Multiple sequence alignment - TraesCS3B01G140300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G140300 chr3B 100.000 2685 0 0 1 2685 126568771 126571455 0.000000e+00 4959.0
1 TraesCS3B01G140300 chr3B 86.945 383 43 4 2180 2562 550645997 550645622 8.890000e-115 424.0
2 TraesCS3B01G140300 chr3D 86.174 1801 144 48 380 2107 80940908 80942676 0.000000e+00 1849.0
3 TraesCS3B01G140300 chr3D 96.104 77 3 0 2106 2182 80942641 80942717 2.810000e-25 126.0
4 TraesCS3B01G140300 chr3A 89.317 908 61 20 874 1755 95015938 95016835 0.000000e+00 1107.0
5 TraesCS3B01G140300 chr3A 90.870 471 41 1 380 850 95015479 95015947 4.880000e-177 630.0
6 TraesCS3B01G140300 chr3A 83.772 228 21 6 1889 2107 95017603 95017823 4.530000e-48 202.0
7 TraesCS3B01G140300 chr3A 94.690 113 5 1 1759 1871 95016875 95016986 9.880000e-40 174.0
8 TraesCS3B01G140300 chr2D 93.478 506 31 1 2180 2685 442145995 442145492 0.000000e+00 750.0
9 TraesCS3B01G140300 chr2D 82.576 132 21 2 1888 2019 350567918 350568047 6.070000e-22 115.0
10 TraesCS3B01G140300 chr6D 92.702 507 34 2 2180 2685 147663982 147663478 0.000000e+00 728.0
11 TraesCS3B01G140300 chr6D 76.289 194 34 7 45 226 367387006 367386813 2.850000e-15 93.5
12 TraesCS3B01G140300 chr2A 92.095 506 38 2 2180 2685 394708315 394708818 0.000000e+00 712.0
13 TraesCS3B01G140300 chr2A 91.700 506 40 2 2180 2685 406496660 406496157 0.000000e+00 701.0
14 TraesCS3B01G140300 chr2A 90.119 506 34 5 2179 2684 500026648 500027137 0.000000e+00 643.0
15 TraesCS3B01G140300 chr2A 91.560 391 32 1 2295 2685 319035560 319035171 3.040000e-149 538.0
16 TraesCS3B01G140300 chr7A 86.729 535 64 5 1191 1719 239860374 239859841 2.980000e-164 588.0
17 TraesCS3B01G140300 chr7A 74.346 191 37 6 45 223 331512008 331512198 1.330000e-08 71.3
18 TraesCS3B01G140300 chr2B 96.949 295 9 0 2180 2474 165519494 165519788 1.860000e-136 496.0
19 TraesCS3B01G140300 chr2B 84.708 497 63 9 2181 2676 353569101 353569585 4.020000e-133 484.0
20 TraesCS3B01G140300 chr4D 91.781 219 18 0 2467 2685 317760196 317760414 3.360000e-79 305.0
21 TraesCS3B01G140300 chr1B 85.039 127 18 1 1893 2019 197778207 197778332 7.800000e-26 128.0
22 TraesCS3B01G140300 chr6B 84.252 127 19 1 1893 2019 701526116 701526241 3.630000e-24 122.0
23 TraesCS3B01G140300 chr1D 83.594 128 19 2 1893 2019 69787209 69787083 4.700000e-23 119.0
24 TraesCS3B01G140300 chr1D 77.665 197 32 7 41 226 3227012 3226817 2.830000e-20 110.0
25 TraesCS3B01G140300 chr5D 83.465 127 20 1 1893 2019 367595603 367595478 1.690000e-22 117.0
26 TraesCS3B01G140300 chr5D 100.000 28 0 0 44 71 469506742 469506715 5.000000e-03 52.8
27 TraesCS3B01G140300 chr4B 83.465 127 20 1 1893 2019 450022183 450022308 1.690000e-22 117.0
28 TraesCS3B01G140300 chr7D 82.576 132 21 2 1888 2019 586466226 586466097 6.070000e-22 115.0
29 TraesCS3B01G140300 chr7D 87.013 77 8 2 262 336 34482380 34482304 4.760000e-13 86.1
30 TraesCS3B01G140300 chr7D 91.228 57 4 1 171 227 42218785 42218840 2.870000e-10 76.8
31 TraesCS3B01G140300 chr4A 83.333 66 11 0 158 223 55386156 55386221 8.030000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G140300 chr3B 126568771 126571455 2684 False 4959.00 4959 100.00000 1 2685 1 chr3B.!!$F1 2684
1 TraesCS3B01G140300 chr3D 80940908 80942717 1809 False 987.50 1849 91.13900 380 2182 2 chr3D.!!$F1 1802
2 TraesCS3B01G140300 chr3A 95015479 95017823 2344 False 528.25 1107 89.66225 380 2107 4 chr3A.!!$F1 1727
3 TraesCS3B01G140300 chr2D 442145492 442145995 503 True 750.00 750 93.47800 2180 2685 1 chr2D.!!$R1 505
4 TraesCS3B01G140300 chr6D 147663478 147663982 504 True 728.00 728 92.70200 2180 2685 1 chr6D.!!$R1 505
5 TraesCS3B01G140300 chr2A 394708315 394708818 503 False 712.00 712 92.09500 2180 2685 1 chr2A.!!$F1 505
6 TraesCS3B01G140300 chr2A 406496157 406496660 503 True 701.00 701 91.70000 2180 2685 1 chr2A.!!$R2 505
7 TraesCS3B01G140300 chr7A 239859841 239860374 533 True 588.00 588 86.72900 1191 1719 1 chr7A.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 584 0.034337 GTCGGTGGCTCAAACCAGTA 59.966 55.0 0.0 0.0 41.46 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2889 0.253044 GCTCCTGCCCATGAACAGTA 59.747 55.0 12.25 0.0 31.76 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 8.611654 TTTTAACCAGACCAACTAAGACATAC 57.388 34.615 0.00 0.00 0.00 2.39
47 48 7.549147 TTAACCAGACCAACTAAGACATACT 57.451 36.000 0.00 0.00 0.00 2.12
48 49 5.662674 ACCAGACCAACTAAGACATACTC 57.337 43.478 0.00 0.00 0.00 2.59
49 50 4.466726 ACCAGACCAACTAAGACATACTCC 59.533 45.833 0.00 0.00 0.00 3.85
50 51 4.141914 CCAGACCAACTAAGACATACTCCC 60.142 50.000 0.00 0.00 0.00 4.30
51 52 4.712337 CAGACCAACTAAGACATACTCCCT 59.288 45.833 0.00 0.00 0.00 4.20
52 53 4.957327 AGACCAACTAAGACATACTCCCTC 59.043 45.833 0.00 0.00 0.00 4.30
53 54 4.031611 ACCAACTAAGACATACTCCCTCC 58.968 47.826 0.00 0.00 0.00 4.30
54 55 4.264895 ACCAACTAAGACATACTCCCTCCT 60.265 45.833 0.00 0.00 0.00 3.69
55 56 4.717280 CCAACTAAGACATACTCCCTCCTT 59.283 45.833 0.00 0.00 0.00 3.36
56 57 5.189934 CCAACTAAGACATACTCCCTCCTTT 59.810 44.000 0.00 0.00 0.00 3.11
57 58 6.342111 CAACTAAGACATACTCCCTCCTTTC 58.658 44.000 0.00 0.00 0.00 2.62
58 59 4.963628 ACTAAGACATACTCCCTCCTTTCC 59.036 45.833 0.00 0.00 0.00 3.13
59 60 3.491766 AGACATACTCCCTCCTTTCCA 57.508 47.619 0.00 0.00 0.00 3.53
60 61 4.014273 AGACATACTCCCTCCTTTCCAT 57.986 45.455 0.00 0.00 0.00 3.41
61 62 5.157770 AGACATACTCCCTCCTTTCCATA 57.842 43.478 0.00 0.00 0.00 2.74
62 63 5.538877 AGACATACTCCCTCCTTTCCATAA 58.461 41.667 0.00 0.00 0.00 1.90
63 64 6.153924 AGACATACTCCCTCCTTTCCATAAT 58.846 40.000 0.00 0.00 0.00 1.28
64 65 6.043706 AGACATACTCCCTCCTTTCCATAATG 59.956 42.308 0.00 0.00 0.00 1.90
65 66 5.672194 ACATACTCCCTCCTTTCCATAATGT 59.328 40.000 0.00 0.00 0.00 2.71
66 67 6.849697 ACATACTCCCTCCTTTCCATAATGTA 59.150 38.462 0.00 0.00 0.00 2.29
67 68 5.896073 ACTCCCTCCTTTCCATAATGTAG 57.104 43.478 0.00 0.00 0.00 2.74
68 69 5.289510 ACTCCCTCCTTTCCATAATGTAGT 58.710 41.667 0.00 0.00 0.00 2.73
69 70 5.131142 ACTCCCTCCTTTCCATAATGTAGTG 59.869 44.000 0.00 0.00 0.00 2.74
70 71 4.137543 CCCTCCTTTCCATAATGTAGTGC 58.862 47.826 0.00 0.00 0.00 4.40
71 72 4.385199 CCCTCCTTTCCATAATGTAGTGCA 60.385 45.833 0.00 0.00 0.00 4.57
72 73 4.576463 CCTCCTTTCCATAATGTAGTGCAC 59.424 45.833 9.40 9.40 0.00 4.57
73 74 4.523083 TCCTTTCCATAATGTAGTGCACC 58.477 43.478 14.63 0.00 0.00 5.01
74 75 3.632145 CCTTTCCATAATGTAGTGCACCC 59.368 47.826 14.63 5.07 0.00 4.61
75 76 2.613026 TCCATAATGTAGTGCACCCG 57.387 50.000 14.63 0.00 0.00 5.28
76 77 0.944386 CCATAATGTAGTGCACCCGC 59.056 55.000 14.63 4.51 39.24 6.13
77 78 0.581529 CATAATGTAGTGCACCCGCG 59.418 55.000 14.63 0.00 42.97 6.46
87 88 4.069232 CACCCGCGCTTCCTGAGA 62.069 66.667 5.56 0.00 0.00 3.27
88 89 3.764466 ACCCGCGCTTCCTGAGAG 61.764 66.667 5.56 0.00 0.00 3.20
93 94 2.970576 GCGCTTCCTGAGAGCTAAG 58.029 57.895 0.00 0.00 46.32 2.18
94 95 0.174617 GCGCTTCCTGAGAGCTAAGT 59.825 55.000 0.00 0.00 46.32 2.24
