Multiple sequence alignment - TraesCS3B01G138900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G138900 chr3B 100.000 3314 0 0 1 3314 125525355 125522042 0.000000e+00 6120
1 TraesCS3B01G138900 chr3B 92.087 1327 93 8 1001 2321 125778975 125780295 0.000000e+00 1858
2 TraesCS3B01G138900 chr3B 91.886 1331 98 8 996 2321 125551787 125553112 0.000000e+00 1851
3 TraesCS3B01G138900 chr3D 90.649 2973 164 51 1 2894 79422403 79419466 0.000000e+00 3845
4 TraesCS3B01G138900 chr3D 92.078 1338 91 8 1001 2323 79504251 79505588 0.000000e+00 1869
5 TraesCS3B01G138900 chr3D 90.508 1338 115 5 996 2321 79428062 79429399 0.000000e+00 1757
6 TraesCS3B01G138900 chr3D 96.825 63 2 0 3223 3285 79419427 79419365 4.520000e-19 106
7 TraesCS3B01G138900 chr3A 90.531 2672 141 51 285 2894 93043606 93040985 0.000000e+00 3430
8 TraesCS3B01G138900 chr3A 91.314 1324 109 5 1001 2321 93337359 93338679 0.000000e+00 1803
9 TraesCS3B01G138900 chr3A 91.121 1329 109 7 1001 2323 93263757 93265082 0.000000e+00 1792
10 TraesCS3B01G138900 chr3A 91.481 270 23 0 2052 2321 93265663 93265932 4.040000e-99 372
11 TraesCS3B01G138900 chr3A 88.496 226 22 2 1 222 93044083 93043858 1.520000e-68 270
12 TraesCS3B01G138900 chr3A 95.238 63 2 1 3223 3285 93040951 93040890 7.570000e-17 99
13 TraesCS3B01G138900 chr1A 81.520 855 129 24 1445 2292 129004474 129003642 0.000000e+00 676
14 TraesCS3B01G138900 chr1A 75.397 378 70 17 1023 1395 129004986 129004627 9.520000e-36 161
15 TraesCS3B01G138900 chr2D 92.409 303 22 1 2893 3195 12302162 12301861 6.570000e-117 431
16 TraesCS3B01G138900 chr2D 92.409 303 22 1 2893 3195 618294776 618294475 6.570000e-117 431
17 TraesCS3B01G138900 chr1B 91.667 312 24 2 2892 3203 484457554 484457863 6.570000e-117 431
18 TraesCS3B01G138900 chr7D 92.105 304 23 1 2892 3195 49806592 49806894 8.500000e-116 427
19 TraesCS3B01G138900 chr5D 91.830 306 25 0 2891 3196 521863986 521864291 8.500000e-116 427
20 TraesCS3B01G138900 chr6D 91.830 306 23 2 2892 3197 11913198 11913501 3.060000e-115 425
21 TraesCS3B01G138900 chr2A 91.830 306 23 2 2893 3197 743327791 743327487 3.060000e-115 425
22 TraesCS3B01G138900 chr1D 92.079 303 23 1 2892 3194 10673376 10673075 3.060000e-115 425
23 TraesCS3B01G138900 chr4D 91.776 304 23 1 2893 3196 21890202 21890503 3.950000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G138900 chr3B 125522042 125525355 3313 True 6120.000000 6120 100.000000 1 3314 1 chr3B.!!$R1 3313
1 TraesCS3B01G138900 chr3B 125778975 125780295 1320 False 1858.000000 1858 92.087000 1001 2321 1 chr3B.!!$F2 1320
2 TraesCS3B01G138900 chr3B 125551787 125553112 1325 False 1851.000000 1851 91.886000 996 2321 1 chr3B.!!$F1 1325
3 TraesCS3B01G138900 chr3D 79419365 79422403 3038 True 1975.500000 3845 93.737000 1 3285 2 chr3D.!!$R1 3284
4 TraesCS3B01G138900 chr3D 79504251 79505588 1337 False 1869.000000 1869 92.078000 1001 2323 1 chr3D.!!$F2 1322
5 TraesCS3B01G138900 chr3D 79428062 79429399 1337 False 1757.000000 1757 90.508000 996 2321 1 chr3D.!!$F1 1325
6 TraesCS3B01G138900 chr3A 93337359 93338679 1320 False 1803.000000 1803 91.314000 1001 2321 1 chr3A.!!$F1 1320
7 TraesCS3B01G138900 chr3A 93040890 93044083 3193 True 1266.333333 3430 91.421667 1 3285 3 chr3A.!!$R1 3284
8 TraesCS3B01G138900 chr3A 93263757 93265932 2175 False 1082.000000 1792 91.301000 1001 2323 2 chr3A.!!$F2 1322
9 TraesCS3B01G138900 chr1A 129003642 129004986 1344 True 418.500000 676 78.458500 1023 2292 2 chr1A.!!$R1 1269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 669 0.107703 ATACACCATGCCACTGTCGG 60.108 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 2766 0.243907 TTCCTCTCGCCTTCGTCTTG 59.756 55.0 0.0 0.0 36.96 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 1.128878 CGATGGATAGACGGACGCTAG 59.871 57.143 0.00 0.00 0.00 3.42
192 193 2.401583 TTGATAGTTCAGGCACGCAT 57.598 45.000 0.00 0.00 32.27 4.73
195 196 1.594862 GATAGTTCAGGCACGCATGTC 59.405 52.381 3.37 0.00 0.00 3.06
199 200 1.360931 TTCAGGCACGCATGTCATCG 61.361 55.000 3.37 0.00 30.46 3.84
204 210 2.202743 ACGCATGTCATCGGTCCG 60.203 61.111 4.39 4.39 0.00 4.79
218 224 1.202065 CGGTCCGAAGATGTGCAAATG 60.202 52.381 4.91 0.00 0.00 2.32
222 354 3.126858 GTCCGAAGATGTGCAAATGCTAA 59.873 43.478 6.97 0.00 42.66 3.09
228 360 6.453265 CGAAGATGTGCAAATGCTAAAACATG 60.453 38.462 12.16 0.00 42.66 3.21
229 361 4.628333 AGATGTGCAAATGCTAAAACATGC 59.372 37.500 12.16 6.11 42.66 4.06
230 362 3.725490 TGTGCAAATGCTAAAACATGCA 58.275 36.364 6.97 0.00 43.67 3.96
231 363 3.493877 TGTGCAAATGCTAAAACATGCAC 59.506 39.130 18.70 18.70 44.26 4.57
269 494 3.058160 GCGGGCTGATGTTGCAGT 61.058 61.111 0.00 0.00 38.17 4.40
270 495 3.044059 GCGGGCTGATGTTGCAGTC 62.044 63.158 0.00 0.00 39.73 3.51
298 527 1.442769 GGTGACTGATTGATGCGTGT 58.557 50.000 0.00 0.00 0.00 4.49
411 643 1.949525 CCCTGCCTGAATTAATGGACG 59.050 52.381 0.00 0.00 0.00 4.79
413 645 1.949525 CTGCCTGAATTAATGGACGGG 59.050 52.381 9.63 9.63 0.00 5.28
419 651 5.373222 CCTGAATTAATGGACGGGTCAATA 58.627 41.667 0.75 0.00 0.00 1.90
420 652 5.238650 CCTGAATTAATGGACGGGTCAATAC 59.761 44.000 0.75 0.00 0.00 1.89
421 653 5.746284 TGAATTAATGGACGGGTCAATACA 58.254 37.500 0.75 0.00 0.00 2.29
422 654 5.587043 TGAATTAATGGACGGGTCAATACAC 59.413 40.000 0.75 0.00 0.00 2.90
436 669 0.107703 ATACACCATGCCACTGTCGG 60.108 55.000 0.00 0.00 0.00 4.79
446 679 2.121116 CCACTGTCGGCTCGTATTAG 57.879 55.000 0.00 0.00 0.00 1.73
504 765 6.780031 ACTGACAGAGATACATTACCAGCTAT 59.220 38.462 10.08 0.00 0.00 2.97
505 766 7.288852 ACTGACAGAGATACATTACCAGCTATT 59.711 37.037 10.08 0.00 0.00 1.73
506 767 8.706322 TGACAGAGATACATTACCAGCTATTA 57.294 34.615 0.00 0.00 0.00 0.98
524 785 0.614697 TAGCAGCCTAGCACTCCACA 60.615 55.000 0.00 0.00 36.85 4.17
