AutoCloner

Multiple sequence alignment - TraesCS3B01G140500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3B01G140500	chr3B	100.000	3416	0	0	1	3416	126665584	126662169	0.000000e+00	6309.0
1	TraesCS3B01G140500	chr3B	87.487	1878	151	29	810	2639	126733782	126731941	0.000000e+00	2089.0
2	TraesCS3B01G140500	chr3B	82.300	1565	211	28	857	2376	126400940	126399397	0.000000e+00	1295.0
3	TraesCS3B01G140500	chr3B	82.849	1411	194	17	996	2376	126459015	126457623	0.000000e+00	1221.0
4	TraesCS3B01G140500	chr3B	95.377	584	25	2	2833	3416	21504448	21503867	0.000000e+00	928.0
5	TraesCS3B01G140500	chr3B	93.846	585	32	2	2832	3416	796845040	796845620	0.000000e+00	878.0
6	TraesCS3B01G140500	chr3B	89.725	545	38	5	860	1389	126715202	126714661	0.000000e+00	680.0
7	TraesCS3B01G140500	chr3B	86.141	368	26	7	810	1165	126755520	126755166	1.160000e-99	374.0
8	TraesCS3B01G140500	chr3B	91.089	101	9	0	504	604	126755632	126755532	1.650000e-28	137.0
9	TraesCS3B01G140500	chr3B	91.429	70	5	1	9	77	92740653	92740584	1.010000e-15	95.3
10	TraesCS3B01G140500	chr3A	94.621	1766	69	9	853	2593	95127530	95125766	0.000000e+00	2712.0
11	TraesCS3B01G140500	chr3A	88.172	2029	174	30	853	2834	95359835	95357826	0.000000e+00	2357.0
12	TraesCS3B01G140500	chr3A	91.171	1563	95	18	903	2432	95134590	95133038	0.000000e+00	2082.0
13	TraesCS3B01G140500	chr3A	82.532	1185	164	16	1222	2376	94384152	94382981	0.000000e+00	1002.0
14	TraesCS3B01G140500	chr3A	82.450	547	51	19	4	508	95128525	95127982	1.460000e-118	436.0
15	TraesCS3B01G140500	chr3A	79.368	601	55	28	37	589	95135856	95135277	3.240000e-95	359.0
16	TraesCS3B01G140500	chr3A	90.535	243	20	2	266	507	95360230	95359990	5.500000e-83	318.0
17	TraesCS3B01G140500	chr3A	87.279	283	28	5	500	775	95127951	95127670	1.980000e-82	316.0
18	TraesCS3B01G140500	chr3A	98.718	78	1	0	2759	2836	95118368	95118291	4.600000e-29	139.0
19	TraesCS3B01G140500	chr3D	88.772	1799	146	24	853	2617	81122337	81120561	0.000000e+00	2152.0
20	TraesCS3B01G140500	chr3D	96.228	1087	41	0	1542	2628	81057149	81056063	0.000000e+00	1781.0
21	TraesCS3B01G140500	chr3D	89.252	1070	73	16	500	1544	81058233	81057181	0.000000e+00	1301.0
22	TraesCS3B01G140500	chr3D	82.863	1418	187	21	996	2376	80630474	80629076	0.000000e+00	1221.0
23	TraesCS3B01G140500	chr3D	88.462	494	32	13	37	507	81058755	81058264	1.060000e-159	573.0
24	TraesCS3B01G140500	chr3D	81.463	588	90	10	857	1436	80917639	80917063	6.680000e-127	464.0