95 96 1.404851 GCGCTTCCTGAGAGCTAAGTT 60.405 52.381 0.00 0.00 46.32 2.66
96 97 2.933056 GCGCTTCCTGAGAGCTAAGTTT 60.933 50.000 0.00 0.00 46.32 2.66
97 98 2.670414 CGCTTCCTGAGAGCTAAGTTTG 59.330 50.000 0.00 0.00 37.99 2.93
98 99 3.615110 CGCTTCCTGAGAGCTAAGTTTGA 60.615 47.826 0.00 0.00 37.99 2.69
99 100 3.682377 GCTTCCTGAGAGCTAAGTTTGAC 59.318 47.826 0.00 0.00 37.18 3.18
100 101 3.963428 TCCTGAGAGCTAAGTTTGACC 57.037 47.619 0.00 0.00 0.00 4.02
101 102 2.231478 TCCTGAGAGCTAAGTTTGACCG 59.769 50.000 0.00 0.00 0.00 4.79
102 103 2.028930 CCTGAGAGCTAAGTTTGACCGT 60.029 50.000 0.00 0.00 0.00 4.83
103 104 3.192844 CCTGAGAGCTAAGTTTGACCGTA 59.807 47.826 0.00 0.00 0.00 4.02
104 105 4.321750 CCTGAGAGCTAAGTTTGACCGTAA 60.322 45.833 0.00 0.00 0.00 3.18
105 106 5.204409 TGAGAGCTAAGTTTGACCGTAAA 57.796 39.130 0.00 0.00 0.00 2.01
106 107 5.790593 TGAGAGCTAAGTTTGACCGTAAAT 58.209 37.500 0.00 0.00 0.00 1.40
107 108 6.228258 TGAGAGCTAAGTTTGACCGTAAATT 58.772 36.000 0.00 0.00 0.00 1.82
108 109 6.367969 TGAGAGCTAAGTTTGACCGTAAATTC 59.632 38.462 0.00 0.00 0.00 2.17
109 110 6.228258 AGAGCTAAGTTTGACCGTAAATTCA 58.772 36.000 0.00 0.00 0.00 2.57
110 111 6.708949 AGAGCTAAGTTTGACCGTAAATTCAA 59.291 34.615 0.00 0.00 0.00 2.69
111 112 6.665465 AGCTAAGTTTGACCGTAAATTCAAC 58.335 36.000 0.00 0.00 31.42 3.18
112 113 5.854866 GCTAAGTTTGACCGTAAATTCAACC 59.145 40.000 0.00 0.00 31.42 3.77
113 114 5.838531 AAGTTTGACCGTAAATTCAACCA 57.161 34.783 0.00 0.00 31.42 3.67
114 115 5.838531 AGTTTGACCGTAAATTCAACCAA 57.161 34.783 0.00 0.00 31.42 3.67
115 116 5.584442 AGTTTGACCGTAAATTCAACCAAC 58.416 37.500 0.00 0.00 31.42 3.77
116 117 3.881780 TGACCGTAAATTCAACCAACG 57.118 42.857 0.00 0.00 0.00 4.10
117 118 3.464907 TGACCGTAAATTCAACCAACGA 58.535 40.909 0.00 0.00 35.66 3.85
118 119 3.495377 TGACCGTAAATTCAACCAACGAG 59.505 43.478 0.00 0.00 35.66 4.18
119 120 3.731089 ACCGTAAATTCAACCAACGAGA 58.269 40.909 0.00 0.00 35.66 4.04
120 121 4.320870 ACCGTAAATTCAACCAACGAGAT 58.679 39.130 0.00 0.00 35.66 2.75
121 122 4.390909 ACCGTAAATTCAACCAACGAGATC 59.609 41.667 0.00 0.00 35.66 2.75
122 123 4.491924 CCGTAAATTCAACCAACGAGATCG 60.492 45.833 0.00 0.00 46.33 3.69
123 124 4.325204 CGTAAATTCAACCAACGAGATCGA 59.675 41.667 9.58 0.00 43.02 3.59
124 125 5.005394 CGTAAATTCAACCAACGAGATCGAT 59.995 40.000 9.58 0.00 43.02 3.59
125 126 4.864916 AATTCAACCAACGAGATCGATG 57.135 40.909 0.54 7.39 43.02 3.84
126 127 1.640428 TCAACCAACGAGATCGATGC 58.360 50.000 0.54 0.00 40.19 3.91
127 128 0.652592 CAACCAACGAGATCGATGCC 59.347 55.000 0.54 0.00 40.19 4.40
128 129 0.806102 AACCAACGAGATCGATGCCG 60.806 55.000 0.54 8.62 40.19 5.69
129 130 1.951130 CCAACGAGATCGATGCCGG 60.951 63.158 0.54 0.00 40.19 6.13
130 131 1.951130 CAACGAGATCGATGCCGGG 60.951 63.158 0.54 0.00 43.02 5.73
131 132 2.125326 AACGAGATCGATGCCGGGA 61.125 57.895 0.54 0.00 43.02 5.14
132 133 2.076622 AACGAGATCGATGCCGGGAG 62.077 60.000 0.54 0.00 43.02 4.30
133 134 2.048690 GAGATCGATGCCGGGAGC 60.049 66.667 0.54 0.00 44.14 4.70
144 145 2.492019 GCCGGGAGCAAAAATCATAC 57.508 50.000 2.18 0.00 42.97 2.39
145 146 1.067060 GCCGGGAGCAAAAATCATACC 59.933 52.381 2.18 0.00 42.97 2.73
146 147 2.374184 CCGGGAGCAAAAATCATACCA 58.626 47.619 0.00 0.00 0.00 3.25
147 148 2.099098 CCGGGAGCAAAAATCATACCAC 59.901 50.000 0.00 0.00 0.00 4.16
148 149 2.099098 CGGGAGCAAAAATCATACCACC 59.901 50.000 0.00 0.00 0.00 4.61
149 150 3.096092 GGGAGCAAAAATCATACCACCA 58.904 45.455 0.00 0.00 0.00 4.17
150 151 3.513515 GGGAGCAAAAATCATACCACCAA 59.486 43.478 0.00 0.00 0.00 3.67
151 152 4.020662 GGGAGCAAAAATCATACCACCAAA 60.021 41.667 0.00 0.00 0.00 3.28
152 153 5.338300 GGGAGCAAAAATCATACCACCAAAT 60.338 40.000 0.00 0.00 0.00 2.32
153 154 6.172630 GGAGCAAAAATCATACCACCAAATT 58.827 36.000 0.00 0.00 0.00 1.82
154 155 6.654582 GGAGCAAAAATCATACCACCAAATTT 59.345 34.615 0.00 0.00 0.00 1.82
155 156 7.361116 GGAGCAAAAATCATACCACCAAATTTG 60.361 37.037 11.40 11.40 0.00 2.32
169 170 4.988708 CAAATTTGGACAAATTCGGTGG 57.011 40.909 19.74 7.29 46.76 4.61
170 171 4.376146 CAAATTTGGACAAATTCGGTGGT 58.624 39.130 19.74 4.43 46.76 4.16
171 172 5.533482 CAAATTTGGACAAATTCGGTGGTA 58.467 37.500 19.74 0.00 46.76 3.25
172 173 5.993748 AATTTGGACAAATTCGGTGGTAT 57.006 34.783 15.25 0.00 44.98 2.73
173 174 7.316640 CAAATTTGGACAAATTCGGTGGTATA 58.683 34.615 19.74 0.00 46.76 1.47
174 175 7.469537 AATTTGGACAAATTCGGTGGTATAA 57.530 32.000 15.25 0.00 44.98 0.98
175 176 7.654022 ATTTGGACAAATTCGGTGGTATAAT 57.346 32.000 4.52 0.00 37.74 1.28
176 177 7.469537 TTTGGACAAATTCGGTGGTATAATT 57.530 32.000 0.00 0.00 0.00 1.40
177 178 7.469537 TTGGACAAATTCGGTGGTATAATTT 57.530 32.000 0.00 0.00 34.09 1.82
178 179 7.469537 TGGACAAATTCGGTGGTATAATTTT 57.530 32.000 0.00 0.00 32.05 1.82
179 180 7.897864 TGGACAAATTCGGTGGTATAATTTTT 58.102 30.769 0.00 0.00 32.05 1.94
180 181 7.815068 TGGACAAATTCGGTGGTATAATTTTTG 59.185 33.333 0.00 0.00 32.05 2.44
181 182 7.201487 GGACAAATTCGGTGGTATAATTTTTGC 60.201 37.037 0.00 0.00 32.05 3.68
182 183 7.382898 ACAAATTCGGTGGTATAATTTTTGCT 58.617 30.769 0.00 0.00 32.05 3.91
183 184 7.544217 ACAAATTCGGTGGTATAATTTTTGCTC 59.456 33.333 0.00 0.00 32.05 4.26
184 185 5.570234 TTCGGTGGTATAATTTTTGCTCC 57.430 39.130 0.00 0.00 0.00 4.70
185 186 4.590918 TCGGTGGTATAATTTTTGCTCCA 58.409 39.130 0.00 0.00 0.00 3.86
186 187 4.638421 TCGGTGGTATAATTTTTGCTCCAG 59.362 41.667 0.00 0.00 0.00 3.86
187 188 4.682787 GGTGGTATAATTTTTGCTCCAGC 58.317 43.478 0.00 0.00 42.50 4.85
188 189 4.441495 GGTGGTATAATTTTTGCTCCAGCC 60.441 45.833 0.00 0.00 41.18 4.85
189 190 3.380004 TGGTATAATTTTTGCTCCAGCCG 59.620 43.478 0.00 0.00 41.18 5.52
190 191 2.584492 ATAATTTTTGCTCCAGCCGC 57.416 45.000 0.00 0.00 41.18 6.53
191 192 1.252175 TAATTTTTGCTCCAGCCGCA 58.748 45.000 0.00 0.00 41.18 5.69
192 193 0.392336 AATTTTTGCTCCAGCCGCAA 59.608 45.000 0.00 0.00 44.83 4.85
193 194 0.609662 ATTTTTGCTCCAGCCGCAAT 59.390 45.000 0.00 0.00 45.67 3.56
194 195 0.038343 TTTTTGCTCCAGCCGCAATC 60.038 50.000 0.00 0.00 45.67 2.67
195 196 2.198906 TTTTGCTCCAGCCGCAATCG 62.199 55.000 0.00 0.00 45.67 3.34
205 206 4.162640 CGCAATCGGTCTCGTTGA 57.837 55.556 0.00 0.00 37.69 3.18
206 207 2.665777 CGCAATCGGTCTCGTTGAT 58.334 52.632 0.00 0.00 37.69 2.57
207 208 0.298707 CGCAATCGGTCTCGTTGATG 59.701 55.000 0.00 0.00 37.69 3.07
208 209 1.640428 GCAATCGGTCTCGTTGATGA 58.360 50.000 0.00 0.00 37.69 2.92
209 210 1.999735 GCAATCGGTCTCGTTGATGAA 59.000 47.619 0.00 0.00 37.69 2.57
210 211 2.415168 GCAATCGGTCTCGTTGATGAAA 59.585 45.455 0.00 0.00 37.69 2.69
211 212 3.063997 GCAATCGGTCTCGTTGATGAAAT 59.936 43.478 0.00 0.00 37.69 2.17
212 213 4.437390 GCAATCGGTCTCGTTGATGAAATT 60.437 41.667 0.00 0.00 37.69 1.82
213 214 5.631026 CAATCGGTCTCGTTGATGAAATTT 58.369 37.500 0.00 0.00 37.69 1.82
214 215 4.661993 TCGGTCTCGTTGATGAAATTTG 57.338 40.909 0.00 0.00 37.69 2.32
215 216 4.062293 TCGGTCTCGTTGATGAAATTTGT 58.938 39.130 0.00 0.00 37.69 2.83
216 217 4.084066 TCGGTCTCGTTGATGAAATTTGTG 60.084 41.667 0.00 0.00 37.69 3.33
