Multiple sequence alignment - TraesCS3B01G138800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G138800 chr3B 100.000 2901 0 0 1 2901 124822463 124819563 0.000000e+00 5358
1 TraesCS3B01G138800 chr3B 91.605 1620 103 23 3 1606 124357405 124355803 0.000000e+00 2207
2 TraesCS3B01G138800 chr3B 91.411 1630 98 26 3 1606 124493375 124491762 0.000000e+00 2196
3 TraesCS3B01G138800 chr3B 91.411 1630 98 23 3 1606 124552170 124550557 0.000000e+00 2196
4 TraesCS3B01G138800 chr3B 90.383 915 63 15 1601 2509 124550504 124549609 0.000000e+00 1179
5 TraesCS3B01G138800 chr3B 90.164 915 65 15 1601 2509 124491709 124490814 0.000000e+00 1168
6 TraesCS3B01G138800 chr3B 89.482 599 42 14 1601 2196 124355750 124355170 0.000000e+00 737
7 TraesCS3B01G138800 chr3B 85.339 723 94 8 1610 2323 124406945 124406226 0.000000e+00 737
8 TraesCS3B01G138800 chr3B 83.696 736 100 13 1610 2336 124579066 124578342 0.000000e+00 676
9 TraesCS3B01G138800 chr3B 86.735 392 42 10 2509 2896 120407105 120407490 7.430000e-116 427
10 TraesCS3B01G138800 chr3B 82.133 375 59 5 3 372 124409233 124408862 6.030000e-82 315
11 TraesCS3B01G138800 chr3D 92.590 1606 85 13 9 1606 79247529 79245950 0.000000e+00 2276
12 TraesCS3B01G138800 chr3D 90.833 1069 75 7 545 1606 79300273 79299221 0.000000e+00 1410
13 TraesCS3B01G138800 chr3D 92.048 918 63 7 1601 2509 79245897 79244981 0.000000e+00 1282
14 TraesCS3B01G138800 chr3D 91.254 949 60 7 665 1606 78945266 78944334 0.000000e+00 1271
15 TraesCS3B01G138800 chr3D 90.710 915 78 5 1601 2509 78944281 78943368 0.000000e+00 1212
16 TraesCS3B01G138800 chr3D 93.559 621 33 7 5 624 78945878 78945264 0.000000e+00 918
17 TraesCS3B01G138800 chr3D 93.345 586 39 0 1601 2186 79299168 79298583 0.000000e+00 867
18 TraesCS3B01G138800 chr3D 92.840 419 27 3 9 426 79300688 79300272 3.200000e-169 604
19 TraesCS3B01G138800 chr3D 88.254 315 30 3 2201 2509 79296270 79295957 1.270000e-98 370
20 TraesCS3B01G138800 chr3D 85.366 164 24 0 2346 2509 79290921 79290758 1.380000e-38 171
21 TraesCS3B01G138800 chr3A 91.574 1614 103 14 5 1606 92540823 92539231 0.000000e+00 2196
22 TraesCS3B01G138800 chr3A 91.528 1204 73 11 413 1606 92569541 92568357 0.000000e+00 1631
23 TraesCS3B01G138800 chr3A 92.308 910 67 3 1601 2509 92539176 92538269 0.000000e+00 1290
24 TraesCS3B01G138800 chr3A 91.868 910 69 4 1601 2509 92568302 92567397 0.000000e+00 1266
25 TraesCS3B01G138800 chr3A 86.035 401 47 9 2502 2896 743462634 743462237 3.460000e-114 422
26 TraesCS3B01G138800 chrUn 79.496 1190 187 36 360 1521 376977031 376978191 0.000000e+00 793
27 TraesCS3B01G138800 chrUn 86.889 389 48 2 2509 2896 293811116 293811502 1.600000e-117 433
28 TraesCS3B01G138800 chrUn 86.632 389 49 2 2509 2896 270107391 270107777 7.430000e-116 427
29 TraesCS3B01G138800 chrUn 89.668 271 20 5 1343 1606 477363539 477363808 3.580000e-89 339
30 TraesCS3B01G138800 chr1B 76.168 1284 215 53 360 1606 25569315 25570544 2.490000e-165 592
31 TraesCS3B01G138800 chr7D 87.467 383 44 4 2515 2896 511940030 511939651 3.430000e-119 438
32 TraesCS3B01G138800 chr7D 86.889 389 47 3 2509 2896 182610315 182610700 1.600000e-117 433
33 TraesCS3B01G138800 chr5B 86.889 389 48 2 2509 2896 507077535 507077921 1.600000e-117 433
34 TraesCS3B01G138800 chr2B 87.047 386 44 6 2515 2895 733146184 733145800 5.740000e-117 431
35 TraesCS3B01G138800 chr5D 87.173 382 44 3 2515 2894 135516955 135516577 2.070000e-116 429
36 TraesCS3B01G138800 chr7A 87.363 182 20 2 3 183 180842849 180843028 3.790000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G138800 chr3B 124819563 124822463 2900 True 5358.000000 5358 100.0000 1 2901 1 chr3B.!!$R2 2900
1 TraesCS3B01G138800 chr3B 124549609 124552170 2561 True 1687.500000 2196 90.8970 3 2509 2 chr3B.!!$R6 2506
2 TraesCS3B01G138800 chr3B 124490814 124493375 2561 True 1682.000000 2196 90.7875 3 2509 2 chr3B.!!$R5 2506
3 TraesCS3B01G138800 chr3B 124355170 124357405 2235 True 1472.000000 2207 90.5435 3 2196 2 chr3B.!!$R3 2193
4 TraesCS3B01G138800 chr3B 124578342 124579066 724 True 676.000000 676 83.6960 1610 2336 1 chr3B.!!$R1 726
5 TraesCS3B01G138800 chr3B 124406226 124409233 3007 True 526.000000 737 83.7360 3 2323 2 chr3B.!!$R4 2320
6 TraesCS3B01G138800 chr3D 79244981 79247529 2548 True 1779.000000 2276 92.3190 9 2509 2 chr3D.!!$R3 2500
7 TraesCS3B01G138800 chr3D 78943368 78945878 2510 True 1133.666667 1271 91.8410 5 2509 3 chr3D.!!$R2 2504
8 TraesCS3B01G138800 chr3D 79295957 79300688 4731 True 812.750000 1410 91.3180 9 2509 4 chr3D.!!$R4 2500
9 TraesCS3B01G138800 chr3A 92538269 92540823 2554 True 1743.000000 2196 91.9410 5 2509 2 chr3A.!!$R2 2504
10 TraesCS3B01G138800 chr3A 92567397 92569541 2144 True 1448.500000 1631 91.6980 413 2509 2 chr3A.!!$R3 2096
11 TraesCS3B01G138800 chrUn 376977031 376978191 1160 False 793.000000 793 79.4960 360 1521 1 chrUn.!!$F3 1161
12 TraesCS3B01G138800 chr1B 25569315 25570544 1229 False 592.000000 592 76.1680 360 1606 1 chr1B.!!$F1 1246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 309 3.98273 TCCACCATGGAGTGAATGGATAT 59.017 43.478 21.47 0.0 46.44 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 2889 0.03601 ATCCCAAAGCCACTCACTCG 60.036 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 134 4.142315 CCGAATTTGTAAGGAGGACGACTA 60.142 45.833 0.00 0.00 0.00 2.59
133 135 5.451520 CCGAATTTGTAAGGAGGACGACTAT 60.452 44.000 0.00 0.00 0.00 2.12
303 309 3.982730 TCCACCATGGAGTGAATGGATAT 59.017 43.478 21.47 0.00 46.44 1.63
418 485 6.930731 TGTATTATCGTGCCTATGATGCTAA 58.069 36.000 0.00 0.00 34.46 3.09
445 512 8.829373 ATTTATGGCTAATATGATTTCCCTCC 57.171 34.615 0.00 0.00 0.00 4.30
524 1151 8.644374 TCTTATTGTATGTAAGGCCTTGTTTT 57.356 30.769 28.77 12.20 31.59 2.43
702 1349 8.204836 AGTAATCAGTGGTAGGTAATCATGAAC 58.795 37.037 0.00 0.00 0.00 3.18
803 1455 9.039870 GTCTAGGAAACTCATACAGATGAATTG 57.960 37.037 0.00 0.00 41.62 2.32
