
2070 4707 6.461092 GGTGATAATTGGTAAAGCTAAAGGCC 60.461 42.308 0.00 0.00 43.05 5.19
2071 4708 6.321435 AGGTGATAATTGGTAAAGCTAAAGGC 59.679 38.462 0.00 0.00 42.19 4.35
2072 4709 7.881775 AGGTGATAATTGGTAAAGCTAAAGG 57.118 36.000 0.00 0.00 0.00 3.11
2073 4710 9.573133 CAAAGGTGATAATTGGTAAAGCTAAAG 57.427 33.333 0.00 0.00 0.00 1.85
2074 4711 9.084533 ACAAAGGTGATAATTGGTAAAGCTAAA 57.915 29.630 0.00 0.00 0.00 1.85
2075 4712 8.644374 ACAAAGGTGATAATTGGTAAAGCTAA 57.356 30.769 0.00 0.00 0.00 3.09
2076 4713 8.644374 AACAAAGGTGATAATTGGTAAAGCTA 57.356 30.769 0.00 0.00 0.00 3.32
2077 4714 7.232534 TGAACAAAGGTGATAATTGGTAAAGCT 59.767 33.333 0.00 0.00 0.00 3.74
2078 4715 7.375053 TGAACAAAGGTGATAATTGGTAAAGC 58.625 34.615 0.00 0.00 0.00 3.51
2081 4718 9.747898 AGTATGAACAAAGGTGATAATTGGTAA 57.252 29.630 0.00 0.00 0.00 2.85
2082 4719 9.747898 AAGTATGAACAAAGGTGATAATTGGTA 57.252 29.630 0.00 0.00 0.00 3.25
2083 4720 8.650143 AAGTATGAACAAAGGTGATAATTGGT 57.350 30.769 0.00 0.00 0.00 3.67
2084 4721 8.190784 GGAAGTATGAACAAAGGTGATAATTGG 58.809 37.037 0.00 0.00 0.00 3.16
2085 4722 8.960591 AGGAAGTATGAACAAAGGTGATAATTG 58.039 33.333 0.00 0.00 0.00 2.32
2086 4723 9.178758 GAGGAAGTATGAACAAAGGTGATAATT 57.821 33.333 0.00 0.00 0.00 1.40
2087 4724 7.775561 GGAGGAAGTATGAACAAAGGTGATAAT 59.224 37.037 0.00 0.00 0.00 1.28
2088 4725 7.110155 GGAGGAAGTATGAACAAAGGTGATAA 58.890 38.462 0.00 0.00 0.00 1.75
2089 4726 6.629515 CGGAGGAAGTATGAACAAAGGTGATA 60.630 42.308 0.00 0.00 0.00 2.15
2090 4727 5.501156 GGAGGAAGTATGAACAAAGGTGAT 58.499 41.667 0.00 0.00 0.00 3.06
2091 4728 4.562757 CGGAGGAAGTATGAACAAAGGTGA 60.563 45.833 0.00 0.00 0.00 4.02
2092 4729 3.684788 CGGAGGAAGTATGAACAAAGGTG 59.315 47.826 0.00 0.00 0.00 4.00
2093 4730 3.326880 ACGGAGGAAGTATGAACAAAGGT 59.673 43.478 0.00 0.00 0.00 3.50
2094 4731 3.939066 ACGGAGGAAGTATGAACAAAGG 58.061 45.455 0.00 0.00 0.00 3.11
2095 4732 4.091509 CGAACGGAGGAAGTATGAACAAAG 59.908 45.833 0.00 0.00 0.00 2.77
2096 4733 3.991773 CGAACGGAGGAAGTATGAACAAA 59.008 43.478 0.00 0.00 0.00 2.83
2097 4734 3.581755 CGAACGGAGGAAGTATGAACAA 58.418 45.455 0.00 0.00 0.00 2.83
2098 4735 2.094390 CCGAACGGAGGAAGTATGAACA 60.094 50.000 7.53 0.00 37.50 3.18
2099 4736 2.165030 TCCGAACGGAGGAAGTATGAAC 59.835 50.000 12.04 0.00 39.76 3.18
