Multiple sequence alignment - TraesCS3B01G139900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G139900 chr3B 100.000 3383 0 0 1 3383 126303861 126300479 0.000000e+00 6248.0
1 TraesCS3B01G139900 chr3B 86.029 1360 161 18 1019 2371 126310735 126309398 0.000000e+00 1432.0
2 TraesCS3B01G139900 chr3B 82.384 1720 222 40 714 2390 79978807 79980488 0.000000e+00 1423.0
3 TraesCS3B01G139900 chr3D 92.339 1971 92 26 674 2607 80479093 80477145 0.000000e+00 2748.0
4 TraesCS3B01G139900 chr3D 82.231 1829 252 41 734 2526 50424691 50426482 0.000000e+00 1509.0
5 TraesCS3B01G139900 chr3D 85.147 1360 176 15 1017 2371 80568977 80567639 0.000000e+00 1369.0
6 TraesCS3B01G139900 chr3D 84.857 1367 180 16 1010 2371 80262909 80264253 0.000000e+00 1352.0
7 TraesCS3B01G139900 chr3D 90.751 346 22 5 2833 3170 80476944 80476601 1.430000e-123 453.0
8 TraesCS3B01G139900 chr3D 83.333 168 9 2 2608 2756 80477103 80476936 1.640000e-28 137.0
9 TraesCS3B01G139900 chr3A 91.214 1969 98 27 678 2607 94183864 94181932 0.000000e+00 2608.0
10 TraesCS3B01G139900 chr3A 95.668 1108 43 3 1277 2384 94107021 94108123 0.000000e+00 1775.0
11 TraesCS3B01G139900 chr3A 85.872 1359 165 17 1019 2371 94187405 94186068 0.000000e+00 1421.0
12 TraesCS3B01G139900 chr3A 80.926 1835 248 51 693 2477 63485000 63486782 0.000000e+00 1356.0
13 TraesCS3B01G139900 chr3A 83.579 542 55 21 2864 3381 94177556 94177025 8.490000e-131 477.0
14 TraesCS3B01G139900 chr3A 87.730 326 32 7 604 922 94106696 94107020 1.150000e-99 374.0
15 TraesCS3B01G139900 chr3A 87.435 191 21 1 169 356 94184598 94184408 2.040000e-52 217.0
16 TraesCS3B01G139900 chr3A 87.500 184 23 0 1120 1303 94101599 94101782 2.640000e-51 213.0
17 TraesCS3B01G139900 chr3A 84.252 127 12 3 43 169 608406393 608406275 2.130000e-22 117.0
18 TraesCS3B01G139900 chr3A 88.043 92 11 0 2745 2836 33532480 33532389 3.570000e-20 110.0
19 TraesCS3B01G139900 chr3A 98.039 51 1 0 2610 2660 94181884 94181834 4.650000e-14 89.8
20 TraesCS3B01G139900 chr3A 93.220 59 4 0 412 470 94184396 94184338 1.670000e-13 87.9
21 TraesCS3B01G139900 chr3A 93.103 58 4 0 419 476 94106588 94106645 6.010000e-13 86.1
22 TraesCS3B01G139900 chr7B 72.510 1295 286 44 1075 2343 703995673 703996923 4.150000e-94 355.0
23 TraesCS3B01G139900 chr7B 88.889 90 9 1 2752 2840 621709389 621709478 3.570000e-20 110.0
24 TraesCS3B01G139900 chr2A 94.937 79 4 0 2763 2841 776909978 776910056 1.270000e-24 124.0
25 TraesCS3B01G139900 chr7A 90.000 90 9 0 2751 2840 501073964 501073875 2.130000e-22 117.0
26 TraesCS3B01G139900 chr6D 92.405 79 6 0 2758 2836 456831007 456830929 2.760000e-21 113.0
27 TraesCS3B01G139900 chr6B 92.500 80 4 2 2758 2836 152084095 152084017 2.760000e-21 113.0
28 TraesCS3B01G139900 chr5B 88.889 90 9 1 2752 2840 516406341 516406430 3.570000e-20 110.0
29 TraesCS3B01G139900 chr4B 90.476 84 7 1 2758 2840 137482872 137482789 3.570000e-20 110.0
30 TraesCS3B01G139900 chr2B 90.476 84 7 1 2758 2840 243188368 243188285 3.570000e-20 110.0
31 TraesCS3B01G139900 chr1B 90.909 66 6 0 528 593 645321332 645321397 4.650000e-14 89.8
32 TraesCS3B01G139900 chr1B 89.552 67 6 1 528 593 645315326 645315392 2.160000e-12 84.2
33 TraesCS3B01G139900 chr2D 87.671 73 6 3 523 593 645935160 645935089 7.780000e-12 82.4
34 TraesCS3B01G139900 chr1A 93.023 43 2 1 3095 3136 285956145 285956103 1.010000e-05 62.1
35 TraesCS3B01G139900 chr1A 90.698 43 2 2 3102 3143 507552245 507552204 4.720000e-04 56.5
36 TraesCS3B01G139900 chr7D 96.970 33 1 0 526 558 63651552 63651520 4.720000e-04 56.5
37 TraesCS3B01G139900 chrUn 100.000 28 0 0 3102 3129 50601567 50601540 6.000000e-03 52.8
38 TraesCS3B01G139900 chr5A 96.774 31 1 0 3102 3132 83273147 83273177 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G139900 chr3B 126300479 126303861 3382 True 6248.000000 6248 100.000000 1 3383 1 chr3B.!!$R1 3382
1 TraesCS3B01G139900 chr3B 126309398 126310735 1337 True 1432.000000 1432 86.029000 1019 2371 1 chr3B.!!$R2 1352
2 TraesCS3B01G139900 chr3B 79978807 79980488 1681 False 1423.000000 1423 82.384000 714 2390 1 chr3B.!!$F1 1676
3 TraesCS3B01G139900 chr3D 50424691 50426482 1791 False 1509.000000 1509 82.231000 734 2526 1 chr3D.!!$F1 1792
4 TraesCS3B01G139900 chr3D 80567639 80568977 1338 True 1369.000000 1369 85.147000 1017 2371 1 chr3D.!!$R1 1354
5 TraesCS3B01G139900 chr3D 80262909 80264253 1344 False 1352.000000 1352 84.857000 1010 2371 1 chr3D.!!$F2 1361
6 TraesCS3B01G139900 chr3D 80476601 80479093 2492 True 1112.666667 2748 88.807667 674 3170 3 chr3D.!!$R2 2496
7 TraesCS3B01G139900 chr3A 63485000 63486782 1782 False 1356.000000 1356 80.926000 693 2477 1 chr3A.!!$F1 1784
8 TraesCS3B01G139900 chr3A 94181834 94187405 5571 True 884.740000 2608 91.156000 169 2660 5 chr3A.!!$R4 2491
9 TraesCS3B01G139900 chr3A 94106588 94108123 1535 False 745.033333 1775 92.167000 419 2384 3 chr3A.!!$F3 1965
10 TraesCS3B01G139900 chr3A 94177025 94177556 531 True 477.000000 477 83.579000 2864 3381 1 chr3A.!!$R2 517
11 TraesCS3B01G139900 chr7B 703995673 703996923 1250 False 355.000000 355 72.510000 1075 2343 1 chr7B.!!$F2 1268

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 3008 0.107456 GGCCATCACCTCATCGATGT 59.893 55.0 24.09 3.08 37.84 3.06 F
932 3961 0.693622 TACCACATTCGCCTCCCAAA 59.306 50.0 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2256 5358 0.381801 GCGCAATGTTCCCGATGATT 59.618 50.0 0.30 0.0 0.0 2.57 R
2703 5882 0.040870 CTCCATCTCGACGTGGATCG 60.041 60.0 12.97 0.0 43.2 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.753674 ATAATTTCCAGAAATCTTGTACCAAGA 57.246 29.630 8.95 8.95 39.88 3.02
31 32 8.477419 AATTTCCAGAAATCTTGTACCAAGAA 57.523 30.769 10.42 0.00 39.88 2.52
33 34 6.433847 TCCAGAAATCTTGTACCAAGAAGA 57.566 37.500 10.42 4.33 39.16 2.87
34 35 7.020827 TCCAGAAATCTTGTACCAAGAAGAT 57.979 36.000 10.42 6.21 45.12 2.40
35 36 8.146053 TCCAGAAATCTTGTACCAAGAAGATA 57.854 34.615 10.42 0.00 43.07 1.98
37 38 8.260818 CCAGAAATCTTGTACCAAGAAGATAGA 58.739 37.037 10.42 0.00 43.07 1.98
38 39 9.829507 CAGAAATCTTGTACCAAGAAGATAGAT 57.170 33.333 10.42 0.00 43.07 1.98
48 49 8.983724 GTACCAAGAAGATAGATAATTCTGTGC 58.016 37.037 0.00 0.00 33.67 4.57