892 1559 7.303998 ACTACGTTAGCAACTAAAGTCTACTG 58.696 38.462 8.81 1.31 38.90 2.74
969 1641 9.465985 GCTACCTTTAACTCTATACATGAGAAC 57.534 37.037 0.00 0.00 35.66 3.01
1058 1733 4.620567 GCAAAATATGTTGGACCCCTTCAC 60.621 45.833 7.74 0.00 0.00 3.18
1066 1741 1.603739 GACCCCTTCACCACAAGCC 60.604 63.158 0.00 0.00 0.00 4.35
1153 1834 0.943673 CAACACTGACGATGCCAACA 59.056 50.000 0.00 0.00 0.00 3.33
1176 1857 0.386476 CTGCTGCAGACAAAGGCAAA 59.614 50.000 24.88 0.00 39.93 3.68
1182 1863 4.692155 GCTGCAGACAAAGGCAAAAATAAT 59.308 37.500 20.43 0.00 39.93 1.28
1195 1876 5.221322 GGCAAAAATAATGATGGAGAGACCC 60.221 44.000 0.00 0.00 38.00 4.46
1196 1877 5.360714 GCAAAAATAATGATGGAGAGACCCA 59.639 40.000 0.00 0.00 41.05 4.51
1198 1879 7.231317 GCAAAAATAATGATGGAGAGACCCATA 59.769 37.037 0.00 0.00 46.34 2.74
1199 1880 8.571336 CAAAAATAATGATGGAGAGACCCATAC 58.429 37.037 0.00 0.00 46.34 2.39
1200 1881 7.639062 AAATAATGATGGAGAGACCCATACT 57.361 36.000 0.00 0.00 46.34 2.12
1209 1890 5.162936 TGGAGAGACCCATACTCATAGTGAT 60.163 44.000 0.00 0.00 36.91 3.06
1234 1915 4.947147 TGGTGACAAGGCGTGCCC 62.947 66.667 7.39 0.00 37.44 5.36
1395 2076 3.181461 CCTTTATCCAGATGCGGAACTCT 60.181 47.826 0.00 0.00 38.95 3.24
1432 2113 2.401766 GGCTTGACATGAGTGCCCG 61.402 63.158 0.00 0.00 37.81 6.13
1520 2217 5.961843 CACAGTGAATTACATGAGATTTCGC 59.038 40.000 0.00 6.15 0.00 4.70
1521 2218 5.877012 ACAGTGAATTACATGAGATTTCGCT 59.123 36.000 0.00 8.20 0.00 4.93
1522 2219 7.010460 CACAGTGAATTACATGAGATTTCGCTA 59.990 37.037 0.00 0.00 0.00 4.26
1523 2220 7.712639 ACAGTGAATTACATGAGATTTCGCTAT 59.287 33.333 0.00 0.00 0.00 2.97
1524 2221 9.196552 CAGTGAATTACATGAGATTTCGCTATA 57.803 33.333 0.00 0.00 0.00 1.31
1525 2222 9.935241 AGTGAATTACATGAGATTTCGCTATAT 57.065 29.630 0.00 0.00 0.00 0.86
1578 2277 9.382244 CAGCTATGAAGTTTTACTGTTAAACAC 57.618 33.333 20.39 14.91 37.83 3.32
1608 2370 6.959361 ACTCCACTAAAAATATTAGCATGCG 58.041 36.000 13.01 0.00 0.00 4.73
1632 2395 7.625606 GCGTACTTTGCTAACCACTAAAATGAT 60.626 37.037 0.00 0.00 0.00 2.45
1694 2457 3.648067 ACAGGACACCAAGAATCTTCAGA 59.352 43.478 0.00 0.00 0.00 3.27
1792 2555 3.826157 CAGGGGTGATGCTAAAAACTCAA 59.174 43.478 0.00 0.00 0.00 3.02
1793 2556 4.280677 CAGGGGTGATGCTAAAAACTCAAA 59.719 41.667 0.00 0.00 0.00 2.69
1818 2581 3.050275 GGAGCACCAACGCCTGTC 61.050 66.667 0.00 0.00 35.97 3.51
1821 2584 0.737715 GAGCACCAACGCCTGTCTAG 60.738 60.000 0.00 0.00 0.00 2.43
1832 2595 4.465886 ACGCCTGTCTAGAGAGAATATGT 58.534 43.478 18.16 6.14 31.96 2.29
1899 2664 3.319972 GGTCTCTACCGTAATGGCATGTA 59.680 47.826 0.00 0.00 43.94 2.29
1936 2701 3.251729 ACGACTAAGCACAACGTCTTCTA 59.748 43.478 0.00 0.00 31.69 2.10
1947 2712 6.090898 GCACAACGTCTTCTATGTTAGTCAAT 59.909 38.462 0.00 0.00 35.49 2.57
1950 2715 9.302345 ACAACGTCTTCTATGTTAGTCAATATG 57.698 33.333 0.00 0.00 35.49 1.78
1965 2730 6.851222 GTCAATATGACATGAACCCTAGTG 57.149 41.667 0.00 0.00 46.22 2.74
1996 2761 1.742831 CCTTGGCTAGCAAATAACGCA 59.257 47.619 18.24 0.00 0.00 5.24
2116 2889 0.319813 GCAGCAATGTTGGGGTTGTC 60.320 55.000 0.00 0.00 0.00 3.18
2158 2931 0.254178 ATTGCCATGAAGCTCGGTCT 59.746 50.000 0.00 0.00 0.00 3.85
2159 2932 0.391661 TTGCCATGAAGCTCGGTCTC 60.392 55.000 0.00 0.00 0.00 3.36
2168 2941 0.529833 AGCTCGGTCTCACTCATGTG 59.470 55.000 0.00 0.00 45.07 3.21
2189 2963 6.843752 TGTGTTTCTCCCTTCCTATTTGTAA 58.156 36.000 0.00 0.00 0.00 2.41
2198 2972 4.578928 CCTTCCTATTTGTAACCGAATGGG 59.421 45.833 0.00 0.00 42.01 4.00
2234 5312 5.691754 CCAAGTGAATAGACAAGCAAAAACC 59.308 40.000 0.00 0.00 0.00 3.27
2263 5342 1.068610 GCTAGTTGAATGCCGCACAAA 60.069 47.619 0.00 0.00 0.00 2.83
2326 5405 8.887717 GTGTCATTCATTGAGATAGCTTTTACT 58.112 33.333 0.00 0.00 34.17 2.24
2338 5417 8.729805 AGATAGCTTTTACTTTCATCCTTCTG 57.270 34.615 0.00 0.00 0.00 3.02
2344 5423 2.800250 ACTTTCATCCTTCTGGGCAAG 58.200 47.619 0.00 0.00 34.39 4.01
2359 5443 4.415596 TGGGCAAGAAAAAGTGGTATGAT 58.584 39.130 0.00 0.00 0.00 2.45
2388 5472 1.246737 CCTGTTCTGGAGCCTTTGCC 61.247 60.000 0.00 0.00 38.69 4.52
2399 5484 2.353610 CCTTTGCCTGCCATCCACC 61.354 63.158 0.00 0.00 0.00 4.61
2410 5497 1.691196 CCATCCACCACACACACTTT 58.309 50.000 0.00 0.00 0.00 2.66
2462 5557 0.391661 GCTGGATGACACGGACATGT 60.392 55.000 0.00 0.00 34.78 3.21
2468 5563 1.447838 GACACGGACATGTGGCGAT 60.448 57.895 1.15 0.00 44.21 4.58
2501 5600 4.602340 AGTACAGAATTCAGTGAACCGT 57.398 40.909 13.30 5.71 0.00 4.83
2517 5616 2.853731 CCGTATGGTCAGAGTCACTC 57.146 55.000 0.00 0.00 0.00 3.51
2518 5617 1.405821 CCGTATGGTCAGAGTCACTCC 59.594 57.143 0.00 0.00 0.00 3.85
2519 5618 2.092323 CGTATGGTCAGAGTCACTCCA 58.908 52.381 0.00 0.00 0.00 3.86
2520 5619 2.492088 CGTATGGTCAGAGTCACTCCAA 59.508 50.000 0.00 0.00 0.00 3.53
2521 5620 3.673594 CGTATGGTCAGAGTCACTCCAAC 60.674 52.174 0.00 0.00 0.00 3.77
2522 5621 0.673985 TGGTCAGAGTCACTCCAACG 59.326 55.000 0.00 0.00 0.00 4.10
2523 5622 0.038159 GGTCAGAGTCACTCCAACGG 60.038 60.000 0.00 0.00 0.00 4.44
2524 5623 0.038159 GTCAGAGTCACTCCAACGGG 60.038 60.000 0.00 0.00 0.00 5.28
2525 5624 1.374758 CAGAGTCACTCCAACGGGC 60.375 63.158 0.00 0.00 0.00 6.13
2526 5625 2.047179 GAGTCACTCCAACGGGCC 60.047 66.667 0.00 0.00 0.00 5.80
2527 5626 3.934391 GAGTCACTCCAACGGGCCG 62.934 68.421 27.06 27.06 0.00 6.13
2528 5627 3.998672 GTCACTCCAACGGGCCGA 61.999 66.667 35.78 9.29 0.00 5.54
2529 5628 3.998672 TCACTCCAACGGGCCGAC 61.999 66.667 35.78 0.00 0.00 4.79
2532 5631 4.323477 CTCCAACGGGCCGACCAA 62.323 66.667 35.78 14.06 40.22 3.67
2533 5632 3.835790 CTCCAACGGGCCGACCAAA 62.836 63.158 35.78 12.55 40.22 3.28
2534 5633 2.675075 CCAACGGGCCGACCAAAT 60.675 61.111 35.78 5.60 40.22 2.32
2535 5634 2.566010 CAACGGGCCGACCAAATG 59.434 61.111 35.78 16.34 40.22 2.32
2536 5635 2.675075 AACGGGCCGACCAAATGG 60.675 61.111 35.78 0.00 40.22 3.16
2537 5636 3.198953 AACGGGCCGACCAAATGGA 62.199 57.895 35.78 0.00 40.22 3.41
2538 5637 3.131478 CGGGCCGACCAAATGGAC 61.131 66.667 24.41 0.00 40.22 4.02
