Multiple sequence alignment - TraesCS3B01G140500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G140500 chr3B 100.000 3416 0 0 1 3416 126665584 126662169 0.000000e+00 6309.0
1 TraesCS3B01G140500 chr3B 87.487 1878 151 29 810 2639 126733782 126731941 0.000000e+00 2089.0
2 TraesCS3B01G140500 chr3B 82.300 1565 211 28 857 2376 126400940 126399397 0.000000e+00 1295.0
3 TraesCS3B01G140500 chr3B 82.849 1411 194 17 996 2376 126459015 126457623 0.000000e+00 1221.0
4 TraesCS3B01G140500 chr3B 95.377 584 25 2 2833 3416 21504448 21503867 0.000000e+00 928.0
5 TraesCS3B01G140500 chr3B 93.846 585 32 2 2832 3416 796845040 796845620 0.000000e+00 878.0
6 TraesCS3B01G140500 chr3B 89.725 545 38 5 860 1389 126715202 126714661 0.000000e+00 680.0
7 TraesCS3B01G140500 chr3B 86.141 368 26 7 810 1165 126755520 126755166 1.160000e-99 374.0
8 TraesCS3B01G140500 chr3B 91.089 101 9 0 504 604 126755632 126755532 1.650000e-28 137.0
9 TraesCS3B01G140500 chr3B 91.429 70 5 1 9 77 92740653 92740584 1.010000e-15 95.3
10 TraesCS3B01G140500 chr3A 94.621 1766 69 9 853 2593 95127530 95125766 0.000000e+00 2712.0
11 TraesCS3B01G140500 chr3A 88.172 2029 174 30 853 2834 95359835 95357826 0.000000e+00 2357.0
12 TraesCS3B01G140500 chr3A 91.171 1563 95 18 903 2432 95134590 95133038 0.000000e+00 2082.0
13 TraesCS3B01G140500 chr3A 82.532 1185 164 16 1222 2376 94384152 94382981 0.000000e+00 1002.0
14 TraesCS3B01G140500 chr3A 82.450 547 51 19 4 508 95128525 95127982 1.460000e-118 436.0
15 TraesCS3B01G140500 chr3A 79.368 601 55 28 37 589 95135856 95135277 3.240000e-95 359.0
16 TraesCS3B01G140500 chr3A 90.535 243 20 2 266 507 95360230 95359990 5.500000e-83 318.0
17 TraesCS3B01G140500 chr3A 87.279 283 28 5 500 775 95127951 95127670 1.980000e-82 316.0
18 TraesCS3B01G140500 chr3A 98.718 78 1 0 2759 2836 95118368 95118291 4.600000e-29 139.0
19 TraesCS3B01G140500 chr3D 88.772 1799 146 24 853 2617 81122337 81120561 0.000000e+00 2152.0
20 TraesCS3B01G140500 chr3D 96.228 1087 41 0 1542 2628 81057149 81056063 0.000000e+00 1781.0
21 TraesCS3B01G140500 chr3D 89.252 1070 73 16 500 1544 81058233 81057181 0.000000e+00 1301.0
22 TraesCS3B01G140500 chr3D 82.863 1418 187 21 996 2376 80630474 80629076 0.000000e+00 1221.0
23 TraesCS3B01G140500 chr3D 88.462 494 32 13 37 507 81058755 81058264 1.060000e-159 573.0
24 TraesCS3B01G140500 chr3D 81.463 588 90 10 857 1436 80917639 80917063 6.680000e-127 464.0
25 TraesCS3B01G140500 chr3D 90.535 243 20 3 266 505 81122736 81122494 5.500000e-83 318.0
26 TraesCS3B01G140500 chr3D 95.588 68 3 0 2769 2836 81056065 81055998 3.600000e-20 110.0
27 TraesCS3B01G140500 chr3D 90.476 63 5 1 2775 2836 81120301 81120239 7.860000e-12 82.4
28 TraesCS3B01G140500 chr5B 94.521 584 30 2 2833 3416 322442925 322442344 0.000000e+00 900.0