49 50 6.995091 ACCAAGAAGATAGATAATTCTGTGCC 59.005 38.462 0.00 0.00 33.67 5.01
50 51 6.146837 CCAAGAAGATAGATAATTCTGTGCCG 59.853 42.308 0.00 0.00 33.67 5.69
51 52 5.233988 AGAAGATAGATAATTCTGTGCCGC 58.766 41.667 0.00 0.00 32.19 6.53
52 53 3.931578 AGATAGATAATTCTGTGCCGCC 58.068 45.455 0.00 0.00 33.17 6.13
53 54 2.148916 TAGATAATTCTGTGCCGCCG 57.851 50.000 0.00 0.00 33.17 6.46
54 55 0.178068 AGATAATTCTGTGCCGCCGT 59.822 50.000 0.00 0.00 0.00 5.68
56 57 1.095228 ATAATTCTGTGCCGCCGTGG 61.095 55.000 0.00 0.00 42.50 4.94
57 58 2.457743 TAATTCTGTGCCGCCGTGGT 62.458 55.000 0.00 0.00 41.21 4.16
60 61 4.673298 CTGTGCCGCCGTGGTGTA 62.673 66.667 0.00 0.00 41.21 2.90
61 62 4.237207 TGTGCCGCCGTGGTGTAA 62.237 61.111 0.00 0.00 41.21 2.41
65 66 4.690719 CCGCCGTGGTGTAAGCCA 62.691 66.667 0.00 0.00 35.93 4.75
66 67 3.118454 CGCCGTGGTGTAAGCCAG 61.118 66.667 0.00 0.00 39.53 4.85
67 68 2.345991 GCCGTGGTGTAAGCCAGA 59.654 61.111 0.00 0.00 39.53 3.86
68 69 1.302192 GCCGTGGTGTAAGCCAGAA 60.302 57.895 0.00 0.00 39.53 3.02
69 70 1.574702 GCCGTGGTGTAAGCCAGAAC 61.575 60.000 0.00 0.00 39.53 3.01
70 71 0.953960 CCGTGGTGTAAGCCAGAACC 60.954 60.000 0.00 0.00 39.53 3.62
71 72 0.250124 CGTGGTGTAAGCCAGAACCA 60.250 55.000 0.00 0.00 39.53 3.67
72 73 1.812324 CGTGGTGTAAGCCAGAACCAA 60.812 52.381 0.88 0.00 44.02 3.67
91 92 6.469782 ACCAAAGTTCATCAAGTTGAATGT 57.530 33.333 10.14 0.00 37.88 2.71
92 93 7.581213 ACCAAAGTTCATCAAGTTGAATGTA 57.419 32.000 10.14 0.75 37.88 2.29
93 94 7.651808 ACCAAAGTTCATCAAGTTGAATGTAG 58.348 34.615 10.14 0.00 37.88 2.74
94 95 7.502226 ACCAAAGTTCATCAAGTTGAATGTAGA 59.498 33.333 10.14 0.90 37.88 2.59
95 96 8.517878 CCAAAGTTCATCAAGTTGAATGTAGAT 58.482 33.333 10.14 0.00 37.88 1.98
96 97 9.338291 CAAAGTTCATCAAGTTGAATGTAGATG 57.662 33.333 10.14 1.82 37.88 2.90
97 98 7.081526 AGTTCATCAAGTTGAATGTAGATGC 57.918 36.000 10.14 1.23 37.88 3.91
100 101 4.926860 TCAAGTTGAATGTAGATGCGTG 57.073 40.909 2.20 0.00 0.00 5.34
101 102 4.565022 TCAAGTTGAATGTAGATGCGTGA 58.435 39.130 2.20 0.00 0.00 4.35
102 103 5.178061 TCAAGTTGAATGTAGATGCGTGAT 58.822 37.500 2.20 0.00 0.00 3.06
103 104 5.063817 TCAAGTTGAATGTAGATGCGTGATG 59.936 40.000 2.20 0.00 0.00 3.07
104 105 3.310774 AGTTGAATGTAGATGCGTGATGC 59.689 43.478 0.00 0.00 46.70 3.91
119 120 3.767902 TGATGCATCACATTATCCCGA 57.232 42.857 25.42 0.00 39.84 5.14
120 121 4.290711 TGATGCATCACATTATCCCGAT 57.709 40.909 25.42 0.00 39.84 4.18
121 122 4.004982 TGATGCATCACATTATCCCGATG 58.995 43.478 25.42 0.00 39.84 3.84
122 123 3.767902 TGCATCACATTATCCCGATGA 57.232 42.857 0.00 0.00 37.97 2.92
123 124 3.667360 TGCATCACATTATCCCGATGAG 58.333 45.455 0.00 0.00 37.97 2.90
124 125 3.005554 GCATCACATTATCCCGATGAGG 58.994 50.000 0.00 0.00 37.97 3.86
133 134 4.598894 CCGATGAGGGCGCTGGAG 62.599 72.222 8.56 0.00 35.97 3.86
135 136 4.166888 GATGAGGGCGCTGGAGCA 62.167 66.667 8.56 0.00 42.21 4.26
156 157 3.911661 GCTGTTGCTGTTTTGAGAGAT 57.088 42.857 0.00 0.00 36.03 2.75
158 159 3.251729 GCTGTTGCTGTTTTGAGAGATGA 59.748 43.478 0.00 0.00 36.03 2.92
159 160 4.261322 GCTGTTGCTGTTTTGAGAGATGAA 60.261 41.667 0.00 0.00 36.03 2.57
160 161 5.734220 GCTGTTGCTGTTTTGAGAGATGAAA 60.734 40.000 0.00 0.00 36.03 2.69
161 162 6.206395 TGTTGCTGTTTTGAGAGATGAAAA 57.794 33.333 0.00 0.00 0.00 2.29
163 164 6.753279 TGTTGCTGTTTTGAGAGATGAAAAAG 59.247 34.615 0.00 0.00 0.00 2.27
165 166 5.593909 TGCTGTTTTGAGAGATGAAAAAGGA 59.406 36.000 0.00 0.00 0.00 3.36
166 167 6.266103 TGCTGTTTTGAGAGATGAAAAAGGAT 59.734 34.615 0.00 0.00 0.00 3.24
167 168 6.805760 GCTGTTTTGAGAGATGAAAAAGGATC 59.194 38.462 0.00 0.00 0.00 3.36
168 169 7.309073 GCTGTTTTGAGAGATGAAAAAGGATCT 60.309 37.037 0.00 0.00 0.00 2.75
169 170 9.224267 CTGTTTTGAGAGATGAAAAAGGATCTA 57.776 33.333 0.00 0.00 0.00 1.98
170 171 9.224267 TGTTTTGAGAGATGAAAAAGGATCTAG 57.776 33.333 0.00 0.00 0.00 2.43
171 172 9.442047 GTTTTGAGAGATGAAAAAGGATCTAGA 57.558 33.333 0.00 0.00 0.00 2.43
175 176 8.420222 TGAGAGATGAAAAAGGATCTAGATGTC 58.580 37.037 10.74 2.22 0.00 3.06
183 2823 4.414337 AGGATCTAGATGTCCAAGTTGC 57.586 45.455 10.74 0.00 36.96 4.17
189 2829 1.228245 ATGTCCAAGTTGCCGCACT 60.228 52.632 0.00 0.00 0.00 4.40
220 2863 4.886579 ACCAATTGCTCTCATTGGAAAAC 58.113 39.130 16.78 0.00 45.69 2.43
223 2866 3.624326 TTGCTCTCATTGGAAAACACG 57.376 42.857 0.00 0.00 0.00 4.49
227 2870 2.489329 CTCTCATTGGAAAACACGCCAT 59.511 45.455 0.00 0.00 33.46 4.40
231 2874 4.269183 TCATTGGAAAACACGCCATCTAT 58.731 39.130 0.00 0.00 33.46 1.98
238 2881 5.066505 GGAAAACACGCCATCTATTGAGATT 59.933 40.000 0.00 0.00 40.68 2.40
253 2896 5.745312 TTGAGATTAGAAGAGAGCCAACA 57.255 39.130 0.00 0.00 0.00 3.33
299 2942 1.153289 CCTTCACCAGAGCCGGATG 60.153 63.158 5.05 0.00 0.00 3.51
304 2947 1.305297 ACCAGAGCCGGATGAGACA 60.305 57.895 5.05 0.00 0.00 3.41
316 2959 3.707793 GGATGAGACATCGTTGAGGTAC 58.292 50.000 0.00 0.00 0.00 3.34
335 2978 7.123098 TGAGGTACGAAATATCTTAGTCCAACA 59.877 37.037 0.00 0.00 0.00 3.33
345 2988 0.455464 TAGTCCAACACGTCATCGCG 60.455 55.000 0.00 0.00 41.18 5.87
346 2989 2.431771 TCCAACACGTCATCGCGG 60.432 61.111 6.13 0.00 41.18 6.46
356 2999 4.552365 CATCGCGGGCCATCACCT 62.552 66.667 6.13 0.00 0.00 4.00
357 3000 4.241555 ATCGCGGGCCATCACCTC 62.242 66.667 6.13 0.00 0.00 3.85
359 3002 4.552365 CGCGGGCCATCACCTCAT 62.552 66.667 4.39 0.00 0.00 2.90
360 3003 2.592861 GCGGGCCATCACCTCATC 60.593 66.667 4.39 0.00 0.00 2.92
362 3005 2.796193 CGGGCCATCACCTCATCGA 61.796 63.158 4.39 0.00 0.00 3.59
363 3006 1.757306 GGGCCATCACCTCATCGAT 59.243 57.895 4.39 0.00 0.00 3.59
364 3007 0.604780 GGGCCATCACCTCATCGATG 60.605 60.000 19.61 19.61 39.00 3.84
365 3008 0.107456 GGCCATCACCTCATCGATGT 59.893 55.000 24.09 3.08 37.84 3.06
366 3009 1.506493 GCCATCACCTCATCGATGTC 58.494 55.000 24.09 1.56 37.84 3.06
367 3010 1.202568 GCCATCACCTCATCGATGTCA 60.203 52.381 24.09 5.96 37.84 3.58
368 3011 2.549563 GCCATCACCTCATCGATGTCAT 60.550 50.000 24.09 8.55 37.84 3.06
369 3012 3.736720 CCATCACCTCATCGATGTCATT 58.263 45.455 24.09 5.62 37.84 2.57
370 3013 3.497262 CCATCACCTCATCGATGTCATTG 59.503 47.826 24.09 16.30 37.84 2.82
371 3014 3.183793 TCACCTCATCGATGTCATTGG 57.816 47.619 24.09 19.29 0.00 3.16