2100 4737 2.449464 TCCGAACGGAGGAAGTATGAA 58.551 47.619 12.04 0.00 39.76 2.57
2101 4738 2.133281 TCCGAACGGAGGAAGTATGA 57.867 50.000 12.04 0.00 39.76 2.15
2102 4739 2.953466 TTCCGAACGGAGGAAGTATG 57.047 50.000 15.34 0.00 46.06 2.39
2108 4745 2.564062 ACAAGTAATTCCGAACGGAGGA 59.436 45.455 15.34 3.20 46.06 3.71
2109 4746 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2110 4747 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2111 4748 3.256383 TGAGACAAGTAATTCCGAACGGA 59.744 43.478 12.04 12.04 43.52 4.69
2112 4749 3.581755 TGAGACAAGTAATTCCGAACGG 58.418 45.455 6.94 6.94 0.00 4.44
2113 4750 4.482386 TCTGAGACAAGTAATTCCGAACG 58.518 43.478 0.00 0.00 0.00 3.95
2114 4751 6.780706 TTTCTGAGACAAGTAATTCCGAAC 57.219 37.500 0.00 0.00 0.00 3.95
2115 4752 7.158697 TCATTTCTGAGACAAGTAATTCCGAA 58.841 34.615 0.00 0.00 0.00 4.30
2116 4753 6.697395 TCATTTCTGAGACAAGTAATTCCGA 58.303 36.000 0.00 0.00 0.00 4.55
2117 4754 6.968131 TCATTTCTGAGACAAGTAATTCCG 57.032 37.500 0.00 0.00 0.00 4.30
2118 4755 8.734386 ACATTCATTTCTGAGACAAGTAATTCC 58.266 33.333 0.00 0.00 31.68 3.01
2124 4761 8.446273 CGAATTACATTCATTTCTGAGACAAGT 58.554 33.333 0.00 0.00 39.22 3.16
2125 4762 7.907045 CCGAATTACATTCATTTCTGAGACAAG 59.093 37.037 0.00 0.00 39.22 3.16
2126 4763 7.606073 TCCGAATTACATTCATTTCTGAGACAA 59.394 33.333 0.00 0.00 39.22 3.18
2127 4764 7.102993 TCCGAATTACATTCATTTCTGAGACA 58.897 34.615 0.00 0.00 39.22 3.41
2128 4765 7.539712 TCCGAATTACATTCATTTCTGAGAC 57.460 36.000 0.00 0.00 39.22 3.36
2129 4766 7.280876 CCTTCCGAATTACATTCATTTCTGAGA 59.719 37.037 0.00 0.00 39.22 3.27
2130 4767 7.280876 TCCTTCCGAATTACATTCATTTCTGAG 59.719 37.037 0.00 0.00 39.22 3.35
2131 4768 7.109501 TCCTTCCGAATTACATTCATTTCTGA 58.890 34.615 0.00 0.00 39.22 3.27
2132 4769 7.320443 TCCTTCCGAATTACATTCATTTCTG 57.680 36.000 0.00 0.00 39.22 3.02
2133 4770 7.067494 CCTTCCTTCCGAATTACATTCATTTCT 59.933 37.037 0.00 0.00 39.22 2.52
2134 4771 7.196331 CCTTCCTTCCGAATTACATTCATTTC 58.804 38.462 0.00 0.00 39.22 2.17
2135 4772 6.096846 CCCTTCCTTCCGAATTACATTCATTT 59.903 38.462 0.00 0.00 39.22 2.32
2136 4773 5.594317 CCCTTCCTTCCGAATTACATTCATT 59.406 40.000 0.00 0.00 39.22 2.57
2137 4774 5.104109 TCCCTTCCTTCCGAATTACATTCAT 60.104 40.000 0.00 0.00 39.22 2.57