217 218 4.475944 GGTCTCGTTGATGAAATTTGTGG 58.524 43.478 0.00 0.00 0.00 4.17
218 219 4.023193 GGTCTCGTTGATGAAATTTGTGGT 60.023 41.667 0.00 0.00 0.00 4.16
219 220 5.147162 GTCTCGTTGATGAAATTTGTGGTC 58.853 41.667 0.00 0.00 0.00 4.02
220 221 4.819088 TCTCGTTGATGAAATTTGTGGTCA 59.181 37.500 0.00 0.00 0.00 4.02
221 222 5.298026 TCTCGTTGATGAAATTTGTGGTCAA 59.702 36.000 0.00 0.00 0.00 3.18
222 223 5.895928 TCGTTGATGAAATTTGTGGTCAAA 58.104 33.333 0.00 0.00 45.71 2.69
223 224 5.746245 TCGTTGATGAAATTTGTGGTCAAAC 59.254 36.000 0.00 0.00 44.69 2.93
224 225 5.748152 CGTTGATGAAATTTGTGGTCAAACT 59.252 36.000 0.00 0.00 44.69 2.66
225 226 6.255453 CGTTGATGAAATTTGTGGTCAAACTT 59.745 34.615 0.00 0.00 44.69 2.66
226 227 7.201513 CGTTGATGAAATTTGTGGTCAAACTTT 60.202 33.333 0.00 0.00 44.69 2.66
227 228 8.450180 GTTGATGAAATTTGTGGTCAAACTTTT 58.550 29.630 0.00 0.00 44.69 2.27
228 229 8.558973 TGATGAAATTTGTGGTCAAACTTTTT 57.441 26.923 0.00 0.00 44.69 1.94
254 255 7.945033 TTTTCATCAAGTTTGGATTGCTTAC 57.055 32.000 0.00 0.00 0.00 2.34
255 256 6.647334 TTCATCAAGTTTGGATTGCTTACA 57.353 33.333 0.00 0.00 0.00 2.41
256 257 6.839124 TCATCAAGTTTGGATTGCTTACAT 57.161 33.333 0.00 0.00 0.00 2.29
257 258 6.623486 TCATCAAGTTTGGATTGCTTACATG 58.377 36.000 0.00 0.00 0.00 3.21
258 259 6.433716 TCATCAAGTTTGGATTGCTTACATGA 59.566 34.615 0.00 0.00 0.00 3.07
259 260 6.012658 TCAAGTTTGGATTGCTTACATGAC 57.987 37.500 0.00 0.00 0.00 3.06
260 261 5.769662 TCAAGTTTGGATTGCTTACATGACT 59.230 36.000 0.00 0.00 0.00 3.41
261 262 5.633830 AGTTTGGATTGCTTACATGACTG 57.366 39.130 0.00 0.00 0.00 3.51
262 263 5.072741 AGTTTGGATTGCTTACATGACTGT 58.927 37.500 0.00 0.00 39.49 3.55
263 264 5.182001 AGTTTGGATTGCTTACATGACTGTC 59.818 40.000 0.00 0.00 36.79 3.51
264 265 4.284829 TGGATTGCTTACATGACTGTCA 57.715 40.909 13.60 13.60 36.79 3.58
265 266 4.002982 TGGATTGCTTACATGACTGTCAC 58.997 43.478 13.50 0.00 36.79 3.67
266 267 3.062639 GGATTGCTTACATGACTGTCACG 59.937 47.826 13.50 7.59 36.79 4.35
267 268 2.812358 TGCTTACATGACTGTCACGT 57.188 45.000 14.30 14.30 36.79 4.49
268 269 2.403259 TGCTTACATGACTGTCACGTG 58.597 47.619 18.70 9.94 36.79 4.49
269 270 1.726791 GCTTACATGACTGTCACGTGG 59.273 52.381 18.70 12.20 36.79 4.94
270 271 2.866460 GCTTACATGACTGTCACGTGGT 60.866 50.000 18.70 13.68 36.79 4.16
271 272 3.613193 GCTTACATGACTGTCACGTGGTA 60.613 47.826 18.70 12.81 36.79 3.25
272 273 4.552355 CTTACATGACTGTCACGTGGTAA 58.448 43.478 18.70 17.96 36.79 2.85
273 274 3.462483 ACATGACTGTCACGTGGTAAA 57.538 42.857 17.00 0.00 0.00 2.01
274 275 4.002906 ACATGACTGTCACGTGGTAAAT 57.997 40.909 17.00 0.95 0.00 1.40
275 276 4.385825 ACATGACTGTCACGTGGTAAATT 58.614 39.130 17.00 0.00 0.00 1.82
276 277 4.819630 ACATGACTGTCACGTGGTAAATTT 59.180 37.500 17.00 0.00 0.00 1.82
277 278 4.804608 TGACTGTCACGTGGTAAATTTG 57.195 40.909 17.00 0.69 0.00 2.32
278 279 4.193090 TGACTGTCACGTGGTAAATTTGT 58.807 39.130 17.00 3.87 0.00 2.83
279 280 4.034626 TGACTGTCACGTGGTAAATTTGTG 59.965 41.667 17.00 0.01 0.00 3.33
280 281 3.314080 ACTGTCACGTGGTAAATTTGTGG 59.686 43.478 17.00 0.00 0.00 4.17
281 282 3.280295 TGTCACGTGGTAAATTTGTGGT 58.720 40.909 17.00 0.00 0.00 4.16
282 283 3.312973 TGTCACGTGGTAAATTTGTGGTC 59.687 43.478 17.00 0.00 0.00 4.02
283 284 3.312973 GTCACGTGGTAAATTTGTGGTCA 59.687 43.478 17.00 0.00 0.00 4.02
284 285 3.945921 TCACGTGGTAAATTTGTGGTCAA 59.054 39.130 17.00 0.00 0.00 3.18
285 286 4.398358 TCACGTGGTAAATTTGTGGTCAAA 59.602 37.500 17.00 0.00 45.71 2.69
286 287 4.501198 CACGTGGTAAATTTGTGGTCAAAC 59.499 41.667 7.95 0.00 44.69 2.93
287 288 4.399934 ACGTGGTAAATTTGTGGTCAAACT 59.600 37.500 0.00 0.00 44.69 2.66
288 289 5.105675 ACGTGGTAAATTTGTGGTCAAACTT 60.106 36.000 0.00 0.00 44.69 2.66
289 290 6.095160 ACGTGGTAAATTTGTGGTCAAACTTA 59.905 34.615 0.00 0.00 44.69 2.24
290 291 6.635239 CGTGGTAAATTTGTGGTCAAACTTAG 59.365 38.462 0.00 0.00 44.69 2.18
291 292 7.467539 CGTGGTAAATTTGTGGTCAAACTTAGA 60.468 37.037 0.00 0.00 44.69 2.10
292 293 8.357402 GTGGTAAATTTGTGGTCAAACTTAGAT 58.643 33.333 0.00 0.00 44.69 1.98
293 294 8.573035 TGGTAAATTTGTGGTCAAACTTAGATC 58.427 33.333 0.00 0.00 44.69 2.75
294 295 8.793592 GGTAAATTTGTGGTCAAACTTAGATCT 58.206 33.333 0.00 0.00 44.69 2.75
295 296 9.827411 GTAAATTTGTGGTCAAACTTAGATCTC 57.173 33.333 0.00 0.00 44.69 2.75
296 297 8.463930 AAATTTGTGGTCAAACTTAGATCTCA 57.536 30.769 0.00 0.00 44.69 3.27
297 298 8.463930 AATTTGTGGTCAAACTTAGATCTCAA 57.536 30.769 0.00 0.00 44.69 3.02
298 299 7.873719 TTTGTGGTCAAACTTAGATCTCAAA 57.126 32.000 0.00 0.00 37.30 2.69
299 300 7.873719 TTGTGGTCAAACTTAGATCTCAAAA 57.126 32.000 0.00 0.00 29.64 2.44
300 301 7.873719 TGTGGTCAAACTTAGATCTCAAAAA 57.126 32.000 0.00 0.00 0.00 1.94
319 320 4.593597 AAAATACGGACGCACTACATTG 57.406 40.909 0.00 0.00 0.00 2.82
320 321 2.953466 ATACGGACGCACTACATTGT 57.047 45.000 0.00 0.00 0.00 2.71
321 322 4.374843 AATACGGACGCACTACATTGTA 57.625 40.909 0.00 0.00 0.00 2.41
322 323 2.728690 ACGGACGCACTACATTGTAA 57.271 45.000 0.00 0.00 0.00 2.41
323 324 3.029320 ACGGACGCACTACATTGTAAA 57.971 42.857 0.00 0.00 0.00 2.01
324 325 3.391965 ACGGACGCACTACATTGTAAAA 58.608 40.909 0.00 0.00 0.00 1.52
325 326 3.998341 ACGGACGCACTACATTGTAAAAT 59.002 39.130 0.00 0.00 0.00 1.82
326 327 4.142988 ACGGACGCACTACATTGTAAAATG 60.143 41.667 3.94 3.94 36.29 2.32
327 328 4.658071 GGACGCACTACATTGTAAAATGG 58.342 43.478 10.41 0.00 34.56 3.16
328 329 4.393680 GGACGCACTACATTGTAAAATGGA 59.606 41.667 10.41 0.05 34.56 3.41
329 330 5.447279 GGACGCACTACATTGTAAAATGGAG 60.447 44.000 15.40 15.40 44.77 3.86
330 331 4.394920 ACGCACTACATTGTAAAATGGAGG 59.605 41.667 20.12 11.13 43.78 4.30
331 332 4.634004 CGCACTACATTGTAAAATGGAGGA 59.366 41.667 20.12 0.00 43.78 3.71
332 333 5.123186 CGCACTACATTGTAAAATGGAGGAA 59.877 40.000 20.12 0.00 43.78 3.36
333 334 6.555315 GCACTACATTGTAAAATGGAGGAAG 58.445 40.000 20.12 11.43 43.78 3.46
334 335 6.151144 GCACTACATTGTAAAATGGAGGAAGT 59.849 38.462 20.12 7.98 43.78 3.01
335 336 7.335924 GCACTACATTGTAAAATGGAGGAAGTA 59.664 37.037 20.12 0.00 43.78 2.24
336 337 8.665685 CACTACATTGTAAAATGGAGGAAGTAC 58.334 37.037 20.12 0.00 43.78 2.73
337 338 8.380099 ACTACATTGTAAAATGGAGGAAGTACA 58.620 33.333 20.12 0.00 43.78 2.90
338 339 9.396022 CTACATTGTAAAATGGAGGAAGTACAT 57.604 33.333 9.79 0.00 37.44 2.29
339 340 8.055279 ACATTGTAAAATGGAGGAAGTACATG 57.945 34.615 10.41 0.00 34.56 3.21
340 341 6.509418 TTGTAAAATGGAGGAAGTACATGC 57.491 37.500 0.00 0.00 0.00 4.06
341 342 5.565509 TGTAAAATGGAGGAAGTACATGCA 58.434 37.500 0.00 0.00 34.87 3.96
342 343 6.007076 TGTAAAATGGAGGAAGTACATGCAA 58.993 36.000 0.00 0.00 33.98 4.08
343 344 6.663093 TGTAAAATGGAGGAAGTACATGCAAT 59.337 34.615 0.00 0.00 33.98 3.56
356 357 1.326245 CATGCAATGCAGGCAAAATCG 59.674 47.619 18.29 3.53 45.60 3.34
357 358 1.015085 TGCAATGCAGGCAAAATCGC 61.015 50.000 12.89 0.00 38.54 4.58
358 359 0.738412 GCAATGCAGGCAAAATCGCT 60.738 50.000 0.00 0.00 0.00 4.93
359 360 0.996462 CAATGCAGGCAAAATCGCTG 59.004 50.000 0.00 0.00 0.00 5.18
360 361 0.738412 AATGCAGGCAAAATCGCTGC 60.738 50.000 0.00 0.00 39.16 5.25