372 3015 2.765699 TCACCTCATCGATGTCATTGGA 59.234 45.455 24.09 12.73 0.00 3.53
373 3016 3.129109 CACCTCATCGATGTCATTGGAG 58.871 50.000 24.09 12.38 0.00 3.86
374 3017 3.033909 ACCTCATCGATGTCATTGGAGA 58.966 45.455 24.09 1.50 0.00 3.71
375 3018 3.452264 ACCTCATCGATGTCATTGGAGAA 59.548 43.478 24.09 0.76 0.00 2.87
376 3019 4.080919 ACCTCATCGATGTCATTGGAGAAA 60.081 41.667 24.09 0.24 0.00 2.52
377 3020 4.272018 CCTCATCGATGTCATTGGAGAAAC 59.728 45.833 24.09 0.00 0.00 2.78
378 3021 4.831107 TCATCGATGTCATTGGAGAAACA 58.169 39.130 24.09 0.00 0.00 2.83
379 3022 5.244755 TCATCGATGTCATTGGAGAAACAA 58.755 37.500 24.09 0.00 34.41 2.83
380 3023 5.704978 TCATCGATGTCATTGGAGAAACAAA 59.295 36.000 24.09 0.00 33.48 2.83
381 3024 6.206438 TCATCGATGTCATTGGAGAAACAAAA 59.794 34.615 24.09 0.00 33.48 2.44
382 3025 5.757886 TCGATGTCATTGGAGAAACAAAAC 58.242 37.500 0.00 0.00 33.48 2.43
383 3026 4.917415 CGATGTCATTGGAGAAACAAAACC 59.083 41.667 0.00 0.00 33.48 3.27
384 3027 4.664150 TGTCATTGGAGAAACAAAACCC 57.336 40.909 0.00 0.00 33.48 4.11
385 3028 4.285863 TGTCATTGGAGAAACAAAACCCT 58.714 39.130 0.00 0.00 33.48 4.34
386 3029 4.099266 TGTCATTGGAGAAACAAAACCCTG 59.901 41.667 0.00 0.00 33.48 4.45
387 3030 4.340950 GTCATTGGAGAAACAAAACCCTGA 59.659 41.667 0.00 0.00 33.48 3.86
388 3031 4.584325 TCATTGGAGAAACAAAACCCTGAG 59.416 41.667 0.00 0.00 33.48 3.35
389 3032 2.944129 TGGAGAAACAAAACCCTGAGG 58.056 47.619 0.00 0.00 40.04 3.86
390 3033 5.240780 ATTGGAGAAACAAAACCCTGAGGG 61.241 45.833 17.95 17.95 40.48 4.30
426 3069 3.133464 ATGTGTTGATGCGGCGGG 61.133 61.111 9.78 0.00 0.00 6.13
462 3105 4.126437 GCACAACAAGGTTTTATTTGGCT 58.874 39.130 0.00 0.00 0.00 4.75
463 3106 5.163405 TGCACAACAAGGTTTTATTTGGCTA 60.163 36.000 0.00 0.00 0.00 3.93
491 3465 2.531206 GATACTGACCGTGAGCACTTC 58.469 52.381 0.00 0.00 0.00 3.01
497 3471 1.367471 CCGTGAGCACTTCTGGACA 59.633 57.895 0.00 0.00 0.00 4.02
500 3474 1.067283 CGTGAGCACTTCTGGACAGAT 60.067 52.381 2.42 0.00 37.29 2.90
504 3478 5.181748 GTGAGCACTTCTGGACAGATTAAT 58.818 41.667 2.42 0.00 37.29 1.40
505 3479 6.341316 GTGAGCACTTCTGGACAGATTAATA 58.659 40.000 2.42 0.00 37.29 0.98
506 3480 6.478344 GTGAGCACTTCTGGACAGATTAATAG 59.522 42.308 2.42 0.00 37.29 1.73
507 3481 5.923204 AGCACTTCTGGACAGATTAATAGG 58.077 41.667 2.42 0.00 37.29 2.57
508 3482 5.663106 AGCACTTCTGGACAGATTAATAGGA 59.337 40.000 2.42 0.00 37.29 2.94
509 3483 6.156949 AGCACTTCTGGACAGATTAATAGGAA 59.843 38.462 2.42 0.00 37.29 3.36
510 3484 6.823689 GCACTTCTGGACAGATTAATAGGAAA 59.176 38.462 2.42 0.00 37.29 3.13
511 3485 7.500559 GCACTTCTGGACAGATTAATAGGAAAT 59.499 37.037 2.42 0.00 37.29 2.17
512 3486 9.401058 CACTTCTGGACAGATTAATAGGAAATT 57.599 33.333 2.42 0.00 37.29 1.82
513 3487 9.981460 ACTTCTGGACAGATTAATAGGAAATTT 57.019 29.630 2.42 0.00 37.29 1.82
545 3519 3.004024 GGAATAAATGCGAGCACCATG 57.996 47.619 0.00 0.00 0.00 3.66
546 3520 2.618241 GGAATAAATGCGAGCACCATGA 59.382 45.455 0.00 0.00 0.00 3.07
547 3521 3.548818 GGAATAAATGCGAGCACCATGAC 60.549 47.826 0.00 0.00 0.00 3.06
548 3522 2.401583 TAAATGCGAGCACCATGACT 57.598 45.000 0.00 0.00 0.00 3.41
549 3523 1.538047 AAATGCGAGCACCATGACTT 58.462 45.000 0.00 0.00 0.00 3.01
550 3524 2.401583 AATGCGAGCACCATGACTTA 57.598 45.000 0.00 0.00 0.00 2.24
551 3525 2.401583 ATGCGAGCACCATGACTTAA 57.598 45.000 0.00 0.00 0.00 1.85
552 3526 2.177394 TGCGAGCACCATGACTTAAA 57.823 45.000 0.00 0.00 0.00 1.52
553 3527 2.710377 TGCGAGCACCATGACTTAAAT 58.290 42.857 0.00 0.00 0.00 1.40
554 3528 2.677836 TGCGAGCACCATGACTTAAATC 59.322 45.455 0.00 0.00 0.00 2.17
555 3529 2.032178 GCGAGCACCATGACTTAAATCC 59.968 50.000 0.00 0.00 0.00 3.01
556 3530 3.535561 CGAGCACCATGACTTAAATCCT 58.464 45.455 0.00 0.00 0.00 3.24
557 3531 3.310774 CGAGCACCATGACTTAAATCCTG 59.689 47.826 0.00 0.00 0.00 3.86
558 3532 4.517285 GAGCACCATGACTTAAATCCTGA 58.483 43.478 0.00 0.00 0.00 3.86
559 3533 5.121380 AGCACCATGACTTAAATCCTGAT 57.879 39.130 0.00 0.00 0.00 2.90
560 3534 4.885907 AGCACCATGACTTAAATCCTGATG 59.114 41.667 0.00 0.00 0.00 3.07
561 3535 4.037208 GCACCATGACTTAAATCCTGATGG 59.963 45.833 0.00 0.00 35.90 3.51
562 3536 4.581824 CACCATGACTTAAATCCTGATGGG 59.418 45.833 6.68 0.00 34.39 4.00
563 3537 3.571401 CCATGACTTAAATCCTGATGGGC 59.429 47.826 0.00 0.00 34.39 5.36
564 3538 4.467769 CATGACTTAAATCCTGATGGGCT 58.532 43.478 0.00 0.00 34.39 5.19
565 3539 3.889815 TGACTTAAATCCTGATGGGCTG 58.110 45.455 0.00 0.00 34.39 4.85
566 3540 3.217626 GACTTAAATCCTGATGGGCTGG 58.782 50.000 0.00 0.00 36.97 4.85
567 3541 2.091665 ACTTAAATCCTGATGGGCTGGG 60.092 50.000 0.00 0.00 36.34 4.45
568 3542 1.905839 TAAATCCTGATGGGCTGGGA 58.094 50.000 0.00 0.00 36.34 4.37
569 3543 1.238615 AAATCCTGATGGGCTGGGAT 58.761 50.000 0.00 0.00 39.91 3.85
570 3544 2.138535 AATCCTGATGGGCTGGGATA 57.861 50.000 0.00 0.00 37.57 2.59
571 3545 1.366319 ATCCTGATGGGCTGGGATAC 58.634 55.000 0.00 0.00 36.88 2.24
588 3562 5.304686 GGATACCACAATCCATCTAACCA 57.695 43.478 0.00 0.00 44.26 3.67
589 3563 5.880901 GGATACCACAATCCATCTAACCAT 58.119 41.667 0.00 0.00 44.26 3.55
590 3564 5.940470 GGATACCACAATCCATCTAACCATC 59.060 44.000 0.00 0.00 44.26 3.51
591 3565 4.170468 ACCACAATCCATCTAACCATCC 57.830 45.455 0.00 0.00 0.00 3.51
592 3566 3.527253 ACCACAATCCATCTAACCATCCA 59.473 43.478 0.00 0.00 0.00 3.41
593 3567 4.168675 ACCACAATCCATCTAACCATCCAT 59.831 41.667 0.00 0.00 0.00 3.41
594 3568 4.521639 CCACAATCCATCTAACCATCCATG 59.478 45.833 0.00 0.00 0.00 3.66
636 3610 7.451731 TGAATTATTAGATGAGGTTGGAGGT 57.548 36.000 0.00 0.00 0.00 3.85
657 3631 3.068165 GTGAAAGTGGGGAGAACAAAAGG 59.932 47.826 0.00 0.00 0.00 3.11
661 3635 3.989056 AGTGGGGAGAACAAAAGGAAAA 58.011 40.909 0.00 0.00 0.00 2.29
663 3637 4.161565 AGTGGGGAGAACAAAAGGAAAAAC 59.838 41.667 0.00 0.00 0.00 2.43
666 3640 4.499188 GGGGAGAACAAAAGGAAAAACGAG 60.499 45.833 0.00 0.00 0.00 4.18
667 3641 4.337274 GGGAGAACAAAAGGAAAAACGAGA 59.663 41.667 0.00 0.00 0.00 4.04
668 3642 5.163591 GGGAGAACAAAAGGAAAAACGAGAA 60.164 40.000 0.00 0.00 0.00 2.87
669 3643 6.327154 GGAGAACAAAAGGAAAAACGAGAAA 58.673 36.000 0.00 0.00 0.00 2.52
671 3645 7.329962 GGAGAACAAAAGGAAAAACGAGAAAAA 59.670 33.333 0.00 0.00 0.00 1.94
691 3699 6.481051 AAAAATTCGTTCGTTTAACCGTTC 57.519 33.333 0.00 0.00 34.33 3.95