2138 4775 4.226394 TCCCTTCCTTCCGAATTACATTCA 59.774 41.667 0.00 0.00 39.22 2.57
2139 4776 4.777463 TCCCTTCCTTCCGAATTACATTC 58.223 43.478 0.00 0.00 35.94 2.67
2140 4777 4.227527 ACTCCCTTCCTTCCGAATTACATT 59.772 41.667 0.00 0.00 0.00 2.71
2141 4778 3.780850 ACTCCCTTCCTTCCGAATTACAT 59.219 43.478 0.00 0.00 0.00 2.29
2142 4779 3.178865 ACTCCCTTCCTTCCGAATTACA 58.821 45.455 0.00 0.00 0.00 2.41
2143 4780 3.908643 ACTCCCTTCCTTCCGAATTAC 57.091 47.619 0.00 0.00 0.00 1.89
2144 4781 4.617593 AGTACTCCCTTCCTTCCGAATTA 58.382 43.478 0.00 0.00 0.00 1.40
2145 4782 3.451890 AGTACTCCCTTCCTTCCGAATT 58.548 45.455 0.00 0.00 0.00 2.17
2146 4783 3.117552 AGTACTCCCTTCCTTCCGAAT 57.882 47.619 0.00 0.00 0.00 3.34
2147 4784 2.617840 AGTACTCCCTTCCTTCCGAA 57.382 50.000 0.00 0.00 0.00 4.30
2148 4785 2.617840 AAGTACTCCCTTCCTTCCGA 57.382 50.000 0.00 0.00 0.00 4.55
2149 4786 2.429971 GGTAAGTACTCCCTTCCTTCCG 59.570 54.545 0.00 0.00 0.00 4.30
2150 4787 3.447950 TGGTAAGTACTCCCTTCCTTCC 58.552 50.000 11.62 0.00 0.00 3.46
2151 4788 6.610425 TCTTATGGTAAGTACTCCCTTCCTTC 59.390 42.308 11.62 0.00 0.00 3.46
2152 4789 6.383436 GTCTTATGGTAAGTACTCCCTTCCTT 59.617 42.308 11.62 4.95 0.00 3.36
2153 4790 5.898397 GTCTTATGGTAAGTACTCCCTTCCT 59.102 44.000 11.62 0.00 0.00 3.36
2154 4791 5.659971 TGTCTTATGGTAAGTACTCCCTTCC 59.340 44.000 11.62 4.59 0.00 3.46
2155 4792 6.786967 TGTCTTATGGTAAGTACTCCCTTC 57.213 41.667 11.62 0.00 0.00 3.46
2156 4793 7.750947 AATGTCTTATGGTAAGTACTCCCTT 57.249 36.000 11.62 8.49 0.00 3.95
2157 4794 7.750947 AAATGTCTTATGGTAAGTACTCCCT 57.249 36.000 11.62 0.00 0.00 4.20
2198 4835 9.601217 ACTCGTTTCTGTAGCTCATATTAAAAT 57.399 29.630 0.00 0.00 0.00 1.82
2199 4836 8.997621 ACTCGTTTCTGTAGCTCATATTAAAA 57.002 30.769 0.00 0.00 0.00 1.52
2202 4839 9.512435 GTTTACTCGTTTCTGTAGCTCATATTA 57.488 33.333 0.00 0.00 0.00 0.98
2203 4840 8.033038 TGTTTACTCGTTTCTGTAGCTCATATT 58.967 33.333 0.00 0.00 0.00 1.28
2204 4841 7.544622 TGTTTACTCGTTTCTGTAGCTCATAT 58.455 34.615 0.00 0.00 0.00 1.78
2205 4842 6.916440 TGTTTACTCGTTTCTGTAGCTCATA 58.084 36.000 0.00 0.00 0.00 2.15
2206 4843 5.779922 TGTTTACTCGTTTCTGTAGCTCAT 58.220 37.500 0.00 0.00 0.00 2.90
2207 4844 5.190992 TGTTTACTCGTTTCTGTAGCTCA 57.809 39.130 0.00 0.00 0.00 4.26
2208 4845 6.346678 CCTTTGTTTACTCGTTTCTGTAGCTC 60.347 42.308 0.00 0.00 0.00 4.09