525 786 1.743252 GCAGCCTAGCACTCCACAC 60.743 63.158 0.00 0.00 0.00 3.82
536 797 0.391661 ACTCCACACGATGATGGTGC 60.392 55.000 7.52 0.00 38.98 5.01
574 835 2.352030 CCCGTGCCATGATAATTGATGC 60.352 50.000 0.00 0.00 0.00 3.91
578 839 2.293955 TGCCATGATAATTGATGCACGG 59.706 45.455 0.00 0.00 0.00 4.94
638 903 0.461548 CGAGGCTGCAAGTGGATAGA 59.538 55.000 0.50 0.00 35.30 1.98
732 1021 5.615289 AGAAAATATCATCCCGGTCAAGAG 58.385 41.667 0.00 0.00 0.00 2.85
799 1089 1.524621 CCCATCCTCGTCACCATGC 60.525 63.158 0.00 0.00 0.00 4.06
800 1090 1.524621 CCATCCTCGTCACCATGCC 60.525 63.158 0.00 0.00 0.00 4.40
802 1092 0.392863 CATCCTCGTCACCATGCCAA 60.393 55.000 0.00 0.00 0.00 4.52
804 1094 0.605319 TCCTCGTCACCATGCCAAAC 60.605 55.000 0.00 0.00 0.00 2.93
805 1095 0.888736 CCTCGTCACCATGCCAAACA 60.889 55.000 0.00 0.00 0.00 2.83
810 1100 2.687370 GTCACCATGCCAAACATTTCC 58.313 47.619 0.00 0.00 36.64 3.13
843 1133 2.248487 GCTCCTATAAATACGACGCGG 58.752 52.381 12.47 0.00 0.00 6.46
1154 1462 2.437359 CTTCAAGCCGGCTCCTGG 60.437 66.667 32.93 19.55 0.00 4.45
1224 1532 2.435693 GCAGGCCCTCGTCCAGTAT 61.436 63.158 0.00 0.00 0.00 2.12
1230 1538 1.784358 CCCTCGTCCAGTATTACCCA 58.216 55.000 0.00 0.00 0.00 4.51
1314 1622 4.681978 AGCGGCGTCTGGTTCACC 62.682 66.667 9.37 0.00 0.00 4.02
1542 1953 3.055719 CAGTTCATGGCCGCCGTT 61.056 61.111 0.00 0.00 0.00 4.44
1936 2350 0.865639 CTACATCATGCGCGTGTCGA 60.866 55.000 27.72 10.72 41.67 4.20
1938 2352 2.126110 ATCATGCGCGTGTCGACA 60.126 55.556 27.72 15.76 41.67 4.35
2154 2568 2.682494 GTGGACTACGGCTGGGGA 60.682 66.667 0.00 0.00 0.00 4.81
2217 2631 0.865111 CGACGTGCATCTTGGTGAAA 59.135 50.000 0.00 0.00 0.00 2.69
2352 2766 1.270893 ACGGAGCCAAAGAAGAAGTCC 60.271 52.381 0.00 0.00 0.00 3.85
2377 2791 1.404181 CGAAGGCGAGAGGAATTGACA 60.404 52.381 0.00 0.00 40.82 3.58
2602 3174 4.350346 TGTTTTGTTTCTCTTGTCGCATG 58.650 39.130 0.00 0.00 0.00 4.06
2653 3225 4.131376 GTGTGCTCACTGTGTGCT 57.869 55.556 28.28 0.00 40.98 4.40
2654 3226 1.937391 GTGTGCTCACTGTGTGCTC 59.063 57.895 28.28 25.37 40.98 4.26
2655 3227 1.227645 TGTGCTCACTGTGTGCTCC 60.228 57.895 28.28 20.70 37.71 4.70
2656 3228 2.029518 TGCTCACTGTGTGCTCCG 59.970 61.111 28.28 6.15 37.71 4.63
2657 3229 3.418068 GCTCACTGTGTGCTCCGC 61.418 66.667 23.29 7.97 34.37 5.54
2703 3275 0.107897 ATTGCACGGCCGATTCAGTA 60.108 50.000 35.90 12.36 0.00 2.74
2704 3276 0.739462 TTGCACGGCCGATTCAGTAG 60.739 55.000 35.90 11.31 0.00 2.57
2705 3277 1.153628 GCACGGCCGATTCAGTAGT 60.154 57.895 35.90 1.64 0.00 2.73
2706 3278 1.421410 GCACGGCCGATTCAGTAGTG 61.421 60.000 35.90 17.51 0.00 2.74
2707 3279 1.153628 ACGGCCGATTCAGTAGTGC 60.154 57.895 35.90 0.00 0.00 4.40
2727 3300 2.969806 AAGCCAGTGATGCAACGCG 61.970 57.895 3.53 3.53 0.00 6.01
2739 3312 0.852136 GCAACGCGCAACAATTTTCT 59.148 45.000 5.73 0.00 41.79 2.52
2744 3317 1.574477 CGCGCAACAATTTTCTGATCG 59.426 47.619 8.75 0.00 0.00 3.69
2748 3321 3.307674 GCAACAATTTTCTGATCGTGCA 58.692 40.909 0.00 0.00 0.00 4.57
2771 3344 0.179171 ATCTCGTCGTAGCACAACCG 60.179 55.000 0.00 0.00 0.00 4.44
2774 3347 0.661187 TCGTCGTAGCACAACCGTTC 60.661 55.000 0.00 0.00 0.00 3.95
2775 3348 0.662374 CGTCGTAGCACAACCGTTCT 60.662 55.000 0.00 0.00 0.00 3.01
2776 3349 0.782384 GTCGTAGCACAACCGTTCTG 59.218 55.000 0.00 0.00 0.00 3.02
2777 3350 0.942410 TCGTAGCACAACCGTTCTGC 60.942 55.000 3.49 3.49 0.00 4.26
2778 3351 1.218875 CGTAGCACAACCGTTCTGCA 61.219 55.000 13.17 0.00 33.06 4.41
2779 3352 1.156736 GTAGCACAACCGTTCTGCAT 58.843 50.000 13.17 2.54 33.06 3.96
2780 3353 1.128692 GTAGCACAACCGTTCTGCATC 59.871 52.381 13.17 3.10 33.06 3.91
2781 3354 1.210155 GCACAACCGTTCTGCATCC 59.790 57.895 6.63 0.00 0.00 3.51
2782 3355 1.514678 GCACAACCGTTCTGCATCCA 61.515 55.000 6.63 0.00 0.00 3.41
2783 3356 0.238289 CACAACCGTTCTGCATCCAC 59.762 55.000 0.00 0.00 0.00 4.02
2888 3466 5.222007 ACTGGATGGACATTGATAGGAATCC 60.222 44.000 0.00 0.00 34.25 3.01
2894 3472 5.104527 TGGACATTGATAGGAATCCGACTTT 60.105 40.000 0.00 0.00 0.00 2.66
2895 3473 5.823045 GGACATTGATAGGAATCCGACTTTT 59.177 40.000 0.00 0.00 0.00 2.27
2915 3493 4.782252 TTTTGTAACACAGTACAGACGC 57.218 40.909 0.00 0.00 35.47 5.19
2916 3494 3.439895 TTGTAACACAGTACAGACGCA 57.560 42.857 0.00 0.00 35.47 5.24
2918 3496 3.377439 TGTAACACAGTACAGACGCAAG 58.623 45.455 0.00 0.00 34.73 4.01
2919 3497 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
2920 3498 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
2933 3511 2.956386 CGCAAGCGTTCATATACACAC 58.044 47.619 6.25 0.00 34.35 3.82
2934 3512 2.594269 CGCAAGCGTTCATATACACACG 60.594 50.000 6.25 0.00 35.71 4.49
2941 3519 3.420035 CGTTCATATACACACGCATACGC 60.420 47.826 0.00 0.00 45.53 4.42
2942 3520 3.636282 TCATATACACACGCATACGCT 57.364 42.857 0.00 0.00 45.53 5.07
2943 3521 3.561503 TCATATACACACGCATACGCTC 58.438 45.455 0.00 0.00 45.53 5.03
2944 3522 3.003897 TCATATACACACGCATACGCTCA 59.996 43.478 0.00 0.00 45.53 4.26
2945 3523 1.556564 ATACACACGCATACGCTCAC 58.443 50.000 0.00 0.00 45.53 3.51
2946 3524 0.457166 TACACACGCATACGCTCACC 60.457 55.000 0.00 0.00 45.53 4.02
2947 3525 1.446099 CACACGCATACGCTCACCT 60.446 57.895 0.00 0.00 45.53 4.00
2948 3526 1.153823 ACACGCATACGCTCACCTC 60.154 57.895 0.00 0.00 45.53 3.85
2949 3527 1.139734 CACGCATACGCTCACCTCT 59.860 57.895 0.00 0.00 45.53 3.69
2950 3528 0.380733 CACGCATACGCTCACCTCTA 59.619 55.000 0.00 0.00 45.53 2.43
2951 3529 1.001268 CACGCATACGCTCACCTCTAT 60.001 52.381 0.00 0.00 45.53 1.98
2952 3530 1.001268 ACGCATACGCTCACCTCTATG 60.001 52.381 0.00 0.00 45.53 2.23
2953 3531 1.266989 CGCATACGCTCACCTCTATGA 59.733 52.381 0.00 0.00 35.30 2.15
2954 3532 2.287608 CGCATACGCTCACCTCTATGAA 60.288 50.000 0.00 0.00 35.30 2.57
2955 3533 3.053455 GCATACGCTCACCTCTATGAAC 58.947 50.000 0.00 0.00 34.30 3.18