758 3769 2.822707 AGAATCAATCAGCTGCCCTT 57.177 45.000 9.47 0.00 0.00 3.95
856 3881 5.335113 CGCCTTCAAAATCACAAATCTCTCA 60.335 40.000 0.00 0.00 0.00 3.27
902 3931 3.885297 CGGGAAATCAGCAATTCATACCT 59.115 43.478 0.00 0.00 0.00 3.08
912 3941 6.929049 TCAGCAATTCATACCTAATCCTTACG 59.071 38.462 0.00 0.00 0.00 3.18
930 3959 1.600107 GTACCACATTCGCCTCCCA 59.400 57.895 0.00 0.00 0.00 4.37
932 3961 0.693622 TACCACATTCGCCTCCCAAA 59.306 50.000 0.00 0.00 0.00 3.28
992 4028 2.499205 CGATCGGCAGGGCTAACA 59.501 61.111 7.38 0.00 0.00 2.41
993 4029 1.883084 CGATCGGCAGGGCTAACAC 60.883 63.158 7.38 0.00 0.00 3.32
2271 5373 1.750778 GTGGCAATCATCGGGAACATT 59.249 47.619 0.00 0.00 0.00 2.71
2386 5488 3.119459 CGCCTCTGTCTCTTTGTAGCTAA 60.119 47.826 0.00 0.00 0.00 3.09
2390 5492 6.183360 GCCTCTGTCTCTTTGTAGCTAACTAT 60.183 42.308 0.00 0.00 0.00 2.12
2391 5493 7.199766 CCTCTGTCTCTTTGTAGCTAACTATG 58.800 42.308 0.00 0.00 0.00 2.23
2469 5574 0.104120 AGAAACAAAAACCCCAGCGC 59.896 50.000 0.00 0.00 0.00 5.92
2471 5576 0.104120 AAACAAAAACCCCAGCGCTC 59.896 50.000 7.13 0.00 0.00 5.03
2496 5601 6.725364 TCAGCCTCCTTTCTAATTTCATCTT 58.275 36.000 0.00 0.00 0.00 2.40
2505 5610 7.547370 CCTTTCTAATTTCATCTTCACGTCTCT 59.453 37.037 0.00 0.00 0.00 3.10
2529 5635 8.160765 TCTGTTTGTTTCAGGTTTGGATATCTA 58.839 33.333 2.05 0.00 34.15 1.98
2531 5637 9.967451 TGTTTGTTTCAGGTTTGGATATCTATA 57.033 29.630 2.05 0.00 0.00 1.31
2591 5708 5.856126 ACGTCATGATTGTCACGTAATTT 57.144 34.783 6.25 0.00 43.42 1.82
2601 5718 9.484326 TGATTGTCACGTAATTTTAAATCGATG 57.516 29.630 0.00 0.00 0.00 3.84
2678 5857 5.084818 TCATGAAACAAAGAGCCTCGATA 57.915 39.130 0.00 0.00 0.00 2.92
2685 5864 3.181489 ACAAAGAGCCTCGATAAGTACCG 60.181 47.826 0.00 0.00 0.00 4.02
2688 5867 3.813443 AGAGCCTCGATAAGTACCGTAA 58.187 45.455 0.00 0.00 0.00 3.18
2703 5882 4.823790 ACCGTAACAATTTGAGTTGGTC 57.176 40.909 2.79 0.00 33.40 4.02
2725 5904 0.809385 TCCACGTCGAGATGGAGTTC 59.191 55.000 12.58 0.00 40.17 3.01
2743 5922 6.378564 TGGAGTTCTCTTATCTTGTCCTACAG 59.621 42.308 0.00 0.00 0.00 2.74
2757 5936 7.667043 TTGTCCTACAGTGACAAATATTCAC 57.333 36.000 0.00 0.00 46.58 3.18
2765 5944 5.757850 GTGACAAATATTCACTCCATCCC 57.242 43.478 0.00 0.00 40.30 3.85
2766 5945 5.192927 GTGACAAATATTCACTCCATCCCA 58.807 41.667 0.00 0.00 40.30 4.37
2767 5946 5.829924 GTGACAAATATTCACTCCATCCCAT 59.170 40.000 0.00 0.00 40.30 4.00
2768 5947 6.998074 GTGACAAATATTCACTCCATCCCATA 59.002 38.462 0.00 0.00 40.30 2.74
2769 5948 7.502226 GTGACAAATATTCACTCCATCCCATAA 59.498 37.037 0.00 0.00 40.30 1.90
2770 5949 8.226810 TGACAAATATTCACTCCATCCCATAAT 58.773 33.333 0.00 0.00 0.00 1.28
2771 5950 9.739276 GACAAATATTCACTCCATCCCATAATA 57.261 33.333 0.00 0.00 0.00 0.98
2779 5958 9.964354 TTCACTCCATCCCATAATATAAGAATG 57.036 33.333 0.00 0.00 0.00 2.67
2780 5959 9.116080 TCACTCCATCCCATAATATAAGAATGT 57.884 33.333 0.00 0.00 0.00 2.71
2781 5960 9.745018 CACTCCATCCCATAATATAAGAATGTT 57.255 33.333 0.00 0.00 0.00 2.71
2822 6001 8.832521 AGTGTCAAAAACGTTCTTATATTGTGA 58.167 29.630 0.00 0.00 0.00 3.58
2823 6002 9.103048 GTGTCAAAAACGTTCTTATATTGTGAG 57.897 33.333 0.00 0.00 0.00 3.51
2824 6003 9.047371 TGTCAAAAACGTTCTTATATTGTGAGA 57.953 29.630 0.00 0.00 0.00 3.27
2825 6004 9.314501 GTCAAAAACGTTCTTATATTGTGAGAC 57.685 33.333 0.00 0.00 0.00 3.36
2826 6005 8.218441 TCAAAAACGTTCTTATATTGTGAGACG 58.782 33.333 0.00 0.00 0.00 4.18
2827 6006 6.642683 AAACGTTCTTATATTGTGAGACGG 57.357 37.500 0.00 0.00 0.00 4.79
2828 6007 5.571784 ACGTTCTTATATTGTGAGACGGA 57.428 39.130 0.00 0.00 0.00 4.69
2829 6008 5.579718 ACGTTCTTATATTGTGAGACGGAG 58.420 41.667 0.00 0.00 0.00 4.63
2830 6009 4.976731 CGTTCTTATATTGTGAGACGGAGG 59.023 45.833 0.00 0.00 0.00 4.30
2831 6010 5.290386 GTTCTTATATTGTGAGACGGAGGG 58.710 45.833 0.00 0.00 0.00 4.30
2874 6053 4.568359 ACGTGAGATAGAAACATCACATGC 59.432 41.667 0.00 0.00 41.67 4.06
2906 6085 2.679082 ACGAGTATGGCTCATTACCCT 58.321 47.619 0.00 0.00 44.33 4.34
2934 6119 9.579610 CCGTTTCAATTGATAAAACAAACATTC 57.420 29.630 17.39 0.00 33.51 2.67
3010 6197 1.196808 ACATTCGTCGCCAACAACATC 59.803 47.619 0.00 0.00 0.00 3.06
3060 6247 6.378280 ACCTCTGACAATGTCTTCTTTTGTTT 59.622 34.615 14.97 0.00 33.15 2.83
3062 6249 7.389803 TCTGACAATGTCTTCTTTTGTTTCA 57.610 32.000 14.97 0.00 33.15 2.69
3063 6250 7.825681 TCTGACAATGTCTTCTTTTGTTTCAA 58.174 30.769 14.97 0.00 33.15 2.69
3143 6332 8.770850 AAAAATTGCATCAAAATTTCAAGACG 57.229 26.923 0.00 0.00 36.46 4.18
3146 6335 3.982701 TGCATCAAAATTTCAAGACGCTG 59.017 39.130 7.48 0.00 0.00 5.18
3174 6363 1.095807 GGCAACCATCCGGACTAAGC 61.096 60.000 6.12 7.82 35.59 3.09
3175 6364 0.392461 GCAACCATCCGGACTAAGCA 60.392 55.000 6.12 0.00 35.59 3.91
3176 6365 1.948611 GCAACCATCCGGACTAAGCAA 60.949 52.381 6.12 0.00 35.59 3.91
3177 6366 1.737793 CAACCATCCGGACTAAGCAAC 59.262 52.381 6.12 0.00 35.59 4.17
3179 6368 0.463833 CCATCCGGACTAAGCAACCC 60.464 60.000 6.12 0.00 0.00 4.11
3185 6374 1.291272 GACTAAGCAACCCGGACGT 59.709 57.895 0.73 0.00 0.00 4.34
3186 6375 1.005394 ACTAAGCAACCCGGACGTG 60.005 57.895 0.73 0.00 0.00 4.49
3188 6377 1.005867 TAAGCAACCCGGACGTGTC 60.006 57.895 0.73 0.00 0.00 3.67
3189 6378 1.746322 TAAGCAACCCGGACGTGTCA 61.746 55.000 0.73 0.00 0.00 3.58
3190 6379 2.589442 GCAACCCGGACGTGTCAA 60.589 61.111 0.73 0.00 0.00 3.18
3191 6380 2.888998 GCAACCCGGACGTGTCAAC 61.889 63.158 0.73 0.00 0.00 3.18
3192 6381 1.521906 CAACCCGGACGTGTCAACA 60.522 57.895 0.73 0.00 0.00 3.33
3193 6382 1.522130 AACCCGGACGTGTCAACAC 60.522 57.895 0.73 3.13 43.15 3.32
3225 6420 4.047059 GCCCGTTGACTCGTCCGA 62.047 66.667 0.00 0.00 0.00 4.55
3237 6432 1.450905 CTCGTCCGACTGTTCGTTTTC 59.549 52.381 0.00 0.00 44.28 2.29
3238 6433 1.066002 TCGTCCGACTGTTCGTTTTCT 59.934 47.619 0.00 0.00 44.28 2.52
3239 6434 1.189446 CGTCCGACTGTTCGTTTTCTG 59.811 52.381 0.00 0.00 44.28 3.02
3244 6439 2.599848 CGACTGTTCGTTTTCTGGCAAG 60.600 50.000 0.00 0.00 40.61 4.01
3263 6458 2.591915 CCGGAGGCAAACTAGGAGA 58.408 57.895 0.00 0.00 46.14 3.71
3266 6461 0.833949 GGAGGCAAACTAGGAGAGGG 59.166 60.000 0.00 0.00 0.00 4.30
3268 6463 0.621862 AGGCAAACTAGGAGAGGGGG 60.622 60.000 0.00 0.00 0.00 5.40
3269 6464 0.914902 GGCAAACTAGGAGAGGGGGT 60.915 60.000 0.00 0.00 0.00 4.95