361 362 2.877360 ATGCAGGCAAAATCGCTGCG 62.877 55.000 17.25 17.25 40.88 5.18
362 363 2.202518 CAGGCAAAATCGCTGCGG 60.203 61.111 23.03 6.54 40.88 5.69
363 364 3.443045 AGGCAAAATCGCTGCGGG 61.443 61.111 23.03 8.06 40.88 6.13
365 366 4.418401 GCAAAATCGCTGCGGGCA 62.418 61.111 23.03 2.82 41.91 5.36
366 367 2.257980 CAAAATCGCTGCGGGCAA 59.742 55.556 23.03 2.39 41.91 4.52
367 368 2.088178 CAAAATCGCTGCGGGCAAC 61.088 57.895 23.03 0.00 41.91 4.17
368 369 2.268076 AAAATCGCTGCGGGCAACT 61.268 52.632 23.03 0.00 41.91 3.16
369 370 0.958382 AAAATCGCTGCGGGCAACTA 60.958 50.000 23.03 0.26 41.91 2.24
370 371 0.958382 AAATCGCTGCGGGCAACTAA 60.958 50.000 23.03 0.00 41.91 2.24
371 372 0.958382 AATCGCTGCGGGCAACTAAA 60.958 50.000 23.03 0.00 41.91 1.85
372 373 1.644786 ATCGCTGCGGGCAACTAAAC 61.645 55.000 23.03 0.00 41.91 2.01
373 374 2.175811 GCTGCGGGCAACTAAACG 59.824 61.111 0.00 0.00 41.35 3.60
377 378 4.454717 CGGGCAACTAAACGCGCC 62.455 66.667 5.73 0.00 44.10 6.53
421 422 5.423704 TCATCGGTGGTCCATTAAGTTTA 57.576 39.130 0.00 0.00 0.00 2.01
465 466 2.224793 GGCAACTACTTCCAACCTTCCT 60.225 50.000 0.00 0.00 0.00 3.36
481 482 6.800072 ACCTTCCTGTGGAATTTGTTTAAA 57.200 33.333 0.00 0.00 41.23 1.52
486 487 5.994668 TCCTGTGGAATTTGTTTAAATTGGC 59.005 36.000 3.01 0.00 44.35 4.52
532 533 0.035152 TGCTAACTGGCCACCATCTG 60.035 55.000 0.00 0.00 30.82 2.90
534 535 1.745141 GCTAACTGGCCACCATCTGAG 60.745 57.143 0.00 0.00 30.82 3.35
535 536 1.833630 CTAACTGGCCACCATCTGAGA 59.166 52.381 0.00 0.00 30.82 3.27
539 547 1.489649 CTGGCCACCATCTGAGAAGAT 59.510 52.381 0.00 0.00 30.82 2.40
576 584 0.034337 GTCGGTGGCTCAAACCAGTA 59.966 55.000 0.00 0.00 41.46 2.74
626 634 4.317628 GCGTTTAACGTCCGAGATTTATCC 60.318 45.833 18.78 0.00 44.73 2.59
658 666 2.654749 TCGACCATAGCAAGTCTGTG 57.345 50.000 0.00 0.00 34.14 3.66
690 698 2.071688 AAGTGACGTGCTGATCTGAC 57.928 50.000 3.42 0.00 0.00 3.51
823 861 0.396435 TGCCATGAAACTCGACTGGT 59.604 50.000 0.00 0.00 0.00 4.00
826 864 2.766313 CCATGAAACTCGACTGGTTGA 58.234 47.619 0.00 0.00 0.00 3.18
836 874 2.223144 TCGACTGGTTGAAATCTTTGCG 59.777 45.455 0.00 0.00 0.00 4.85
846 884 2.235536 AATCTTTGCGCGTACGGCAC 62.236 55.000 24.60 10.00 43.84 5.01
852 893 3.109547 CGCGTACGGCACACACAT 61.110 61.111 18.39 0.00 43.84 3.21
853 894 2.663478 CGCGTACGGCACACACATT 61.663 57.895 18.39 0.00 43.84 2.71
854 895 1.345660 CGCGTACGGCACACACATTA 61.346 55.000 18.39 0.00 43.84 1.90
855 896 0.094046 GCGTACGGCACACACATTAC 59.906 55.000 18.39 0.00 42.87 1.89
856 897 1.705256 CGTACGGCACACACATTACT 58.295 50.000 7.57 0.00 0.00 2.24
857 898 2.063266 CGTACGGCACACACATTACTT 58.937 47.619 7.57 0.00 0.00 2.24
858 899 2.091588 CGTACGGCACACACATTACTTC 59.908 50.000 7.57 0.00 0.00 3.01
859 900 2.543777 ACGGCACACACATTACTTCT 57.456 45.000 0.00 0.00 0.00 2.85
860 901 2.846193 ACGGCACACACATTACTTCTT 58.154 42.857 0.00 0.00 0.00 2.52
861 902 3.211045 ACGGCACACACATTACTTCTTT 58.789 40.909 0.00 0.00 0.00 2.52
862 903 3.630312 ACGGCACACACATTACTTCTTTT 59.370 39.130 0.00 0.00 0.00 2.27
863 904 4.097286 ACGGCACACACATTACTTCTTTTT 59.903 37.500 0.00 0.00 0.00 1.94
880 921 1.300481 TTTTTCGACATGACGGCACA 58.700 45.000 17.11 0.00 0.00 4.57
881 922 0.584396 TTTTCGACATGACGGCACAC 59.416 50.000 17.11 0.00 0.00 3.82
882 923 0.530870 TTTCGACATGACGGCACACA 60.531 50.000 17.11 0.00 0.00 3.72
883 924 0.320334 TTCGACATGACGGCACACAT 60.320 50.000 17.11 0.00 0.00 3.21
884 925 0.320334 TCGACATGACGGCACACATT 60.320 50.000 17.11 0.00 0.00 2.71
885 926 0.516877 CGACATGACGGCACACATTT 59.483 50.000 9.78 0.00 0.00 2.32
886 927 1.464023 CGACATGACGGCACACATTTC 60.464 52.381 9.78 0.00 0.00 2.17
887 928 1.806542 GACATGACGGCACACATTTCT 59.193 47.619 0.00 0.00 0.00 2.52
888 929 3.000041 GACATGACGGCACACATTTCTA 59.000 45.455 0.00 0.00 0.00 2.10
889 930 3.002791 ACATGACGGCACACATTTCTAG 58.997 45.455 0.00 0.00 0.00 2.43
897 938 4.381185 CGGCACACATTTCTAGTACCACTA 60.381 45.833 0.00 0.00 0.00 2.74
900 941 6.127535 GGCACACATTTCTAGTACCACTAGTA 60.128 42.308 11.95 1.68 46.31 1.82
984 1028 1.193323 CCACACTCAGCTGAGGATCT 58.807 55.000 39.42 21.48 46.13 2.75
996 1040 3.837578 GGATCTAGTCCGGCGACA 58.162 61.111 9.30 0.00 41.87 4.35
1036 1080 6.526674 GGTTCCGTTTACTTGCAATATCTTTG 59.473 38.462 0.00 0.00 0.00 2.77
1060 1104 7.786030 TGGAAATTTTGTGTGGATTCTGTTTA 58.214 30.769 0.00 0.00 0.00 2.01
1066 1110 5.132897 TGTGTGGATTCTGTTTAATTGGC 57.867 39.130 0.00 0.00 0.00 4.52
1175 1236 3.654020 GCCATGAAGATCGCGGCC 61.654 66.667 6.13 0.00 36.73 6.13
1180 1241 4.223964 GAAGATCGCGGCCGCAAC 62.224 66.667 45.26 33.71 42.06 4.17
1193 1254 2.384309 CGCAACCGATGGTACGCAA 61.384 57.895 9.96 0.00 34.98 4.85
1207 1268 2.118404 CGCAACGCACCCCCATATT 61.118 57.895 0.00 0.00 0.00 1.28
1208 1269 0.816018 CGCAACGCACCCCCATATTA 60.816 55.000 0.00 0.00 0.00 0.98
1209 1270 1.616159 GCAACGCACCCCCATATTAT 58.384 50.000 0.00 0.00 0.00 1.28
1258 1322 1.812235 ATTGCTCAATGCGTCTGTGA 58.188 45.000 0.00 0.00 46.63 3.58
1261 1332 1.338011 TGCTCAATGCGTCTGTGATGA 60.338 47.619 0.00 0.00 46.63 2.92
1402 1480 2.951745 GACATCGTCGAGCTGCGG 60.952 66.667 0.00 0.00 41.33 5.69
1542 1620 2.158928 ACAACAGTTACACTACGGCCAA 60.159 45.455 2.24 0.00 0.00 4.52
1613 1697 0.378610 GTACGAGTACTACCCACCGC 59.621 60.000 0.00 0.00 33.45 5.68
1654 1738 2.337170 CACCACGAGTACACGGCA 59.663 61.111 16.97 0.00 37.61 5.69
1663 1747 2.758327 TACACGGCAGGCGATCCT 60.758 61.111 25.17 0.00 45.66 3.24
1664 1748 2.355986 TACACGGCAGGCGATCCTT 61.356 57.895 25.17 0.00 41.93 3.36
1720 1804 2.426522 CTCTTGGTTTGGCGATTCTGA 58.573 47.619 0.00 0.00 0.00 3.27
1722 1806 2.749076 TCTTGGTTTGGCGATTCTGATG 59.251 45.455 0.00 0.00 0.00 3.07
1727 1811 4.520874 TGGTTTGGCGATTCTGATGTTTTA 59.479 37.500 0.00 0.00 0.00 1.52
1774 1898 0.248498 ATCGTGTGTAGTGCGATCCG 60.248 55.000 0.00 0.00 40.76 4.18
1776 1900 0.731514 CGTGTGTAGTGCGATCCGTT 60.732 55.000 0.00 0.00 0.00 4.44
1781 1905 2.727392 TAGTGCGATCCGTTGGGGG 61.727 63.158 0.00 0.00 36.01 5.40
1804 1928 2.188062 ATTTTTGTCGGCCCTCGTTA 57.812 45.000 0.00 0.00 40.32 3.18
1871 1995 0.670546 AGACGTGGAGTGCGAATTGG 60.671 55.000 0.00 0.00 0.00 3.16
1914 2637 2.378038 TGGTTCTATGCCTTGGATTGC 58.622 47.619 0.00 0.00 0.00 3.56
2005 2735 2.234661 GCAAGCCTAAGGGAATTTTGCT 59.765 45.455 0.00 0.00 35.92 3.91
2033 2763 0.375454 TGTGTCAAAACGCCACGAAG 59.625 50.000 0.00 0.00 34.91 3.79
2037 2767 2.106418 GTCAAAACGCCACGAAGTTTC 58.894 47.619 0.00 0.00 41.61 2.78
2062 2804 4.154015 CACACGAGCATCTTGGATGTAAAA 59.846 41.667 8.93 0.00 38.91 1.52
2063 2805 4.943705 ACACGAGCATCTTGGATGTAAAAT 59.056 37.500 8.93 0.00 38.91 1.82
2064 2806 6.037062 CACACGAGCATCTTGGATGTAAAATA 59.963 38.462 8.93 0.00 38.91 1.40
2098 2840 7.883229 AAAAGAATGTTGTTGACGTTTTTCT 57.117 28.000 0.00 0.00 37.60 2.52
2099 2841 8.973835 AAAAGAATGTTGTTGACGTTTTTCTA 57.026 26.923 0.00 0.00 37.60 2.10
2100 2842 9.581099 AAAAGAATGTTGTTGACGTTTTTCTAT 57.419 25.926 0.00 0.00 37.60 1.98
2101 2843 9.581099 AAAGAATGTTGTTGACGTTTTTCTATT 57.419 25.926 0.00 0.00 37.60 1.73