2543 5642 2.433491 CGACCAAATGGACGGCGA 60.433 61.111 16.62 0.00 46.58 5.54
2544 5643 2.030401 CGACCAAATGGACGGCGAA 61.030 57.895 16.62 0.00 46.58 4.70
2545 5644 1.366111 CGACCAAATGGACGGCGAAT 61.366 55.000 16.62 0.55 46.58 3.34
2546 5645 0.808755 GACCAAATGGACGGCGAATT 59.191 50.000 16.62 7.68 38.94 2.17
2547 5646 1.201414 GACCAAATGGACGGCGAATTT 59.799 47.619 16.62 13.52 38.94 1.82
2548 5647 1.067915 ACCAAATGGACGGCGAATTTG 60.068 47.619 25.62 25.62 39.77 2.32
2549 5648 1.067915 CCAAATGGACGGCGAATTTGT 60.068 47.619 27.80 6.05 38.87 2.83
2550 5649 2.250188 CAAATGGACGGCGAATTTGTC 58.750 47.619 24.91 10.53 36.81 3.18
2558 5657 3.472263 GCGAATTTGTCCGCTTTGT 57.528 47.368 0.00 0.00 46.96 2.83
2559 5658 1.766069 GCGAATTTGTCCGCTTTGTT 58.234 45.000 0.00 0.00 46.96 2.83
2560 5659 2.124122 GCGAATTTGTCCGCTTTGTTT 58.876 42.857 0.00 0.00 46.96 2.83
2561 5660 2.538037 GCGAATTTGTCCGCTTTGTTTT 59.462 40.909 0.00 0.00 46.96 2.43
2562 5661 3.000825 GCGAATTTGTCCGCTTTGTTTTT 59.999 39.130 0.00 0.00 46.96 1.94
2563 5662 4.504385 CGAATTTGTCCGCTTTGTTTTTG 58.496 39.130 0.00 0.00 0.00 2.44
2564 5663 4.032331 CGAATTTGTCCGCTTTGTTTTTGT 59.968 37.500 0.00 0.00 0.00 2.83
2565 5664 5.445275 CGAATTTGTCCGCTTTGTTTTTGTT 60.445 36.000 0.00 0.00 0.00 2.83
2566 5665 5.871465 ATTTGTCCGCTTTGTTTTTGTTT 57.129 30.435 0.00 0.00 0.00 2.83
2567 5666 4.653806 TTGTCCGCTTTGTTTTTGTTTG 57.346 36.364 0.00 0.00 0.00 2.93
2568 5667 2.996621 TGTCCGCTTTGTTTTTGTTTGG 59.003 40.909 0.00 0.00 0.00 3.28
2569 5668 3.254892 GTCCGCTTTGTTTTTGTTTGGA 58.745 40.909 0.00 0.00 0.00 3.53
2570 5669 3.868661 GTCCGCTTTGTTTTTGTTTGGAT 59.131 39.130 0.00 0.00 0.00 3.41
2571 5670 4.026062 GTCCGCTTTGTTTTTGTTTGGATC 60.026 41.667 0.00 0.00 0.00 3.36
2572 5671 3.060607 CCGCTTTGTTTTTGTTTGGATCG 60.061 43.478 0.00 0.00 0.00 3.69
2573 5672 3.060607 CGCTTTGTTTTTGTTTGGATCGG 60.061 43.478 0.00 0.00 0.00 4.18
2574 5673 3.868661 GCTTTGTTTTTGTTTGGATCGGT 59.131 39.130 0.00 0.00 0.00 4.69
2575 5674 4.026062 GCTTTGTTTTTGTTTGGATCGGTC 60.026 41.667 0.00 0.00 0.00 4.79
2576 5675 3.341857 TGTTTTTGTTTGGATCGGTCG 57.658 42.857 0.00 0.00 0.00 4.79
2577 5676 2.033550 TGTTTTTGTTTGGATCGGTCGG 59.966 45.455 0.00 0.00 0.00 4.79
2578 5677 0.594110 TTTTGTTTGGATCGGTCGGC 59.406 50.000 0.00 0.00 0.00 5.54
2579 5678 1.238625 TTTGTTTGGATCGGTCGGCC 61.239 55.000 0.00 0.00 0.00 6.13
2598 5697 3.055719 CCCGGCGTCTGCAATGTT 61.056 61.111 6.01 0.00 45.35 2.71
2599 5698 2.625823 CCCGGCGTCTGCAATGTTT 61.626 57.895 6.01 0.00 45.35 2.83
2600 5699 1.285641 CCGGCGTCTGCAATGTTTT 59.714 52.632 6.01 0.00 45.35 2.43
2601 5700 0.519519 CCGGCGTCTGCAATGTTTTA 59.480 50.000 6.01 0.00 45.35 1.52
2602 5701 1.465689 CCGGCGTCTGCAATGTTTTAG 60.466 52.381 6.01 0.00 45.35 1.85
2603 5702 1.463056 CGGCGTCTGCAATGTTTTAGA 59.537 47.619 0.00 0.00 45.35 2.10
2604 5703 2.095853 CGGCGTCTGCAATGTTTTAGAT 59.904 45.455 0.00 0.00 45.35 1.98
2605 5704 3.426159 CGGCGTCTGCAATGTTTTAGATT 60.426 43.478 0.00 0.00 45.35 2.40
2606 5705 4.485163 GGCGTCTGCAATGTTTTAGATTT 58.515 39.130 0.00 0.00 45.35 2.17
2607 5706 4.324402 GGCGTCTGCAATGTTTTAGATTTG 59.676 41.667 0.00 0.00 45.35 2.32
2608 5707 4.324402 GCGTCTGCAATGTTTTAGATTTGG 59.676 41.667 0.00 0.00 42.15 3.28
2609 5708 4.858692 CGTCTGCAATGTTTTAGATTTGGG 59.141 41.667 0.00 0.00 0.00 4.12
2610 5709 5.564651 CGTCTGCAATGTTTTAGATTTGGGT 60.565 40.000 0.00 0.00 0.00 4.51
2611 5710 5.863935 GTCTGCAATGTTTTAGATTTGGGTC 59.136 40.000 0.00 0.00 0.00 4.46
2612 5711 4.804108 TGCAATGTTTTAGATTTGGGTCG 58.196 39.130 0.00 0.00 0.00 4.79
2613 5712 4.173256 GCAATGTTTTAGATTTGGGTCGG 58.827 43.478 0.00 0.00 0.00 4.79
2614 5713 4.173256 CAATGTTTTAGATTTGGGTCGGC 58.827 43.478 0.00 0.00 0.00 5.54
2615 5714 2.865079 TGTTTTAGATTTGGGTCGGCA 58.135 42.857 0.00 0.00 0.00 5.69
2616 5715 2.817258 TGTTTTAGATTTGGGTCGGCAG 59.183 45.455 0.00 0.00 0.00 4.85
2617 5716 2.817844 GTTTTAGATTTGGGTCGGCAGT 59.182 45.455 0.00 0.00 0.00 4.40
2618 5717 2.107950 TTAGATTTGGGTCGGCAGTG 57.892 50.000 0.00 0.00 0.00 3.66
2619 5718 0.392461 TAGATTTGGGTCGGCAGTGC 60.392 55.000 6.55 6.55 0.00 4.40
2620 5719 3.039202 GATTTGGGTCGGCAGTGCG 62.039 63.158 9.45 4.79 0.00 5.34
2621 5720 3.842925 ATTTGGGTCGGCAGTGCGT 62.843 57.895 9.45 0.00 0.00 5.24
2622 5721 4.980805 TTGGGTCGGCAGTGCGTC 62.981 66.667 9.45 1.64 0.00 5.19
2625 5724 4.980805 GGTCGGCAGTGCGTCCAA 62.981 66.667 9.45 0.00 0.00 3.53
2626 5725 3.712881 GTCGGCAGTGCGTCCAAC 61.713 66.667 9.45 0.00 0.00 3.77
2629 5728 4.012895 GGCAGTGCGTCCAACGTG 62.013 66.667 9.45 0.00 44.73 4.49
2630 5729 3.269347 GCAGTGCGTCCAACGTGT 61.269 61.111 0.00 0.00 44.73 4.49
2631 5730 2.928361 CAGTGCGTCCAACGTGTC 59.072 61.111 0.00 0.00 44.73 3.67
2632 5731 2.657296 AGTGCGTCCAACGTGTCG 60.657 61.111 0.00 0.00 44.73 4.35
2633 5732 2.656007 GTGCGTCCAACGTGTCGA 60.656 61.111 0.00 0.00 44.73 4.20
2634 5733 2.656007 TGCGTCCAACGTGTCGAC 60.656 61.111 9.11 9.11 44.73 4.20
2635 5734 3.400590 GCGTCCAACGTGTCGACC 61.401 66.667 14.12 3.43 44.73 4.79
2636 5735 2.732094 CGTCCAACGTGTCGACCC 60.732 66.667 14.12 0.00 36.74 4.46
2637 5736 2.418356 GTCCAACGTGTCGACCCA 59.582 61.111 14.12 0.00 0.00 4.51
2638 5737 1.663702 GTCCAACGTGTCGACCCAG 60.664 63.158 14.12 6.78 0.00 4.45
2639 5738 2.129146 TCCAACGTGTCGACCCAGT 61.129 57.895 14.12 7.47 0.00 4.00
2640 5739 1.227438 CCAACGTGTCGACCCAGTT 60.227 57.895 14.12 13.17 0.00 3.16
2641 5740 1.219522 CCAACGTGTCGACCCAGTTC 61.220 60.000 14.12 0.00 0.00 3.01
2642 5741 0.528901 CAACGTGTCGACCCAGTTCA 60.529 55.000 14.12 0.00 0.00 3.18
2643 5742 0.391597 AACGTGTCGACCCAGTTCAT 59.608 50.000 14.12 0.00 0.00 2.57
2644 5743 1.250328 ACGTGTCGACCCAGTTCATA 58.750 50.000 14.12 0.00 0.00 2.15
2645 5744 1.822990 ACGTGTCGACCCAGTTCATAT 59.177 47.619 14.12 0.00 0.00 1.78
2646 5745 2.159282 ACGTGTCGACCCAGTTCATATC 60.159 50.000 14.12 0.00 0.00 1.63
2647 5746 2.798499 CGTGTCGACCCAGTTCATATCC 60.798 54.545 14.12 0.00 0.00 2.59