2956 3534 3.300857 CATACGCTCACCTCTATGAACG 58.699 50.000 0.00 0.00 42.48 3.95
2957 3535 0.179134 ACGCTCACCTCTATGAACGC 60.179 55.000 0.00 0.00 40.91 4.84
2958 3536 0.179137 CGCTCACCTCTATGAACGCA 60.179 55.000 0.00 0.00 32.08 5.24
2959 3537 1.281899 GCTCACCTCTATGAACGCAC 58.718 55.000 0.00 0.00 0.00 5.34
2960 3538 1.404181 GCTCACCTCTATGAACGCACA 60.404 52.381 0.00 0.00 0.00 4.57
2961 3539 2.263077 CTCACCTCTATGAACGCACAC 58.737 52.381 0.00 0.00 0.00 3.82
2962 3540 1.616374 TCACCTCTATGAACGCACACA 59.384 47.619 0.00 0.00 0.00 3.72
2963 3541 1.726791 CACCTCTATGAACGCACACAC 59.273 52.381 0.00 0.00 0.00 3.82
2964 3542 1.618837 ACCTCTATGAACGCACACACT 59.381 47.619 0.00 0.00 0.00 3.55
2965 3543 2.263077 CCTCTATGAACGCACACACTC 58.737 52.381 0.00 0.00 0.00 3.51
2966 3544 2.352715 CCTCTATGAACGCACACACTCA 60.353 50.000 0.00 0.00 0.00 3.41
2967 3545 3.515630 CTCTATGAACGCACACACTCAT 58.484 45.455 0.00 0.00 33.26 2.90
2968 3546 4.440112 CCTCTATGAACGCACACACTCATA 60.440 45.833 0.00 0.00 31.20 2.15
2969 3547 4.421058 TCTATGAACGCACACACTCATAC 58.579 43.478 0.00 0.00 31.20 2.39
2970 3548 1.790755 TGAACGCACACACTCATACC 58.209 50.000 0.00 0.00 0.00 2.73
2971 3549 1.076332 GAACGCACACACTCATACCC 58.924 55.000 0.00 0.00 0.00 3.69
2972 3550 0.685097 AACGCACACACTCATACCCT 59.315 50.000 0.00 0.00 0.00 4.34
2973 3551 1.552578 ACGCACACACTCATACCCTA 58.447 50.000 0.00 0.00 0.00 3.53
2974 3552 1.203994 ACGCACACACTCATACCCTAC 59.796 52.381 0.00 0.00 0.00 3.18
2975 3553 1.470979 CGCACACACTCATACCCTACC 60.471 57.143 0.00 0.00 0.00 3.18
2976 3554 1.134491 GCACACACTCATACCCTACCC 60.134 57.143 0.00 0.00 0.00 3.69
2977 3555 1.485066 CACACACTCATACCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2978 3556 1.365028 ACACACTCATACCCTACCCCT 59.635 52.381 0.00 0.00 0.00 4.79
2979 3557 2.588720 ACACACTCATACCCTACCCCTA 59.411 50.000 0.00 0.00 0.00 3.53
2980 3558 3.209152 ACACACTCATACCCTACCCCTAT 59.791 47.826 0.00 0.00 0.00 2.57
2981 3559 3.578716 CACACTCATACCCTACCCCTATG 59.421 52.174 0.00 0.00 0.00 2.23
2982 3560 3.469771 ACACTCATACCCTACCCCTATGA 59.530 47.826 0.00 0.00 0.00 2.15
2983 3561 4.090090 CACTCATACCCTACCCCTATGAG 58.910 52.174 10.87 10.87 45.05 2.90
2984 3562 3.100671 CTCATACCCTACCCCTATGAGC 58.899 54.545 0.00 0.00 37.89 4.26
2985 3563 2.453212 TCATACCCTACCCCTATGAGCA 59.547 50.000 0.00 0.00 0.00 4.26
2986 3564 2.393630 TACCCTACCCCTATGAGCAC 57.606 55.000 0.00 0.00 0.00 4.40
2987 3565 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
2988 3566 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
2989 3567 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
2990 3568 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
2991 3569 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
2992 3570 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
2993 3571 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
2994 3572 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
2995 3573 1.209504 CCCTATGAGCACCTCCGAAAA 59.790 52.381 0.00 0.00 0.00 2.29
2996 3574 2.355716 CCCTATGAGCACCTCCGAAAAA 60.356 50.000 0.00 0.00 0.00 1.94
2997 3575 2.678336 CCTATGAGCACCTCCGAAAAAC 59.322 50.000 0.00 0.00 0.00 2.43
2998 3576 2.568623 ATGAGCACCTCCGAAAAACT 57.431 45.000 0.00 0.00 0.00 2.66
2999 3577 1.593196 TGAGCACCTCCGAAAAACTG 58.407 50.000 0.00 0.00 0.00 3.16
3000 3578 1.140052 TGAGCACCTCCGAAAAACTGA 59.860 47.619 0.00 0.00 0.00 3.41
3001 3579 1.801178 GAGCACCTCCGAAAAACTGAG 59.199 52.381 0.00 0.00 0.00 3.35
3002 3580 0.238553 GCACCTCCGAAAAACTGAGC 59.761 55.000 0.00 0.00 0.00 4.26
3003 3581 0.875059 CACCTCCGAAAAACTGAGCC 59.125 55.000 0.00 0.00 0.00 4.70
3004 3582 0.602905 ACCTCCGAAAAACTGAGCCG 60.603 55.000 0.00 0.00 0.00 5.52
3005 3583 1.298859 CCTCCGAAAAACTGAGCCGG 61.299 60.000 0.00 0.00 41.36 6.13
3006 3584 1.912371 CTCCGAAAAACTGAGCCGGC 61.912 60.000 21.89 21.89 39.96 6.13
3007 3585 2.258013 CCGAAAAACTGAGCCGGCA 61.258 57.895 31.54 7.98 33.47 5.69
3008 3586 1.586154 CCGAAAAACTGAGCCGGCAT 61.586 55.000 31.54 14.28 33.47 4.40
3009 3587 1.083489 CGAAAAACTGAGCCGGCATA 58.917 50.000 31.54 16.21 0.00 3.14
3010 3588 1.670811 CGAAAAACTGAGCCGGCATAT 59.329 47.619 31.54 8.11 0.00 1.78
3011 3589 2.286418 CGAAAAACTGAGCCGGCATATC 60.286 50.000 31.54 18.63 0.00 1.63
3012 3590 2.418368 AAAACTGAGCCGGCATATCA 57.582 45.000 31.54 22.44 0.00 2.15
3013 3591 2.645838 AAACTGAGCCGGCATATCAT 57.354 45.000 31.54 6.18 0.00 2.45
3014 3592 2.175878 AACTGAGCCGGCATATCATC 57.824 50.000 31.54 16.99 0.00 2.92
3015 3593 1.346062 ACTGAGCCGGCATATCATCT 58.654 50.000 31.54 4.27 0.00 2.90
3016 3594 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
3017 3595 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
3018 3596 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
3019 3597 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
3020 3598 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
3021 3599 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
3022 3600 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
3023 3601 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
3024 3602 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
3025 3603 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
3026 3604 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
3027 3605 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
3028 3606 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
3029 3607 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
3031 3609 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
3034 3612 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
3035 3613 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
3036 3614 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