25	TraesCS3B01G140500	chr3D	90.535	243	20	3	266	505	81122736	81122494	5.500000e-83	318.0
26	TraesCS3B01G140500	chr3D	95.588	68	3	0	2769	2836	81056065	81055998	3.600000e-20	110.0
27	TraesCS3B01G140500	chr3D	90.476	63	5	1	2775	2836	81120301	81120239	7.860000e-12	82.4
28	TraesCS3B01G140500	chr5B	94.521	584	30	2	2833	3416	322442925	322442344	0.000000e+00	900.0
29	TraesCS3B01G140500	chr5B	84.138	145	15	7	4	142	639158452	639158310	2.140000e-27	134.0
30	TraesCS3B01G140500	chr5B	90.769	65	5	1	4	68	62980374	62980311	6.070000e-13	86.1
31	TraesCS3B01G140500	chr5B	93.478	46	2	1	163	207	546565853	546565808	2.200000e-07	67.6
32	TraesCS3B01G140500	chr2B	94.521	584	31	1	2833	3416	662828633	662829215	0.000000e+00	900.0
33	TraesCS3B01G140500	chr4B	94.218	588	33	1	2829	3416	557457609	557458195	0.000000e+00	896.0
34	TraesCS3B01G140500	chr4B	84.211	114	15	3	153	264	11569417	11569305	1.300000e-19	108.0
35	TraesCS3B01G140500	chr4B	92.754	69	5	0	9	77	74329459	74329527	2.170000e-17	100.0
36	TraesCS3B01G140500	chr1B	94.007	584	34	1	2833	3416	152017131	152016549	0.000000e+00	883.0
37	TraesCS3B01G140500	chr6B	93.445	595	37	2	2823	3416	81983043	81983636	0.000000e+00	881.0
38	TraesCS3B01G140500	chr4A	93.654	583	35	1	2833	3415	101396255	101396835	0.000000e+00	870.0
39	TraesCS3B01G140500	chr7B	93.493	584	37	1	2833	3416	589047111	589046529	0.000000e+00	867.0
40	TraesCS3B01G140500	chr7A	89.362	141	13	2	4	142	664500486	664500346	3.500000e-40	176.0
41	TraesCS3B01G140500	chr7A	77.477	111	22	3	154	261	712807749	712807859	2.850000e-06	63.9
42	TraesCS3B01G140500	chr5A	85.430	151	8	9	4	142	445064392	445064540	9.880000e-31	145.0
43	TraesCS3B01G140500	chr5A	95.385	65	3	0	4	68	552364678	552364742	1.680000e-18	104.0
44	TraesCS3B01G140500	chr5D	84.000	150	12	4	5	142	346182932	346182783	2.140000e-27	134.0
45	TraesCS3B01G140500	chr2D	80.870	115	16	4	7	115	18245195	18245309	6.070000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3B01G140500	chr3B	126662169	126665584	3415	True	6309.000000	6309	100.000000	1	3416	1	chr3B.!!$R5	3415
1	TraesCS3B01G140500	chr3B	126731941	126733782	1841	True	2089.000000	2089	87.487000	810	2639	1	chr3B.!!$R7	1829
2	TraesCS3B01G140500	chr3B	126399397	126400940	1543	True	1295.000000	1295	82.300000	857	2376	1	chr3B.!!$R3	1519