2648 5747 1.407618 TGTCGACCCAGTTCATATCCG 59.592 52.381 14.12 0.00 0.00 4.18
2649 5748 0.387929 TCGACCCAGTTCATATCCGC 59.612 55.000 0.00 0.00 0.00 5.54
2650 5749 0.104120 CGACCCAGTTCATATCCGCA 59.896 55.000 0.00 0.00 0.00 5.69
2651 5750 1.583054 GACCCAGTTCATATCCGCAC 58.417 55.000 0.00 0.00 0.00 5.34
2652 5751 1.139058 GACCCAGTTCATATCCGCACT 59.861 52.381 0.00 0.00 0.00 4.40
2653 5752 1.139058 ACCCAGTTCATATCCGCACTC 59.861 52.381 0.00 0.00 0.00 3.51
2654 5753 1.138859 CCCAGTTCATATCCGCACTCA 59.861 52.381 0.00 0.00 0.00 3.41
2655 5754 2.419990 CCCAGTTCATATCCGCACTCAA 60.420 50.000 0.00 0.00 0.00 3.02
2656 5755 2.609459 CCAGTTCATATCCGCACTCAAC 59.391 50.000 0.00 0.00 0.00 3.18
2657 5756 3.525537 CAGTTCATATCCGCACTCAACT 58.474 45.455 0.00 0.00 0.00 3.16
2658 5757 3.935203 CAGTTCATATCCGCACTCAACTT 59.065 43.478 0.00 0.00 0.00 2.66
2659 5758 4.393062 CAGTTCATATCCGCACTCAACTTT 59.607 41.667 0.00 0.00 0.00 2.66
2660 5759 5.003804 AGTTCATATCCGCACTCAACTTTT 58.996 37.500 0.00 0.00 0.00 2.27
2661 5760 5.473504 AGTTCATATCCGCACTCAACTTTTT 59.526 36.000 0.00 0.00 0.00 1.94
2678 5777 0.599060 TTTTTAAGAAAGGCCCGCGG 59.401 50.000 21.04 21.04 0.00 6.46
2696 5795 3.433319 CTGATCATGCCAGCAGCC 58.567 61.111 0.00 0.00 42.71 4.85
2697 5796 1.453197 CTGATCATGCCAGCAGCCA 60.453 57.895 0.00 0.00 42.71 4.75
2698 5797 0.823769 CTGATCATGCCAGCAGCCAT 60.824 55.000 0.00 0.00 42.71 4.40
2699 5798 1.106944 TGATCATGCCAGCAGCCATG 61.107 55.000 0.00 4.23 42.71 3.66
2700 5799 1.076265 ATCATGCCAGCAGCCATGT 60.076 52.632 9.24 0.00 42.71 3.21
2701 5800 1.107538 ATCATGCCAGCAGCCATGTC 61.108 55.000 9.24 0.00 42.71 3.06
2702 5801 1.753078 CATGCCAGCAGCCATGTCT 60.753 57.895 0.00 0.00 42.71 3.41
2703 5802 1.453379 ATGCCAGCAGCCATGTCTC 60.453 57.895 0.00 0.00 42.71 3.36
2704 5803 2.045634 GCCAGCAGCCATGTCTCA 60.046 61.111 0.00 0.00 34.35 3.27
2705 5804 1.453379 GCCAGCAGCCATGTCTCAT 60.453 57.895 0.00 0.00 34.35 2.90
2706 5805 1.725557 GCCAGCAGCCATGTCTCATG 61.726 60.000 3.11 3.11 34.35 3.07
2707 5806 1.725557 CCAGCAGCCATGTCTCATGC 61.726 60.000 4.43 0.00 37.15 4.06
2708 5807 1.608154 AGCAGCCATGTCTCATGCT 59.392 52.632 4.43 0.00 42.18 3.79
2710 5809 2.405143 CAGCCATGTCTCATGCTGG 58.595 57.895 17.58 5.41 45.69 4.85
2711 5810 3.117372 GCCATGTCTCATGCTGGC 58.883 61.111 4.43 0.00 46.54 4.85
2712 5811 4.649845 CCATGTCTCATGCTGGCA 57.350 55.556 0.00 0.00 0.00 4.92
2713 5812 2.104267 CCATGTCTCATGCTGGCAC 58.896 57.895 0.00 0.00 0.00 5.01
2714 5813 1.381928 CCATGTCTCATGCTGGCACC 61.382 60.000 0.00 0.00 0.00 5.01
2715 5814 0.678684 CATGTCTCATGCTGGCACCA 60.679 55.000 0.00 0.00 0.00 4.17
2716 5815 0.257905 ATGTCTCATGCTGGCACCAT 59.742 50.000 0.00 0.00 0.00 3.55
2717 5816 0.678684 TGTCTCATGCTGGCACCATG 60.679 55.000 15.19 15.19 41.03 3.66
2718 5817 1.751544 TCTCATGCTGGCACCATGC 60.752 57.895 16.28 3.77 44.08 4.06
2735 5834 2.901840 CCAGCGCCGGCATACAAT 60.902 61.111 28.98 1.24 43.41 2.71
2736 5835 2.328989 CAGCGCCGGCATACAATG 59.671 61.111 28.98 9.29 43.41 2.82
2747 5846 2.937469 CATACAATGCCGGCTTCAAA 57.063 45.000 29.70 7.00 0.00 2.69
2748 5847 3.229276 CATACAATGCCGGCTTCAAAA 57.771 42.857 29.70 6.08 0.00 2.44
2749 5848 3.583806 CATACAATGCCGGCTTCAAAAA 58.416 40.909 29.70 5.17 0.00 1.94
2769 5868 6.594788 AAAAATATCACCACAGTTCATGCT 57.405 33.333 0.00 0.00 0.00 3.79
2770 5869 5.571784 AAATATCACCACAGTTCATGCTG 57.428 39.130 0.00 0.00 41.92 4.41
2771 5870 1.830279 ATCACCACAGTTCATGCTGG 58.170 50.000 5.48 0.00 40.59 4.85
2772 5871 0.473755 TCACCACAGTTCATGCTGGT 59.526 50.000 5.48 0.45 41.26 4.00
2773 5872 0.594602 CACCACAGTTCATGCTGGTG 59.405 55.000 3.43 3.43 45.77 4.17
2774 5873 1.174712 ACCACAGTTCATGCTGGTGC 61.175 55.000 5.48 0.00 39.98 5.01
2783 5882 2.503546 TGCTGGTGCACTCGTCAA 59.496 55.556 17.98 0.00 45.31 3.18
2784 5883 1.887242 TGCTGGTGCACTCGTCAAC 60.887 57.895 17.98 1.99 45.31 3.18
2785 5884 2.607892 GCTGGTGCACTCGTCAACC 61.608 63.158 17.98 0.00 39.41 3.77
2786 5885 2.279851 TGGTGCACTCGTCAACCG 60.280 61.111 17.98 0.00 38.13 4.44
2787 5886 3.041940 GGTGCACTCGTCAACCGG 61.042 66.667 17.98 0.00 37.11 5.28
2788 5887 2.028484 GTGCACTCGTCAACCGGA 59.972 61.111 9.46 0.00 37.11 5.14
2789 5888 2.028484 TGCACTCGTCAACCGGAC 59.972 61.111 9.46 0.00 43.36 4.79
2796 5895 3.621520 GTCAACCGGACGACACAC 58.378 61.111 9.46 0.00 36.65 3.82
2797 5896 1.227031 GTCAACCGGACGACACACA 60.227 57.895 9.46 0.00 36.65 3.72
2798 5897 0.599204 GTCAACCGGACGACACACAT 60.599 55.000 9.46 0.00 36.65 3.21
2799 5898 0.598942 TCAACCGGACGACACACATG 60.599 55.000 9.46 0.00 0.00 3.21
2800 5899 1.959226 AACCGGACGACACACATGC 60.959 57.895 9.46 0.00 0.00 4.06
2801 5900 3.118454 CCGGACGACACACATGCC 61.118 66.667 0.00 0.00 0.00 4.40
2802 5901 2.356913 CGGACGACACACATGCCA 60.357 61.111 0.00 0.00 0.00 4.92
2803 5902 1.958715 CGGACGACACACATGCCAA 60.959 57.895 0.00 0.00 0.00 4.52
2804 5903 1.574428 GGACGACACACATGCCAAC 59.426 57.895 0.00 0.00 0.00 3.77
2805 5904 1.163420 GGACGACACACATGCCAACA 61.163 55.000 0.00 0.00 0.00 3.33
2806 5905 0.041312 GACGACACACATGCCAACAC 60.041 55.000 0.00 0.00 0.00 3.32
2807 5906 0.746204 ACGACACACATGCCAACACA 60.746 50.000 0.00 0.00 0.00 3.72
2808 5907 0.316937 CGACACACATGCCAACACAC 60.317 55.000 0.00 0.00 0.00 3.82
2809 5908 0.737804 GACACACATGCCAACACACA 59.262 50.000 0.00 0.00 0.00 3.72
2810 5909 1.133982 GACACACATGCCAACACACAA 59.866 47.619 0.00 0.00 0.00 3.33
2811 5910 1.547820 ACACACATGCCAACACACAAA 59.452 42.857 0.00 0.00 0.00 2.83
2812 5911 2.168106 ACACACATGCCAACACACAAAT 59.832 40.909 0.00 0.00 0.00 2.32
2813 5912 3.382865 ACACACATGCCAACACACAAATA 59.617 39.130 0.00 0.00 0.00 1.40
2814 5913 4.142071 ACACACATGCCAACACACAAATAA 60.142 37.500 0.00 0.00 0.00 1.40
2815 5914 4.807834 CACACATGCCAACACACAAATAAA 59.192 37.500 0.00 0.00 0.00 1.40
2816 5915 5.049167 ACACATGCCAACACACAAATAAAG 58.951 37.500 0.00 0.00 0.00 1.85
2817 5916 4.448395 CACATGCCAACACACAAATAAAGG 59.552 41.667 0.00 0.00 0.00 3.11