3037 3615 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
3038 3616 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
3050 3628 2.754658 CCGTAGGCACCTCGTCCT 60.755 66.667 0.00 0.00 46.14 3.85
3051 3629 2.772691 CCGTAGGCACCTCGTCCTC 61.773 68.421 0.00 0.00 46.14 3.71
3052 3630 2.799371 GTAGGCACCTCGTCCTCG 59.201 66.667 0.00 0.00 34.02 4.63
3053 3631 1.748122 GTAGGCACCTCGTCCTCGA 60.748 63.158 0.00 0.00 44.12 4.04
3054 3632 1.748122 TAGGCACCTCGTCCTCGAC 60.748 63.158 0.00 0.00 41.35 4.20
3073 3651 2.363297 GGGAACGTCTCCTTCCACT 58.637 57.895 13.94 0.00 44.68 4.00
3074 3652 0.037232 GGGAACGTCTCCTTCCACTG 60.037 60.000 13.94 0.00 44.68 3.66
3075 3653 0.966920 GGAACGTCTCCTTCCACTGA 59.033 55.000 8.87 0.00 41.61 3.41
3076 3654 1.343465 GGAACGTCTCCTTCCACTGAA 59.657 52.381 8.87 0.00 41.61 3.02
3077 3655 2.028020 GGAACGTCTCCTTCCACTGAAT 60.028 50.000 8.87 0.00 41.61 2.57
3078 3656 2.751166 ACGTCTCCTTCCACTGAATG 57.249 50.000 0.00 0.00 0.00 2.67
3079 3657 1.338200 ACGTCTCCTTCCACTGAATGC 60.338 52.381 0.00 0.00 0.00 3.56
3080 3658 1.363744 GTCTCCTTCCACTGAATGCG 58.636 55.000 0.00 0.00 0.00 4.73
3081 3659 0.391661 TCTCCTTCCACTGAATGCGC 60.392 55.000 0.00 0.00 0.00 6.09
3082 3660 0.674581 CTCCTTCCACTGAATGCGCA 60.675 55.000 14.96 14.96 0.00 6.09
3083 3661 0.035152 TCCTTCCACTGAATGCGCAT 60.035 50.000 19.28 19.28 0.00 4.73
3084 3662 0.379669 CCTTCCACTGAATGCGCATC 59.620 55.000 25.53 17.12 0.00 3.91
3085 3663 0.027194 CTTCCACTGAATGCGCATCG 59.973 55.000 25.53 17.09 0.00 3.84
3101 3679 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
3102 3680 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
3105 3683 5.828299 TCGCCGGAAATTCTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
3106 3684 5.816919 TCGCCGGAAATTCTGAAATAAATC 58.183 37.500 5.05 0.00 0.00 2.17
3111 3689 7.333174 GCCGGAAATTCTGAAATAAATCCAAAA 59.667 33.333 5.05 0.00 0.00 2.44
3127 3863 3.256879 TCCAAAAATAAATGCGAGCACCA 59.743 39.130 0.00 0.00 0.00 4.17
3129 3865 3.508744 AAAATAAATGCGAGCACCAGG 57.491 42.857 0.00 0.00 0.00 4.45
3132 3868 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
3133 3869 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
3136 3872 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
3138 3874 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
3139 3875 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
3140 3876 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
3145 3881 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
3156 3892 2.765352 CCTGGTGGGCTAGGGATAG 58.235 63.158 0.00 0.00 39.43 2.08
3157 3893 1.484444 CCTGGTGGGCTAGGGATAGC 61.484 65.000 0.00 0.00 39.43 2.97
3158 3894 0.764369 CTGGTGGGCTAGGGATAGCA 60.764 60.000 9.30 0.00 44.51 3.49
3163 3899 2.481289 GGGCTAGGGATAGCACAATC 57.519 55.000 9.30 0.00 45.43 2.67
3164 3900 1.003696 GGGCTAGGGATAGCACAATCC 59.996 57.143 9.30 4.59 45.43 3.01
3172 3908 4.009370 GGATAGCACAATCCCTCTAACC 57.991 50.000 2.18 0.00 39.74 2.85
3173 3909 3.391296 GGATAGCACAATCCCTCTAACCA 59.609 47.826 2.18 0.00 39.74 3.67
3174 3910 4.042187 GGATAGCACAATCCCTCTAACCAT 59.958 45.833 2.18 0.00 39.74 3.55
3175 3911 5.456763 GGATAGCACAATCCCTCTAACCATT 60.457 44.000 2.18 0.00 39.74 3.16
3176 3912 3.891049 AGCACAATCCCTCTAACCATTC 58.109 45.455 0.00 0.00 0.00 2.67
3177 3913 3.266772 AGCACAATCCCTCTAACCATTCA 59.733 43.478 0.00 0.00 0.00 2.57
3178 3914 4.016444 GCACAATCCCTCTAACCATTCAA 58.984 43.478 0.00 0.00 0.00 2.69
3179 3915 4.646492 GCACAATCCCTCTAACCATTCAAT 59.354 41.667 0.00 0.00 0.00 2.57
3181 3917 5.887598 CACAATCCCTCTAACCATTCAATCA 59.112 40.000 0.00 0.00 0.00 2.57
3183 3919 5.715439 ATCCCTCTAACCATTCAATCACA 57.285 39.130 0.00 0.00 0.00 3.58
3188 3924 5.124457 CCTCTAACCATTCAATCACAGGTTG 59.876 44.000 0.00 0.00 42.19 3.77
3190 3926 3.243359 ACCATTCAATCACAGGTTGGT 57.757 42.857 0.00 0.00 0.00 3.67
3191 3927 3.575805 ACCATTCAATCACAGGTTGGTT 58.424 40.909 0.00 0.00 32.23 3.67
3192 3928 3.573967 ACCATTCAATCACAGGTTGGTTC 59.426 43.478 0.00 0.00 32.23 3.62
3193 3929 3.366273 CCATTCAATCACAGGTTGGTTCG 60.366 47.826 0.00 0.00 0.00 3.95
3194 3930 1.234821 TCAATCACAGGTTGGTTCGC 58.765 50.000 0.00 0.00 0.00 4.70
3195 3931 0.950836 CAATCACAGGTTGGTTCGCA 59.049 50.000 0.00 0.00 0.00 5.10
3196 3932 1.336440 CAATCACAGGTTGGTTCGCAA 59.664 47.619 0.00 0.00 0.00 4.85
3197 3933 1.909700 ATCACAGGTTGGTTCGCAAT 58.090 45.000 0.00 0.00 0.00 3.56
3198 3934 2.552599 TCACAGGTTGGTTCGCAATA 57.447 45.000 0.00 0.00 0.00 1.90
3199 3935 2.422597 TCACAGGTTGGTTCGCAATAG 58.577 47.619 0.00 0.00 0.00 1.73
3200 3936 1.468520 CACAGGTTGGTTCGCAATAGG 59.531 52.381 0.00 0.00 0.00 2.57
3201 3937 1.349688 ACAGGTTGGTTCGCAATAGGA 59.650 47.619 0.00 0.00 0.00 2.94
3204 3940 3.065371 CAGGTTGGTTCGCAATAGGAATC 59.935 47.826 0.00 0.00 0.00 2.52
3205 3941 3.054361 AGGTTGGTTCGCAATAGGAATCT 60.054 43.478 0.00 0.00 0.00 2.40
3206 3942 4.163458 AGGTTGGTTCGCAATAGGAATCTA 59.837 41.667 0.00 0.00 0.00 1.98
3207 3943 4.879545 GGTTGGTTCGCAATAGGAATCTAA 59.120 41.667 0.00 0.00 0.00 2.10
3208 3944 5.220796 GGTTGGTTCGCAATAGGAATCTAAC 60.221 44.000 0.00 0.00 0.00 2.34
3209 3945 5.353394 TGGTTCGCAATAGGAATCTAACT 57.647 39.130 0.00 0.00 0.00 2.24
3210 3946 5.741011 TGGTTCGCAATAGGAATCTAACTT 58.259 37.500 0.00 0.00 0.00 2.66
3212 3948 5.815740 GGTTCGCAATAGGAATCTAACTTGA 59.184 40.000 0.00 0.00 0.00 3.02
3213 3949 6.483640 GGTTCGCAATAGGAATCTAACTTGAT 59.516 38.462 0.00 0.00 0.00 2.57
3214 3950 7.656137 GGTTCGCAATAGGAATCTAACTTGATA 59.344 37.037 0.00 0.00 0.00 2.15
3215 3951 8.488764 GTTCGCAATAGGAATCTAACTTGATAC 58.511 37.037 0.00 0.00 0.00 2.24
3217 3953 7.015292 TCGCAATAGGAATCTAACTTGATACCT 59.985 37.037 0.00 0.00 0.00 3.08
3218 3954 7.329717 CGCAATAGGAATCTAACTTGATACCTC 59.670 40.741 0.00 0.00 0.00 3.85