2102 2844 9.581099 AAGAATGTTGTTGACGTTTTTCTATTT 57.419 25.926 0.00 0.00 37.60 1.40
2103 2845 9.581099 AGAATGTTGTTGACGTTTTTCTATTTT 57.419 25.926 0.00 0.00 37.60 1.82
2137 2879 7.860872 AGAATGTTGTTGACGTTTTCCTATTTC 59.139 33.333 0.00 0.00 37.60 2.17
2160 2902 7.391148 TCTAAGAATTTTACTGTTCATGGGC 57.609 36.000 0.00 0.00 0.00 5.36
2292 3035 4.036971 CAGTTCGGGGTGAAGATAGTCTAG 59.963 50.000 0.00 0.00 37.23 2.43
2338 3081 1.436336 GCTCTAAGCCCTAACGCGA 59.564 57.895 15.93 0.00 34.48 5.87
2412 3155 2.776526 AGGGGGCGGCCATGATTA 60.777 61.111 30.95 0.00 0.00 1.75
2415 3158 1.045911 GGGGGCGGCCATGATTAAAA 61.046 55.000 30.95 0.00 0.00 1.52
2421 3164 2.600731 CGGCCATGATTAAAAACGCAA 58.399 42.857 2.24 0.00 0.00 4.85
2424 3167 4.180057 GGCCATGATTAAAAACGCAATCA 58.820 39.130 0.00 0.00 43.34 2.57
2464 3207 1.306141 CAGGGGACTAGCAGGACCA 60.306 63.158 0.00 0.00 40.21 4.02
2469 3212 0.820871 GGACTAGCAGGACCACAGAG 59.179 60.000 0.00 0.00 0.00 3.35
2537 3280 0.608130 CACCAGTCGTTGAGGGATGA 59.392 55.000 0.00 0.00 0.00 2.92
2539 3282 0.898320 CCAGTCGTTGAGGGATGACT 59.102 55.000 0.00 0.00 44.57 3.41
2640 3383 1.780309 AGGAGGTGGTTCATGGTTTCA 59.220 47.619 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.059260 GTATGTCTTAGTTGGTCTGGTTAAAAA 57.941 33.333 0.00 0.00 0.00 1.94
21 22 8.434392 AGTATGTCTTAGTTGGTCTGGTTAAAA 58.566 33.333 0.00 0.00 0.00 1.52
22 23 7.970102 AGTATGTCTTAGTTGGTCTGGTTAAA 58.030 34.615 0.00 0.00 0.00 1.52
23 24 7.310237 GGAGTATGTCTTAGTTGGTCTGGTTAA 60.310 40.741 0.00 0.00 0.00 2.01
24 25 6.154021 GGAGTATGTCTTAGTTGGTCTGGTTA 59.846 42.308 0.00 0.00 0.00 2.85
25 26 5.046520 GGAGTATGTCTTAGTTGGTCTGGTT 60.047 44.000 0.00 0.00 0.00 3.67
26 27 4.466726 GGAGTATGTCTTAGTTGGTCTGGT 59.533 45.833 0.00 0.00 0.00 4.00
27 28 4.141914 GGGAGTATGTCTTAGTTGGTCTGG 60.142 50.000 0.00 0.00 0.00 3.86
28 29 4.712337 AGGGAGTATGTCTTAGTTGGTCTG 59.288 45.833 0.00 0.00 0.00 3.51
29 30 4.949121 AGGGAGTATGTCTTAGTTGGTCT 58.051 43.478 0.00 0.00 0.00 3.85
30 31 4.099727 GGAGGGAGTATGTCTTAGTTGGTC 59.900 50.000 0.00 0.00 0.00 4.02
31 32 4.031611 GGAGGGAGTATGTCTTAGTTGGT 58.968 47.826 0.00 0.00 0.00 3.67
32 33 4.290942 AGGAGGGAGTATGTCTTAGTTGG 58.709 47.826 0.00 0.00 0.00 3.77
33 34 5.941555 AAGGAGGGAGTATGTCTTAGTTG 57.058 43.478 0.00 0.00 0.00 3.16
34 35 5.425862 GGAAAGGAGGGAGTATGTCTTAGTT 59.574 44.000 0.00 0.00 0.00 2.24
35 36 4.963628 GGAAAGGAGGGAGTATGTCTTAGT 59.036 45.833 0.00 0.00 0.00 2.24
36 37 4.962995 TGGAAAGGAGGGAGTATGTCTTAG 59.037 45.833 0.00 0.00 0.00 2.18
37 38 4.955335 TGGAAAGGAGGGAGTATGTCTTA 58.045 43.478 0.00 0.00 0.00 2.10
38 39 3.803340 TGGAAAGGAGGGAGTATGTCTT 58.197 45.455 0.00 0.00 0.00 3.01
39 40 3.491766 TGGAAAGGAGGGAGTATGTCT 57.508 47.619 0.00 0.00 0.00 3.41
40 41 5.888982 TTATGGAAAGGAGGGAGTATGTC 57.111 43.478 0.00 0.00 0.00 3.06
41 42 5.672194 ACATTATGGAAAGGAGGGAGTATGT 59.328 40.000 0.00 0.00 0.00 2.29
42 43 6.192970 ACATTATGGAAAGGAGGGAGTATG 57.807 41.667 0.00 0.00 0.00 2.39
43 44 7.016661 CACTACATTATGGAAAGGAGGGAGTAT 59.983 40.741 0.00 0.00 0.00 2.12
44 45 6.326583 CACTACATTATGGAAAGGAGGGAGTA 59.673 42.308 0.00 0.00 0.00 2.59
45 46 5.131142 CACTACATTATGGAAAGGAGGGAGT 59.869 44.000 0.00 0.00 0.00 3.85
46 47 5.615289 CACTACATTATGGAAAGGAGGGAG 58.385 45.833 0.00 0.00 0.00 4.30
47 48 4.141482 GCACTACATTATGGAAAGGAGGGA 60.141 45.833 0.00 0.00 0.00 4.20
48 49 4.137543 GCACTACATTATGGAAAGGAGGG 58.862 47.826 0.00 0.00 0.00 4.30
49 50 4.576463 GTGCACTACATTATGGAAAGGAGG 59.424 45.833 10.32 0.00 0.00 4.30
50 51 4.576463 GGTGCACTACATTATGGAAAGGAG 59.424 45.833 17.98 0.00 0.00 3.69
51 52 4.523083 GGTGCACTACATTATGGAAAGGA 58.477 43.478 17.98 0.00 0.00 3.36
52 53 3.632145 GGGTGCACTACATTATGGAAAGG 59.368 47.826 17.98 0.00 0.00 3.11
53 54 3.312421 CGGGTGCACTACATTATGGAAAG 59.688 47.826 17.98 0.00 0.00 2.62
54 55 3.275143 CGGGTGCACTACATTATGGAAA 58.725 45.455 17.98 0.00 0.00 3.13
55 56 2.912771 CGGGTGCACTACATTATGGAA 58.087 47.619 17.98 0.00 0.00 3.53
56 57 1.474320 GCGGGTGCACTACATTATGGA 60.474 52.381 17.98 0.00 42.15 3.41
57 58 0.944386 GCGGGTGCACTACATTATGG 59.056 55.000 17.98 0.00 42.15 2.74
58 59 0.581529 CGCGGGTGCACTACATTATG 59.418 55.000 17.98 0.00 42.97 1.90
59 60 1.157870 GCGCGGGTGCACTACATTAT 61.158 55.000 17.98 0.00 42.97 1.28
60 61 1.812093 GCGCGGGTGCACTACATTA 60.812 57.895 17.98 0.00 42.97 1.90
61 62 3.124921 GCGCGGGTGCACTACATT 61.125 61.111 17.98 0.00 42.97 2.71
62 63 3.605749 AAGCGCGGGTGCACTACAT 62.606 57.895 17.98 0.00 42.97 2.29
63 64 4.308458 AAGCGCGGGTGCACTACA 62.308 61.111 17.98 0.00 42.97 2.74
64 65 3.488090 GAAGCGCGGGTGCACTAC 61.488 66.667 17.98 9.36 42.97 2.73
65 66 4.752879 GGAAGCGCGGGTGCACTA 62.753 66.667 17.98 0.00 42.97 2.74
70 71 3.997064 CTCTCAGGAAGCGCGGGTG 62.997 68.421 8.83 0.00 0.00 4.61
71 72 3.764466 CTCTCAGGAAGCGCGGGT 61.764 66.667 8.83 0.00 0.00 5.28
73 74 2.284798 TTAGCTCTCAGGAAGCGCGG 62.285 60.000 8.83 0.00 40.75 6.46
74 75 0.869454 CTTAGCTCTCAGGAAGCGCG 60.869 60.000 0.00 0.00 40.75 6.86
75 76 0.174617 ACTTAGCTCTCAGGAAGCGC 59.825 55.000 0.00 0.00 35.89 5.92
76 77 2.663826 AACTTAGCTCTCAGGAAGCG 57.336 50.000 0.00 0.00 0.00 4.68
77 78 3.682377 GTCAAACTTAGCTCTCAGGAAGC 59.318 47.826 0.00 0.00 0.00 3.86
78 79 4.249661 GGTCAAACTTAGCTCTCAGGAAG 58.750 47.826 0.00 0.00 0.00 3.46
79 80 3.306088 CGGTCAAACTTAGCTCTCAGGAA 60.306 47.826 0.00 0.00 0.00 3.36
80 81 2.231478 CGGTCAAACTTAGCTCTCAGGA 59.769 50.000 0.00 0.00 0.00 3.86
81 82 2.028930 ACGGTCAAACTTAGCTCTCAGG 60.029 50.000 0.00 0.00 0.00 3.86
82 83 3.305398 ACGGTCAAACTTAGCTCTCAG 57.695 47.619 0.00 0.00 0.00 3.35
83 84 4.859304 TTACGGTCAAACTTAGCTCTCA 57.141 40.909 0.00 0.00 0.00 3.27
84 85 6.367969 TGAATTTACGGTCAAACTTAGCTCTC 59.632 38.462 0.00 0.00 0.00 3.20
85 86 6.228258 TGAATTTACGGTCAAACTTAGCTCT 58.772 36.000 0.00 0.00 0.00 4.09
86 87 6.476243 TGAATTTACGGTCAAACTTAGCTC 57.524 37.500 0.00 0.00 0.00 4.09
87 88 6.293790 GGTTGAATTTACGGTCAAACTTAGCT 60.294 38.462 0.00 0.00 38.24 3.32
88 89 5.854866 GGTTGAATTTACGGTCAAACTTAGC 59.145 40.000 0.00 0.00 38.24 3.09
89 90 6.961576 TGGTTGAATTTACGGTCAAACTTAG 58.038 36.000 3.39 0.00 41.20 2.18
90 91 6.939132 TGGTTGAATTTACGGTCAAACTTA 57.061 33.333 3.39 0.00 41.20 2.24
91 92 5.838531 TGGTTGAATTTACGGTCAAACTT 57.161 34.783 3.39 0.00 41.20 2.66
92 93 5.584442 GTTGGTTGAATTTACGGTCAAACT 58.416 37.500 3.39 0.00 41.20 2.66
93 94 4.438471 CGTTGGTTGAATTTACGGTCAAAC 59.562 41.667 0.00 0.00 41.04 2.93
94 95 4.334759 TCGTTGGTTGAATTTACGGTCAAA 59.665 37.500 0.00 0.00 35.60 2.69
95 96 3.875727 TCGTTGGTTGAATTTACGGTCAA 59.124 39.130 0.00 0.00 33.37 3.18
96 97 3.464907 TCGTTGGTTGAATTTACGGTCA 58.535 40.909 0.00 0.00 33.37 4.02
97 98 3.742369 TCTCGTTGGTTGAATTTACGGTC 59.258 43.478 0.00 0.00 33.37 4.79
98 99 3.731089 TCTCGTTGGTTGAATTTACGGT 58.269 40.909 0.00 0.00 33.37 4.83
99 100 4.491924 CGATCTCGTTGGTTGAATTTACGG 60.492 45.833 0.00 0.00 33.37 4.02
100 101 4.325204 TCGATCTCGTTGGTTGAATTTACG 59.675 41.667 0.00 0.00 40.80 3.18