2818 5917 4.100808 ACATGCCAACACACAAATAAAGGT 59.899 37.500 0.00 0.00 0.00 3.50
2819 5918 4.052159 TGCCAACACACAAATAAAGGTG 57.948 40.909 0.00 0.00 40.78 4.00
2820 5919 3.181471 TGCCAACACACAAATAAAGGTGG 60.181 43.478 0.00 0.00 39.31 4.61
2821 5920 3.801983 GCCAACACACAAATAAAGGTGGG 60.802 47.826 0.00 0.00 43.96 4.61
2822 5921 3.639094 CCAACACACAAATAAAGGTGGGA 59.361 43.478 0.46 0.00 40.89 4.37
2823 5922 4.500716 CCAACACACAAATAAAGGTGGGAC 60.501 45.833 0.46 0.00 40.89 4.46
2824 5923 4.178956 ACACACAAATAAAGGTGGGACT 57.821 40.909 0.46 0.00 40.89 3.85
2825 5924 4.542697 ACACACAAATAAAGGTGGGACTT 58.457 39.130 0.46 0.00 40.89 3.01
2826 5925 4.340950 ACACACAAATAAAGGTGGGACTTG 59.659 41.667 0.46 0.00 40.89 3.16
2827 5926 4.582656 CACACAAATAAAGGTGGGACTTGA 59.417 41.667 0.00 0.00 40.89 3.02
2828 5927 4.827284 ACACAAATAAAGGTGGGACTTGAG 59.173 41.667 0.00 0.00 39.31 3.02
2829 5928 4.827284 CACAAATAAAGGTGGGACTTGAGT 59.173 41.667 0.00 0.00 0.00 3.41
2830 5929 5.301805 CACAAATAAAGGTGGGACTTGAGTT 59.698 40.000 0.00 0.00 0.00 3.01
2831 5930 5.897250 ACAAATAAAGGTGGGACTTGAGTTT 59.103 36.000 0.00 0.00 0.00 2.66
2832 5931 6.183360 ACAAATAAAGGTGGGACTTGAGTTTG 60.183 38.462 0.00 0.00 35.42 2.93
2833 5932 3.662759 AAAGGTGGGACTTGAGTTTGA 57.337 42.857 0.00 0.00 0.00 2.69
2834 5933 2.640316 AGGTGGGACTTGAGTTTGAC 57.360 50.000 0.00 0.00 0.00 3.18
2835 5934 1.143073 AGGTGGGACTTGAGTTTGACC 59.857 52.381 0.00 0.00 0.00 4.02
2836 5935 1.133915 GGTGGGACTTGAGTTTGACCA 60.134 52.381 0.00 0.00 0.00 4.02
2837 5936 1.947456 GTGGGACTTGAGTTTGACCAC 59.053 52.381 0.00 0.00 39.91 4.16
2838 5937 1.226746 GGGACTTGAGTTTGACCACG 58.773 55.000 0.00 0.00 0.00 4.94
2839 5938 0.586802 GGACTTGAGTTTGACCACGC 59.413 55.000 0.00 0.00 0.00 5.34
2840 5939 0.586802 GACTTGAGTTTGACCACGCC 59.413 55.000 0.00 0.00 0.00 5.68
2841 5940 0.107410 ACTTGAGTTTGACCACGCCA 60.107 50.000 0.00 0.00 0.00 5.69
2842 5941 1.238439 CTTGAGTTTGACCACGCCAT 58.762 50.000 0.00 0.00 0.00 4.40
2843 5942 1.197721 CTTGAGTTTGACCACGCCATC 59.802 52.381 0.00 0.00 0.00 3.51
2844 5943 0.948623 TGAGTTTGACCACGCCATCG 60.949 55.000 0.00 0.00 42.43 3.84
2845 5944 2.175811 GTTTGACCACGCCATCGC 59.824 61.111 0.00 0.00 39.84 4.58
2871 5970 2.282391 TGGTCATGCCAGCACACC 60.282 61.111 13.44 13.44 43.61 4.16
2872 5971 2.034687 GGTCATGCCAGCACACCT 59.965 61.111 13.17 0.00 37.17 4.00
2873 5972 2.338015 GGTCATGCCAGCACACCTG 61.338 63.158 13.17 0.82 41.41 4.00
2874 5973 1.601759 GTCATGCCAGCACACCTGT 60.602 57.895 0.00 0.00 40.06 4.00
2875 5974 1.302752 TCATGCCAGCACACCTGTC 60.303 57.895 0.00 0.00 40.06 3.51
2876 5975 2.359107 ATGCCAGCACACCTGTCG 60.359 61.111 0.00 0.00 40.06 4.35
2877 5976 3.907260 ATGCCAGCACACCTGTCGG 62.907 63.158 0.00 0.00 40.06 4.79
2879 5978 4.624364 CCAGCACACCTGTCGGCA 62.624 66.667 0.00 0.00 40.06 5.69
2880 5979 2.359107 CAGCACACCTGTCGGCAT 60.359 61.111 0.00 0.00 36.79 4.40
2881 5980 1.079197 CAGCACACCTGTCGGCATA 60.079 57.895 0.00 0.00 36.79 3.14
2882 5981 1.079127 AGCACACCTGTCGGCATAC 60.079 57.895 0.00 0.00 0.00 2.39
2883 5982 1.375396 GCACACCTGTCGGCATACA 60.375 57.895 0.00 0.00 0.00 2.29
2884 5983 0.953471 GCACACCTGTCGGCATACAA 60.953 55.000 0.00 0.00 0.00 2.41
2885 5984 1.518325 CACACCTGTCGGCATACAAA 58.482 50.000 0.00 0.00 0.00 2.83
2886 5985 1.876799 CACACCTGTCGGCATACAAAA 59.123 47.619 0.00 0.00 0.00 2.44
2887 5986 2.292016 CACACCTGTCGGCATACAAAAA 59.708 45.455 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.162208 CCGTGAGCAGCATGTAAAATGT 59.838 45.455 0.00 0.00 39.31 2.71
1 2 2.789208 CCGTGAGCAGCATGTAAAATG 58.211 47.619 0.00 0.00 39.31 2.32
84 85 4.151867 AGGCGAAAAAGTACACGAATCTTC 59.848 41.667 0.00 0.00 0.00 2.87
114 116 4.336433 CGGTATAGTCGTCCTCCTTACAAA 59.664 45.833 0.00 0.00 0.00 2.83
117 119 3.733337 TCGGTATAGTCGTCCTCCTTAC 58.267 50.000 0.00 0.00 0.00 2.34
219 222 4.207891 TGGAGTATTCCTGCTCAACTTC 57.792 45.455 5.79 0.00 44.36 3.01
325 331 5.481473 TGCTAGCCATCTTCCAAGAAAAATT 59.519 36.000 13.29 0.00 38.77 1.82
331 337 3.482156 GATGCTAGCCATCTTCCAAGA 57.518 47.619 13.29 0.00 45.58 3.02
393 438 5.982356 AGCATCATAGGCACGATAATACAT 58.018 37.500 0.00 0.00 0.00 2.29
776 1428 7.962995 TTCATCTGTATGAGTTTCCTAGACT 57.037 36.000 0.00 0.00 42.97 3.24
865 1517 9.171877 AGTAGACTTTAGTTGCTAACGTAGTAT 57.828 33.333 0.00 0.00 45.00 2.12
1014 1689 3.849911 CACATCACTGTCGTATTCCAGT 58.150 45.455 0.00 0.00 42.47 4.00
1016 1691 2.028567 TGCACATCACTGTCGTATTCCA 60.029 45.455 0.00 0.00 31.62 3.53
1058 1733 1.523758 GAGTAGGTGTTGGCTTGTGG 58.476 55.000 0.00 0.00 0.00 4.17
1066 1741 0.317160 TCGTGCTGGAGTAGGTGTTG 59.683 55.000 0.00 0.00 0.00 3.33
1176 1857 7.293299 TGAGTATGGGTCTCTCCATCATTATTT 59.707 37.037 0.00 0.00 43.57 1.40
1182 1863 3.688049 TGAGTATGGGTCTCTCCATCA 57.312 47.619 0.00 0.00 43.57 3.07
1195 1876 7.813627 CACCATTCTCTGATCACTATGAGTATG 59.186 40.741 16.18 16.18 35.53 2.39
1196 1877 7.727634 TCACCATTCTCTGATCACTATGAGTAT 59.272 37.037 8.95 3.62 0.00 2.12
1197 1878 7.013750 GTCACCATTCTCTGATCACTATGAGTA 59.986 40.741 8.95 1.63 0.00 2.59
1198 1879 5.896106 TCACCATTCTCTGATCACTATGAGT 59.104 40.000 8.95 1.96 0.00 3.41
1199 1880 6.183360 TGTCACCATTCTCTGATCACTATGAG 60.183 42.308 3.81 3.81 0.00 2.90
1200 1881 5.658190 TGTCACCATTCTCTGATCACTATGA 59.342 40.000 0.00 0.00 0.00 2.15
1209 1890 1.338105 CGCCTTGTCACCATTCTCTGA 60.338 52.381 0.00 0.00 0.00 3.27
1375 2056 3.797039 CAGAGTTCCGCATCTGGATAAA 58.203 45.455 0.00 0.00 39.42 1.40
1395 2076 1.825474 CCTCTCGCTAAGGTCTTTCCA 59.175 52.381 0.00 0.00 39.02 3.53
1432 2113 1.068588 GGAACCAAAACTTGACCTGCC 59.931 52.381 0.00 0.00 0.00 4.85
1520 2217 6.627087 AGGTGACCCATGTGGAATATATAG 57.373 41.667 0.00 0.00 37.39 1.31
1521 2218 7.959152 TCTTAGGTGACCCATGTGGAATATATA 59.041 37.037 0.00 0.00 37.39 0.86
1522 2219 6.792473 TCTTAGGTGACCCATGTGGAATATAT 59.208 38.462 0.00 0.00 37.39 0.86
1523 2220 6.042781 GTCTTAGGTGACCCATGTGGAATATA 59.957 42.308 0.00 0.00 37.39 0.86