3	TraesCS3B01G140500	chr3B	126457623	126459015	1392	True	1221.000000	1221	82.849000	996	2376	1	chr3B.!!$R4	1380
4	TraesCS3B01G140500	chr3B	21503867	21504448	581	True	928.000000	928	95.377000	2833	3416	1	chr3B.!!$R1	583
5	TraesCS3B01G140500	chr3B	796845040	796845620	580	False	878.000000	878	93.846000	2832	3416	1	chr3B.!!$F1	584
6	TraesCS3B01G140500	chr3B	126714661	126715202	541	True	680.000000	680	89.725000	860	1389	1	chr3B.!!$R6	529
7	TraesCS3B01G140500	chr3A	95357826	95360230	2404	True	1337.500000	2357	89.353500	266	2834	2	chr3A.!!$R5	2568
8	TraesCS3B01G140500	chr3A	95133038	95135856	2818	True	1220.500000	2082	85.269500	37	2432	2	chr3A.!!$R4	2395
9	TraesCS3B01G140500	chr3A	95125766	95128525	2759	True	1154.666667	2712	88.116667	4	2593	3	chr3A.!!$R3	2589
10	TraesCS3B01G140500	chr3A	94382981	94384152	1171	True	1002.000000	1002	82.532000	1222	2376	1	chr3A.!!$R1	1154
11	TraesCS3B01G140500	chr3D	80629076	80630474	1398	True	1221.000000	1221	82.863000	996	2376	1	chr3D.!!$R1	1380
12	TraesCS3B01G140500	chr3D	81055998	81058755	2757	True	941.250000	1781	92.382500	37	2836	4	chr3D.!!$R3	2799
13	TraesCS3B01G140500	chr3D	81120239	81122736	2497	True	850.800000	2152	89.927667	266	2836	3	chr3D.!!$R4	2570
14	TraesCS3B01G140500	chr3D	80917063	80917639	576	True	464.000000	464	81.463000	857	1436	1	chr3D.!!$R2	579
15	TraesCS3B01G140500	chr5B	322442344	322442925	581	True	900.000000	900	94.521000	2833	3416	1	chr5B.!!$R2	583
16	TraesCS3B01G140500	chr2B	662828633	662829215	582	False	900.000000	900	94.521000	2833	3416	1	chr2B.!!$F1	583
17	TraesCS3B01G140500	chr4B	557457609	557458195	586	False	896.000000	896	94.218000	2829	3416	1	chr4B.!!$F2	587
18	TraesCS3B01G140500	chr1B	152016549	152017131	582	True	883.000000	883	94.007000	2833	3416	1	chr1B.!!$R1	583
19	TraesCS3B01G140500	chr6B	81983043	81983636	593	False	881.000000	881	93.445000	2823	3416	1	chr6B.!!$F1	593
20	TraesCS3B01G140500	chr4A	101396255	101396835	580	False	870.000000	870	93.654000	2833	3415	1	chr4A.!!$F1	582
21	TraesCS3B01G140500	chr7B	589046529	589047111	582	True	867.000000	867	93.493000	2833	3416	1	chr7B.!!$R1	583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
822	1319	1.083806	CGCGGTGAGCTGCTAAATGA	61.084	55.0	0.15	0.0	44.55	2.57	F
1308	1939	0.108186	CAAGCGAGTACCTGATGGCA	60.108	55.0	0.00	0.0	36.63	4.92	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2298	3016	1.207593	GTTCTGCTGCGCGATGTTT	59.792	52.632	12.1	0.0	0.0	2.83	R