101 102 5.773239 TCGATCTCGTTGGTTGAATTTAC 57.227 39.130 0.00 0.00 40.80 2.01
102 103 5.220586 GCATCGATCTCGTTGGTTGAATTTA 60.221 40.000 11.39 0.00 38.91 1.40
103 104 4.437390 GCATCGATCTCGTTGGTTGAATTT 60.437 41.667 11.39 0.00 38.91 1.82
104 105 3.063997 GCATCGATCTCGTTGGTTGAATT 59.936 43.478 11.39 0.00 38.91 2.17
105 106 2.609459 GCATCGATCTCGTTGGTTGAAT 59.391 45.455 11.39 0.00 38.91 2.57
106 107 1.999735 GCATCGATCTCGTTGGTTGAA 59.000 47.619 11.39 0.00 38.91 2.69
107 108 1.640428 GCATCGATCTCGTTGGTTGA 58.360 50.000 11.39 0.00 38.91 3.18
108 109 0.652592 GGCATCGATCTCGTTGGTTG 59.347 55.000 11.39 0.00 38.91 3.77
109 110 0.806102 CGGCATCGATCTCGTTGGTT 60.806 55.000 11.39 0.00 38.91 3.67
110 111 1.226974 CGGCATCGATCTCGTTGGT 60.227 57.895 11.39 0.00 38.91 3.67
111 112 1.951130 CCGGCATCGATCTCGTTGG 60.951 63.158 13.58 0.19 38.91 3.77
112 113 1.951130 CCCGGCATCGATCTCGTTG 60.951 63.158 13.58 6.34 40.77 4.10
113 114 2.076622 CTCCCGGCATCGATCTCGTT 62.077 60.000 13.58 0.00 40.80 3.85
114 115 2.518587 TCCCGGCATCGATCTCGT 60.519 61.111 13.58 0.00 40.80 4.18
115 116 2.256764 CTCCCGGCATCGATCTCG 59.743 66.667 0.00 2.17 39.00 4.04
116 117 2.048690 GCTCCCGGCATCGATCTC 60.049 66.667 0.00 0.00 41.35 2.75
125 126 1.067060 GGTATGATTTTTGCTCCCGGC 59.933 52.381 0.00 0.00 42.22 6.13
126 127 2.099098 GTGGTATGATTTTTGCTCCCGG 59.901 50.000 0.00 0.00 0.00 5.73
127 128 2.099098 GGTGGTATGATTTTTGCTCCCG 59.901 50.000 0.00 0.00 0.00 5.14
128 129 3.096092 TGGTGGTATGATTTTTGCTCCC 58.904 45.455 0.00 0.00 0.00 4.30
129 130 4.799564 TTGGTGGTATGATTTTTGCTCC 57.200 40.909 0.00 0.00 0.00 4.70
130 131 7.361116 CCAAATTTGGTGGTATGATTTTTGCTC 60.361 37.037 26.34 0.00 43.43 4.26
131 132 6.430616 CCAAATTTGGTGGTATGATTTTTGCT 59.569 34.615 26.34 0.00 43.43 3.91
132 133 6.610456 CCAAATTTGGTGGTATGATTTTTGC 58.390 36.000 26.34 0.00 43.43 3.68
137 138 8.162746 AATTTGTCCAAATTTGGTGGTATGATT 58.837 29.630 31.41 20.26 45.67 2.57
138 139 7.688343 AATTTGTCCAAATTTGGTGGTATGAT 58.312 30.769 31.41 16.66 45.67 2.45
139 140 7.072263 AATTTGTCCAAATTTGGTGGTATGA 57.928 32.000 31.41 12.09 45.67 2.15
151 152 7.654022 ATTATACCACCGAATTTGTCCAAAT 57.346 32.000 0.00 0.00 42.35 2.32
152 153 7.469537 AATTATACCACCGAATTTGTCCAAA 57.530 32.000 0.00 0.00 34.46 3.28
153 154 7.469537 AAATTATACCACCGAATTTGTCCAA 57.530 32.000 0.00 0.00 32.83 3.53
154 155 7.469537 AAAATTATACCACCGAATTTGTCCA 57.530 32.000 0.00 0.00 34.01 4.02
155 156 7.201487 GCAAAAATTATACCACCGAATTTGTCC 60.201 37.037 0.00 0.00 34.01 4.02
156 157 7.544217 AGCAAAAATTATACCACCGAATTTGTC 59.456 33.333 0.00 0.00 34.01 3.18
157 158 7.382898 AGCAAAAATTATACCACCGAATTTGT 58.617 30.769 0.00 0.00 34.01 2.83
158 159 7.010091 GGAGCAAAAATTATACCACCGAATTTG 59.990 37.037 0.00 0.00 34.01 2.32
159 160 7.039270 GGAGCAAAAATTATACCACCGAATTT 58.961 34.615 0.00 0.00 34.94 1.82
160 161 6.153680 TGGAGCAAAAATTATACCACCGAATT 59.846 34.615 0.00 0.00 0.00 2.17
161 162 5.654650 TGGAGCAAAAATTATACCACCGAAT 59.345 36.000 0.00 0.00 0.00 3.34
162 163 5.010933 TGGAGCAAAAATTATACCACCGAA 58.989 37.500 0.00 0.00 0.00 4.30
163 164 4.590918 TGGAGCAAAAATTATACCACCGA 58.409 39.130 0.00 0.00 0.00 4.69
164 165 4.733523 GCTGGAGCAAAAATTATACCACCG 60.734 45.833 0.00 0.00 41.59 4.94
165 166 4.441495 GGCTGGAGCAAAAATTATACCACC 60.441 45.833 0.20 0.00 44.36 4.61
166 167 4.682787 GGCTGGAGCAAAAATTATACCAC 58.317 43.478 0.20 0.00 44.36 4.16
167 168 3.380004 CGGCTGGAGCAAAAATTATACCA 59.620 43.478 0.20 0.00 44.36 3.25
168 169 3.795488 GCGGCTGGAGCAAAAATTATACC 60.795 47.826 0.20 0.00 44.36 2.73
169 170 3.181491 TGCGGCTGGAGCAAAAATTATAC 60.181 43.478 0.00 0.00 42.18 1.47
170 171 3.020274 TGCGGCTGGAGCAAAAATTATA 58.980 40.909 0.00 0.00 42.18 0.98
171 172 1.824230 TGCGGCTGGAGCAAAAATTAT 59.176 42.857 0.00 0.00 42.18 1.28
172 173 1.252175 TGCGGCTGGAGCAAAAATTA 58.748 45.000 0.00 0.00 42.18 1.40
173 174 2.048601 TGCGGCTGGAGCAAAAATT 58.951 47.368 0.00 0.00 42.18 1.82
174 175 3.776158 TGCGGCTGGAGCAAAAAT 58.224 50.000 0.00 0.00 42.18 1.82
188 189 0.298707 CATCAACGAGACCGATTGCG 59.701 55.000 0.00 0.00 39.50 4.85
189 190 1.640428 TCATCAACGAGACCGATTGC 58.360 50.000 0.00 0.00 39.50 3.56
190 191 4.864916 ATTTCATCAACGAGACCGATTG 57.135 40.909 0.00 0.00 39.50 2.67
191 192 5.181245 ACAAATTTCATCAACGAGACCGATT 59.819 36.000 0.00 0.00 39.50 3.34
192 193 4.695455 ACAAATTTCATCAACGAGACCGAT 59.305 37.500 0.00 0.00 39.50 4.18
193 194 4.062293 ACAAATTTCATCAACGAGACCGA 58.938 39.130 0.00 0.00 39.50 4.69
194 195 4.151070 CACAAATTTCATCAACGAGACCG 58.849 43.478 0.00 0.00 42.50 4.79
195 196 4.023193 ACCACAAATTTCATCAACGAGACC 60.023 41.667 0.00 0.00 0.00 3.85
196 197 5.108385 ACCACAAATTTCATCAACGAGAC 57.892 39.130 0.00 0.00 0.00 3.36
197 198 4.819088 TGACCACAAATTTCATCAACGAGA 59.181 37.500 0.00 0.00 0.00 4.04
198 199 5.107109 TGACCACAAATTTCATCAACGAG 57.893 39.130 0.00 0.00 0.00 4.18
199 200 5.506686 TTGACCACAAATTTCATCAACGA 57.493 34.783 0.00 0.00 32.73 3.85
200 201 5.748152 AGTTTGACCACAAATTTCATCAACG 59.252 36.000 0.00 0.00 45.71 4.10
201 202 7.538303 AAGTTTGACCACAAATTTCATCAAC 57.462 32.000 0.00 0.00 45.71 3.18
202 203 8.558973 AAAAGTTTGACCACAAATTTCATCAA 57.441 26.923 0.00 0.00 45.71 2.57
203 204 8.558973 AAAAAGTTTGACCACAAATTTCATCA 57.441 26.923 0.00 0.00 45.71 3.07
229 230 7.984050 TGTAAGCAATCCAAACTTGATGAAAAA 59.016 29.630 0.00 0.00 0.00 1.94
230 231 7.495901 TGTAAGCAATCCAAACTTGATGAAAA 58.504 30.769 0.00 0.00 0.00 2.29
231 232 7.048629 TGTAAGCAATCCAAACTTGATGAAA 57.951 32.000 0.00 0.00 0.00 2.69
232 233 6.647334 TGTAAGCAATCCAAACTTGATGAA 57.353 33.333 0.00 0.00 0.00 2.57
233 234 6.433716 TCATGTAAGCAATCCAAACTTGATGA 59.566 34.615 0.00 0.00 0.00 2.92
234 235 6.529125 GTCATGTAAGCAATCCAAACTTGATG 59.471 38.462 0.00 0.00 30.20 3.07
235 236 6.435277 AGTCATGTAAGCAATCCAAACTTGAT 59.565 34.615 0.00 0.00 30.20 2.57
236 237 5.769662 AGTCATGTAAGCAATCCAAACTTGA 59.230 36.000 0.00 0.00 0.00 3.02
237 238 5.860182 CAGTCATGTAAGCAATCCAAACTTG 59.140 40.000 0.00 0.00 0.00 3.16
238 239 5.536161 ACAGTCATGTAAGCAATCCAAACTT 59.464 36.000 0.00 0.00 38.09 2.66
239 240 5.072741 ACAGTCATGTAAGCAATCCAAACT 58.927 37.500 0.00 0.00 38.09 2.66
240 241 5.048782 TGACAGTCATGTAAGCAATCCAAAC 60.049 40.000 0.00 0.00 40.68 2.93
241 242 5.048782 GTGACAGTCATGTAAGCAATCCAAA 60.049 40.000 6.51 0.00 40.68 3.28
242 243 4.455533 GTGACAGTCATGTAAGCAATCCAA 59.544 41.667 6.51 0.00 40.68 3.53
243 244 4.002982 GTGACAGTCATGTAAGCAATCCA 58.997 43.478 6.51 0.00 40.68 3.41
244 245 3.062639 CGTGACAGTCATGTAAGCAATCC 59.937 47.826 13.95 0.00 40.68 3.01
245 246 3.679980 ACGTGACAGTCATGTAAGCAATC 59.320 43.478 24.45 0.00 44.16 2.67
246 247 3.433274 CACGTGACAGTCATGTAAGCAAT 59.567 43.478 25.05 1.38 44.17 3.56
247 248 2.799978 CACGTGACAGTCATGTAAGCAA 59.200 45.455 25.05 0.00 44.17 3.91
248 249 2.403259 CACGTGACAGTCATGTAAGCA 58.597 47.619 25.05 0.00 44.17 3.91
249 250 1.726791 CCACGTGACAGTCATGTAAGC 59.273 52.381 25.05 2.53 44.17 3.09
250 251 3.026630 ACCACGTGACAGTCATGTAAG 57.973 47.619 25.05 20.92 44.17 2.34