29 TraesCS3B01G140500 chr5B 84.138 145 15 7 4 142 639158452 639158310 2.140000e-27 134.0
30 TraesCS3B01G140500 chr5B 90.769 65 5 1 4 68 62980374 62980311 6.070000e-13 86.1
31 TraesCS3B01G140500 chr5B 93.478 46 2 1 163 207 546565853 546565808 2.200000e-07 67.6
32 TraesCS3B01G140500 chr2B 94.521 584 31 1 2833 3416 662828633 662829215 0.000000e+00 900.0
33 TraesCS3B01G140500 chr4B 94.218 588 33 1 2829 3416 557457609 557458195 0.000000e+00 896.0
34 TraesCS3B01G140500 chr4B 84.211 114 15 3 153 264 11569417 11569305 1.300000e-19 108.0
35 TraesCS3B01G140500 chr4B 92.754 69 5 0 9 77 74329459 74329527 2.170000e-17 100.0
36 TraesCS3B01G140500 chr1B 94.007 584 34 1 2833 3416 152017131 152016549 0.000000e+00 883.0
37 TraesCS3B01G140500 chr6B 93.445 595 37 2 2823 3416 81983043 81983636 0.000000e+00 881.0
38 TraesCS3B01G140500 chr4A 93.654 583 35 1 2833 3415 101396255 101396835 0.000000e+00 870.0
39 TraesCS3B01G140500 chr7B 93.493 584 37 1 2833 3416 589047111 589046529 0.000000e+00 867.0
40 TraesCS3B01G140500 chr7A 89.362 141 13 2 4 142 664500486 664500346 3.500000e-40 176.0
41 TraesCS3B01G140500 chr7A 77.477 111 22 3 154 261 712807749 712807859 2.850000e-06 63.9
42 TraesCS3B01G140500 chr5A 85.430 151 8 9 4 142 445064392 445064540 9.880000e-31 145.0
43 TraesCS3B01G140500 chr5A 95.385 65 3 0 4 68 552364678 552364742 1.680000e-18 104.0
44 TraesCS3B01G140500 chr5D 84.000 150 12 4 5 142 346182932 346182783 2.140000e-27 134.0
45 TraesCS3B01G140500 chr2D 80.870 115 16 4 7 115 18245195 18245309 6.070000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G140500 chr3B 126662169 126665584 3415 True 6309.000000 6309 100.000000 1 3416 1 chr3B.!!$R5 3415
1 TraesCS3B01G140500 chr3B 126731941 126733782 1841 True 2089.000000 2089 87.487000 810 2639 1 chr3B.!!$R7 1829
2 TraesCS3B01G140500 chr3B 126399397 126400940 1543 True 1295.000000 1295 82.300000 857 2376 1 chr3B.!!$R3 1519
3 TraesCS3B01G140500 chr3B 126457623 126459015 1392 True 1221.000000 1221 82.849000 996 2376 1 chr3B.!!$R4 1380
4 TraesCS3B01G140500 chr3B 21503867 21504448 581 True 928.000000 928 95.377000 2833 3416 1 chr3B.!!$R1 583
5 TraesCS3B01G140500 chr3B 796845040 796845620 580 False 878.000000 878 93.846000 2832 3416 1 chr3B.!!$F1 584
6 TraesCS3B01G140500 chr3B 126714661 126715202 541 True 680.000000 680 89.725000 860 1389 1 chr3B.!!$R6 529
7 TraesCS3B01G140500 chr3A 95357826 95360230 2404 True 1337.500000 2357 89.353500 266 2834 2 chr3A.!!$R5 2568
8 TraesCS3B01G140500 chr3A 95133038 95135856 2818 True 1220.500000 2082 85.269500 37 2432 2 chr3A.!!$R4 2395
9 TraesCS3B01G140500 chr3A 95125766 95128525 2759 True 1154.666667 2712 88.116667 4 2593 3 chr3A.!!$R3 2589
10 TraesCS3B01G140500 chr3A 94382981 94384152 1171 True 1002.000000 1002 82.532000 1222 2376 1 chr3A.!!$R1 1154