1524 2221 4.975147 TCTTAGGTGACCCATGTGGAATAT 59.025 41.667 0.00 0.00 37.39 1.28
1525 2222 4.163458 GTCTTAGGTGACCCATGTGGAATA 59.837 45.833 0.00 0.00 37.39 1.75
1526 2223 3.054361 GTCTTAGGTGACCCATGTGGAAT 60.054 47.826 0.00 0.00 37.39 3.01
1527 2224 2.304761 GTCTTAGGTGACCCATGTGGAA 59.695 50.000 0.00 0.00 37.39 3.53
1528 2225 1.906574 GTCTTAGGTGACCCATGTGGA 59.093 52.381 0.00 0.00 37.39 4.02
1608 2370 7.484959 GCATCATTTTAGTGGTTAGCAAAGTAC 59.515 37.037 0.00 0.00 0.00 2.73
1632 2395 8.143193 CCTGCATTTATTAATTTCAGGTATGCA 58.857 33.333 0.00 0.00 42.26 3.96
1694 2457 6.155910 TCATCTTTTAGCATCTGGTTCTCTCT 59.844 38.462 0.00 0.00 0.00 3.10
1792 2555 1.674817 CGTTGGTGCTCCGAGGTATTT 60.675 52.381 6.59 0.00 36.30 1.40
1793 2556 0.108329 CGTTGGTGCTCCGAGGTATT 60.108 55.000 6.59 0.00 36.30 1.89
1818 2581 5.538053 TCCTTGAGCCACATATTCTCTCTAG 59.462 44.000 0.00 0.00 0.00 2.43
1821 2584 4.679373 TCCTTGAGCCACATATTCTCTC 57.321 45.455 0.00 0.00 0.00 3.20
1832 2595 1.604604 CGGAGTTTTTCCTTGAGCCA 58.395 50.000 0.00 0.00 44.41 4.75
1899 2664 0.323087 GTCGTGGGTAAATTGGGGCT 60.323 55.000 0.00 0.00 0.00 5.19
1947 2712 3.181479 GCGACACTAGGGTTCATGTCATA 60.181 47.826 0.00 0.00 41.26 2.15
1950 2715 1.204941 AGCGACACTAGGGTTCATGTC 59.795 52.381 0.00 0.00 38.46 3.06
1965 2730 2.288186 GCTAGCCAAGGAATAAAGCGAC 59.712 50.000 2.29 0.00 0.00 5.19
1996 2761 4.709250 TGTACATACACACACAACATGGT 58.291 39.130 0.00 0.00 0.00 3.55
2116 2889 0.036010 ATCCCAAAGCCACTCACTCG 60.036 55.000 0.00 0.00 0.00 4.18
2168 2941 5.353400 CGGTTACAAATAGGAAGGGAGAAAC 59.647 44.000 0.00 0.00 0.00 2.78
2198 2972 2.543777 TCACTTGGCCACTACTTGAC 57.456 50.000 3.88 0.00 0.00 3.18
2214 5286 7.532682 TTTTGGTTTTTGCTTGTCTATTCAC 57.467 32.000 0.00 0.00 0.00 3.18
2234 5312 4.090354 CGGCATTCAACTAGCACATTTTTG 59.910 41.667 0.00 0.00 0.00 2.44
2266 5345 8.443160 CGTTGAAATGTTACAAGAGACATACAT 58.557 33.333 0.00 0.00 35.55 2.29
2268 5347 7.740346 CACGTTGAAATGTTACAAGAGACATAC 59.260 37.037 0.00 0.00 35.55 2.39
2270 5349 6.260050 ACACGTTGAAATGTTACAAGAGACAT 59.740 34.615 0.00 0.00 38.08 3.06
2274 5353 6.043327 TCACACGTTGAAATGTTACAAGAG 57.957 37.500 0.00 0.00 0.00 2.85
2290 5369 2.595124 TGAATGACACACTCACACGT 57.405 45.000 0.00 0.00 0.00 4.49
2326 5405 3.524095 TTCTTGCCCAGAAGGATGAAA 57.476 42.857 0.00 0.00 36.51 2.69
2329 5408 3.575687 ACTTTTTCTTGCCCAGAAGGATG 59.424 43.478 0.00 0.00 42.76 3.51
2338 5417 6.321181 TGATATCATACCACTTTTTCTTGCCC 59.679 38.462 0.00 0.00 0.00 5.36
2359 5443 4.202398 GGCTCCAGAACAGGATCAATGATA 60.202 45.833 0.00 0.00 36.99 2.15
2388 5472 1.228215 TGTGTGTGGTGGATGGCAG 60.228 57.895 0.00 0.00 0.00 4.85
2399 5484 0.588730 CGCACCGAAAAGTGTGTGTG 60.589 55.000 0.00 0.00 42.12 3.82
2501 5600 2.492088 CGTTGGAGTGACTCTGACCATA 59.508 50.000 12.92 0.00 0.00 2.74
2509 5608 2.047179 GGCCCGTTGGAGTGACTC 60.047 66.667 3.47 3.47 0.00 3.36
2510 5609 4.003788 CGGCCCGTTGGAGTGACT 62.004 66.667 0.00 0.00 0.00 3.41
2511 5610 3.998672 TCGGCCCGTTGGAGTGAC 61.999 66.667 1.63 0.00 0.00 3.67
2512 5611 3.998672 GTCGGCCCGTTGGAGTGA 61.999 66.667 1.63 0.00 0.00 3.41
2515 5614 3.835790 TTTGGTCGGCCCGTTGGAG 62.836 63.158 2.12 0.00 35.15 3.86
2516 5615 3.198953 ATTTGGTCGGCCCGTTGGA 62.199 57.895 2.12 0.00 35.15 3.53
2517 5616 2.675075 ATTTGGTCGGCCCGTTGG 60.675 61.111 2.12 0.00 35.15 3.77
2518 5617 2.566010 CATTTGGTCGGCCCGTTG 59.434 61.111 2.12 0.00 35.15 4.10
2519 5618 2.675075 CCATTTGGTCGGCCCGTT 60.675 61.111 2.12 0.00 35.15 4.44
2520 5619 3.642503 TCCATTTGGTCGGCCCGT 61.643 61.111 2.12 0.00 35.15 5.28
2521 5620 3.131478 GTCCATTTGGTCGGCCCG 61.131 66.667 2.12 0.00 35.15 6.13
2522 5621 3.131478 CGTCCATTTGGTCGGCCC 61.131 66.667 2.12 0.00 41.75 5.80
2526 5625 1.366111 ATTCGCCGTCCATTTGGTCG 61.366 55.000 8.92 8.92 44.31 4.79
2527 5626 0.808755 AATTCGCCGTCCATTTGGTC 59.191 50.000 0.00 0.00 36.34 4.02
2528 5627 1.067915 CAAATTCGCCGTCCATTTGGT 60.068 47.619 9.69 0.00 35.23 3.67
2529 5628 1.067915 ACAAATTCGCCGTCCATTTGG 60.068 47.619 17.18 0.00 40.68 3.28
2530 5629 2.250188 GACAAATTCGCCGTCCATTTG 58.750 47.619 13.66 13.66 41.66 2.32
2531 5630 1.201414 GGACAAATTCGCCGTCCATTT 59.799 47.619 2.98 0.00 46.98 2.32
2532 5631 0.808755 GGACAAATTCGCCGTCCATT 59.191 50.000 2.98 0.00 46.98 3.16
2533 5632 2.477880 GGACAAATTCGCCGTCCAT 58.522 52.632 2.98 0.00 46.98 3.41
2534 5633 3.975246 GGACAAATTCGCCGTCCA 58.025 55.556 2.98 0.00 46.98 4.02
2535 5634 2.782615 CGGACAAATTCGCCGTCC 59.217 61.111 0.00 0.00 44.79 4.79
2536 5635 2.097728 GCGGACAAATTCGCCGTC 59.902 61.111 13.03 3.09 46.38 4.79
2541 5640 4.032331 ACAAAAACAAAGCGGACAAATTCG 59.968 37.500 0.00 0.00 0.00 3.34
2542 5641 5.463499 ACAAAAACAAAGCGGACAAATTC 57.537 34.783 0.00 0.00 0.00 2.17
2543 5642 5.871465 AACAAAAACAAAGCGGACAAATT 57.129 30.435 0.00 0.00 0.00 1.82
2544 5643 5.391416 CCAAACAAAAACAAAGCGGACAAAT 60.391 36.000 0.00 0.00 0.00 2.32
2545 5644 4.083802 CCAAACAAAAACAAAGCGGACAAA 60.084 37.500 0.00 0.00 0.00 2.83
2546 5645 3.433615 CCAAACAAAAACAAAGCGGACAA 59.566 39.130 0.00 0.00 0.00 3.18
2547 5646 2.996621 CCAAACAAAAACAAAGCGGACA 59.003 40.909 0.00 0.00 0.00 4.02
2548 5647 3.254892 TCCAAACAAAAACAAAGCGGAC 58.745 40.909 0.00 0.00 0.00 4.79
2549 5648 3.594603 TCCAAACAAAAACAAAGCGGA 57.405 38.095 0.00 0.00 0.00 5.54
2550 5649 3.060607 CGATCCAAACAAAAACAAAGCGG 60.061 43.478 0.00 0.00 0.00 5.52
2551 5650 3.060607 CCGATCCAAACAAAAACAAAGCG 60.061 43.478 0.00 0.00 0.00 4.68
2552 5651 3.868661 ACCGATCCAAACAAAAACAAAGC 59.131 39.130 0.00 0.00 0.00 3.51
2553 5652 4.206200 CGACCGATCCAAACAAAAACAAAG 59.794 41.667 0.00 0.00 0.00 2.77
2554 5653 4.106197 CGACCGATCCAAACAAAAACAAA 58.894 39.130 0.00 0.00 0.00 2.83
2555 5654 3.489398 CCGACCGATCCAAACAAAAACAA 60.489 43.478 0.00 0.00 0.00 2.83
2556 5655 2.033550 CCGACCGATCCAAACAAAAACA 59.966 45.455 0.00 0.00 0.00 2.83
2557 5656 2.657184 CCGACCGATCCAAACAAAAAC 58.343 47.619 0.00 0.00 0.00 2.43
2558 5657 1.001158 GCCGACCGATCCAAACAAAAA 60.001 47.619 0.00 0.00 0.00 1.94