2432	3157	1.228124	CACCCAGCGGAACCTCAAA	60.228	57.895	0.0	0.0	0.0	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
79	96	9.734620	ACATACATTGATGTTATGTTAATGCAC	57.265	29.630	1.46	0.00	41.97	4.57
159	195	1.119684	CAGATACACCCCCGATGACA	58.880	55.000	0.00	0.00	0.00	3.58
160	196	1.120530	AGATACACCCCCGATGACAC	58.879	55.000	0.00	0.00	0.00	3.67
161	197	1.120530	GATACACCCCCGATGACACT	58.879	55.000	0.00	0.00	0.00	3.55
218	256	6.486253	TCTTCGTCCTTCATTCAAAATCAG	57.514	37.500	0.00	0.00	0.00	2.90
223	261	6.430925	TCGTCCTTCATTCAAAATCAGTTGAT	59.569	34.615	0.00	0.00	37.36	2.57
264	302	4.513442	TGGCTAACATGTAGCTAAAGTGG	58.487	43.478	19.76	0.00	40.25	4.00
313	351	4.559153	CAGAAAAGTGCGGAATGGAATTT	58.441	39.130	0.00	0.00	37.84	1.82
357	401	3.056749	AGCGAGACGTAGAACAAAAGGAT	60.057	43.478	0.00	0.00	0.00	3.24
370	414	3.892588	ACAAAAGGATGCTTAAACGGGAA	59.107	39.130	0.00	0.00	0.00	3.97
382	426	6.594937	TGCTTAAACGGGAAAACGATTACTAT	59.405	34.615	0.00	0.00	32.16	2.12
486	531	9.213799	GATAATCCTCCTTCTACAAATTAGCTG	57.786	37.037	0.00	0.00	0.00	4.24
487	532	6.567602	ATCCTCCTTCTACAAATTAGCTGT	57.432	37.500	0.00	0.00	0.00	4.40
671	844	7.530010	ACATAAAAGTGATAGCATTGACACAC	58.470	34.615	0.00	0.00	35.97	3.82
730	909	9.797473	GAAGCATAAAAAGAAAAGGAAAAATCG	57.203	29.630	0.00	0.00	0.00	3.34
733	912	9.797473	GCATAAAAAGAAAAGGAAAAATCGAAG	57.203	29.630	0.00	0.00	0.00	3.79
759	938	9.535878	GAGAAAAATACTCAGATAAATCTCCGT	57.464	33.333	0.00	0.00	34.22	4.69
775	954	7.772332	AATCTCCGTGTAAGATTAATGACAC	57.228	36.000	12.02	12.02	40.74	3.67
779	967	6.097356	TCCGTGTAAGATTAATGACACAGAC	58.903	40.000	18.13	0.54	41.83	3.51
822	1319	1.083806	CGCGGTGAGCTGCTAAATGA	61.084	55.000	0.15	0.00	44.55	2.57
841	1338	6.889301	AATGACACTCAACAGTTCATGAAT	57.111	33.333	12.12	0.00	33.89	2.57
884	1465	1.445582	CCCGACTTACCACACTCGC	60.446	63.158	0.00	0.00	0.00	5.03
945	1537	2.490903	TCGCCTATAAATACCGCTCTCC	59.509	50.000	0.00	0.00	0.00	3.71
952	1544	1.617322	AATACCGCTCTCCGCATAGA	58.383	50.000	0.00	0.00	39.08	1.98
1308	1939	0.108186	CAAGCGAGTACCTGATGGCA	60.108	55.000	0.00	0.00	36.63	4.92
1386	2017	0.401356	TCACCTGGCTCAATTGCAGA	59.599	50.000	11.74	0.00	34.04	4.26
1683	2384	0.594796	GCGTGGCCAAAGTCAACTTG	60.595	55.000	7.24	0.00	36.12	3.16
1712	2413	2.202453	GACCTTCGTCGGCTCGTC	60.202	66.667	0.00	0.00	0.00	4.20
1836	2537	1.433879	CTACTCCGTCAAGGCCTCG	59.566	63.158	5.23	5.32	40.77	4.63