3219 3955 8.150945 GCAATAGGAATCTAACTTGATACCTCA 58.849 37.037 0.00 0.00 0.00 3.86
3220 3956 9.703892 CAATAGGAATCTAACTTGATACCTCAG 57.296 37.037 0.00 0.00 31.68 3.35
3225 3961 5.934402 TCTAACTTGATACCTCAGGAACC 57.066 43.478 0.00 0.00 32.98 3.62
3285 4021 6.029346 ACAAATGATGAGCCTAAACAAAGG 57.971 37.500 0.00 0.00 39.87 3.11
3286 4022 5.047092 ACAAATGATGAGCCTAAACAAAGGG 60.047 40.000 0.00 0.00 37.11 3.95
3288 4024 1.751351 GATGAGCCTAAACAAAGGGCC 59.249 52.381 0.00 0.00 46.31 5.80
3289 4025 0.777446 TGAGCCTAAACAAAGGGCCT 59.223 50.000 0.00 0.00 46.31 5.19
3290 4026 1.271926 TGAGCCTAAACAAAGGGCCTC 60.272 52.381 6.46 0.00 46.31 4.70
3291 4027 1.004862 GAGCCTAAACAAAGGGCCTCT 59.995 52.381 6.46 0.00 46.31 3.69
3292 4028 1.429299 AGCCTAAACAAAGGGCCTCTT 59.571 47.619 6.46 0.93 46.31 2.85
3293 4029 2.158310 AGCCTAAACAAAGGGCCTCTTT 60.158 45.455 6.46 12.02 46.31 2.52
3299 4035 1.465172 AAAGGGCCTCTTTGTCCCC 59.535 57.895 6.46 0.00 43.50 4.81
3300 4036 2.211279 AGGGCCTCTTTGTCCCCT 59.789 61.111 0.00 0.00 42.99 4.79
3303 4039 2.539081 GGCCTCTTTGTCCCCTGGT 61.539 63.158 0.00 0.00 0.00 4.00
3305 4041 0.178961 GCCTCTTTGTCCCCTGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
3306 4042 1.757764 GCCTCTTTGTCCCCTGGTTTT 60.758 52.381 0.00 0.00 0.00 2.43
3307 4043 2.490168 GCCTCTTTGTCCCCTGGTTTTA 60.490 50.000 0.00 0.00 0.00 1.52
3308 4044 3.839778 CCTCTTTGTCCCCTGGTTTTAA 58.160 45.455 0.00 0.00 0.00 1.52
3310 4046 4.651962 CCTCTTTGTCCCCTGGTTTTAAAA 59.348 41.667 0.00 0.00 0.00 1.52
3312 4048 5.024118 TCTTTGTCCCCTGGTTTTAAAACA 58.976 37.500 27.56 15.26 40.63 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.269448 CATTCCACGGTGAAAACCCAG 59.731 52.381 10.28 0.00 0.00 4.45
67 68 1.303091 AATGCCACGCGGAGTTAACC 61.303 55.000 12.47 0.00 0.00 2.85
122 123 0.818445 AGCGTCCGTCTATCCATCGT 60.818 55.000 0.00 0.00 0.00 3.73
143 144 9.813080 GTCTATTCAGTTTCAGACACATTTAAC 57.187 33.333 0.00 0.00 37.84 2.01
173 174 2.009051 CATGCGTGCCTGAACTATCAA 58.991 47.619 0.00 0.00 34.49 2.57
192 193 1.135112 CACATCTTCGGACCGATGACA 60.135 52.381 28.74 12.88 41.41 3.58
195 196 0.460109 TGCACATCTTCGGACCGATG 60.460 55.000 19.12 20.06 42.03 3.84
199 200 1.468054 GCATTTGCACATCTTCGGACC 60.468 52.381 0.00 0.00 41.59 4.46
204 210 6.671402 GCATGTTTTAGCATTTGCACATCTTC 60.671 38.462 5.20 0.00 45.16 2.87
218 224 3.694072 TGGGATGTAGTGCATGTTTTAGC 59.306 43.478 0.00 0.00 38.06 3.09
222 354 3.766545 ACTTGGGATGTAGTGCATGTTT 58.233 40.909 0.00 0.00 38.06 2.83
228 360 6.560253 CCATATTAACTTGGGATGTAGTGC 57.440 41.667 0.00 0.00 0.00 4.40
252 466 3.044059 GACTGCAACATCAGCCCGC 62.044 63.158 0.00 0.00 37.59 6.13
253 467 2.401766 GGACTGCAACATCAGCCCG 61.402 63.158 0.00 0.00 37.59 6.13
254 468 2.401766 CGGACTGCAACATCAGCCC 61.402 63.158 0.00 0.00 37.59 5.19
255 469 1.672356 ACGGACTGCAACATCAGCC 60.672 57.895 0.00 0.00 37.59 4.85
283 508 1.361668 GCCGACACGCATCAATCAGT 61.362 55.000 0.00 0.00 0.00 3.41
387 619 2.887152 CCATTAATTCAGGCAGGGCTAC 59.113 50.000 0.00 0.00 0.00 3.58
411 643 1.102978 GTGGCATGGTGTATTGACCC 58.897 55.000 0.00 0.00 34.79 4.46
413 645 2.420022 GACAGTGGCATGGTGTATTGAC 59.580 50.000 0.00 0.00 0.00 3.18
419 651 2.032528 CCGACAGTGGCATGGTGT 59.967 61.111 0.00 0.00 0.00 4.16
436 669 5.465390 TGTATTTGCACATCCTAATACGAGC 59.535 40.000 10.55 0.00 36.65 5.03
437 670 6.073765 GGTGTATTTGCACATCCTAATACGAG 60.074 42.308 10.55 0.00 40.89 4.18
438 671 5.756347 GGTGTATTTGCACATCCTAATACGA 59.244 40.000 10.55 0.99 40.89 3.43
439 672 5.525745 TGGTGTATTTGCACATCCTAATACG 59.474 40.000 10.55 0.00 40.89 3.06
440 673 6.935741 TGGTGTATTTGCACATCCTAATAC 57.064 37.500 8.96 8.96 40.89 1.89
444 677 3.631686 GCATGGTGTATTTGCACATCCTA 59.368 43.478 0.00 0.00 40.89 2.94
446 679 2.166050 TGCATGGTGTATTTGCACATCC 59.834 45.455 0.00 0.00 41.18 3.51
504 765 0.537188 GTGGAGTGCTAGGCTGCTAA 59.463 55.000 0.00 0.00 0.00 3.09
505 766 0.614697 TGTGGAGTGCTAGGCTGCTA 60.615 55.000 0.00 0.00 0.00 3.49
506 767 1.915266 TGTGGAGTGCTAGGCTGCT 60.915 57.895 0.00 0.00 0.00 4.24
524 785 2.202932 GCTCGGCACCATCATCGT 60.203 61.111 0.00 0.00 0.00 3.73
525 786 2.107750 AGCTCGGCACCATCATCG 59.892 61.111 0.00 0.00 0.00 3.84
708 984 5.611374 TCTTGACCGGGATGATATTTTCTC 58.389 41.667 6.32 0.00 0.00 2.87
710 986 5.611374 TCTCTTGACCGGGATGATATTTTC 58.389 41.667 6.32 0.00 0.00 2.29
799 1089 2.571231 CGCGGGGGAAATGTTTGG 59.429 61.111 0.00 0.00 0.00 3.28
800 1090 2.126110 GCGCGGGGGAAATGTTTG 60.126 61.111 8.83 0.00 0.00 2.93
802 1092 3.370231 GTGCGCGGGGGAAATGTT 61.370 61.111 8.83 0.00 0.00 2.71
825 1115 3.304659 GGAACCGCGTCGTATTTATAGGA 60.305 47.826 4.92 0.00 0.00 2.94
855 1146 0.746063 TGGTTGCTTTGACTTGGCAG 59.254 50.000 0.00 0.00 37.28 4.85
930 1222 1.580059 GGAGGATTGGTGGTAGGTGA 58.420 55.000 0.00 0.00 0.00 4.02
935 1227 1.688311 CGAGAGGGAGGATTGGTGGTA 60.688 57.143 0.00 0.00 0.00 3.25
945 1238 3.535962 GAGCTGGCGAGAGGGAGG 61.536 72.222 0.00 0.00 0.00 4.30
1215 1523 1.535437 GCGAGTGGGTAATACTGGACG 60.535 57.143 0.00 0.00 0.00 4.79
1254 1562 2.204059 AGCAGCCCACCTTCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
1564 1978 3.047877 CGTCAACCCTTCCACGGC 61.048 66.667 0.00 0.00 0.00 5.68
2063 2477 1.436336 GTGATCTGGTACGGGTCCG 59.564 63.158 7.97 7.97 46.12 4.79
2352 2766 0.243907 TTCCTCTCGCCTTCGTCTTG 59.756 55.000 0.00 0.00 36.96 3.02
2406 2820 5.280419 CCATCCAAACAACCAACCCAATATT 60.280 40.000 0.00 0.00 0.00 1.28
2497 2923 3.007831 GCTTTTCCCACCAAATCCAATCA 59.992 43.478 0.00 0.00 0.00 2.57
2590 3162 0.108472 TCTCAGCCATGCGACAAGAG 60.108 55.000 0.00 0.00 0.00 2.85
2602 3174 2.187946 CCACCGTGGATCTCAGCC 59.812 66.667 12.68 0.00 40.96 4.85
2653 3225 2.515057 ACACAAAACGCAGGCGGA 60.515 55.556 18.63 0.00 44.69 5.54
2654 3226 2.051345 GACACAAAACGCAGGCGG 60.051 61.111 18.63 2.36 44.69 6.13