11 TraesCS3B01G140500 chr3D 80629076 80630474 1398 True 1221.000000 1221 82.863000 996 2376 1 chr3D.!!$R1 1380
12 TraesCS3B01G140500 chr3D 81055998 81058755 2757 True 941.250000 1781 92.382500 37 2836 4 chr3D.!!$R3 2799
13 TraesCS3B01G140500 chr3D 81120239 81122736 2497 True 850.800000 2152 89.927667 266 2836 3 chr3D.!!$R4 2570
14 TraesCS3B01G140500 chr3D 80917063 80917639 576 True 464.000000 464 81.463000 857 1436 1 chr3D.!!$R2 579
15 TraesCS3B01G140500 chr5B 322442344 322442925 581 True 900.000000 900 94.521000 2833 3416 1 chr5B.!!$R2 583
16 TraesCS3B01G140500 chr2B 662828633 662829215 582 False 900.000000 900 94.521000 2833 3416 1 chr2B.!!$F1 583
17 TraesCS3B01G140500 chr4B 557457609 557458195 586 False 896.000000 896 94.218000 2829 3416 1 chr4B.!!$F2 587
18 TraesCS3B01G140500 chr1B 152016549 152017131 582 True 883.000000 883 94.007000 2833 3416 1 chr1B.!!$R1 583
19 TraesCS3B01G140500 chr6B 81983043 81983636 593 False 881.000000 881 93.445000 2823 3416 1 chr6B.!!$F1 593
20 TraesCS3B01G140500 chr4A 101396255 101396835 580 False 870.000000 870 93.654000 2833 3415 1 chr4A.!!$F1 582
21 TraesCS3B01G140500 chr7B 589046529 589047111 582 True 867.000000 867 93.493000 2833 3416 1 chr7B.!!$R1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
822 1319 1.083806 CGCGGTGAGCTGCTAAATGA 61.084 55.0 0.15 0.0 44.55 2.57 F
1308 1939 0.108186 CAAGCGAGTACCTGATGGCA 60.108 55.0 0.00 0.0 36.63 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2298 3016 1.207593 GTTCTGCTGCGCGATGTTT 59.792 52.632 12.1 0.0 0.0 2.83 R
2432 3157 1.228124 CACCCAGCGGAACCTCAAA 60.228 57.895 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 96 9.734620 ACATACATTGATGTTATGTTAATGCAC 57.265 29.630 1.46 0.00 41.97 4.57
159 195 1.119684 CAGATACACCCCCGATGACA 58.880 55.000 0.00 0.00 0.00 3.58
160 196 1.120530 AGATACACCCCCGATGACAC 58.879 55.000 0.00 0.00 0.00 3.67
161 197 1.120530 GATACACCCCCGATGACACT 58.879 55.000 0.00 0.00 0.00 3.55
218 256 6.486253 TCTTCGTCCTTCATTCAAAATCAG 57.514 37.500 0.00 0.00 0.00 2.90
223 261 6.430925 TCGTCCTTCATTCAAAATCAGTTGAT 59.569 34.615 0.00 0.00 37.36 2.57
264 302 4.513442 TGGCTAACATGTAGCTAAAGTGG 58.487 43.478 19.76 0.00 40.25 4.00
313 351 4.559153 CAGAAAAGTGCGGAATGGAATTT 58.441 39.130 0.00 0.00 37.84 1.82
357 401 3.056749 AGCGAGACGTAGAACAAAAGGAT 60.057 43.478 0.00 0.00 0.00 3.24
370 414 3.892588 ACAAAAGGATGCTTAAACGGGAA 59.107 39.130 0.00 0.00 0.00 3.97
382 426 6.594937 TGCTTAAACGGGAAAACGATTACTAT 59.405 34.615 0.00 0.00 32.16 2.12
486 531 9.213799 GATAATCCTCCTTCTACAAATTAGCTG 57.786 37.037 0.00 0.00 0.00 4.24
487 532 6.567602 ATCCTCCTTCTACAAATTAGCTGT 57.432 37.500 0.00 0.00 0.00 4.40
671 844 7.530010 ACATAAAAGTGATAGCATTGACACAC 58.470 34.615 0.00 0.00 35.97 3.82