3273 6468 2.196304 AACTAGGAGAGGGGGTGGGG 62.196 65.000 0.00 0.00 0.00 4.96
3308 6503 1.619332 AGGTTTTCGAGAGTCCAGACC 59.381 52.381 0.00 0.00 0.00 3.85
3309 6504 1.343465 GGTTTTCGAGAGTCCAGACCA 59.657 52.381 0.00 0.00 0.00 4.02
3311 6506 0.966920 TTTCGAGAGTCCAGACCACC 59.033 55.000 0.00 0.00 0.00 4.61
3312 6507 0.178973 TTCGAGAGTCCAGACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
3316 6511 0.178891 AGAGTCCAGACCACCACCAT 60.179 55.000 0.00 0.00 0.00 3.55
3319 6514 0.321653 GTCCAGACCACCACCATGTC 60.322 60.000 0.00 0.00 0.00 3.06
3325 6520 1.072331 GACCACCACCATGTCTGACTT 59.928 52.381 9.51 0.00 0.00 3.01
3327 6522 1.881973 CCACCACCATGTCTGACTTTG 59.118 52.381 9.51 6.82 0.00 2.77
3334 6539 2.487086 CCATGTCTGACTTTGACACCCA 60.487 50.000 9.51 0.00 45.57 4.51
3344 6549 1.640593 TTGACACCCAGCCCACTCAA 61.641 55.000 0.00 0.00 0.00 3.02
3349 6554 1.142688 ACCCAGCCCACTCAAATCCT 61.143 55.000 0.00 0.00 0.00 3.24
3353 6558 2.556114 CCAGCCCACTCAAATCCTCTTT 60.556 50.000 0.00 0.00 0.00 2.52
3356 6561 2.876079 GCCCACTCAAATCCTCTTTCGT 60.876 50.000 0.00 0.00 0.00 3.85
3361 6566 6.109359 CCACTCAAATCCTCTTTCGTTCTAT 58.891 40.000 0.00 0.00 0.00 1.98
3367 6572 7.120726 TCAAATCCTCTTTCGTTCTATTTTCCC 59.879 37.037 0.00 0.00 0.00 3.97
3381 6586 1.847798 TTTCCCCCACTCCATCACCG 61.848 60.000 0.00 0.00 0.00 4.94
3382 6587 4.489771 CCCCCACTCCATCACCGC 62.490 72.222 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 8.983724 GCACAGAATTATCTATCTTCTTGGTAC 58.016 37.037 0.00 0.00 33.50 3.34
23 24 8.150945 GGCACAGAATTATCTATCTTCTTGGTA 58.849 37.037 0.00 0.00 33.50 3.25
24 25 6.995091 GGCACAGAATTATCTATCTTCTTGGT 59.005 38.462 0.00 0.00 33.50 3.67
25 26 6.146837 CGGCACAGAATTATCTATCTTCTTGG 59.853 42.308 0.00 0.00 33.50 3.61
26 27 6.347240 GCGGCACAGAATTATCTATCTTCTTG 60.347 42.308 0.00 0.00 33.50 3.02
27 28 5.698545 GCGGCACAGAATTATCTATCTTCTT 59.301 40.000 0.00 0.00 33.50 2.52
30 31 4.319177 GGCGGCACAGAATTATCTATCTT 58.681 43.478 3.07 0.00 33.50 2.40
31 32 3.615110 CGGCGGCACAGAATTATCTATCT 60.615 47.826 10.53 0.00 33.50 1.98
33 34 2.037251 ACGGCGGCACAGAATTATCTAT 59.963 45.455 13.24 0.00 33.50 1.98
34 35 1.411246 ACGGCGGCACAGAATTATCTA 59.589 47.619 13.24 0.00 33.50 1.98
35 36 0.178068 ACGGCGGCACAGAATTATCT 59.822 50.000 13.24 0.00 35.88 1.98
37 38 1.095228 CCACGGCGGCACAGAATTAT 61.095 55.000 13.24 0.00 0.00 1.28
38 39 1.743623 CCACGGCGGCACAGAATTA 60.744 57.895 13.24 0.00 0.00 1.40
39 40 3.055719 CCACGGCGGCACAGAATT 61.056 61.111 13.24 0.00 0.00 2.17
40 41 4.329545 ACCACGGCGGCACAGAAT 62.330 61.111 13.24 0.00 39.03 2.40
44 45 4.237207 TTACACCACGGCGGCACA 62.237 61.111 13.24 0.00 39.03 4.57
48 49 4.690719 TGGCTTACACCACGGCGG 62.691 66.667 13.24 0.00 42.50 6.13
49 50 3.118454 CTGGCTTACACCACGGCG 61.118 66.667 4.80 4.80 35.33 6.46
50 51 1.302192 TTCTGGCTTACACCACGGC 60.302 57.895 0.00 0.00 35.33 5.68
51 52 0.953960 GGTTCTGGCTTACACCACGG 60.954 60.000 0.00 0.00 35.33 4.94
52 53 0.250124 TGGTTCTGGCTTACACCACG 60.250 55.000 0.00 0.00 34.23 4.94
53 54 1.975660 TTGGTTCTGGCTTACACCAC 58.024 50.000 0.00 0.00 39.08 4.16
54 55 2.092103 ACTTTGGTTCTGGCTTACACCA 60.092 45.455 0.00 0.00 37.53 4.17
56 57 4.224715 GAACTTTGGTTCTGGCTTACAC 57.775 45.455 2.14 0.00 45.90 2.90
67 68 6.877236 ACATTCAACTTGATGAACTTTGGTT 58.123 32.000 0.00 0.00 41.78 3.67
68 69 6.469782 ACATTCAACTTGATGAACTTTGGT 57.530 33.333 0.00 0.00 41.78 3.67
69 70 7.874940 TCTACATTCAACTTGATGAACTTTGG 58.125 34.615 0.00 0.00 41.78 3.28
70 71 9.338291 CATCTACATTCAACTTGATGAACTTTG 57.662 33.333 0.00 0.00 41.78 2.77
71 72 8.025445 GCATCTACATTCAACTTGATGAACTTT 58.975 33.333 0.00 0.00 41.78 2.66
72 73 7.533426 GCATCTACATTCAACTTGATGAACTT 58.467 34.615 0.00 0.00 41.78 2.66
81 82 4.201851 GCATCACGCATCTACATTCAACTT 60.202 41.667 0.00 0.00 41.79 2.66
83 84 3.611517 GCATCACGCATCTACATTCAAC 58.388 45.455 0.00 0.00 41.79 3.18
84 85 3.950087 GCATCACGCATCTACATTCAA 57.050 42.857 0.00 0.00 41.79 2.69
100 101 4.256110 TCATCGGGATAATGTGATGCATC 58.744 43.478 20.14 20.14 38.43 3.91
101 102 4.259356 CTCATCGGGATAATGTGATGCAT 58.741 43.478 0.00 0.00 38.43 3.96
102 103 3.557686 CCTCATCGGGATAATGTGATGCA 60.558 47.826 0.00 0.00 38.43 3.96
103 104 3.005554 CCTCATCGGGATAATGTGATGC 58.994 50.000 0.00 0.00 38.43 3.91
116 117 4.598894 CTCCAGCGCCCTCATCGG 62.599 72.222 2.29 0.00 0.00 4.18
118 119 4.166888 TGCTCCAGCGCCCTCATC 62.167 66.667 2.29 0.00 45.83 2.92
119 120 4.172512 CTGCTCCAGCGCCCTCAT 62.173 66.667 2.29 0.00 45.83 2.90
135 136 2.923121 TCTCTCAAAACAGCAACAGCT 58.077 42.857 0.00 0.00 39.75 4.24
138 139 5.833406 TTTCATCTCTCAAAACAGCAACA 57.167 34.783 0.00 0.00 0.00 3.33
139 140 6.199719 CCTTTTTCATCTCTCAAAACAGCAAC 59.800 38.462 0.00 0.00 0.00 4.17
140 141 6.096705 TCCTTTTTCATCTCTCAAAACAGCAA 59.903 34.615 0.00 0.00 0.00 3.91
141 142 5.593909 TCCTTTTTCATCTCTCAAAACAGCA 59.406 36.000 0.00 0.00 0.00 4.41
142 143 6.076981 TCCTTTTTCATCTCTCAAAACAGC 57.923 37.500 0.00 0.00 0.00 4.40
143 144 8.108551 AGATCCTTTTTCATCTCTCAAAACAG 57.891 34.615 0.00 0.00 0.00 3.16
144 145 9.224267 CTAGATCCTTTTTCATCTCTCAAAACA 57.776 33.333 0.00 0.00 31.57 2.83
145 146 9.442047 TCTAGATCCTTTTTCATCTCTCAAAAC 57.558 33.333 0.00 0.00 31.57 2.43
147 148 9.610705 CATCTAGATCCTTTTTCATCTCTCAAA 57.389 33.333 1.03 0.00 31.57 2.69
148 149 8.766476 ACATCTAGATCCTTTTTCATCTCTCAA 58.234 33.333 1.03 0.00 31.57 3.02
149 150 8.316497 ACATCTAGATCCTTTTTCATCTCTCA 57.684 34.615 1.03 0.00 31.57 3.27
151 152 7.346698 TGGACATCTAGATCCTTTTTCATCTCT 59.653 37.037 12.58 0.00 35.86 3.10
153 154 7.443302 TGGACATCTAGATCCTTTTTCATCT 57.557 36.000 12.58 0.00 35.86 2.90
155 156 7.637511 ACTTGGACATCTAGATCCTTTTTCAT 58.362 34.615 12.58 0.00 35.86 2.57
156 157 7.020827 ACTTGGACATCTAGATCCTTTTTCA 57.979 36.000 12.58 0.00 35.86 2.69
158 159 6.151817 GCAACTTGGACATCTAGATCCTTTTT 59.848 38.462 12.58 1.98 35.86 1.94
159 160 5.649831 GCAACTTGGACATCTAGATCCTTTT 59.350 40.000 12.58 2.27 35.86 2.27
160 161 5.189180 GCAACTTGGACATCTAGATCCTTT 58.811 41.667 12.58 2.56 35.86 3.11
161 162 4.384647 GGCAACTTGGACATCTAGATCCTT 60.385 45.833 12.58 0.00 35.86 3.36
163 164 3.471680 GGCAACTTGGACATCTAGATCC 58.528 50.000 1.03 3.67 35.37 3.36