1910	2611	2.281345	GCCGCTGATCCCATCCAG	60.281	66.667	0.00	0.00	0.00	3.86
2065	2768	0.764369	ACTGGTGAAGGAGCTGACCA	60.764	55.000	0.00	0.00	36.98	4.02
2125	2828	2.281970	CCCTGCTGCTGTGCTTCA	60.282	61.111	0.00	0.00	0.00	3.02
2271	2989	0.541392	TATGCTTGGCGGTGTCTGAT	59.459	50.000	0.00	0.00	0.00	2.90
2298	3016	1.114627	CTCCTGTGTCCATCATCGGA	58.885	55.000	0.00	0.00	0.00	4.55
2398	3116	4.900259	CCTACCCCGCCCCCTCAT	62.900	72.222	0.00	0.00	0.00	2.90
2504	3231	5.603170	AAGATTTGTGGGCAGAATAATGG	57.397	39.130	0.00	0.00	0.00	3.16
2518	3258	6.480320	GCAGAATAATGGATAACTCGTGAACT	59.520	38.462	0.00	0.00	0.00	3.01
2618	3366	5.192927	TGATGGCCCTACAAAAATCTACAG	58.807	41.667	0.00	0.00	0.00	2.74
2626	3374	8.736244	GCCCTACAAAAATCTACAGACATTTTA	58.264	33.333	4.97	0.00	32.22	1.52
2681	3570	6.865651	AAACTTCCAATATAATCCCCTCCT	57.134	37.500	0.00	0.00	0.00	3.69
2682	3571	6.865651	AACTTCCAATATAATCCCCTCCTT	57.134	37.500	0.00	0.00	0.00	3.36
2696	3585	3.703052	CCCCTCCTTCTGAATTCAATTGG	59.297	47.826	9.88	11.03	0.00	3.16
2740	3629	7.556275	ACCTATTACCAATCATTAACCTGTGTG	59.444	37.037	0.00	0.00	0.00	3.82
2741	3630	6.773976	ATTACCAATCATTAACCTGTGTGG	57.226	37.500	0.00	0.00	42.93	4.17
2742	3631	2.825532	ACCAATCATTAACCTGTGTGGC	59.174	45.455	0.00	0.00	40.22	5.01
2743	3632	2.824936	CCAATCATTAACCTGTGTGGCA	59.175	45.455	0.00	0.00	40.22	4.92
2744	3633	3.448301	CCAATCATTAACCTGTGTGGCAT	59.552	43.478	0.00	0.00	40.22	4.40
2745	3634	4.081531	CCAATCATTAACCTGTGTGGCATT	60.082	41.667	0.00	0.00	40.22	3.56
2746	3635	5.126869	CCAATCATTAACCTGTGTGGCATTA	59.873	40.000	0.00	0.00	40.22	1.90
2747	3636	6.267817	CAATCATTAACCTGTGTGGCATTAG	58.732	40.000	0.00	0.00	40.22	1.73
2755	3648	3.191371	CCTGTGTGGCATTAGTCTTTTCC	59.809	47.826	0.00	0.00	0.00	3.13
2765	3658	6.491403	GGCATTAGTCTTTTCCATCATGGTAT	59.509	38.462	2.79	0.00	39.03	2.73
2767	3660	8.725148	GCATTAGTCTTTTCCATCATGGTATAG	58.275	37.037	2.79	0.00	39.03	1.31
3130	4023	4.156008	GCTTCATTCCCACGATGTTTTAGT	59.844	41.667	0.00	0.00	0.00	2.24
3255	4148	1.396648	CAATACTCACCGCGCAAATCA	59.603	47.619	8.75	0.00	0.00	2.57
3273	4166	6.815142	GCAAATCAGCTTCACCAATTCTTTAT	59.185	34.615	0.00	0.00	0.00	1.40
3285	4178	7.037438	CACCAATTCTTTATCATTCCACCAAG	58.963	38.462	0.00	0.00	0.00	3.61
3326	4219	1.985473	AGCCAGACACATTTCTGCAA	58.015	45.000	0.00	0.00	41.61	4.08

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	6.546395	ACATTGCTCGAGATACAAAAATGAC	58.454	36.000	18.75	0.00	0.00	3.06