2209 4846 5.465724 CCTTTGTTTACTCGTTTCTGTAGCT 59.534 40.000 0.00 0.00 0.00 3.32
2210 4847 5.676953 CCTTTGTTTACTCGTTTCTGTAGC 58.323 41.667 0.00 0.00 0.00 3.58
2211 4848 5.235616 TGCCTTTGTTTACTCGTTTCTGTAG 59.764 40.000 0.00 0.00 0.00 2.74
2212 4849 5.117584 TGCCTTTGTTTACTCGTTTCTGTA 58.882 37.500 0.00 0.00 0.00 2.74
2213 4850 3.942748 TGCCTTTGTTTACTCGTTTCTGT 59.057 39.130 0.00 0.00 0.00 3.41
2214 4851 4.545823 TGCCTTTGTTTACTCGTTTCTG 57.454 40.909 0.00 0.00 0.00 3.02
2215 4852 5.767816 AATGCCTTTGTTTACTCGTTTCT 57.232 34.783 0.00 0.00 0.00 2.52
2216 4853 8.515473 AATTAATGCCTTTGTTTACTCGTTTC 57.485 30.769 0.00 0.00 0.00 2.78
2217 4854 9.968870 TTAATTAATGCCTTTGTTTACTCGTTT 57.031 25.926 0.00 0.00 0.00 3.60
2218 4855 9.968870 TTTAATTAATGCCTTTGTTTACTCGTT 57.031 25.926 0.00 0.00 0.00 3.85
2219 4856 9.968870 TTTTAATTAATGCCTTTGTTTACTCGT 57.031 25.926 0.00 0.00 0.00 4.18
2271 4908 9.367444 CCGTACTGAAATAAGATGTTCTAACTT 57.633 33.333 0.00 0.00 0.00 2.66
2272 4909 8.746530 TCCGTACTGAAATAAGATGTTCTAACT 58.253 33.333 0.00 0.00 0.00 2.24
2273 4910 8.805688 GTCCGTACTGAAATAAGATGTTCTAAC 58.194 37.037 0.00 0.00 0.00 2.34
2274 4911 7.699391 CGTCCGTACTGAAATAAGATGTTCTAA 59.301 37.037 0.00 0.00 0.00 2.10
2275 4912 7.191551 CGTCCGTACTGAAATAAGATGTTCTA 58.808 38.462 0.00 0.00 0.00 2.10
2276 4913 6.034591 CGTCCGTACTGAAATAAGATGTTCT 58.965 40.000 0.00 0.00 0.00 3.01
2277 4914 5.231568 CCGTCCGTACTGAAATAAGATGTTC 59.768 44.000 0.00 0.00 0.00 3.18
2278 4915 5.105635 TCCGTCCGTACTGAAATAAGATGTT 60.106 40.000 0.00 0.00 0.00 2.71
2279 4916 4.400251 TCCGTCCGTACTGAAATAAGATGT 59.600 41.667 0.00 0.00 0.00 3.06
2280 4917 4.928601 TCCGTCCGTACTGAAATAAGATG 58.071 43.478 0.00 0.00 0.00 2.90
2281 4918 4.643784 ACTCCGTCCGTACTGAAATAAGAT 59.356 41.667 0.00 0.00 0.00 2.40
2282 4919 4.012374 ACTCCGTCCGTACTGAAATAAGA 58.988 43.478 0.00 0.00 0.00 2.10
2283 4920 4.367386 ACTCCGTCCGTACTGAAATAAG 57.633 45.455 0.00 0.00 0.00 1.73
2284 4921 7.750229 ATATACTCCGTCCGTACTGAAATAA 57.250 36.000 0.00 0.00 0.00 1.40
2285 4922 7.750229 AATATACTCCGTCCGTACTGAAATA 57.250 36.000 0.00 0.00 0.00 1.40
2286 4923 6.645790 AATATACTCCGTCCGTACTGAAAT 57.354 37.500 0.00 0.00 0.00 2.17
2287 4924 6.455360 AAATATACTCCGTCCGTACTGAAA 57.545 37.500 0.00 0.00 0.00 2.69