165 166 2.743183 GCGGCAACTTGGACATCTAGAT 60.743 50.000 0.00 0.00 0.00 1.98
166 167 1.405526 GCGGCAACTTGGACATCTAGA 60.406 52.381 0.00 0.00 0.00 2.43
167 168 1.009829 GCGGCAACTTGGACATCTAG 58.990 55.000 0.00 0.00 0.00 2.43
168 169 0.323302 TGCGGCAACTTGGACATCTA 59.677 50.000 0.00 0.00 0.00 1.98
169 170 1.073025 TGCGGCAACTTGGACATCT 59.927 52.632 0.00 0.00 0.00 2.90
170 171 1.210155 GTGCGGCAACTTGGACATC 59.790 57.895 3.23 0.00 0.00 3.06
171 172 0.036164 TAGTGCGGCAACTTGGACAT 59.964 50.000 3.23 0.00 0.00 3.06
172 173 0.179043 TTAGTGCGGCAACTTGGACA 60.179 50.000 3.23 0.00 0.00 4.02
175 176 0.240945 CCTTTAGTGCGGCAACTTGG 59.759 55.000 3.23 0.00 0.00 3.61
183 2823 1.175983 TTGGTTGGCCTTTAGTGCGG 61.176 55.000 3.32 0.00 35.27 5.69
189 2829 2.825532 GAGAGCAATTGGTTGGCCTTTA 59.174 45.455 12.13 0.00 35.83 1.85
195 2835 2.827322 TCCAATGAGAGCAATTGGTTGG 59.173 45.455 12.13 14.40 43.83 3.77
215 2855 5.741388 ATCTCAATAGATGGCGTGTTTTC 57.259 39.130 0.00 0.00 41.08 2.29
220 2863 6.450545 TCTTCTAATCTCAATAGATGGCGTG 58.549 40.000 0.00 0.00 41.81 5.34
223 2866 6.813152 GCTCTCTTCTAATCTCAATAGATGGC 59.187 42.308 0.00 0.00 41.81 4.40
227 2870 7.343057 TGTTGGCTCTCTTCTAATCTCAATAGA 59.657 37.037 0.00 0.00 35.80 1.98
231 2874 5.745312 TGTTGGCTCTCTTCTAATCTCAA 57.255 39.130 0.00 0.00 0.00 3.02
238 2881 6.942005 TCATCAAATTTGTTGGCTCTCTTCTA 59.058 34.615 22.83 3.58 0.00 2.10
253 2896 9.480053 CCTGTGAAAGTTTGTATCATCAAATTT 57.520 29.630 0.00 0.00 38.31 1.82
288 2931 0.318529 CGATGTCTCATCCGGCTCTG 60.319 60.000 0.00 0.00 0.00 3.35
289 2932 0.753479 ACGATGTCTCATCCGGCTCT 60.753 55.000 0.00 0.00 0.00 4.09
316 2959 5.803461 TGACGTGTTGGACTAAGATATTTCG 59.197 40.000 0.00 0.00 0.00 3.46
323 2966 2.670229 GCGATGACGTGTTGGACTAAGA 60.670 50.000 0.00 0.00 41.98 2.10
335 2978 4.891727 GATGGCCCGCGATGACGT 62.892 66.667 8.23 0.50 41.98 4.34
345 2988 0.604780 CATCGATGAGGTGATGGCCC 60.605 60.000 21.02 0.00 38.62 5.80
346 2989 0.107456 ACATCGATGAGGTGATGGCC 59.893 55.000 31.33 0.00 44.90 5.36
356 2999 4.831107 TGTTTCTCCAATGACATCGATGA 58.169 39.130 31.33 10.96 0.00 2.92
357 3000 5.550232 TTGTTTCTCCAATGACATCGATG 57.450 39.130 23.68 23.68 0.00 3.84
358 3001 6.381801 GTTTTGTTTCTCCAATGACATCGAT 58.618 36.000 0.00 0.00 0.00 3.59
359 3002 5.278266 GGTTTTGTTTCTCCAATGACATCGA 60.278 40.000 0.00 0.00 0.00 3.59
360 3003 4.917415 GGTTTTGTTTCTCCAATGACATCG 59.083 41.667 0.00 0.00 0.00 3.84
362 3005 4.901250 AGGGTTTTGTTTCTCCAATGACAT 59.099 37.500 0.00 0.00 0.00 3.06
363 3006 4.099266 CAGGGTTTTGTTTCTCCAATGACA 59.901 41.667 0.00 0.00 0.00 3.58
364 3007 4.340950 TCAGGGTTTTGTTTCTCCAATGAC 59.659 41.667 0.00 0.00 0.00 3.06
365 3008 4.541705 TCAGGGTTTTGTTTCTCCAATGA 58.458 39.130 0.00 0.00 0.00 2.57
366 3009 4.262164 CCTCAGGGTTTTGTTTCTCCAATG 60.262 45.833 0.00 0.00 0.00 2.82
367 3010 3.897505 CCTCAGGGTTTTGTTTCTCCAAT 59.102 43.478 0.00 0.00 0.00 3.16
368 3011 3.295973 CCTCAGGGTTTTGTTTCTCCAA 58.704 45.455 0.00 0.00 0.00 3.53
369 3012 2.424234 CCCTCAGGGTTTTGTTTCTCCA 60.424 50.000 0.00 0.00 38.25 3.86
370 3013 2.239400 CCCTCAGGGTTTTGTTTCTCC 58.761 52.381 0.00 0.00 38.25 3.71
399 3042 3.380142 GCATCAACACATGTCCGTTTTT 58.620 40.909 0.00 0.00 0.00 1.94
400 3043 2.604373 CGCATCAACACATGTCCGTTTT 60.604 45.455 0.00 0.00 0.00 2.43
401 3044 1.069296 CGCATCAACACATGTCCGTTT 60.069 47.619 0.00 0.00 0.00 3.60
402 3045 0.516877 CGCATCAACACATGTCCGTT 59.483 50.000 0.00 0.00 0.00 4.44
403 3046 1.298157 CCGCATCAACACATGTCCGT 61.298 55.000 0.00 0.00 0.00 4.69
404 3047 1.425031 CCGCATCAACACATGTCCG 59.575 57.895 0.00 0.00 0.00 4.79
405 3048 1.137404 GCCGCATCAACACATGTCC 59.863 57.895 0.00 0.00 0.00 4.02
406 3049 1.226101 CGCCGCATCAACACATGTC 60.226 57.895 0.00 0.00 0.00 3.06
407 3050 2.689785 CCGCCGCATCAACACATGT 61.690 57.895 0.00 0.00 0.00 3.21
408 3051 2.100797 CCGCCGCATCAACACATG 59.899 61.111 0.00 0.00 0.00 3.21
409 3052 2.529454 TACCCGCCGCATCAACACAT 62.529 55.000 0.00 0.00 0.00 3.21
410 3053 3.241515 TACCCGCCGCATCAACACA 62.242 57.895 0.00 0.00 0.00 3.72
462 3105 5.503662 TCACGGTCAGTATCGCTAATTTA 57.496 39.130 0.00 0.00 30.11 1.40
463 3106 4.360563 CTCACGGTCAGTATCGCTAATTT 58.639 43.478 0.00 0.00 30.11 1.82
476 3429 1.112916 TCCAGAAGTGCTCACGGTCA 61.113 55.000 8.65 0.00 36.20 4.02
519 3493 4.162812 GTGCTCGCATTTATTCCGAAAAA 58.837 39.130 0.00 0.00 0.00 1.94
520 3494 3.426963 GGTGCTCGCATTTATTCCGAAAA 60.427 43.478 0.00 0.00 0.00 2.29
521 3495 2.096819 GGTGCTCGCATTTATTCCGAAA 59.903 45.455 0.00 0.00 0.00 3.46
522 3496 1.668751 GGTGCTCGCATTTATTCCGAA 59.331 47.619 0.00 0.00 0.00 4.30
523 3497 1.295792 GGTGCTCGCATTTATTCCGA 58.704 50.000 0.00 0.00 0.00 4.55
524 3498 1.013596 TGGTGCTCGCATTTATTCCG 58.986 50.000 0.00 0.00 0.00 4.30
525 3499 2.618241 TCATGGTGCTCGCATTTATTCC 59.382 45.455 0.00 0.00 0.00 3.01
526 3500 3.313526 AGTCATGGTGCTCGCATTTATTC 59.686 43.478 0.00 0.00 0.00 1.75
527 3501 3.282021 AGTCATGGTGCTCGCATTTATT 58.718 40.909 0.00 0.00 0.00 1.40
528 3502 2.923121 AGTCATGGTGCTCGCATTTAT 58.077 42.857 0.00 0.00 0.00 1.40
529 3503 2.401583 AGTCATGGTGCTCGCATTTA 57.598 45.000 0.00 0.00 0.00 1.40
530 3504 1.538047 AAGTCATGGTGCTCGCATTT 58.462 45.000 0.00 0.00 0.00 2.32
531 3505 2.401583 TAAGTCATGGTGCTCGCATT 57.598 45.000 0.00 0.00 0.00 3.56
532 3506 2.401583 TTAAGTCATGGTGCTCGCAT 57.598 45.000 0.00 0.00 0.00 4.73
533 3507 2.177394 TTTAAGTCATGGTGCTCGCA 57.823 45.000 0.00 0.00 0.00 5.10
534 3508 2.032178 GGATTTAAGTCATGGTGCTCGC 59.968 50.000 0.03 0.00 0.00 5.03
535 3509 3.310774 CAGGATTTAAGTCATGGTGCTCG 59.689 47.826 4.84 0.00 0.00 5.03
536 3510 4.517285 TCAGGATTTAAGTCATGGTGCTC 58.483 43.478 11.95 0.00 31.24 4.26
537 3511 4.574674 TCAGGATTTAAGTCATGGTGCT 57.425 40.909 11.95 0.00 31.24 4.40
538 3512 4.037208 CCATCAGGATTTAAGTCATGGTGC 59.963 45.833 17.51 0.00 39.12 5.01
539 3513 4.581824 CCCATCAGGATTTAAGTCATGGTG 59.418 45.833 16.36 16.36 39.89 4.17
540 3514 4.796606 CCCATCAGGATTTAAGTCATGGT 58.203 43.478 11.95 2.78 38.24 3.55
541 3515 3.571401 GCCCATCAGGATTTAAGTCATGG 59.429 47.826 11.95 9.88 38.24 3.66
542 3516 4.277672 CAGCCCATCAGGATTTAAGTCATG 59.722 45.833 6.31 6.31 38.24 3.07
543 3517 4.467769 CAGCCCATCAGGATTTAAGTCAT 58.532 43.478 0.03 0.00 38.24 3.06