730 909 9.797473 GAAGCATAAAAAGAAAAGGAAAAATCG 57.203 29.630 0.00 0.00 0.00 3.34
733 912 9.797473 GCATAAAAAGAAAAGGAAAAATCGAAG 57.203 29.630 0.00 0.00 0.00 3.79
759 938 9.535878 GAGAAAAATACTCAGATAAATCTCCGT 57.464 33.333 0.00 0.00 34.22 4.69
775 954 7.772332 AATCTCCGTGTAAGATTAATGACAC 57.228 36.000 12.02 12.02 40.74 3.67
779 967 6.097356 TCCGTGTAAGATTAATGACACAGAC 58.903 40.000 18.13 0.54 41.83 3.51
822 1319 1.083806 CGCGGTGAGCTGCTAAATGA 61.084 55.000 0.15 0.00 44.55 2.57
841 1338 6.889301 AATGACACTCAACAGTTCATGAAT 57.111 33.333 12.12 0.00 33.89 2.57
884 1465 1.445582 CCCGACTTACCACACTCGC 60.446 63.158 0.00 0.00 0.00 5.03
945 1537 2.490903 TCGCCTATAAATACCGCTCTCC 59.509 50.000 0.00 0.00 0.00 3.71
952 1544 1.617322 AATACCGCTCTCCGCATAGA 58.383 50.000 0.00 0.00 39.08 1.98
1308 1939 0.108186 CAAGCGAGTACCTGATGGCA 60.108 55.000 0.00 0.00 36.63 4.92
1386 2017 0.401356 TCACCTGGCTCAATTGCAGA 59.599 50.000 11.74 0.00 34.04 4.26
1683 2384 0.594796 GCGTGGCCAAAGTCAACTTG 60.595 55.000 7.24 0.00 36.12 3.16
1712 2413 2.202453 GACCTTCGTCGGCTCGTC 60.202 66.667 0.00 0.00 0.00 4.20
1836 2537 1.433879 CTACTCCGTCAAGGCCTCG 59.566 63.158 5.23 5.32 40.77 4.63
1910 2611 2.281345 GCCGCTGATCCCATCCAG 60.281 66.667 0.00 0.00 0.00 3.86
2065 2768 0.764369 ACTGGTGAAGGAGCTGACCA 60.764 55.000 0.00 0.00 36.98 4.02
2125 2828 2.281970 CCCTGCTGCTGTGCTTCA 60.282 61.111 0.00 0.00 0.00 3.02
2271 2989 0.541392 TATGCTTGGCGGTGTCTGAT 59.459 50.000 0.00 0.00 0.00 2.90
2298 3016 1.114627 CTCCTGTGTCCATCATCGGA 58.885 55.000 0.00 0.00 0.00 4.55
2398 3116 4.900259 CCTACCCCGCCCCCTCAT 62.900 72.222 0.00 0.00 0.00 2.90
2504 3231 5.603170 AAGATTTGTGGGCAGAATAATGG 57.397 39.130 0.00 0.00 0.00 3.16
2518 3258 6.480320 GCAGAATAATGGATAACTCGTGAACT 59.520 38.462 0.00 0.00 0.00 3.01
2618 3366 5.192927 TGATGGCCCTACAAAAATCTACAG 58.807 41.667 0.00 0.00 0.00 2.74
2626 3374 8.736244 GCCCTACAAAAATCTACAGACATTTTA 58.264 33.333 4.97 0.00 32.22 1.52
2681 3570 6.865651 AAACTTCCAATATAATCCCCTCCT 57.134 37.500 0.00 0.00 0.00 3.69
2682 3571 6.865651 AACTTCCAATATAATCCCCTCCTT 57.134 37.500 0.00 0.00 0.00 3.36
2696 3585 3.703052 CCCCTCCTTCTGAATTCAATTGG 59.297 47.826 9.88 11.03 0.00 3.16
2740 3629 7.556275 ACCTATTACCAATCATTAACCTGTGTG 59.444 37.037 0.00 0.00 0.00 3.82
2741 3630 6.773976 ATTACCAATCATTAACCTGTGTGG 57.226 37.500 0.00 0.00 42.93 4.17
2742 3631 2.825532 ACCAATCATTAACCTGTGTGGC 59.174 45.455 0.00 0.00 40.22 5.01
2743 3632 2.824936 CCAATCATTAACCTGTGTGGCA 59.175 45.455 0.00 0.00 40.22 4.92
2744 3633 3.448301 CCAATCATTAACCTGTGTGGCAT 59.552 43.478 0.00 0.00 40.22 4.40
2745 3634 4.081531 CCAATCATTAACCTGTGTGGCATT 60.082 41.667 0.00 0.00 40.22 3.56
2746 3635 5.126869 CCAATCATTAACCTGTGTGGCATTA 59.873 40.000 0.00 0.00 40.22 1.90
2747 3636 6.267817 CAATCATTAACCTGTGTGGCATTAG 58.732 40.000 0.00 0.00 40.22 1.73