2655 3227 2.425124 CGACACAAAACGCAGGCG 60.425 61.111 12.71 12.71 46.03 5.52
2656 3228 2.051345 CCGACACAAAACGCAGGC 60.051 61.111 0.00 0.00 0.00 4.85
2657 3229 1.278637 GACCGACACAAAACGCAGG 59.721 57.895 0.00 0.00 0.00 4.85
2703 3275 1.975407 GCATCACTGGCTTGGCACT 60.975 57.895 0.00 0.00 0.00 4.40
2704 3276 1.808531 TTGCATCACTGGCTTGGCAC 61.809 55.000 0.00 0.00 0.00 5.01
2705 3277 1.531128 TTGCATCACTGGCTTGGCA 60.531 52.632 0.00 0.00 0.00 4.92
2706 3278 1.080298 GTTGCATCACTGGCTTGGC 60.080 57.895 0.00 0.00 0.00 4.52
2707 3279 1.210931 CGTTGCATCACTGGCTTGG 59.789 57.895 0.00 0.00 0.00 3.61
2727 3300 3.120121 GTGCACGATCAGAAAATTGTTGC 59.880 43.478 0.00 0.00 0.00 4.17
2729 3302 3.249799 TCGTGCACGATCAGAAAATTGTT 59.750 39.130 36.40 0.00 44.22 2.83
2776 3349 4.806571 CATGCTGCAAGTGGATGC 57.193 55.556 6.36 0.00 46.58 3.91
2777 3350 1.226575 CGCATGCTGCAAGTGGATG 60.227 57.895 17.13 0.00 45.36 3.51
2778 3351 1.651240 GACGCATGCTGCAAGTGGAT 61.651 55.000 20.58 2.60 45.36 3.41
2779 3352 2.281692 ACGCATGCTGCAAGTGGA 60.282 55.556 20.58 0.00 45.36 4.02
2780 3353 2.177531 GACGCATGCTGCAAGTGG 59.822 61.111 20.58 9.38 45.36 4.00
2781 3354 2.202260 CGACGCATGCTGCAAGTG 60.202 61.111 17.13 15.90 45.36 3.16
2782 3355 2.357396 TCGACGCATGCTGCAAGT 60.357 55.556 17.13 7.48 45.36 3.16
2783 3356 2.097160 GTCGACGCATGCTGCAAG 59.903 61.111 17.13 2.70 45.36 4.01
2848 3423 9.349713 GTCCATCCAGTAAACCATATGAATAAA 57.650 33.333 3.65 0.00 0.00 1.40
2849 3424 8.498575 TGTCCATCCAGTAAACCATATGAATAA 58.501 33.333 3.65 0.00 0.00 1.40
2850 3425 8.040002 TGTCCATCCAGTAAACCATATGAATA 57.960 34.615 3.65 0.00 0.00 1.75
2851 3426 6.910191 TGTCCATCCAGTAAACCATATGAAT 58.090 36.000 3.65 0.00 0.00 2.57
2894 3472 4.182339 TGCGTCTGTACTGTGTTACAAAA 58.818 39.130 0.00 0.00 0.00 2.44
2895 3473 3.783191 TGCGTCTGTACTGTGTTACAAA 58.217 40.909 0.00 0.00 0.00 2.83
2899 3477 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
2900 3478 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
2901 3479 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
2902 3480 0.939577 ACGCTTGCGTCTGTACTGTG 60.940 55.000 15.19 0.00 0.00 3.66
2904 3482 0.435008 GAACGCTTGCGTCTGTACTG 59.565 55.000 20.87 0.00 0.00 2.74
2905 3483 0.031585 TGAACGCTTGCGTCTGTACT 59.968 50.000 20.87 4.26 0.00 2.73
2906 3484 1.068474 ATGAACGCTTGCGTCTGTAC 58.932 50.000 20.87 10.59 0.00 2.90
2907 3485 2.640346 TATGAACGCTTGCGTCTGTA 57.360 45.000 20.87 10.79 0.00 2.74
2908 3486 2.010145 ATATGAACGCTTGCGTCTGT 57.990 45.000 20.87 11.69 0.00 3.41
2909 3487 2.857748 TGTATATGAACGCTTGCGTCTG 59.142 45.455 20.87 0.00 0.00 3.51
2910 3488 2.858344 GTGTATATGAACGCTTGCGTCT 59.142 45.455 20.87 11.16 0.00 4.18
2911 3489 2.601314 TGTGTATATGAACGCTTGCGTC 59.399 45.455 20.87 14.17 0.00 5.19
2912 3490 2.347452 GTGTGTATATGAACGCTTGCGT 59.653 45.455 15.19 15.19 0.00 5.24
2913 3491 2.594269 CGTGTGTATATGAACGCTTGCG 60.594 50.000 13.70 13.70 0.00 4.85
2919 3497 3.420035 GCGTATGCGTGTGTATATGAACG 60.420 47.826 4.81 0.00 40.81 3.95
2920 3498 4.036215 GCGTATGCGTGTGTATATGAAC 57.964 45.455 4.81 0.00 40.81 3.18
2934 3512 3.053455 GTTCATAGAGGTGAGCGTATGC 58.947 50.000 0.00 0.00 43.24 3.14
2935 3513 3.300857 CGTTCATAGAGGTGAGCGTATG 58.699 50.000 5.22 1.99 44.41 2.39
2936 3514 3.627732 CGTTCATAGAGGTGAGCGTAT 57.372 47.619 5.22 0.00 44.41 3.06
2940 3518 1.281899 GTGCGTTCATAGAGGTGAGC 58.718 55.000 0.00 0.00 0.00 4.26
2941 3519 2.263077 GTGTGCGTTCATAGAGGTGAG 58.737 52.381 0.00 0.00 0.00 3.51
2942 3520 1.616374 TGTGTGCGTTCATAGAGGTGA 59.384 47.619 0.00 0.00 0.00 4.02
2943 3521 1.726791 GTGTGTGCGTTCATAGAGGTG 59.273 52.381 0.00 0.00 0.00 4.00
2944 3522 1.618837 AGTGTGTGCGTTCATAGAGGT 59.381 47.619 0.00 0.00 0.00 3.85
2945 3523 2.263077 GAGTGTGTGCGTTCATAGAGG 58.737 52.381 0.00 0.00 0.00 3.69
2946 3524 2.946564 TGAGTGTGTGCGTTCATAGAG 58.053 47.619 0.00 0.00 0.00 2.43
2947 3525 3.592898 ATGAGTGTGTGCGTTCATAGA 57.407 42.857 0.00 0.00 0.00 1.98
2948 3526 3.551890 GGTATGAGTGTGTGCGTTCATAG 59.448 47.826 0.00 0.00 34.28 2.23
2949 3527 3.517602 GGTATGAGTGTGTGCGTTCATA 58.482 45.455 0.00 0.00 32.83 2.15
2950 3528 2.346803 GGTATGAGTGTGTGCGTTCAT 58.653 47.619 0.00 0.00 34.81 2.57
2951 3529 1.606994 GGGTATGAGTGTGTGCGTTCA 60.607 52.381 0.00 0.00 0.00 3.18
2952 3530 1.076332 GGGTATGAGTGTGTGCGTTC 58.924 55.000 0.00 0.00 0.00 3.95
2953 3531 0.685097 AGGGTATGAGTGTGTGCGTT 59.315 50.000 0.00 0.00 0.00 4.84
2954 3532 1.203994 GTAGGGTATGAGTGTGTGCGT 59.796 52.381 0.00 0.00 0.00 5.24
2955 3533 1.470979 GGTAGGGTATGAGTGTGTGCG 60.471 57.143 0.00 0.00 0.00 5.34
2956 3534 1.134491 GGGTAGGGTATGAGTGTGTGC 60.134 57.143 0.00 0.00 0.00 4.57
2957 3535 1.485066 GGGGTAGGGTATGAGTGTGTG 59.515 57.143 0.00 0.00 0.00 3.82
2958 3536 1.365028 AGGGGTAGGGTATGAGTGTGT 59.635 52.381 0.00 0.00 0.00 3.72
2959 3537 2.176247 AGGGGTAGGGTATGAGTGTG 57.824 55.000 0.00 0.00 0.00 3.82
2960 3538 3.469771 TCATAGGGGTAGGGTATGAGTGT 59.530 47.826 0.00 0.00 31.14 3.55
2961 3539 4.090090 CTCATAGGGGTAGGGTATGAGTG 58.910 52.174 9.48 0.00 42.58 3.51
2962 3540 3.502488 GCTCATAGGGGTAGGGTATGAGT 60.502 52.174 16.18 0.00 46.42 3.41
2964 3542 2.453212 TGCTCATAGGGGTAGGGTATGA 59.547 50.000 0.00 0.00 33.24 2.15
2965 3543 2.567615 GTGCTCATAGGGGTAGGGTATG 59.432 54.545 0.00 0.00 0.00 2.39
2966 3544 2.494816 GGTGCTCATAGGGGTAGGGTAT 60.495 54.545 0.00 0.00 0.00 2.73
2967 3545 1.132945 GGTGCTCATAGGGGTAGGGTA 60.133 57.143 0.00 0.00 0.00 3.69
2968 3546 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
2969 3547 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
2970 3548 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
2971 3549 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
2972 3550 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