2288 4925 6.455360 AAAATATACTCCGTCCGTACTGAA 57.545 37.500 0.00 0.00 0.00 3.02
2289 4926 7.750229 ATAAAATATACTCCGTCCGTACTGA 57.250 36.000 0.00 0.00 0.00 3.41
2290 4927 7.864379 ACAATAAAATATACTCCGTCCGTACTG 59.136 37.037 0.00 0.00 0.00 2.74
2291 4928 7.945134 ACAATAAAATATACTCCGTCCGTACT 58.055 34.615 0.00 0.00 0.00 2.73
2292 4929 9.846248 ATACAATAAAATATACTCCGTCCGTAC 57.154 33.333 0.00 0.00 0.00 3.67
2312 4949 9.097257 CCAAATCGCCAAAAGAAAATATACAAT 57.903 29.630 0.00 0.00 0.00 2.71
2313 4950 8.091449 ACCAAATCGCCAAAAGAAAATATACAA 58.909 29.630 0.00 0.00 0.00 2.41
2314 4951 7.607250 ACCAAATCGCCAAAAGAAAATATACA 58.393 30.769 0.00 0.00 0.00 2.29
2315 4952 8.379902 CAACCAAATCGCCAAAAGAAAATATAC 58.620 33.333 0.00 0.00 0.00 1.47
2316 4953 8.091449 ACAACCAAATCGCCAAAAGAAAATATA 58.909 29.630 0.00 0.00 0.00 0.86
2317 4954 6.934083 ACAACCAAATCGCCAAAAGAAAATAT 59.066 30.769 0.00 0.00 0.00 1.28
2318 4955 6.284459 ACAACCAAATCGCCAAAAGAAAATA 58.716 32.000 0.00 0.00 0.00 1.40
2319 4956 5.122519 ACAACCAAATCGCCAAAAGAAAAT 58.877 33.333 0.00 0.00 0.00 1.82
2320 4957 4.508662 ACAACCAAATCGCCAAAAGAAAA 58.491 34.783 0.00 0.00 0.00 2.29
2321 4958 4.130286 ACAACCAAATCGCCAAAAGAAA 57.870 36.364 0.00 0.00 0.00 2.52
2322 4959 3.810310 ACAACCAAATCGCCAAAAGAA 57.190 38.095 0.00 0.00 0.00 2.52
2323 4960 3.810310 AACAACCAAATCGCCAAAAGA 57.190 38.095 0.00 0.00 0.00 2.52
2324 4961 3.428534 GCTAACAACCAAATCGCCAAAAG 59.571 43.478 0.00 0.00 0.00 2.27
2325 4962 3.181475 TGCTAACAACCAAATCGCCAAAA 60.181 39.130 0.00 0.00 0.00 2.44
2326 4963 2.362397 TGCTAACAACCAAATCGCCAAA 59.638 40.909 0.00 0.00 0.00 3.28
2327 4964 1.957177 TGCTAACAACCAAATCGCCAA 59.043 42.857 0.00 0.00 0.00 4.52
2328 4965 1.610363 TGCTAACAACCAAATCGCCA 58.390 45.000 0.00 0.00 0.00 5.69
2329 4966 2.939460 ATGCTAACAACCAAATCGCC 57.061 45.000 0.00 0.00 0.00 5.54
2330 4967 3.181531 GCAAATGCTAACAACCAAATCGC 60.182 43.478 0.00 0.00 38.21 4.58
2331 4968 3.986572 TGCAAATGCTAACAACCAAATCG 59.013 39.130 6.97 0.00 42.66 3.34
2332 4969 4.143347 CGTGCAAATGCTAACAACCAAATC 60.143 41.667 6.97 0.00 42.66 2.17
2333 4970 3.740321 CGTGCAAATGCTAACAACCAAAT 59.260 39.130 6.97 0.00 42.66 2.32
2334 4971 3.119291 CGTGCAAATGCTAACAACCAAA 58.881 40.909 6.97 0.00 42.66 3.28