2755 3648 3.191371 CCTGTGTGGCATTAGTCTTTTCC 59.809 47.826 0.00 0.00 0.00 3.13
2765 3658 6.491403 GGCATTAGTCTTTTCCATCATGGTAT 59.509 38.462 2.79 0.00 39.03 2.73
2767 3660 8.725148 GCATTAGTCTTTTCCATCATGGTATAG 58.275 37.037 2.79 0.00 39.03 1.31
3130 4023 4.156008 GCTTCATTCCCACGATGTTTTAGT 59.844 41.667 0.00 0.00 0.00 2.24
3255 4148 1.396648 CAATACTCACCGCGCAAATCA 59.603 47.619 8.75 0.00 0.00 2.57
3273 4166 6.815142 GCAAATCAGCTTCACCAATTCTTTAT 59.185 34.615 0.00 0.00 0.00 1.40
3285 4178 7.037438 CACCAATTCTTTATCATTCCACCAAG 58.963 38.462 0.00 0.00 0.00 3.61
3326 4219 1.985473 AGCCAGACACATTTCTGCAA 58.015 45.000 0.00 0.00 41.61 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 6.546395 ACATTGCTCGAGATACAAAAATGAC 58.454 36.000 18.75 0.00 0.00 3.06
106 123 2.034999 TCCCCCGTTGCACATTCC 59.965 61.111 0.00 0.00 0.00 3.01
130 166 1.295423 GTGTATCTGGTGCACCGGT 59.705 57.895 37.57 27.76 43.01 5.28
159 195 0.325203 GAGAGAAGGAGGGGCTCAGT 60.325 60.000 0.00 0.00 31.08 3.41
160 196 1.048160 GGAGAGAAGGAGGGGCTCAG 61.048 65.000 0.00 0.00 31.08 3.35
161 197 1.002274 GGAGAGAAGGAGGGGCTCA 59.998 63.158 0.00 0.00 31.08 4.26
200 238 7.031975 GGATCAACTGATTTTGAATGAAGGAC 58.968 38.462 0.00 0.00 38.95 3.85
218 256 7.360607 CCAGCTGAATTTCAAATTTGGATCAAC 60.361 37.037 17.39 6.82 0.00 3.18
223 261 4.040706 AGCCAGCTGAATTTCAAATTTGGA 59.959 37.500 17.39 6.72 0.00 3.53
313 351 3.516700 TCTTCATGTCAGGCTCATTGAGA 59.483 43.478 17.87 0.00 0.00 3.27
357 401 4.756135 AGTAATCGTTTTCCCGTTTAAGCA 59.244 37.500 0.00 0.00 0.00 3.91
382 426 1.203075 ACCGGCCACCTGGAAAATTTA 60.203 47.619 0.00 0.00 37.39 1.40
486 531 9.162764 TGAAGGTAGCAATTTCTAATCTTGTAC 57.837 33.333 6.68 0.00 0.00 2.90
487 532 9.733556 TTGAAGGTAGCAATTTCTAATCTTGTA 57.266 29.630 6.68 0.00 0.00 2.41
603 775 4.217112 GTCACCCAGACAGACCCT 57.783 61.111 0.00 0.00 46.77 4.34
614 786 6.879400 AGTCATCTGAGTAATTAAGTCACCC 58.121 40.000 0.00 0.00 33.81 4.61
646 818 7.362056 GGTGTGTCAATGCTATCACTTTTATGT 60.362 37.037 0.00 0.00 0.00 2.29
671 844 7.438160 TCACTTAGATGTGCGATAATTACTTGG 59.562 37.037 0.00 0.00 37.81 3.61
721 900 9.548208 CTGAGTATTTTTCTCTTCGATTTTTCC 57.452 33.333 0.00 0.00 33.59 3.13
733 912 9.535878 ACGGAGATTTATCTGAGTATTTTTCTC 57.464 33.333 0.00 0.00 37.25 2.87
759 938 6.944557 CACGTCTGTGTCATTAATCTTACA 57.055 37.500 0.00 0.00 41.34 2.41
822 1319 5.999600 TCATGATTCATGAACTGTTGAGTGT 59.000 36.000 23.72 0.00 46.17 3.55
841 1338 9.634021 GGATATGATATGGAGTACTAGTCATGA 57.366 37.037 0.00 0.00 0.00 3.07
884 1465 2.038557 CGGTAGATGGTTAATGGGGAGG 59.961 54.545 0.00 0.00 0.00 4.30
952 1544 4.353437 GCTTTGCTGCCGCTGCTT 62.353 61.111 21.13 0.00 38.71 3.91
959 1551 3.230522 CTGGGGTTGCTTTGCTGCC 62.231 63.158 0.00 0.00 0.00 4.85
1089 1717 2.124901 CTAAACCCATCGCCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