251 252 4.587584 TTACCACGTGACAGTCATGTAA 57.412 40.909 25.05 14.93 44.17 2.41
252 253 4.587584 TTTACCACGTGACAGTCATGTA 57.412 40.909 25.05 10.00 44.17 2.29
253 254 3.462483 TTTACCACGTGACAGTCATGT 57.538 42.857 20.94 20.94 46.70 3.21
254 255 5.146460 CAAATTTACCACGTGACAGTCATG 58.854 41.667 19.30 19.62 39.24 3.07
255 256 4.819630 ACAAATTTACCACGTGACAGTCAT 59.180 37.500 19.30 0.00 0.00 3.06
256 257 4.034626 CACAAATTTACCACGTGACAGTCA 59.965 41.667 19.30 0.00 0.00 3.41
257 258 4.523813 CACAAATTTACCACGTGACAGTC 58.476 43.478 19.30 0.00 0.00 3.51
258 259 3.314080 CCACAAATTTACCACGTGACAGT 59.686 43.478 19.30 9.26 0.00 3.55
259 260 3.314080 ACCACAAATTTACCACGTGACAG 59.686 43.478 19.30 2.42 0.00 3.51
260 261 3.280295 ACCACAAATTTACCACGTGACA 58.720 40.909 19.30 0.17 0.00 3.58
261 262 3.312973 TGACCACAAATTTACCACGTGAC 59.687 43.478 19.30 2.99 0.00 3.67
262 263 3.542648 TGACCACAAATTTACCACGTGA 58.457 40.909 19.30 0.00 0.00 4.35
263 264 3.972950 TGACCACAAATTTACCACGTG 57.027 42.857 9.08 9.08 0.00 4.49
264 265 4.399934 AGTTTGACCACAAATTTACCACGT 59.600 37.500 0.00 0.00 45.71 4.49
265 266 4.927422 AGTTTGACCACAAATTTACCACG 58.073 39.130 0.00 0.00 45.71 4.94
266 267 7.708998 TCTAAGTTTGACCACAAATTTACCAC 58.291 34.615 0.00 0.00 45.71 4.16
267 268 7.883391 TCTAAGTTTGACCACAAATTTACCA 57.117 32.000 0.00 0.00 45.71 3.25
268 269 8.793592 AGATCTAAGTTTGACCACAAATTTACC 58.206 33.333 0.00 0.00 45.71 2.85
269 270 9.827411 GAGATCTAAGTTTGACCACAAATTTAC 57.173 33.333 0.00 0.00 45.71 2.01
270 271 9.567776 TGAGATCTAAGTTTGACCACAAATTTA 57.432 29.630 0.00 0.00 45.71 1.40
271 272 8.463930 TGAGATCTAAGTTTGACCACAAATTT 57.536 30.769 0.00 0.00 45.71 1.82
272 273 8.463930 TTGAGATCTAAGTTTGACCACAAATT 57.536 30.769 0.00 0.00 45.71 1.82
273 274 8.463930 TTTGAGATCTAAGTTTGACCACAAAT 57.536 30.769 0.00 0.00 45.71 2.32
274 275 7.873719 TTTGAGATCTAAGTTTGACCACAAA 57.126 32.000 0.00 1.31 42.66 2.83
275 276 7.873719 TTTTGAGATCTAAGTTTGACCACAA 57.126 32.000 0.00 0.00 0.00 3.33
276 277 7.873719 TTTTTGAGATCTAAGTTTGACCACA 57.126 32.000 0.00 0.00 0.00 4.17
297 298 4.453136 ACAATGTAGTGCGTCCGTATTTTT 59.547 37.500 0.00 0.00 0.00 1.94
298 299 3.998341 ACAATGTAGTGCGTCCGTATTTT 59.002 39.130 0.00 0.00 0.00 1.82
299 300 3.592059 ACAATGTAGTGCGTCCGTATTT 58.408 40.909 0.00 0.00 0.00 1.40
300 301 3.241067 ACAATGTAGTGCGTCCGTATT 57.759 42.857 0.00 0.00 0.00 1.89
301 302 2.953466 ACAATGTAGTGCGTCCGTAT 57.047 45.000 0.00 0.00 0.00 3.06
302 303 3.846423 TTACAATGTAGTGCGTCCGTA 57.154 42.857 0.00 0.00 0.00 4.02
303 304 2.728690 TTACAATGTAGTGCGTCCGT 57.271 45.000 0.00 0.00 0.00 4.69
304 305 4.331137 CATTTTACAATGTAGTGCGTCCG 58.669 43.478 0.00 0.00 35.86 4.79
305 306 4.393680 TCCATTTTACAATGTAGTGCGTCC 59.606 41.667 1.16 0.00 38.58 4.79
306 307 5.447279 CCTCCATTTTACAATGTAGTGCGTC 60.447 44.000 1.16 0.00 38.58 5.19
307 308 4.394920 CCTCCATTTTACAATGTAGTGCGT 59.605 41.667 1.16 0.00 38.58 5.24
308 309 4.634004 TCCTCCATTTTACAATGTAGTGCG 59.366 41.667 1.16 0.00 38.58 5.34
309 310 6.151144 ACTTCCTCCATTTTACAATGTAGTGC 59.849 38.462 1.16 0.00 38.58 4.40
310 311 7.687941 ACTTCCTCCATTTTACAATGTAGTG 57.312 36.000 1.16 0.00 38.58 2.74
311 312 8.380099 TGTACTTCCTCCATTTTACAATGTAGT 58.620 33.333 1.16 0.00 38.58 2.73
312 313 8.786826 TGTACTTCCTCCATTTTACAATGTAG 57.213 34.615 1.16 0.00 38.58 2.74
313 314 9.173021 CATGTACTTCCTCCATTTTACAATGTA 57.827 33.333 1.16 0.00 38.58 2.29
314 315 7.362920 GCATGTACTTCCTCCATTTTACAATGT 60.363 37.037 1.16 0.00 38.58 2.71
315 316 6.974622 GCATGTACTTCCTCCATTTTACAATG 59.025 38.462 0.00 0.00 39.79 2.82
316 317 6.663093 TGCATGTACTTCCTCCATTTTACAAT 59.337 34.615 0.00 0.00 0.00 2.71
317 318 6.007076 TGCATGTACTTCCTCCATTTTACAA 58.993 36.000 0.00 0.00 0.00 2.41
318 319 5.565509 TGCATGTACTTCCTCCATTTTACA 58.434 37.500 0.00 0.00 0.00 2.41
319 320 6.509418 TTGCATGTACTTCCTCCATTTTAC 57.491 37.500 0.00 0.00 0.00 2.01
320 321 6.405731 GCATTGCATGTACTTCCTCCATTTTA 60.406 38.462 3.15 0.00 0.00 1.52
321 322 5.625197 GCATTGCATGTACTTCCTCCATTTT 60.625 40.000 3.15 0.00 0.00 1.82
322 323 4.142093 GCATTGCATGTACTTCCTCCATTT 60.142 41.667 3.15 0.00 0.00 2.32
323 324 3.382546 GCATTGCATGTACTTCCTCCATT 59.617 43.478 3.15 0.00 0.00 3.16
324 325 2.954318 GCATTGCATGTACTTCCTCCAT 59.046 45.455 3.15 0.00 0.00 3.41
325 326 2.290832 TGCATTGCATGTACTTCCTCCA 60.291 45.455 7.38 0.00 31.71 3.86
326 327 2.357009 CTGCATTGCATGTACTTCCTCC 59.643 50.000 12.53 0.00 38.13 4.30
327 328 2.357009 CCTGCATTGCATGTACTTCCTC 59.643 50.000 12.53 0.00 38.13 3.71
328 329 2.372264 CCTGCATTGCATGTACTTCCT 58.628 47.619 12.53 0.00 38.13 3.36
329 330 1.202336 GCCTGCATTGCATGTACTTCC 60.202 52.381 12.53 0.00 38.13 3.46
330 331 1.473677 TGCCTGCATTGCATGTACTTC 59.526 47.619 12.53 0.00 38.13 3.01
331 332 1.548081 TGCCTGCATTGCATGTACTT 58.452 45.000 12.53 0.00 38.13 2.24
332 333 1.548081 TTGCCTGCATTGCATGTACT 58.452 45.000 12.53 0.00 38.13 2.73
333 334 2.367030 TTTGCCTGCATTGCATGTAC 57.633 45.000 12.53 2.83 38.13 2.90
334 335 3.523547 GATTTTGCCTGCATTGCATGTA 58.476 40.909 12.53 6.18 38.13 2.29
335 336 2.352388 GATTTTGCCTGCATTGCATGT 58.648 42.857 12.53 2.11 38.13 3.21
336 337 1.326245 CGATTTTGCCTGCATTGCATG 59.674 47.619 12.53 10.74 38.13 4.06
337 338 1.647346 CGATTTTGCCTGCATTGCAT 58.353 45.000 12.53 0.00 38.13 3.96
338 339 1.015085 GCGATTTTGCCTGCATTGCA 61.015 50.000 11.50 11.50 36.84 4.08
339 340 0.738412 AGCGATTTTGCCTGCATTGC 60.738 50.000 0.46 0.46 34.65 3.56
340 341 0.996462 CAGCGATTTTGCCTGCATTG 59.004 50.000 0.00 0.00 34.65 2.82
341 342 0.738412 GCAGCGATTTTGCCTGCATT 60.738 50.000 6.95 0.00 38.23 3.56
342 343 1.153706 GCAGCGATTTTGCCTGCAT 60.154 52.632 6.95 0.00 38.23 3.96
343 344 2.259204 GCAGCGATTTTGCCTGCA 59.741 55.556 6.95 0.00 38.23 4.41
344 345 2.877582 CGCAGCGATTTTGCCTGC 60.878 61.111 9.98 1.99 38.31 4.85
345 346 2.202518 CCGCAGCGATTTTGCCTG 60.203 61.111 18.75 0.00 38.31 4.85
346 347 3.443045 CCCGCAGCGATTTTGCCT 61.443 61.111 18.75 0.00 38.31 4.75
356 357 2.175811 CGTTTAGTTGCCCGCAGC 59.824 61.111 0.00 0.00 44.14 5.25
357 358 2.175811 GCGTTTAGTTGCCCGCAG 59.824 61.111 0.00 0.00 45.12 5.18
358 359 3.718097 CGCGTTTAGTTGCCCGCA 61.718 61.111 0.00 0.00 46.02 5.69
360 361 4.454717 GGCGCGTTTAGTTGCCCG 62.455 66.667 8.43 0.00 41.70 6.13
362 363 2.622962 AAGGGCGCGTTTAGTTGCC 61.623 57.895 8.43 0.00 46.82 4.52
363 364 1.442017 CAAGGGCGCGTTTAGTTGC 60.442 57.895 8.43 0.00 0.00 4.17
364 365 0.589223 TTCAAGGGCGCGTTTAGTTG 59.411 50.000 8.43 5.27 0.00 3.16
365 366 0.872388 CTTCAAGGGCGCGTTTAGTT 59.128 50.000 8.43 0.00 0.00 2.24
366 367 0.953960 CCTTCAAGGGCGCGTTTAGT 60.954 55.000 8.43 0.00 0.00 2.24
367 368 1.794222 CCTTCAAGGGCGCGTTTAG 59.206 57.895 8.43 0.00 0.00 1.85
368 369 2.329614 GCCTTCAAGGGCGCGTTTA 61.330 57.895 8.43 0.00 42.82 2.01
369 370 3.670377 GCCTTCAAGGGCGCGTTT 61.670 61.111 8.43 0.00 42.82 3.60
376 377 0.750911 GCTCCAGATGCCTTCAAGGG 60.751 60.000 5.33 0.00 35.37 3.95
377 378 0.034767 TGCTCCAGATGCCTTCAAGG 60.035 55.000 0.00 0.00 38.80 3.61