2335 4972 2.359214 TCGTGCAAATGCTAACAACCAA 59.641 40.909 6.97 0.00 42.66 3.67
2336 4973 1.950216 TCGTGCAAATGCTAACAACCA 59.050 42.857 6.97 0.00 42.66 3.67
2337 4974 2.697431 TCGTGCAAATGCTAACAACC 57.303 45.000 6.97 0.00 42.66 3.77
2338 4975 3.297979 CGAATCGTGCAAATGCTAACAAC 59.702 43.478 6.97 0.00 42.66 3.32
2339 4976 3.487536 CGAATCGTGCAAATGCTAACAA 58.512 40.909 6.97 0.00 42.66 2.83
2340 4977 2.159585 CCGAATCGTGCAAATGCTAACA 60.160 45.455 6.97 0.00 42.66 2.41
2341 4978 2.159572 ACCGAATCGTGCAAATGCTAAC 60.160 45.455 6.97 0.00 42.66 2.34
2342 4979 2.080693 ACCGAATCGTGCAAATGCTAA 58.919 42.857 6.97 0.00 42.66 3.09
2343 4980 1.732941 ACCGAATCGTGCAAATGCTA 58.267 45.000 6.97 0.00 42.66 3.49
2344 4981 0.881118 AACCGAATCGTGCAAATGCT 59.119 45.000 6.97 0.00 42.66 3.79
2345 4982 0.984109 CAACCGAATCGTGCAAATGC 59.016 50.000 0.82 0.00 42.50 3.56
2346 4983 2.330231 ACAACCGAATCGTGCAAATG 57.670 45.000 0.82 0.00 0.00 2.32
2347 4984 2.664424 CGAACAACCGAATCGTGCAAAT 60.664 45.455 0.82 0.00 0.00 2.32
2348 4985 1.333347 CGAACAACCGAATCGTGCAAA 60.333 47.619 0.82 0.00 0.00 3.68
2349 4986 0.233590 CGAACAACCGAATCGTGCAA 59.766 50.000 0.82 0.00 0.00 4.08
2350 4987 0.876777 ACGAACAACCGAATCGTGCA 60.877 50.000 0.82 0.00 46.90 4.57
2351 4988 1.857364 ACGAACAACCGAATCGTGC 59.143 52.632 0.82 0.00 46.90 5.34
2354 4991 2.150424 GCAAAAACGAACAACCGAATCG 59.850 45.455 0.00 0.00 42.05 3.34
2355 4992 3.179599 CAGCAAAAACGAACAACCGAATC 59.820 43.478 0.00 0.00 0.00 2.52
2356 4993 3.112580 CAGCAAAAACGAACAACCGAAT 58.887 40.909 0.00 0.00 0.00 3.34
2357 4994 2.161808 TCAGCAAAAACGAACAACCGAA 59.838 40.909 0.00 0.00 0.00 4.30
2358 4995 1.738350 TCAGCAAAAACGAACAACCGA 59.262 42.857 0.00 0.00 0.00 4.69
2359 4996 2.108700 CTCAGCAAAAACGAACAACCG 58.891 47.619 0.00 0.00 0.00 4.44
2360 4997 2.851824 CACTCAGCAAAAACGAACAACC 59.148 45.455 0.00 0.00 0.00 3.77
2361 4998 2.278875 GCACTCAGCAAAAACGAACAAC 59.721 45.455 0.00 0.00 44.79 3.32
2362 4999 2.525055 GCACTCAGCAAAAACGAACAA 58.475 42.857 0.00 0.00 44.79 2.83
2363 5000 2.187351 GCACTCAGCAAAAACGAACA 57.813 45.000 0.00 0.00 44.79 3.18
2374 5011 1.211969 CCATTGCACAGCACTCAGC 59.788 57.895 0.00 0.00 38.71 4.26
2375 5012 0.520404 GTCCATTGCACAGCACTCAG 59.480 55.000 0.00 0.00 38.71 3.35