1308 1939 1.447838 CGGCGTGCCTATGTTCACT 60.448 57.895 9.55 0.00 0.00 3.41
1386 2017 3.214845 GGACCGTCGCCTCCGTAT 61.215 66.667 0.00 0.00 35.54 3.06
1527 2191 2.892425 GCGTCGCAGGAATGGGAG 60.892 66.667 13.44 0.00 0.00 4.30
1590 2291 3.453679 GAGAGGAGGCCGCTCGTT 61.454 66.667 6.40 0.00 40.30 3.85
1683 2384 3.959991 GAAGGTCGTGGAGCAGCCC 62.960 68.421 0.00 0.00 34.97 5.19
1836 2537 3.479269 CCGAAGTTGAGCGCGGAC 61.479 66.667 8.83 1.78 46.29 4.79
1910 2611 4.291783 GACGATGTAGTATGCCTTCACTC 58.708 47.826 0.00 0.00 0.00 3.51
2065 2768 2.366167 AGGGAGCTTGATCCGCCT 60.366 61.111 0.00 0.00 40.56 5.52
2271 2989 3.390967 TGATGGACACAGGAGAAAACTGA 59.609 43.478 0.00 0.00 39.24 3.41
2298 3016 1.207593 GTTCTGCTGCGCGATGTTT 59.792 52.632 12.10 0.00 0.00 2.83
2432 3157 1.228124 CACCCAGCGGAACCTCAAA 60.228 57.895 0.00 0.00 0.00 2.69
2459 3184 4.153411 AGTACTCGATTAAGGATCTGGGG 58.847 47.826 0.00 0.00 32.30 4.96
2488 3215 5.376625 GAGTTATCCATTATTCTGCCCACA 58.623 41.667 0.00 0.00 0.00 4.17
2504 3231 5.232463 TGGGTTACAAGTTCACGAGTTATC 58.768 41.667 0.00 0.00 0.00 1.75
2518 3258 6.040955 TGCAGTGTATTTCATTTGGGTTACAA 59.959 34.615 0.00 0.00 37.28 2.41
2599 3347 4.585879 TGTCTGTAGATTTTTGTAGGGCC 58.414 43.478 0.00 0.00 0.00 5.80
2655 3537 8.970813 AGGAGGGGATTATATTGGAAGTTTAAT 58.029 33.333 0.00 0.00 0.00 1.40
2660 3545 6.044871 CAGAAGGAGGGGATTATATTGGAAGT 59.955 42.308 0.00 0.00 0.00 3.01
2661 3546 6.273260 TCAGAAGGAGGGGATTATATTGGAAG 59.727 42.308 0.00 0.00 0.00 3.46
2668 3553 7.705912 TTGAATTCAGAAGGAGGGGATTATA 57.294 36.000 8.41 0.00 0.00 0.98
2669 3554 6.596869 TTGAATTCAGAAGGAGGGGATTAT 57.403 37.500 8.41 0.00 0.00 1.28
2681 3570 3.511146 GCTCACCCCAATTGAATTCAGAA 59.489 43.478 7.12 0.00 0.00 3.02
2682 3571 3.091545 GCTCACCCCAATTGAATTCAGA 58.908 45.455 7.12 0.72 0.00 3.27
2740 3629 4.646492 ACCATGATGGAAAAGACTAATGCC 59.354 41.667 20.11 0.00 40.96 4.40
2741 3630 5.841957 ACCATGATGGAAAAGACTAATGC 57.158 39.130 20.11 0.00 40.96 3.56
2742 3631 9.784531 ACTATACCATGATGGAAAAGACTAATG 57.215 33.333 20.11 0.00 40.96 1.90
2745 3634 8.573885 CGTACTATACCATGATGGAAAAGACTA 58.426 37.037 20.11 0.00 40.96 2.59
2746 3635 7.434492 CGTACTATACCATGATGGAAAAGACT 58.566 38.462 20.11 0.00 40.96 3.24
2747 3636 6.645415 CCGTACTATACCATGATGGAAAAGAC 59.355 42.308 20.11 7.65 40.96 3.01
2755 3648 4.627058 TGCAACCGTACTATACCATGATG 58.373 43.478 0.00 0.00 0.00 3.07
2827 3720 4.558080 GCACGAGCACTCTACTAGTAAAAC 59.442 45.833 3.76 0.00 41.58 2.43
3163 4056 2.229792 GTGTTGTTTCTGCAGGATGGA 58.770 47.619 15.13 0.00 35.86 3.41
3255 4148 6.664816 TGGAATGATAAAGAATTGGTGAAGCT 59.335 34.615 0.00 0.00 0.00 3.74
3273 4166 7.487822 TTTATTTTATGCCTTGGTGGAATGA 57.512 32.000 0.00 0.00 34.14 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.