106	123	2.034999	TCCCCCGTTGCACATTCC	59.965	61.111	0.00	0.00	0.00	3.01
130	166	1.295423	GTGTATCTGGTGCACCGGT	59.705	57.895	37.57	27.76	43.01	5.28
159	195	0.325203	GAGAGAAGGAGGGGCTCAGT	60.325	60.000	0.00	0.00	31.08	3.41
160	196	1.048160	GGAGAGAAGGAGGGGCTCAG	61.048	65.000	0.00	0.00	31.08	3.35
161	197	1.002274	GGAGAGAAGGAGGGGCTCA	59.998	63.158	0.00	0.00	31.08	4.26
200	238	7.031975	GGATCAACTGATTTTGAATGAAGGAC	58.968	38.462	0.00	0.00	38.95	3.85
218	256	7.360607	CCAGCTGAATTTCAAATTTGGATCAAC	60.361	37.037	17.39	6.82	0.00	3.18
223	261	4.040706	AGCCAGCTGAATTTCAAATTTGGA	59.959	37.500	17.39	6.72	0.00	3.53
313	351	3.516700	TCTTCATGTCAGGCTCATTGAGA	59.483	43.478	17.87	0.00	0.00	3.27
357	401	4.756135	AGTAATCGTTTTCCCGTTTAAGCA	59.244	37.500	0.00	0.00	0.00	3.91
382	426	1.203075	ACCGGCCACCTGGAAAATTTA	60.203	47.619	0.00	0.00	37.39	1.40
486	531	9.162764	TGAAGGTAGCAATTTCTAATCTTGTAC	57.837	33.333	6.68	0.00	0.00	2.90
487	532	9.733556	TTGAAGGTAGCAATTTCTAATCTTGTA	57.266	29.630	6.68	0.00	0.00	2.41
603	775	4.217112	GTCACCCAGACAGACCCT	57.783	61.111	0.00	0.00	46.77	4.34
614	786	6.879400	AGTCATCTGAGTAATTAAGTCACCC	58.121	40.000	0.00	0.00	33.81	4.61
646	818	7.362056	GGTGTGTCAATGCTATCACTTTTATGT	60.362	37.037	0.00	0.00	0.00	2.29
671	844	7.438160	TCACTTAGATGTGCGATAATTACTTGG	59.562	37.037	0.00	0.00	37.81	3.61
721	900	9.548208	CTGAGTATTTTTCTCTTCGATTTTTCC	57.452	33.333	0.00	0.00	33.59	3.13
733	912	9.535878	ACGGAGATTTATCTGAGTATTTTTCTC	57.464	33.333	0.00	0.00	37.25	2.87
759	938	6.944557	CACGTCTGTGTCATTAATCTTACA	57.055	37.500	0.00	0.00	41.34	2.41
822	1319	5.999600	TCATGATTCATGAACTGTTGAGTGT	59.000	36.000	23.72	0.00	46.17	3.55
841	1338	9.634021	GGATATGATATGGAGTACTAGTCATGA	57.366	37.037	0.00	0.00	0.00	3.07
884	1465	2.038557	CGGTAGATGGTTAATGGGGAGG	59.961	54.545	0.00	0.00	0.00	4.30
952	1544	4.353437	GCTTTGCTGCCGCTGCTT	62.353	61.111	21.13	0.00	38.71	3.91
959	1551	3.230522	CTGGGGTTGCTTTGCTGCC	62.231	63.158	0.00	0.00	0.00	4.85
1089	1717	2.124901	CTAAACCCATCGCCGCCA	60.125	61.111	0.00	0.00	0.00	5.69
1308	1939	1.447838	CGGCGTGCCTATGTTCACT	60.448	57.895	9.55	0.00	0.00	3.41
1386	2017	3.214845	GGACCGTCGCCTCCGTAT	61.215	66.667	0.00	0.00	35.54	3.06
1527	2191	2.892425	GCGTCGCAGGAATGGGAG	60.892	66.667	13.44	0.00	0.00	4.30
1590	2291	3.453679	GAGAGGAGGCCGCTCGTT	61.454	66.667	6.40	0.00	40.30	3.85
1683	2384	3.959991	GAAGGTCGTGGAGCAGCCC	62.960	68.421	0.00	0.00	34.97	5.19