2376 5013 0.109153 AGTCCATTGCACAGCACTCA 59.891 50.000 0.00 0.00 38.71 3.41
2377 5014 0.520404 CAGTCCATTGCACAGCACTC 59.480 55.000 0.00 0.00 38.71 3.51
2378 5015 1.521450 GCAGTCCATTGCACAGCACT 61.521 55.000 0.00 0.00 43.53 4.40
2379 5016 1.080974 GCAGTCCATTGCACAGCAC 60.081 57.895 0.00 0.00 43.53 4.40
2380 5017 0.824595 AAGCAGTCCATTGCACAGCA 60.825 50.000 0.00 0.00 46.47 4.41
2381 5018 0.388134 CAAGCAGTCCATTGCACAGC 60.388 55.000 0.52 0.00 46.47 4.40
2382 5019 3.786809 CAAGCAGTCCATTGCACAG 57.213 52.632 0.52 0.00 46.47 3.66
2387 5024 0.245539 CCAAGGCAAGCAGTCCATTG 59.754 55.000 0.00 0.00 0.00 2.82
2388 5025 0.901580 CCCAAGGCAAGCAGTCCATT 60.902 55.000 0.00 0.00 0.00 3.16
2389 5026 1.304713 CCCAAGGCAAGCAGTCCAT 60.305 57.895 0.00 0.00 0.00 3.41
2390 5027 2.115910 CCCAAGGCAAGCAGTCCA 59.884 61.111 0.00 0.00 0.00 4.02
2404 5041 6.305272 TGCAAAAATAATAATTGGAGCCCA 57.695 33.333 0.00 0.00 0.00 5.36
2405 5042 6.991531 TCATGCAAAAATAATAATTGGAGCCC 59.008 34.615 0.00 0.00 0.00 5.19
2406 5043 8.611654 ATCATGCAAAAATAATAATTGGAGCC 57.388 30.769 0.00 0.00 0.00 4.70
2463 5100 8.166706 CAGGTTGATTTATACGTGTCTTGTAAC 58.833 37.037 0.00 0.00 0.00 2.50
2464 5101 7.332430 CCAGGTTGATTTATACGTGTCTTGTAA 59.668 37.037 0.00 0.00 0.00 2.41
2478 5115 3.838565 TCAGGTTTGCCAGGTTGATTTA 58.161 40.909 0.00 0.00 37.19 1.40
2484 5121 1.063266 TCCTTTCAGGTTTGCCAGGTT 60.063 47.619 0.00 0.00 36.53 3.50
2495 5132 3.152341 AGTGATTTGCTGTCCTTTCAGG 58.848 45.455 0.00 0.00 36.12 3.86
2502 5139 2.409948 AGGCTAGTGATTTGCTGTCC 57.590 50.000 0.00 0.00 0.00 4.02
2524 5161 1.846007 TGGCTGTTGTTCCTTTGTGT 58.154 45.000 0.00 0.00 0.00 3.72
2574 5211 1.124780 TTGGTGTCAAGTTCCGAGGA 58.875 50.000 0.00 0.00 0.00 3.71
2579 5216 1.652563 GGCGTTGGTGTCAAGTTCC 59.347 57.895 0.00 0.00 32.92 3.62
2613 5250 0.611896 GGTGGCTGCTATGGTGGTTT 60.612 55.000 0.00 0.00 0.00 3.27
2729 7988 6.557291 TTCGTTCAACGGTAATGGTTTTAT 57.443 33.333 10.69 0.00 42.81 1.40
2730 7989 5.998454 TTCGTTCAACGGTAATGGTTTTA 57.002 34.783 10.69 0.00 42.81 1.52
2731 7990 4.897025 TTCGTTCAACGGTAATGGTTTT 57.103 36.364 10.69 0.00 42.81 2.43
2764 8024 2.030862 GGCGTGTTCGGGGTGTTA 59.969 61.111 0.00 0.00 37.56 2.41
2899 8161 1.676916 CGGATGCAGATTGTGGTCTGT 60.677 52.381 5.87 0.00 45.80 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.