2559 5658 0.594110 GCCGACCGATCCAAACAAAA 59.406 50.000 0.00 0.00 0.00 2.44
2560 5659 1.238625 GGCCGACCGATCCAAACAAA 61.239 55.000 0.00 0.00 0.00 2.83
2561 5660 1.673009 GGCCGACCGATCCAAACAA 60.673 57.895 0.00 0.00 0.00 2.83
2562 5661 2.046700 GGCCGACCGATCCAAACA 60.047 61.111 0.00 0.00 0.00 2.83
2581 5680 2.141122 AAAACATTGCAGACGCCGGG 62.141 55.000 2.18 0.00 37.32 5.73
2582 5681 0.519519 TAAAACATTGCAGACGCCGG 59.480 50.000 0.00 0.00 37.32 6.13
2583 5682 1.463056 TCTAAAACATTGCAGACGCCG 59.537 47.619 0.00 0.00 37.32 6.46
2584 5683 3.764885 ATCTAAAACATTGCAGACGCC 57.235 42.857 0.00 0.00 37.32 5.68
2585 5684 4.324402 CCAAATCTAAAACATTGCAGACGC 59.676 41.667 0.00 0.00 39.24 5.19
2586 5685 4.858692 CCCAAATCTAAAACATTGCAGACG 59.141 41.667 0.00 0.00 0.00 4.18
2587 5686 5.783111 ACCCAAATCTAAAACATTGCAGAC 58.217 37.500 0.00 0.00 0.00 3.51
2588 5687 5.335583 CGACCCAAATCTAAAACATTGCAGA 60.336 40.000 0.00 0.00 0.00 4.26
2589 5688 4.858692 CGACCCAAATCTAAAACATTGCAG 59.141 41.667 0.00 0.00 0.00 4.41
2590 5689 4.321601 CCGACCCAAATCTAAAACATTGCA 60.322 41.667 0.00 0.00 0.00 4.08
2591 5690 4.173256 CCGACCCAAATCTAAAACATTGC 58.827 43.478 0.00 0.00 0.00 3.56
2592 5691 4.173256 GCCGACCCAAATCTAAAACATTG 58.827 43.478 0.00 0.00 0.00 2.82
2593 5692 3.829601 TGCCGACCCAAATCTAAAACATT 59.170 39.130 0.00 0.00 0.00 2.71
2594 5693 3.426615 TGCCGACCCAAATCTAAAACAT 58.573 40.909 0.00 0.00 0.00 2.71
2595 5694 2.817258 CTGCCGACCCAAATCTAAAACA 59.183 45.455 0.00 0.00 0.00 2.83
2596 5695 2.817844 ACTGCCGACCCAAATCTAAAAC 59.182 45.455 0.00 0.00 0.00 2.43
2597 5696 2.817258 CACTGCCGACCCAAATCTAAAA 59.183 45.455 0.00 0.00 0.00 1.52
2598 5697 2.432444 CACTGCCGACCCAAATCTAAA 58.568 47.619 0.00 0.00 0.00 1.85
2599 5698 1.948611 GCACTGCCGACCCAAATCTAA 60.949 52.381 0.00 0.00 0.00 2.10
2600 5699 0.392461 GCACTGCCGACCCAAATCTA 60.392 55.000 0.00 0.00 0.00 1.98
2601 5700 1.675641 GCACTGCCGACCCAAATCT 60.676 57.895 0.00 0.00 0.00 2.40
2602 5701 2.877691 GCACTGCCGACCCAAATC 59.122 61.111 0.00 0.00 0.00 2.17
2603 5702 3.055719 CGCACTGCCGACCCAAAT 61.056 61.111 0.00 0.00 0.00 2.32
2604 5703 4.555709 ACGCACTGCCGACCCAAA 62.556 61.111 0.00 0.00 0.00 3.28
2605 5704 4.980805 GACGCACTGCCGACCCAA 62.981 66.667 0.00 0.00 0.00 4.12
2608 5707 4.980805 TTGGACGCACTGCCGACC 62.981 66.667 0.00 1.96 42.08 4.79
2609 5708 3.712881 GTTGGACGCACTGCCGAC 61.713 66.667 0.00 0.00 0.00 4.79
2620 5719 1.663702 CTGGGTCGACACGTTGGAC 60.664 63.158 18.91 0.00 0.00 4.02
2621 5720 1.678598 AACTGGGTCGACACGTTGGA 61.679 55.000 21.46 1.34 0.00 3.53
2622 5721 1.219522 GAACTGGGTCGACACGTTGG 61.220 60.000 25.25 13.48 0.00 3.77
2623 5722 0.528901 TGAACTGGGTCGACACGTTG 60.529 55.000 25.25 15.66 0.00 4.10
2624 5723 0.391597 ATGAACTGGGTCGACACGTT 59.608 50.000 22.01 22.01 0.00 3.99
2625 5724 1.250328 TATGAACTGGGTCGACACGT 58.750 50.000 18.91 13.40 0.00 4.49
2626 5725 2.460918 GATATGAACTGGGTCGACACG 58.539 52.381 18.91 12.72 0.00 4.49
2627 5726 2.798499 CGGATATGAACTGGGTCGACAC 60.798 54.545 18.91 15.66 0.00 3.67
2628 5727 1.407618 CGGATATGAACTGGGTCGACA 59.592 52.381 18.91 0.00 0.00 4.35
2629 5728 1.868519 GCGGATATGAACTGGGTCGAC 60.869 57.143 7.13 7.13 0.00 4.20
2630 5729 0.387929 GCGGATATGAACTGGGTCGA 59.612 55.000 0.00 0.00 0.00 4.20
2631 5730 0.104120 TGCGGATATGAACTGGGTCG 59.896 55.000 0.00 0.00 0.00 4.79
2632 5731 1.139058 AGTGCGGATATGAACTGGGTC 59.861 52.381 0.00 0.00 0.00 4.46
2633 5732 1.139058 GAGTGCGGATATGAACTGGGT 59.861 52.381 0.00 0.00 0.00 4.51
2634 5733 1.138859 TGAGTGCGGATATGAACTGGG 59.861 52.381 0.00 0.00 0.00 4.45
2635 5734 2.602257 TGAGTGCGGATATGAACTGG 57.398 50.000 0.00 0.00 0.00 4.00
2636 5735 3.525537 AGTTGAGTGCGGATATGAACTG 58.474 45.455 0.00 0.00 0.00 3.16
2637 5736 3.895232 AGTTGAGTGCGGATATGAACT 57.105 42.857 0.00 0.00 0.00 3.01
2638 5737 4.946784 AAAGTTGAGTGCGGATATGAAC 57.053 40.909 0.00 0.00 0.00 3.18
2639 5738 5.957842 AAAAAGTTGAGTGCGGATATGAA 57.042 34.783 0.00 0.00 0.00 2.57
2659 5758 0.599060 CCGCGGGCCTTTCTTAAAAA 59.401 50.000 20.10 0.00 0.00 1.94
2660 5759 1.868987 GCCGCGGGCCTTTCTTAAAA 61.869 55.000 29.38 0.00 44.06 1.52
2661 5760 2.337246 GCCGCGGGCCTTTCTTAAA 61.337 57.895 29.38 0.00 44.06 1.52
2662 5761 2.748647 GCCGCGGGCCTTTCTTAA 60.749 61.111 29.38 0.00 44.06 1.85
2679 5778 1.453197 TGGCTGCTGGCATGATCAG 60.453 57.895 16.03 4.41 44.10 2.90
2680 5779 2.678470 TGGCTGCTGGCATGATCA 59.322 55.556 16.03 0.00 44.10 2.92
2687 5786 1.453379 ATGAGACATGGCTGCTGGC 60.453 57.895 5.31 10.40 40.90 4.85
2688 5787 1.725557 GCATGAGACATGGCTGCTGG 61.726 60.000 5.31 0.00 0.00 4.85
2689 5788 0.748367 AGCATGAGACATGGCTGCTG 60.748 55.000 5.31 3.86 41.38 4.41
2690 5789 0.748367 CAGCATGAGACATGGCTGCT 60.748 55.000 5.31 6.94 46.00 4.24
2691 5790 1.728069 CAGCATGAGACATGGCTGC 59.272 57.895 5.31 3.95 46.00 5.25
2693 5792 4.979657 CCAGCATGAGACATGGCT 57.020 55.556 0.00 0.00 39.69 4.75
2695 5794 1.381928 GGTGCCAGCATGAGACATGG 61.382 60.000 12.56 0.00 39.69 3.66
2696 5795 0.678684 TGGTGCCAGCATGAGACATG 60.679 55.000 0.00 7.29 39.69 3.21
2697 5796 0.257905 ATGGTGCCAGCATGAGACAT 59.742 50.000 8.88 0.00 39.69 3.06
2698 5797 1.687014 ATGGTGCCAGCATGAGACA 59.313 52.632 8.88 0.00 39.69 3.41
2699 5798 4.651867 ATGGTGCCAGCATGAGAC 57.348 55.556 8.88 0.00 39.69 3.36
2718 5817 2.901840 ATTGTATGCCGGCGCTGG 60.902 61.111 31.57 31.57 35.36 4.85
2719 5818 2.328989 CATTGTATGCCGGCGCTG 59.671 61.111 23.90 9.96 35.36 5.18
2728 5827 2.937469 TTTGAAGCCGGCATTGTATG 57.063 45.000 31.54 0.00 0.00 2.39
2729 5828 3.951775 TTTTTGAAGCCGGCATTGTAT 57.048 38.095 31.54 2.66 0.00 2.29
2746 5845 6.392354 CAGCATGAACTGTGGTGATATTTTT 58.608 36.000 0.00 0.00 45.32 1.94
2747 5846 5.105635 CCAGCATGAACTGTGGTGATATTTT 60.106 40.000 0.00 0.00 45.32 1.82
2748 5847 4.400251 CCAGCATGAACTGTGGTGATATTT 59.600 41.667 0.00 0.00 45.32 1.40
2749 5848 3.949754 CCAGCATGAACTGTGGTGATATT 59.050 43.478 0.00 0.00 45.32 1.28