1836	2537	3.479269	CCGAAGTTGAGCGCGGAC	61.479	66.667	8.83	1.78	46.29	4.79
1910	2611	4.291783	GACGATGTAGTATGCCTTCACTC	58.708	47.826	0.00	0.00	0.00	3.51
2065	2768	2.366167	AGGGAGCTTGATCCGCCT	60.366	61.111	0.00	0.00	40.56	5.52
2271	2989	3.390967	TGATGGACACAGGAGAAAACTGA	59.609	43.478	0.00	0.00	39.24	3.41
2298	3016	1.207593	GTTCTGCTGCGCGATGTTT	59.792	52.632	12.10	0.00	0.00	2.83
2432	3157	1.228124	CACCCAGCGGAACCTCAAA	60.228	57.895	0.00	0.00	0.00	2.69
2459	3184	4.153411	AGTACTCGATTAAGGATCTGGGG	58.847	47.826	0.00	0.00	32.30	4.96
2488	3215	5.376625	GAGTTATCCATTATTCTGCCCACA	58.623	41.667	0.00	0.00	0.00	4.17
2504	3231	5.232463	TGGGTTACAAGTTCACGAGTTATC	58.768	41.667	0.00	0.00	0.00	1.75
2518	3258	6.040955	TGCAGTGTATTTCATTTGGGTTACAA	59.959	34.615	0.00	0.00	37.28	2.41
2599	3347	4.585879	TGTCTGTAGATTTTTGTAGGGCC	58.414	43.478	0.00	0.00	0.00	5.80
2655	3537	8.970813	AGGAGGGGATTATATTGGAAGTTTAAT	58.029	33.333	0.00	0.00	0.00	1.40
2660	3545	6.044871	CAGAAGGAGGGGATTATATTGGAAGT	59.955	42.308	0.00	0.00	0.00	3.01
2661	3546	6.273260	TCAGAAGGAGGGGATTATATTGGAAG	59.727	42.308	0.00	0.00	0.00	3.46
2668	3553	7.705912	TTGAATTCAGAAGGAGGGGATTATA	57.294	36.000	8.41	0.00	0.00	0.98
2669	3554	6.596869	TTGAATTCAGAAGGAGGGGATTAT	57.403	37.500	8.41	0.00	0.00	1.28
2681	3570	3.511146	GCTCACCCCAATTGAATTCAGAA	59.489	43.478	7.12	0.00	0.00	3.02
2682	3571	3.091545	GCTCACCCCAATTGAATTCAGA	58.908	45.455	7.12	0.72	0.00	3.27
2740	3629	4.646492	ACCATGATGGAAAAGACTAATGCC	59.354	41.667	20.11	0.00	40.96	4.40
2741	3630	5.841957	ACCATGATGGAAAAGACTAATGC	57.158	39.130	20.11	0.00	40.96	3.56
2742	3631	9.784531	ACTATACCATGATGGAAAAGACTAATG	57.215	33.333	20.11	0.00	40.96	1.90
2745	3634	8.573885	CGTACTATACCATGATGGAAAAGACTA	58.426	37.037	20.11	0.00	40.96	2.59
2746	3635	7.434492	CGTACTATACCATGATGGAAAAGACT	58.566	38.462	20.11	0.00	40.96	3.24
2747	3636	6.645415	CCGTACTATACCATGATGGAAAAGAC	59.355	42.308	20.11	7.65	40.96	3.01
2755	3648	4.627058	TGCAACCGTACTATACCATGATG	58.373	43.478	0.00	0.00	0.00	3.07
2827	3720	4.558080	GCACGAGCACTCTACTAGTAAAAC	59.442	45.833	3.76	0.00	41.58	2.43
3163	4056	2.229792	GTGTTGTTTCTGCAGGATGGA	58.770	47.619	15.13	0.00	35.86	3.41
3255	4148	6.664816	TGGAATGATAAAGAATTGGTGAAGCT	59.335	34.615	0.00	0.00	0.00	3.74
3273	4166	7.487822	TTTATTTTATGCCTTGGTGGAATGA	57.512	32.000	0.00	0.00	34.14	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.