544 3518 3.371917 CCAGCCCATCAGGATTTAAGTCA 60.372 47.826 0.03 0.00 38.24 3.41
545 3519 3.217626 CCAGCCCATCAGGATTTAAGTC 58.782 50.000 0.00 0.00 38.24 3.01
546 3520 2.091665 CCCAGCCCATCAGGATTTAAGT 60.092 50.000 0.00 0.00 38.24 2.24
547 3521 2.175499 TCCCAGCCCATCAGGATTTAAG 59.825 50.000 0.00 0.00 38.24 1.85
548 3522 2.213310 TCCCAGCCCATCAGGATTTAA 58.787 47.619 0.00 0.00 38.24 1.52
549 3523 1.905839 TCCCAGCCCATCAGGATTTA 58.094 50.000 0.00 0.00 38.24 1.40
550 3524 1.238615 ATCCCAGCCCATCAGGATTT 58.761 50.000 0.00 0.00 35.55 2.17
551 3525 1.707427 GTATCCCAGCCCATCAGGATT 59.293 52.381 0.00 0.00 39.77 3.01
552 3526 1.366319 GTATCCCAGCCCATCAGGAT 58.634 55.000 0.00 0.00 41.90 3.24
553 3527 0.768221 GGTATCCCAGCCCATCAGGA 60.768 60.000 0.00 0.00 38.24 3.86
554 3528 1.061905 TGGTATCCCAGCCCATCAGG 61.062 60.000 0.00 0.00 35.17 3.86
555 3529 0.109342 GTGGTATCCCAGCCCATCAG 59.891 60.000 0.00 0.00 42.94 2.90
556 3530 0.623031 TGTGGTATCCCAGCCCATCA 60.623 55.000 0.00 0.00 42.94 3.07
557 3531 0.550914 TTGTGGTATCCCAGCCCATC 59.449 55.000 0.00 0.00 42.94 3.51
558 3532 1.145738 GATTGTGGTATCCCAGCCCAT 59.854 52.381 0.00 0.00 42.94 4.00
559 3533 0.550914 GATTGTGGTATCCCAGCCCA 59.449 55.000 0.00 0.00 42.94 5.36
560 3534 0.178990 GGATTGTGGTATCCCAGCCC 60.179 60.000 0.00 0.00 42.94 5.19
561 3535 0.550914 TGGATTGTGGTATCCCAGCC 59.449 55.000 0.00 0.00 42.94 4.85
562 3536 2.107204 AGATGGATTGTGGTATCCCAGC 59.893 50.000 0.00 0.00 42.94 4.85
563 3537 5.308825 GTTAGATGGATTGTGGTATCCCAG 58.691 45.833 0.00 0.00 42.94 4.45
564 3538 4.104102 GGTTAGATGGATTGTGGTATCCCA 59.896 45.833 0.00 0.00 42.91 4.37
565 3539 4.104102 TGGTTAGATGGATTGTGGTATCCC 59.896 45.833 0.00 0.00 42.91 3.85
566 3540 5.304686 TGGTTAGATGGATTGTGGTATCC 57.695 43.478 0.00 0.00 43.68 2.59
567 3541 5.940470 GGATGGTTAGATGGATTGTGGTATC 59.060 44.000 0.00 0.00 0.00 2.24
568 3542 5.372363 TGGATGGTTAGATGGATTGTGGTAT 59.628 40.000 0.00 0.00 0.00 2.73
569 3543 4.724293 TGGATGGTTAGATGGATTGTGGTA 59.276 41.667 0.00 0.00 0.00 3.25
570 3544 3.527253 TGGATGGTTAGATGGATTGTGGT 59.473 43.478 0.00 0.00 0.00 4.16
571 3545 4.169059 TGGATGGTTAGATGGATTGTGG 57.831 45.455 0.00 0.00 0.00 4.17
572 3546 4.521639 CCATGGATGGTTAGATGGATTGTG 59.478 45.833 5.56 0.00 43.05 3.33
573 3547 4.733165 CCATGGATGGTTAGATGGATTGT 58.267 43.478 5.56 0.00 43.05 2.71
587 3561 2.849942 TCCTATTGCGAACCATGGATG 58.150 47.619 21.47 8.54 0.00 3.51
588 3562 3.576078 TTCCTATTGCGAACCATGGAT 57.424 42.857 21.47 6.44 0.00 3.41
589 3563 3.358111 TTTCCTATTGCGAACCATGGA 57.642 42.857 21.47 0.00 0.00 3.41
590 3564 4.654091 AATTTCCTATTGCGAACCATGG 57.346 40.909 11.19 11.19 0.00 3.66
591 3565 5.649557 TCAAATTTCCTATTGCGAACCATG 58.350 37.500 0.00 0.00 0.00 3.66
592 3566 5.913137 TCAAATTTCCTATTGCGAACCAT 57.087 34.783 0.00 0.00 0.00 3.55
593 3567 5.713792 TTCAAATTTCCTATTGCGAACCA 57.286 34.783 0.00 0.00 0.00 3.67
594 3568 8.871686 ATAATTCAAATTTCCTATTGCGAACC 57.128 30.769 0.00 0.00 0.00 3.62
622 3596 3.077359 CACTTTCACCTCCAACCTCATC 58.923 50.000 0.00 0.00 0.00 2.92
631 3605 1.064825 TTCTCCCCACTTTCACCTCC 58.935 55.000 0.00 0.00 0.00 4.30
636 3610 3.053245 TCCTTTTGTTCTCCCCACTTTCA 60.053 43.478 0.00 0.00 0.00 2.69
668 3642 5.455201 GGAACGGTTAAACGAACGAATTTTT 59.545 36.000 21.79 0.00 39.12 1.94
669 3643 4.969395 GGAACGGTTAAACGAACGAATTTT 59.031 37.500 21.79 0.00 39.12 1.82
671 3645 3.058983 GGGAACGGTTAAACGAACGAATT 60.059 43.478 21.79 1.28 39.12 2.17
672 3646 2.480037 GGGAACGGTTAAACGAACGAAT 59.520 45.455 21.79 0.00 39.12 3.34
674 3648 1.496934 GGGAACGGTTAAACGAACGA 58.503 50.000 21.79 0.00 39.12 3.85
691 3699 6.442952 TGAACATTGAATCTTTTACAACGGG 58.557 36.000 0.00 0.00 0.00 5.28
758 3769 3.243035 CGCGAATATTCCATTGGCAAGAA 60.243 43.478 0.00 5.19 33.27 2.52
822 3847 6.207810 TGTGATTTTGAAGGCGGTAATTAAGT 59.792 34.615 0.00 0.00 0.00 2.24
856 3881 4.273969 CCGTATGCGTAATGGTAAATTGGT 59.726 41.667 1.69 0.00 36.15 3.67
902 3931 4.362279 GCGAATGTGGTACGTAAGGATTA 58.638 43.478 0.00 0.00 46.39 1.75
912 3941 0.035820 TTGGGAGGCGAATGTGGTAC 60.036 55.000 0.00 0.00 0.00 3.34
930 3959 5.313280 TGGTGCGTATTAATAGGGGATTT 57.687 39.130 15.11 0.00 0.00 2.17
932 3961 4.806286 GCTTGGTGCGTATTAATAGGGGAT 60.806 45.833 15.11 0.00 0.00 3.85
985 4021 0.804989 GCCATCAGTGTGTGTTAGCC 59.195 55.000 0.00 0.00 0.00 3.93
992 4028 2.347490 GACCCGCCATCAGTGTGT 59.653 61.111 0.00 0.00 0.00 3.72
993 4029 2.815211 CGACCCGCCATCAGTGTG 60.815 66.667 0.00 0.00 0.00 3.82
1542 4631 2.764128 TCGGTGGAGAGGATGCCC 60.764 66.667 0.00 0.00 0.00 5.36
2256 5358 0.381801 GCGCAATGTTCCCGATGATT 59.618 50.000 0.30 0.00 0.00 2.57
2271 5373 2.689785 CCGGAAATTCTGCTGCGCA 61.690 57.895 10.98 10.98 36.92 6.09
2283 5385 3.243053 TCGAAGCCCACCCGGAAA 61.243 61.111 0.73 0.00 0.00 3.13
2302 5404 2.351276 GACGGTGCCCTTGTCCAT 59.649 61.111 0.00 0.00 0.00 3.41
2386 5488 4.840680 TGGCTATTCCATCAGCTACATAGT 59.159 41.667 0.00 0.00 40.72 2.12
2451 5556 0.104120 AGCGCTGGGGTTTTTGTTTC 59.896 50.000 10.39 0.00 0.00 2.78
2455 5560 1.172180 TGAGAGCGCTGGGGTTTTTG 61.172 55.000 18.48 0.00 0.00 2.44
2462 5567 4.527583 GAGGCTGAGAGCGCTGGG 62.528 72.222 18.48 2.51 43.62 4.45
2463 5568 4.527583 GGAGGCTGAGAGCGCTGG 62.528 72.222 18.48 2.92 43.62 4.85
2469 5574 5.738909 TGAAATTAGAAAGGAGGCTGAGAG 58.261 41.667 0.00 0.00 0.00 3.20
2471 5576 6.355747 AGATGAAATTAGAAAGGAGGCTGAG 58.644 40.000 0.00 0.00 0.00 3.35
2477 5582 7.547370 AGACGTGAAGATGAAATTAGAAAGGAG 59.453 37.037 0.00 0.00 0.00 3.69
2496 5601 3.194861 CCTGAAACAAACAGAGACGTGA 58.805 45.455 0.00 0.00 37.54 4.35
2505 5610 8.877864 ATAGATATCCAAACCTGAAACAAACA 57.122 30.769 0.00 0.00 0.00 2.83
2591 5708 4.081365 TCCACACTACCTGCATCGATTTAA 60.081 41.667 0.00 0.00 0.00 1.52
2601 5718 2.684881 CAAATGGATCCACACTACCTGC 59.315 50.000 18.99 0.00 0.00 4.85
2678 5857 5.824097 ACCAACTCAAATTGTTACGGTACTT 59.176 36.000 0.00 0.00 0.00 2.24
2685 5864 5.180492 TGGATCGACCAACTCAAATTGTTAC 59.820 40.000 4.51 0.00 46.75 2.50
2688 5867 3.750371 TGGATCGACCAACTCAAATTGT 58.250 40.909 4.51 0.00 46.75 2.71
2703 5882 0.040870 CTCCATCTCGACGTGGATCG 60.041 60.000 12.97 0.00 43.20 3.69
2714 5893 6.323739 AGGACAAGATAAGAGAACTCCATCTC 59.676 42.308 13.29 0.00 45.06 2.75