378 379 1.093159 GTGCTCCAGATGCCTTCAAG 58.907 55.000 0.00 0.00 0.00 3.02
387 388 1.126488 ACCGATGATGTGCTCCAGAT 58.874 50.000 0.00 0.00 0.00 2.90
389 390 0.812811 CCACCGATGATGTGCTCCAG 60.813 60.000 0.00 0.00 32.30 3.86
421 422 5.699458 CCACTTTGTCGTTATAGTCAAACCT 59.301 40.000 0.00 0.00 0.00 3.50
465 466 5.529060 GTGGCCAATTTAAACAAATTCCACA 59.471 36.000 7.24 7.04 41.64 4.17
481 482 1.640670 AGGTGATACCAAGTGGCCAAT 59.359 47.619 7.24 1.65 41.95 3.16
486 487 3.260884 ACAGTGTAGGTGATACCAAGTGG 59.739 47.826 0.00 0.00 41.95 4.00
548 556 1.180029 GAGCCACCGACCTGTTAGTA 58.820 55.000 0.00 0.00 0.00 1.82
551 559 0.759959 TTTGAGCCACCGACCTGTTA 59.240 50.000 0.00 0.00 0.00 2.41
563 571 1.751437 GGTGGATACTGGTTTGAGCC 58.249 55.000 0.00 0.00 37.61 4.70
576 584 2.359169 ACTGTGATCGGCGGTGGAT 61.359 57.895 7.21 0.00 0.00 3.41
658 666 3.617263 CACGTCACTTAATTCTACTGCCC 59.383 47.826 0.00 0.00 0.00 5.36
690 698 3.363970 GGCGATTTGTATATTGCGACTGG 60.364 47.826 0.00 0.00 36.04 4.00
776 785 3.145551 CCCCACCTCCGTAGTCCG 61.146 72.222 0.00 0.00 0.00 4.79
823 861 1.136197 CCGTACGCGCAAAGATTTCAA 60.136 47.619 10.49 0.00 36.67 2.69
826 864 1.133869 GCCGTACGCGCAAAGATTT 59.866 52.632 19.50 0.00 36.67 2.17
836 874 0.094046 GTAATGTGTGTGCCGTACGC 59.906 55.000 10.49 6.24 40.24 4.42
861 902 1.003331 GTGTGCCGTCATGTCGAAAAA 60.003 47.619 14.01 0.00 0.00 1.94
862 903 0.584396 GTGTGCCGTCATGTCGAAAA 59.416 50.000 14.01 0.00 0.00 2.29
863 904 0.530870 TGTGTGCCGTCATGTCGAAA 60.531 50.000 14.01 0.00 0.00 3.46
864 905 0.320334 ATGTGTGCCGTCATGTCGAA 60.320 50.000 14.01 0.00 0.00 3.71
865 906 0.320334 AATGTGTGCCGTCATGTCGA 60.320 50.000 14.01 0.00 0.00 4.20
866 907 0.516877 AAATGTGTGCCGTCATGTCG 59.483 50.000 5.32 5.32 0.00 4.35
867 908 1.806542 AGAAATGTGTGCCGTCATGTC 59.193 47.619 0.00 0.00 0.00 3.06
868 909 1.896220 AGAAATGTGTGCCGTCATGT 58.104 45.000 0.00 0.00 0.00 3.21
869 910 3.002791 ACTAGAAATGTGTGCCGTCATG 58.997 45.455 0.00 0.00 0.00 3.07
870 911 3.334583 ACTAGAAATGTGTGCCGTCAT 57.665 42.857 0.00 0.00 0.00 3.06
871 912 2.831685 ACTAGAAATGTGTGCCGTCA 57.168 45.000 0.00 0.00 0.00 4.35
872 913 2.928116 GGTACTAGAAATGTGTGCCGTC 59.072 50.000 0.00 0.00 0.00 4.79
873 914 2.300723 TGGTACTAGAAATGTGTGCCGT 59.699 45.455 0.00 0.00 38.92 5.68
874 915 2.671396 GTGGTACTAGAAATGTGTGCCG 59.329 50.000 0.00 0.00 38.92 5.69
875 916 3.939066 AGTGGTACTAGAAATGTGTGCC 58.061 45.455 0.00 0.00 37.07 5.01
897 938 7.784176 CGTTTGCTCGCTTTATATATTGTACT 58.216 34.615 0.00 0.00 0.00 2.73
898 939 7.972422 CGTTTGCTCGCTTTATATATTGTAC 57.028 36.000 0.00 0.00 0.00 2.90
928 969 1.152756 AGCGGTTTTTGGGTGAGCT 60.153 52.632 0.00 0.00 0.00 4.09
938 979 0.112412 AATGGACCAGGAGCGGTTTT 59.888 50.000 0.00 0.00 40.22 2.43
984 1028 2.035449 CCTCATATTTGTCGCCGGACTA 59.965 50.000 5.05 0.00 43.79 2.59
996 1040 2.103601 CGGAACCCGTACCCTCATATTT 59.896 50.000 0.00 0.00 42.73 1.40
1036 1080 8.655651 TTAAACAGAATCCACACAAAATTTCC 57.344 30.769 0.00 0.00 0.00 3.13
1077 1138 2.290641 ACAACACCAAGCAGAAATCGAC 59.709 45.455 0.00 0.00 0.00 4.20
1175 1236 2.384309 TTGCGTACCATCGGTTGCG 61.384 57.895 0.00 0.00 38.25 4.85
1180 1241 2.811747 TGCGTTGCGTACCATCGG 60.812 61.111 13.21 0.00 37.18 4.18
1193 1254 3.008704 GGAGTTATAATATGGGGGTGCGT 59.991 47.826 0.00 0.00 0.00 5.24
1207 1268 7.836685 AGTCTCATCAAGAACAGAGGAGTTATA 59.163 37.037 5.01 0.00 42.68 0.98
1208 1269 6.667414 AGTCTCATCAAGAACAGAGGAGTTAT 59.333 38.462 5.01 0.00 42.68 1.89
1209 1270 6.013379 AGTCTCATCAAGAACAGAGGAGTTA 58.987 40.000 5.01 0.00 42.68 2.24
1227 1288 2.845363 TGAGCAATTGCAGAGTCTCA 57.155 45.000 30.89 20.99 45.16 3.27
1258 1322 3.708631 ACTCCACTCCTGATCGAATTCAT 59.291 43.478 6.22 0.00 0.00 2.57
1261 1332 2.099921 CGACTCCACTCCTGATCGAATT 59.900 50.000 0.00 0.00 0.00 2.17
1558 1636 2.106332 CGGTGGTACTGATCGGCC 59.894 66.667 0.00 0.00 0.00 6.13
1663 1747 1.153107 CATGATGGAGCAGCCGGAA 60.153 57.895 5.05 0.00 40.66 4.30
1664 1748 1.048160 TACATGATGGAGCAGCCGGA 61.048 55.000 5.05 0.00 40.66 5.14
1720 1804 5.826586 TGAACGCAGTGACAAATAAAACAT 58.173 33.333 0.00 0.00 45.00 2.71
1722 1806 6.747659 AATGAACGCAGTGACAAATAAAAC 57.252 33.333 0.00 0.00 45.00 2.43
1727 1811 5.591099 AGAAAAATGAACGCAGTGACAAAT 58.409 33.333 0.00 0.00 45.00 2.32
1774 1898 1.875996 CGACAAAAATTGGCCCCCAAC 60.876 52.381 0.00 0.00 46.95 3.77
1776 1900 1.476007 CCGACAAAAATTGGCCCCCA 61.476 55.000 0.00 0.00 34.26 4.96
1804 1928 8.043710 CCCATTTGACTAAGAAACTACAGATCT 58.956 37.037 0.00 0.00 0.00 2.75
1871 1995 6.968904 CCAAAACATCAATGTAGCTATCACAC 59.031 38.462 0.00 0.00 40.80 3.82
1955 2685 7.867403 ACTTGTGGCTCTTATTGTGTTAAAATG 59.133 33.333 0.00 0.00 0.00 2.32
1957 2687 7.341445 ACTTGTGGCTCTTATTGTGTTAAAA 57.659 32.000 0.00 0.00 0.00 1.52
1984 2714 2.234661 AGCAAAATTCCCTTAGGCTTGC 59.765 45.455 0.00 10.25 35.84 4.01
2020 2750 3.519774 CGAAACTTCGTGGCGTTTT 57.480 47.368 3.68 0.00 45.09 2.43
2037 2767 1.086067 ATCCAAGATGCTCGTGTGCG 61.086 55.000 0.00 0.00 39.92 5.34
2073 2815 8.305441 AGAAAAACGTCAACAACATTCTTTTT 57.695 26.923 0.00 0.00 0.00 1.94
2074 2816 7.883229 AGAAAAACGTCAACAACATTCTTTT 57.117 28.000 0.00 0.00 0.00 2.27
2075 2817 9.581099 AATAGAAAAACGTCAACAACATTCTTT 57.419 25.926 0.00 0.00 0.00 2.52
2076 2818 9.581099 AAATAGAAAAACGTCAACAACATTCTT 57.419 25.926 0.00 0.00 0.00 2.52
2077 2819 9.581099 AAAATAGAAAAACGTCAACAACATTCT 57.419 25.926 0.00 0.00 0.00 2.40
2099 2841 9.965748 CGTCAACAACATTCTGTTTTTAAAAAT 57.034 25.926 16.02 0.00 38.77 1.82
2100 2842 8.979574 ACGTCAACAACATTCTGTTTTTAAAAA 58.020 25.926 9.31 9.31 38.77 1.94
2101 2843 8.522178 ACGTCAACAACATTCTGTTTTTAAAA 57.478 26.923 0.00 0.00 38.77 1.52
2102 2844 8.522178 AACGTCAACAACATTCTGTTTTTAAA 57.478 26.923 0.00 0.00 38.77 1.52
2103 2845 8.522178 AAACGTCAACAACATTCTGTTTTTAA 57.478 26.923 0.00 0.00 38.77 1.52
2104 2846 8.522178 AAAACGTCAACAACATTCTGTTTTTA 57.478 26.923 0.00 0.00 38.77 1.52
2137 2879 7.156876 TGCCCATGAACAGTAAAATTCTTAG 57.843 36.000 0.00 0.00 0.00 2.18
2147 2889 0.253044 GCTCCTGCCCATGAACAGTA 59.747 55.000 12.25 0.00 31.76 2.74
2160 2902 1.222936 GGGTGGTCAGATGCTCCTG 59.777 63.158 0.34 0.34 35.55 3.86
2195 2937 8.963130 CAATACAATGAAACGCAAACTCTTTTA 58.037 29.630 0.00 0.00 0.00 1.52
2203 2945 7.993821 TCTTTTCAATACAATGAAACGCAAA 57.006 28.000 2.20 0.00 46.06 3.68
2235 2978 7.571025 TCCCAGGAGGATTGTAACTATTAAAC 58.429 38.462 0.00 0.00 40.93 2.01
2236 2979 7.758820 TCCCAGGAGGATTGTAACTATTAAA 57.241 36.000 0.00 0.00 40.93 1.52
2292 3035 2.258726 GCAAACCTGGGACGTCCAC 61.259 63.158 34.40 23.56 41.46 4.02
2358 3101 3.265221 TCACAAAGATCAAGGATGAGGCT 59.735 43.478 0.00 0.00 39.39 4.58
2421 3164 1.203052 CTTTGGAAGCACCGCAATGAT 59.797 47.619 0.00 0.00 42.61 2.45
2499 3242 3.758554 GGTGGCAATACACAAGACATCTT 59.241 43.478 0.00 0.00 43.08 2.40
2502 3245 3.084039 CTGGTGGCAATACACAAGACAT 58.916 45.455 0.00 0.00 43.66 3.06
2512 3255 1.338674 CCTCAACGACTGGTGGCAATA 60.339 52.381 0.00 0.00 0.00 1.90
2537 3280 3.710722 CCCCGCCTGCTCAAGAGT 61.711 66.667 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.