2973 3551 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
2974 3552 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
2975 3553 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
2976 3554 2.678336 GTTTTTCGGAGGTGCTCATAGG 59.322 50.000 0.00 0.00 31.08 2.57
2977 3555 3.372206 CAGTTTTTCGGAGGTGCTCATAG 59.628 47.826 0.00 0.00 31.08 2.23
2978 3556 3.007506 TCAGTTTTTCGGAGGTGCTCATA 59.992 43.478 0.00 0.00 31.08 2.15
2979 3557 2.154462 CAGTTTTTCGGAGGTGCTCAT 58.846 47.619 0.00 0.00 31.08 2.90
2980 3558 1.140052 TCAGTTTTTCGGAGGTGCTCA 59.860 47.619 0.00 0.00 31.08 4.26
2981 3559 1.801178 CTCAGTTTTTCGGAGGTGCTC 59.199 52.381 0.00 0.00 35.32 4.26
2982 3560 1.884235 CTCAGTTTTTCGGAGGTGCT 58.116 50.000 0.00 0.00 35.32 4.40
2983 3561 0.238553 GCTCAGTTTTTCGGAGGTGC 59.761 55.000 0.00 0.00 38.48 5.01
2984 3562 0.875059 GGCTCAGTTTTTCGGAGGTG 59.125 55.000 0.00 0.00 38.48 4.00
2985 3563 0.602905 CGGCTCAGTTTTTCGGAGGT 60.603 55.000 0.00 0.00 38.48 3.85
2986 3564 1.298859 CCGGCTCAGTTTTTCGGAGG 61.299 60.000 0.00 0.00 42.94 4.30
2987 3565 1.912371 GCCGGCTCAGTTTTTCGGAG 61.912 60.000 22.15 0.00 42.94 4.63
2988 3566 1.964373 GCCGGCTCAGTTTTTCGGA 60.964 57.895 22.15 0.00 42.94 4.55
2989 3567 1.586154 ATGCCGGCTCAGTTTTTCGG 61.586 55.000 29.70 0.00 43.13 4.30
2990 3568 1.083489 TATGCCGGCTCAGTTTTTCG 58.917 50.000 29.70 0.00 0.00 3.46
2991 3569 2.682856 TGATATGCCGGCTCAGTTTTTC 59.317 45.455 29.70 12.91 0.00 2.29
2992 3570 2.722094 TGATATGCCGGCTCAGTTTTT 58.278 42.857 29.70 3.35 0.00 1.94
2993 3571 2.418368 TGATATGCCGGCTCAGTTTT 57.582 45.000 29.70 5.10 0.00 2.43
2994 3572 2.105477 AGATGATATGCCGGCTCAGTTT 59.895 45.455 29.70 8.26 0.00 2.66
2995 3573 1.696336 AGATGATATGCCGGCTCAGTT 59.304 47.619 29.70 9.04 0.00 3.16
2996 3574 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
2997 3575 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
2998 3576 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
2999 3577 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
3000 3578 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
3001 3579 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
3002 3580 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
3003 3581 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
3004 3582 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
3005 3583 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
3008 3586 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
3009 3587 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
3010 3588 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
3011 3589 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
3012 3590 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
3013 3591 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
3014 3592 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
3015 3593 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
3016 3594 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
3017 3595 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
3018 3596 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
3019 3597 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
3020 3598 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
3021 3599 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
3022 3600 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
3023 3601 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
3024 3602 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
3025 3603 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
3026 3604 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
3027 3605 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
3028 3606 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
3029 3607 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
3030 3608 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
3031 3609 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
3032 3610 3.066814 GGACGAGGTGCCTACGGT 61.067 66.667 12.22 3.01 0.00 4.83
3033 3611 2.754658 AGGACGAGGTGCCTACGG 60.755 66.667 12.22 0.36 31.31 4.02
3034 3612 2.799371 GAGGACGAGGTGCCTACG 59.201 66.667 0.00 0.00 33.84 3.51
3035 3613 1.748122 TCGAGGACGAGGTGCCTAC 60.748 63.158 0.00 0.00 43.81 3.18
3036 3614 2.672908 TCGAGGACGAGGTGCCTA 59.327 61.111 0.00 0.00 43.81 3.93
3057 3635 2.814280 TTCAGTGGAAGGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
3058 3636 2.872038 GCATTCAGTGGAAGGAGACGTT 60.872 50.000 0.00 0.00 36.97 3.99
3059 3637 1.338200 GCATTCAGTGGAAGGAGACGT 60.338 52.381 0.00 0.00 36.97 4.34
3060 3638 1.363744 GCATTCAGTGGAAGGAGACG 58.636 55.000 0.00 0.00 36.97 4.18
3061 3639 1.363744 CGCATTCAGTGGAAGGAGAC 58.636 55.000 0.00 0.00 36.86 3.36
3062 3640 0.391661 GCGCATTCAGTGGAAGGAGA 60.392 55.000 0.30 0.00 36.86 3.71
3063 3641 0.674581 TGCGCATTCAGTGGAAGGAG 60.675 55.000 5.66 0.00 36.97 3.69
3064 3642 0.035152 ATGCGCATTCAGTGGAAGGA 60.035 50.000 19.28 0.00 36.97 3.36
3065 3643 0.379669 GATGCGCATTCAGTGGAAGG 59.620 55.000 26.12 0.00 37.84 3.46
3066 3644 0.027194 CGATGCGCATTCAGTGGAAG 59.973 55.000 26.12 4.12 36.25 3.46
3067 3645 2.089017 CGATGCGCATTCAGTGGAA 58.911 52.632 26.12 0.00 37.45 3.53
3068 3646 3.798380 CGATGCGCATTCAGTGGA 58.202 55.556 26.12 0.00 0.00 4.02
3079 3657 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
3080 3658 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
3081 3659 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
3082 3660 5.828299 TTTATTTCAGAATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
3083 3661 5.220970 GGATTTATTTCAGAATTTCCGGCGA 60.221 40.000 9.30 0.00 0.00 5.54
3084 3662 4.976116 GGATTTATTTCAGAATTTCCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