2750 5849 3.054139 ACCAGCATGAACTGTGGTGATAT 60.054 43.478 0.00 0.00 45.32 1.63
2751 5850 2.305635 ACCAGCATGAACTGTGGTGATA 59.694 45.455 0.00 0.00 45.32 2.15
2752 5851 1.074405 ACCAGCATGAACTGTGGTGAT 59.926 47.619 0.00 0.00 45.32 3.06
2753 5852 0.473755 ACCAGCATGAACTGTGGTGA 59.526 50.000 0.00 0.00 45.32 4.02
2754 5853 0.594602 CACCAGCATGAACTGTGGTG 59.405 55.000 13.68 13.68 43.80 4.17
2755 5854 1.174712 GCACCAGCATGAACTGTGGT 61.175 55.000 0.00 0.00 39.69 4.16
2756 5855 1.582968 GCACCAGCATGAACTGTGG 59.417 57.895 0.00 0.00 39.69 4.17
2767 5866 2.607892 GGTTGACGAGTGCACCAGC 61.608 63.158 14.63 6.17 42.57 4.85
2768 5867 3.642755 GGTTGACGAGTGCACCAG 58.357 61.111 14.63 10.55 0.00 4.00
2779 5878 0.599204 ATGTGTGTCGTCCGGTTGAC 60.599 55.000 18.04 18.04 40.81 3.18
2780 5879 0.598942 CATGTGTGTCGTCCGGTTGA 60.599 55.000 0.00 0.00 0.00 3.18
2781 5880 1.859398 CATGTGTGTCGTCCGGTTG 59.141 57.895 0.00 0.00 0.00 3.77
2782 5881 1.959226 GCATGTGTGTCGTCCGGTT 60.959 57.895 0.00 0.00 0.00 4.44
2783 5882 2.357034 GCATGTGTGTCGTCCGGT 60.357 61.111 0.00 0.00 0.00 5.28
2784 5883 3.118454 GGCATGTGTGTCGTCCGG 61.118 66.667 0.00 0.00 0.00 5.14
2785 5884 1.958715 TTGGCATGTGTGTCGTCCG 60.959 57.895 0.00 0.00 30.74 4.79
2786 5885 1.163420 TGTTGGCATGTGTGTCGTCC 61.163 55.000 0.00 0.00 30.74 4.79
2787 5886 0.041312 GTGTTGGCATGTGTGTCGTC 60.041 55.000 0.00 0.00 30.74 4.20
2788 5887 0.746204 TGTGTTGGCATGTGTGTCGT 60.746 50.000 0.00 0.00 30.74 4.34
2789 5888 0.316937 GTGTGTTGGCATGTGTGTCG 60.317 55.000 0.00 0.00 30.74 4.35
2790 5889 0.737804 TGTGTGTTGGCATGTGTGTC 59.262 50.000 0.00 0.00 0.00 3.67
2791 5890 1.180907 TTGTGTGTTGGCATGTGTGT 58.819 45.000 0.00 0.00 0.00 3.72
2792 5891 2.290531 TTTGTGTGTTGGCATGTGTG 57.709 45.000 0.00 0.00 0.00 3.82
2793 5892 4.662468 TTATTTGTGTGTTGGCATGTGT 57.338 36.364 0.00 0.00 0.00 3.72
2794 5893 4.448395 CCTTTATTTGTGTGTTGGCATGTG 59.552 41.667 0.00 0.00 0.00 3.21
2795 5894 4.100808 ACCTTTATTTGTGTGTTGGCATGT 59.899 37.500 0.00 0.00 0.00 3.21
2796 5895 4.448395 CACCTTTATTTGTGTGTTGGCATG 59.552 41.667 0.00 0.00 0.00 4.06
2797 5896 4.502950 CCACCTTTATTTGTGTGTTGGCAT 60.503 41.667 0.00 0.00 0.00 4.40
2798 5897 3.181471 CCACCTTTATTTGTGTGTTGGCA 60.181 43.478 0.00 0.00 0.00 4.92
2799 5898 3.389221 CCACCTTTATTTGTGTGTTGGC 58.611 45.455 0.00 0.00 0.00 4.52
2800 5899 3.639094 TCCCACCTTTATTTGTGTGTTGG 59.361 43.478 0.00 0.00 0.00 3.77
2801 5900 4.340950 AGTCCCACCTTTATTTGTGTGTTG 59.659 41.667 0.00 0.00 0.00 3.33
2802 5901 4.542697 AGTCCCACCTTTATTTGTGTGTT 58.457 39.130 0.00 0.00 0.00 3.32
2803 5902 4.178956 AGTCCCACCTTTATTTGTGTGT 57.821 40.909 0.00 0.00 0.00 3.72
2804 5903 4.582656 TCAAGTCCCACCTTTATTTGTGTG 59.417 41.667 0.00 0.00 0.00 3.82
2805 5904 4.798882 TCAAGTCCCACCTTTATTTGTGT 58.201 39.130 0.00 0.00 0.00 3.72
2806 5905 4.827284 ACTCAAGTCCCACCTTTATTTGTG 59.173 41.667 0.00 0.00 0.00 3.33
2807 5906 5.061721 ACTCAAGTCCCACCTTTATTTGT 57.938 39.130 0.00 0.00 0.00 2.83
2808 5907 6.040391 TCAAACTCAAGTCCCACCTTTATTTG 59.960 38.462 0.00 0.00 0.00 2.32
2809 5908 6.040504 GTCAAACTCAAGTCCCACCTTTATTT 59.959 38.462 0.00 0.00 0.00 1.40
2810 5909 5.535030 GTCAAACTCAAGTCCCACCTTTATT 59.465 40.000 0.00 0.00 0.00 1.40
2811 5910 5.070685 GTCAAACTCAAGTCCCACCTTTAT 58.929 41.667 0.00 0.00 0.00 1.40
2812 5911 4.457466 GTCAAACTCAAGTCCCACCTTTA 58.543 43.478 0.00 0.00 0.00 1.85
2813 5912 3.288092 GTCAAACTCAAGTCCCACCTTT 58.712 45.455 0.00 0.00 0.00 3.11
2814 5913 2.422945 GGTCAAACTCAAGTCCCACCTT 60.423 50.000 0.00 0.00 0.00 3.50
2815 5914 1.143073 GGTCAAACTCAAGTCCCACCT 59.857 52.381 0.00 0.00 0.00 4.00
2816 5915 1.133915 TGGTCAAACTCAAGTCCCACC 60.134 52.381 0.00 0.00 0.00 4.61
2817 5916 1.947456 GTGGTCAAACTCAAGTCCCAC 59.053 52.381 0.00 0.00 34.69 4.61
2818 5917 1.474320 CGTGGTCAAACTCAAGTCCCA 60.474 52.381 0.00 0.00 0.00 4.37
2819 5918 1.226746 CGTGGTCAAACTCAAGTCCC 58.773 55.000 0.00 0.00 0.00 4.46
2820 5919 0.586802 GCGTGGTCAAACTCAAGTCC 59.413 55.000 0.00 0.00 0.00 3.85
2821 5920 0.586802 GGCGTGGTCAAACTCAAGTC 59.413 55.000 0.00 0.00 0.00 3.01
2822 5921 0.107410 TGGCGTGGTCAAACTCAAGT 60.107 50.000 0.00 0.00 0.00 3.16
2823 5922 1.197721 GATGGCGTGGTCAAACTCAAG 59.802 52.381 0.00 0.00 0.00 3.02
2824 5923 1.234821 GATGGCGTGGTCAAACTCAA 58.765 50.000 0.00 0.00 0.00 3.02
2825 5924 0.948623 CGATGGCGTGGTCAAACTCA 60.949 55.000 0.00 0.00 0.00 3.41
2826 5925 1.787847 CGATGGCGTGGTCAAACTC 59.212 57.895 0.00 0.00 0.00 3.01
2827 5926 2.325082 GCGATGGCGTGGTCAAACT 61.325 57.895 0.00 0.00 40.36 2.66
2828 5927 2.175811 GCGATGGCGTGGTCAAAC 59.824 61.111 0.00 0.00 40.36 2.93
2848 5947 4.802051 CTGGCATGACCACGGGGG 62.802 72.222 9.50 0.00 46.36 5.40
2850 5949 4.720902 TGCTGGCATGACCACGGG 62.721 66.667 0.00 0.00 46.36 5.28
2851 5950 3.434319 GTGCTGGCATGACCACGG 61.434 66.667 0.00 0.00 46.36 4.94
2852 5951 2.669229 TGTGCTGGCATGACCACG 60.669 61.111 0.00 0.00 46.36 4.94
2853 5952 2.629656 GGTGTGCTGGCATGACCAC 61.630 63.158 16.70 11.60 46.36 4.16
2855 5954 2.034687 AGGTGTGCTGGCATGACC 59.965 61.111 14.86 14.86 39.84 4.02
2856 5955 1.580845 GACAGGTGTGCTGGCATGAC 61.581 60.000 0.00 0.00 0.00 3.06
2857 5956 1.302752 GACAGGTGTGCTGGCATGA 60.303 57.895 0.00 0.00 0.00 3.07
2858 5957 2.683859 CGACAGGTGTGCTGGCATG 61.684 63.158 0.00 0.00 0.00 4.06
2859 5958 2.359107 CGACAGGTGTGCTGGCAT 60.359 61.111 0.00 0.00 0.00 4.40
2860 5959 4.624364 CCGACAGGTGTGCTGGCA 62.624 66.667 0.00 0.00 0.00 4.92
2862 5961 2.520465 TATGCCGACAGGTGTGCTGG 62.520 60.000 0.00 0.00 40.50 4.85
2863 5962 1.079197 TATGCCGACAGGTGTGCTG 60.079 57.895 0.00 0.00 40.50 4.41
2864 5963 1.079127 GTATGCCGACAGGTGTGCT 60.079 57.895 0.00 0.00 40.50 4.40
2865 5964 0.953471 TTGTATGCCGACAGGTGTGC 60.953 55.000 0.00 0.00 40.50 4.57
2866 5965 1.518325 TTTGTATGCCGACAGGTGTG 58.482 50.000 0.00 0.00 40.50 3.82
2867 5966 2.264005 TTTTGTATGCCGACAGGTGT 57.736 45.000 0.00 0.00 40.50 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.