2719 5898 6.378848 ACTGTAGGACAAGATAAGAGAACTCC 59.621 42.308 0.00 0.00 0.00 3.85
2725 5904 6.516739 TGTCACTGTAGGACAAGATAAGAG 57.483 41.667 0.00 0.00 41.96 2.85
2743 5922 5.192927 TGGGATGGAGTGAATATTTGTCAC 58.807 41.667 0.00 0.00 44.75 3.67
2753 5932 9.964354 CATTCTTATATTATGGGATGGAGTGAA 57.036 33.333 0.00 0.00 0.00 3.18
2754 5933 9.116080 ACATTCTTATATTATGGGATGGAGTGA 57.884 33.333 0.00 0.00 0.00 3.41
2755 5934 9.745018 AACATTCTTATATTATGGGATGGAGTG 57.255 33.333 0.00 0.00 0.00 3.51
2796 5975 8.832521 TCACAATATAAGAACGTTTTTGACACT 58.167 29.630 13.87 0.00 0.00 3.55
2797 5976 8.996988 TCACAATATAAGAACGTTTTTGACAC 57.003 30.769 13.87 0.00 0.00 3.67
2798 5977 9.047371 TCTCACAATATAAGAACGTTTTTGACA 57.953 29.630 13.87 0.01 0.00 3.58
2799 5978 9.314501 GTCTCACAATATAAGAACGTTTTTGAC 57.685 33.333 13.87 5.89 0.00 3.18
2800 5979 8.218441 CGTCTCACAATATAAGAACGTTTTTGA 58.782 33.333 13.87 2.81 0.00 2.69
2801 5980 7.477422 CCGTCTCACAATATAAGAACGTTTTTG 59.523 37.037 13.87 8.38 0.00 2.44
2802 5981 7.385752 TCCGTCTCACAATATAAGAACGTTTTT 59.614 33.333 9.22 9.22 0.00 1.94
2803 5982 6.869913 TCCGTCTCACAATATAAGAACGTTTT 59.130 34.615 0.46 0.00 0.00 2.43
2804 5983 6.392354 TCCGTCTCACAATATAAGAACGTTT 58.608 36.000 0.46 0.00 0.00 3.60
2805 5984 5.957798 TCCGTCTCACAATATAAGAACGTT 58.042 37.500 0.00 0.00 0.00 3.99
2806 5985 5.450137 CCTCCGTCTCACAATATAAGAACGT 60.450 44.000 0.00 0.00 0.00 3.99
2807 5986 4.976731 CCTCCGTCTCACAATATAAGAACG 59.023 45.833 0.00 0.00 0.00 3.95
2808 5987 5.068723 TCCCTCCGTCTCACAATATAAGAAC 59.931 44.000 0.00 0.00 0.00 3.01
2809 5988 5.205821 TCCCTCCGTCTCACAATATAAGAA 58.794 41.667 0.00 0.00 0.00 2.52
2810 5989 4.800023 TCCCTCCGTCTCACAATATAAGA 58.200 43.478 0.00 0.00 0.00 2.10
2811 5990 4.585162 ACTCCCTCCGTCTCACAATATAAG 59.415 45.833 0.00 0.00 0.00 1.73
2812 5991 4.543689 ACTCCCTCCGTCTCACAATATAA 58.456 43.478 0.00 0.00 0.00 0.98
2813 5992 4.180377 ACTCCCTCCGTCTCACAATATA 57.820 45.455 0.00 0.00 0.00 0.86
2814 5993 3.033659 ACTCCCTCCGTCTCACAATAT 57.966 47.619 0.00 0.00 0.00 1.28
2815 5994 2.526888 ACTCCCTCCGTCTCACAATA 57.473 50.000 0.00 0.00 0.00 1.90
2816 5995 2.526888 TACTCCCTCCGTCTCACAAT 57.473 50.000 0.00 0.00 0.00 2.71
2817 5996 2.526888 ATACTCCCTCCGTCTCACAA 57.473 50.000 0.00 0.00 0.00 3.33
2818 5997 3.878237 ATATACTCCCTCCGTCTCACA 57.122 47.619 0.00 0.00 0.00 3.58
2819 5998 3.188873 CGAATATACTCCCTCCGTCTCAC 59.811 52.174 0.00 0.00 0.00 3.51
2820 5999 3.181447 ACGAATATACTCCCTCCGTCTCA 60.181 47.826 0.00 0.00 0.00 3.27
2821 6000 3.188873 CACGAATATACTCCCTCCGTCTC 59.811 52.174 0.00 0.00 0.00 3.36
2822 6001 3.147629 CACGAATATACTCCCTCCGTCT 58.852 50.000 0.00 0.00 0.00 4.18
2823 6002 2.883386 ACACGAATATACTCCCTCCGTC 59.117 50.000 0.00 0.00 0.00 4.79
2824 6003 2.621998 CACACGAATATACTCCCTCCGT 59.378 50.000 0.00 0.00 0.00 4.69
2825 6004 2.621998 ACACACGAATATACTCCCTCCG 59.378 50.000 0.00 0.00 0.00 4.63
2826 6005 3.890147 AGACACACGAATATACTCCCTCC 59.110 47.826 0.00 0.00 0.00 4.30
2827 6006 4.579340 TGAGACACACGAATATACTCCCTC 59.421 45.833 0.00 0.00 0.00 4.30
2828 6007 4.533815 TGAGACACACGAATATACTCCCT 58.466 43.478 0.00 0.00 0.00 4.20
2829 6008 4.913335 TGAGACACACGAATATACTCCC 57.087 45.455 0.00 0.00 0.00 4.30
2830 6009 4.733887 CGTTGAGACACACGAATATACTCC 59.266 45.833 0.00 0.00 0.00 3.85
2831 6010 5.227391 CACGTTGAGACACACGAATATACTC 59.773 44.000 0.00 0.00 0.00 2.59
2906 6085 9.751542 ATGTTTGTTTTATCAATTGAAACGGTA 57.248 25.926 13.09 0.00 36.36 4.02
2982 6169 1.202371 TGGCGACGAATGTGAGGTATC 60.202 52.381 0.00 0.00 0.00 2.24
3125 6314 4.229096 TCAGCGTCTTGAAATTTTGATGC 58.771 39.130 18.17 18.17 40.54 3.91
3174 6363 1.521906 TGTTGACACGTCCGGGTTG 60.522 57.895 0.00 0.00 0.00 3.77
3175 6364 1.522130 GTGTTGACACGTCCGGGTT 60.522 57.895 0.00 0.00 37.10 4.11
3176 6365 2.107546 GTGTTGACACGTCCGGGT 59.892 61.111 0.00 0.00 37.10 5.28
3185 6374 2.174969 GCGGGTTGACGTGTTGACA 61.175 57.895 0.00 0.00 35.98 3.58
3186 6375 1.503818 ATGCGGGTTGACGTGTTGAC 61.504 55.000 0.00 0.00 35.98 3.18
3188 6377 1.206578 GATGCGGGTTGACGTGTTG 59.793 57.895 0.00 0.00 35.98 3.33
3189 6378 2.314647 CGATGCGGGTTGACGTGTT 61.315 57.895 0.00 0.00 35.98 3.32
3190 6379 2.736995 CGATGCGGGTTGACGTGT 60.737 61.111 0.00 0.00 35.98 4.49
3191 6380 3.487202 CCGATGCGGGTTGACGTG 61.487 66.667 0.00 0.00 44.15 4.49
3209 6404 2.126580 GTCGGACGAGTCAACGGG 60.127 66.667 5.55 0.00 37.61 5.28
3225 6420 1.065551 GCTTGCCAGAAAACGAACAGT 59.934 47.619 0.00 0.00 0.00 3.55
3282 6477 1.377333 CTCTCGAAAACCTGCCCCC 60.377 63.158 0.00 0.00 0.00 5.40
3283 6478 0.673956 GACTCTCGAAAACCTGCCCC 60.674 60.000 0.00 0.00 0.00 5.80
3284 6479 0.673956 GGACTCTCGAAAACCTGCCC 60.674 60.000 0.00 0.00 0.00 5.36
3285 6480 0.034896 TGGACTCTCGAAAACCTGCC 59.965 55.000 0.00 0.00 0.00 4.85
3286 6481 1.000955 TCTGGACTCTCGAAAACCTGC 59.999 52.381 0.00 0.00 0.00 4.85
3287 6482 2.610727 GGTCTGGACTCTCGAAAACCTG 60.611 54.545 0.67 0.00 0.00 4.00
3294 6489 0.894184 GTGGTGGTCTGGACTCTCGA 60.894 60.000 0.67 0.00 0.00 4.04
3295 6490 1.587054 GTGGTGGTCTGGACTCTCG 59.413 63.158 0.67 0.00 0.00 4.04
3308 6503 2.549754 GTCAAAGTCAGACATGGTGGTG 59.450 50.000 2.66 0.00 36.06 4.17
3309 6504 2.172505 TGTCAAAGTCAGACATGGTGGT 59.827 45.455 2.66 0.00 40.80 4.16
3311 6506 2.549754 GGTGTCAAAGTCAGACATGGTG 59.450 50.000 2.66 0.00 46.52 4.17
3312 6507 2.487265 GGGTGTCAAAGTCAGACATGGT 60.487 50.000 2.66 0.00 46.52 3.55
3316 6511 1.475034 GCTGGGTGTCAAAGTCAGACA 60.475 52.381 2.66 0.00 43.23 3.41
3319 6514 0.890996 GGGCTGGGTGTCAAAGTCAG 60.891 60.000 0.00 0.00 0.00 3.51
3325 6520 1.640593 TTGAGTGGGCTGGGTGTCAA 61.641 55.000 0.00 0.00 0.00 3.18
3327 6522 0.251341 ATTTGAGTGGGCTGGGTGTC 60.251 55.000 0.00 0.00 0.00 3.67
3334 6539 2.616510 CGAAAGAGGATTTGAGTGGGCT 60.617 50.000 0.00 0.00 0.00 5.19
3344 6549 5.886474 GGGGAAAATAGAACGAAAGAGGATT 59.114 40.000 0.00 0.00 0.00 3.01
3349 6554 4.042435 AGTGGGGGAAAATAGAACGAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
3353 6558 2.237893 GGAGTGGGGGAAAATAGAACGA 59.762 50.000 0.00 0.00 0.00 3.85
3356 6561 3.855599 TGATGGAGTGGGGGAAAATAGAA 59.144 43.478 0.00 0.00 0.00 2.10
3361 6566 0.407918 GGTGATGGAGTGGGGGAAAA 59.592 55.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.