3085 3663 5.901552 TGGATTTATTTCAGAATTTCCGGC 58.098 37.500 0.00 0.00 0.00 6.13
3086 3664 8.770438 TTTTGGATTTATTTCAGAATTTCCGG 57.230 30.769 0.00 0.00 0.00 5.14
3101 3679 6.533367 GGTGCTCGCATTTATTTTTGGATTTA 59.467 34.615 0.00 0.00 0.00 1.40
3102 3680 5.351189 GGTGCTCGCATTTATTTTTGGATTT 59.649 36.000 0.00 0.00 0.00 2.17
3105 3683 3.256879 TGGTGCTCGCATTTATTTTTGGA 59.743 39.130 0.00 0.00 0.00 3.53
3106 3684 3.583806 TGGTGCTCGCATTTATTTTTGG 58.416 40.909 0.00 0.00 0.00 3.28
3111 3689 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
3114 3692 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
3127 3863 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
3138 3874 1.484444 GCTATCCCTAGCCCACCAGG 61.484 65.000 0.00 0.00 43.90 4.45
3139 3875 2.062070 GCTATCCCTAGCCCACCAG 58.938 63.158 0.00 0.00 43.90 4.00
3140 3876 4.313523 GCTATCCCTAGCCCACCA 57.686 61.111 0.00 0.00 43.90 4.17
3154 3890 4.473196 TGAATGGTTAGAGGGATTGTGCTA 59.527 41.667 0.00 0.00 0.00 3.49
3155 3891 3.266772 TGAATGGTTAGAGGGATTGTGCT 59.733 43.478 0.00 0.00 0.00 4.40
3156 3892 3.620488 TGAATGGTTAGAGGGATTGTGC 58.380 45.455 0.00 0.00 0.00 4.57
3157 3893 5.887598 TGATTGAATGGTTAGAGGGATTGTG 59.112 40.000 0.00 0.00 0.00 3.33
3158 3894 5.888161 GTGATTGAATGGTTAGAGGGATTGT 59.112 40.000 0.00 0.00 0.00 2.71
3160 3896 6.078456 TGTGATTGAATGGTTAGAGGGATT 57.922 37.500 0.00 0.00 0.00 3.01
3161 3897 5.398353 CCTGTGATTGAATGGTTAGAGGGAT 60.398 44.000 0.00 0.00 0.00 3.85
3162 3898 4.080356 CCTGTGATTGAATGGTTAGAGGGA 60.080 45.833 0.00 0.00 0.00 4.20
3163 3899 4.202441 CCTGTGATTGAATGGTTAGAGGG 58.798 47.826 0.00 0.00 0.00 4.30
3164 3900 4.848357 ACCTGTGATTGAATGGTTAGAGG 58.152 43.478 0.00 0.00 0.00 3.69
3165 3901 5.124457 CCAACCTGTGATTGAATGGTTAGAG 59.876 44.000 0.00 0.00 38.76 2.43
3166 3902 5.009631 CCAACCTGTGATTGAATGGTTAGA 58.990 41.667 0.00 0.00 38.76 2.10
3167 3903 4.766891 ACCAACCTGTGATTGAATGGTTAG 59.233 41.667 0.00 0.00 38.76 2.34
3168 3904 4.735369 ACCAACCTGTGATTGAATGGTTA 58.265 39.130 0.00 0.00 38.76 2.85
3170 3906 3.243359 ACCAACCTGTGATTGAATGGT 57.757 42.857 0.00 0.00 34.98 3.55
3171 3907 3.366273 CGAACCAACCTGTGATTGAATGG 60.366 47.826 0.00 0.00 0.00 3.16
3172 3908 3.825308 CGAACCAACCTGTGATTGAATG 58.175 45.455 0.00 0.00 0.00 2.67
3173 3909 2.228822 GCGAACCAACCTGTGATTGAAT 59.771 45.455 0.00 0.00 0.00 2.57
3174 3910 1.606668 GCGAACCAACCTGTGATTGAA 59.393 47.619 0.00 0.00 0.00 2.69
3175 3911 1.234821 GCGAACCAACCTGTGATTGA 58.765 50.000 0.00 0.00 0.00 2.57
3176 3912 0.950836 TGCGAACCAACCTGTGATTG 59.049 50.000 0.00 0.00 0.00 2.67
3177 3913 1.686355 TTGCGAACCAACCTGTGATT 58.314 45.000 0.00 0.00 0.00 2.57
3178 3914 1.909700 ATTGCGAACCAACCTGTGAT 58.090 45.000 0.00 0.00 35.99 3.06
3179 3915 2.422597 CTATTGCGAACCAACCTGTGA 58.577 47.619 0.00 0.00 35.99 3.58
3181 3917 1.349688 TCCTATTGCGAACCAACCTGT 59.650 47.619 0.00 0.00 35.99 4.00
3183 3919 2.871096 TTCCTATTGCGAACCAACCT 57.129 45.000 0.00 0.00 35.99 3.50
3188 3924 5.815740 TCAAGTTAGATTCCTATTGCGAACC 59.184 40.000 0.00 0.00 0.00 3.62
3190 3926 7.656137 GGTATCAAGTTAGATTCCTATTGCGAA 59.344 37.037 0.00 0.00 33.93 4.70
3191 3927 7.015292 AGGTATCAAGTTAGATTCCTATTGCGA 59.985 37.037 9.93 0.00 42.04 5.10
3192 3928 7.155328 AGGTATCAAGTTAGATTCCTATTGCG 58.845 38.462 9.93 0.00 42.04 4.85
3193 3929 8.150945 TGAGGTATCAAGTTAGATTCCTATTGC 58.849 37.037 10.99 3.78 43.32 3.56
3194 3930 9.703892 CTGAGGTATCAAGTTAGATTCCTATTG 57.296 37.037 10.99 0.00 43.32 1.90
3195 3931 8.875168 CCTGAGGTATCAAGTTAGATTCCTATT 58.125 37.037 10.99 0.00 43.32 1.73
3196 3932 8.235230 TCCTGAGGTATCAAGTTAGATTCCTAT 58.765 37.037 0.00 0.00 43.32 2.57
3197 3933 7.592736 TCCTGAGGTATCAAGTTAGATTCCTA 58.407 38.462 0.00 0.00 43.32 2.94
3198 3934 6.444704 TCCTGAGGTATCAAGTTAGATTCCT 58.555 40.000 0.00 10.89 45.16 3.36
3199 3935 6.732896 TCCTGAGGTATCAAGTTAGATTCC 57.267 41.667 0.00 0.00 36.15 3.01
3200 3936 6.987404 GGTTCCTGAGGTATCAAGTTAGATTC 59.013 42.308 0.00 0.00 34.23 2.52
3201 3937 6.407074 CGGTTCCTGAGGTATCAAGTTAGATT 60.407 42.308 0.00 0.00 34.23 2.40
3204 3940 4.159879 ACGGTTCCTGAGGTATCAAGTTAG 59.840 45.833 0.00 0.00 34.23 2.34
3205 3941 4.091549 ACGGTTCCTGAGGTATCAAGTTA 58.908 43.478 0.00 0.00 34.23 2.24
3206 3942 2.904434 ACGGTTCCTGAGGTATCAAGTT 59.096 45.455 0.00 0.00 34.23 2.66
3207 3943 2.496470 GACGGTTCCTGAGGTATCAAGT 59.504 50.000 0.00 0.00 34.23 3.16
3208 3944 2.479730 CGACGGTTCCTGAGGTATCAAG 60.480 54.545 0.00 0.00 34.23 3.02
3209 3945 1.475280 CGACGGTTCCTGAGGTATCAA 59.525 52.381 0.00 0.00 34.23 2.57
3210 3946 1.100510 CGACGGTTCCTGAGGTATCA 58.899 55.000 0.00 0.00 0.00 2.15
3212 3948 0.324091 ACCGACGGTTCCTGAGGTAT 60.324 55.000 15.37 0.00 27.29 2.73
3213 3949 0.540365 AACCGACGGTTCCTGAGGTA 60.540 55.000 26.36 0.00 43.05 3.08
3214 3950 0.540365 TAACCGACGGTTCCTGAGGT 60.540 55.000 34.23 12.12 43.05 3.85
3215 3951 0.108945 GTAACCGACGGTTCCTGAGG 60.109 60.000 34.23 0.00 43.05 3.86
3217 3953 0.540365 AGGTAACCGACGGTTCCTGA 60.540 55.000 34.23 15.57 43.05 3.86
3218 3954 0.319405 AAGGTAACCGACGGTTCCTG 59.681 55.000 32.81 7.95 43.05 3.86
3219 3955 0.319405 CAAGGTAACCGACGGTTCCT 59.681 55.000 34.23 31.40 43.05 3.36
3220 3956 0.318120 TCAAGGTAACCGACGGTTCC 59.682 55.000 34.23 29.98 43.05 3.62
3225 3961 0.822164 AGGGATCAAGGTAACCGACG 59.178 55.000 0.00 0.00 37.17 5.12
3286 4022 0.178961 AAACCAGGGGACAAAGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
3288 4024 5.128008 TGTTTTAAAACCAGGGGACAAAGAG 59.872 40.000 24.55 0.00 38.11 2.85
3289 4025 5.024118 TGTTTTAAAACCAGGGGACAAAGA 58.976 37.500 24.55 2.32 38.11 2.52
3290 4026 5.346181 TGTTTTAAAACCAGGGGACAAAG 57.654 39.130 24.55 0.00 38.11 2.77
3291 4027 5.757099 TTGTTTTAAAACCAGGGGACAAA 57.243 34.783 24.55 9.04 38.11 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.