Multiple sequence alignment - TraesCS3B01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3B01G138400 chr3B 100.000 2934 0 0 1 2934 124121326 124118393 0.000000e+00 5419
1 TraesCS3B01G138400 chr3D 88.579 2977 287 26 2 2934 78096024 78098991 0.000000e+00 3565
2 TraesCS3B01G138400 chr3D 88.445 2977 291 25 1 2934 77998330 78001296 0.000000e+00 3542
3 TraesCS3B01G138400 chr7A 88.777 2281 205 26 1 2233 181013988 181016265 0.000000e+00 2747
4 TraesCS3B01G138400 chr7A 88.248 2272 224 22 1 2233 180842937 180845204 0.000000e+00 2676
5 TraesCS3B01G138400 chr7A 87.752 2286 225 22 1 2233 181168061 181170344 0.000000e+00 2619
6 TraesCS3B01G138400 chr7A 87.385 2283 232 31 1 2233 180983966 180986242 0.000000e+00 2569
7 TraesCS3B01G138400 chr7A 87.248 2282 239 26 1 2233 181049550 181051828 0.000000e+00 2555
8 TraesCS3B01G138400 chr7A 95.266 169 8 0 2766 2934 180845196 180845364 4.820000e-68 268
9 TraesCS3B01G138400 chr7A 95.266 169 8 0 2766 2934 180986234 180986402 4.820000e-68 268
10 TraesCS3B01G138400 chr7A 94.675 169 9 0 2766 2934 181016257 181016425 2.240000e-66 263
11 TraesCS3B01G138400 chr7A 93.491 169 11 0 2766 2934 181051820 181051988 4.850000e-63 252
12 TraesCS3B01G138400 chr7A 93.491 169 11 0 2766 2934 181170336 181170504 4.850000e-63 252
13 TraesCS3B01G138400 chr3A 89.280 2015 155 21 957 2934 91285685 91283695 0.000000e+00 2468
14 TraesCS3B01G138400 chr3A 83.109 965 132 16 4 961 91289089 91288149 0.000000e+00 850
15 TraesCS3B01G138400 chr4B 87.556 1792 177 26 948 2699 476571577 476569792 0.000000e+00 2032
16 TraesCS3B01G138400 chr4B 79.809 941 148 30 4 919 476573028 476572105 0.000000e+00 647
17 TraesCS3B01G138400 chr7D 90.642 1432 99 15 837 2233 177169042 177170473 0.000000e+00 1869
18 TraesCS3B01G138400 chr7D 90.533 169 6 6 2766 2934 177170465 177170623 6.370000e-52 215
19 TraesCS3B01G138400 chr4D 87.524 1563 151 15 948 2469 388250875 388249316 0.000000e+00 1766
20 TraesCS3B01G138400 chr4D 83.843 229 36 1 2473 2700 388249009 388248781 1.770000e-52 217
21 TraesCS3B01G138400 chr4A 86.901 1565 159 15 948 2469 69511148 69509587 0.000000e+00 1712
22 TraesCS3B01G138400 chr4A 86.198 1565 170 23 948 2469 69523850 69522289 0.000000e+00 1652
23 TraesCS3B01G138400 chr4A 78.655 937 157 30 3 913 69525341 69524422 1.520000e-162 582
24 TraesCS3B01G138400 chr4A 85.535 159 23 0 2472 2630 69509281 69509123 1.810000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3B01G138400 chr3B 124118393 124121326 2933 True 5419.0 5419 100.0000 1 2934 1 chr3B.!!$R1 2933
1 TraesCS3B01G138400 chr3D 78096024 78098991 2967 False 3565.0 3565 88.5790 2 2934 1 chr3D.!!$F2 2932
2 TraesCS3B01G138400 chr3D 77998330 78001296 2966 False 3542.0 3542 88.4450 1 2934 1 chr3D.!!$F1 2933
3 TraesCS3B01G138400 chr7A 181013988 181016425 2437 False 1505.0 2747 91.7260 1 2934 2 chr7A.!!$F3 2933
4 TraesCS3B01G138400 chr7A 180842937 180845364 2427 False 1472.0 2676 91.7570 1 2934 2 chr7A.!!$F1 2933
5 TraesCS3B01G138400 chr7A 181168061 181170504 2443 False 1435.5 2619 90.6215 1 2934 2 chr7A.!!$F5 2933
6 TraesCS3B01G138400 chr7A 180983966 180986402 2436 False 1418.5 2569 91.3255 1 2934 2 chr7A.!!$F2 2933
7 TraesCS3B01G138400 chr7A 181049550 181051988 2438 False 1403.5 2555 90.3695 1 2934 2 chr7A.!!$F4 2933
8 TraesCS3B01G138400 chr3A 91283695 91289089 5394 True 1659.0 2468 86.1945 4 2934 2 chr3A.!!$R1 2930
9 TraesCS3B01G138400 chr4B 476569792 476573028 3236 True 1339.5 2032 83.6825 4 2699 2 chr4B.!!$R1 2695
10 TraesCS3B01G138400 chr7D 177169042 177170623 1581 False 1042.0 1869 90.5875 837 2934 2 chr7D.!!$F1 2097
11 TraesCS3B01G138400 chr4D 388248781 388250875 2094 True 991.5 1766 85.6835 948 2700 2 chr4D.!!$R1 1752
12 TraesCS3B01G138400 chr4A 69522289 69525341 3052 True 1117.0 1652 82.4265 3 2469 2 chr4A.!!$R2 2466
13 TraesCS3B01G138400 chr4A 69509123 69511148 2025 True 939.5 1712 86.2180 948 2630 2 chr4A.!!$R1 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 874 0.442699 GGCGACGAGGTTGATTCAAC 59.557 55.0 19.17 19.17 42.89 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2601 6024 0.187117 TTGGGTTGTGCTCCATGGAA 59.813 50.0 17.0 0.0 32.48 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.266733 TCGTGTACTTTTTCACCTACTGT 57.733 39.130 0.00 0.00 0.00 3.55
104 105 6.619801 AATGTTTATAGGAAGCGAACATCC 57.380 37.500 0.00 0.00 39.31 3.51
147 148 3.229293 TCGAGACTCGAGAGTAGGGATA 58.771 50.000 23.27 0.00 44.82 2.59
204 209 2.203938 ACCCCACCAGGTGATCGT 60.204 61.111 22.37 10.50 39.24 3.73
239 260 1.077005 CTCCCCATCCTCCTCTCCTAG 59.923 61.905 0.00 0.00 0.00 3.02
266 288 4.954118 AGCGTGGTCCACCTGGGA 62.954 66.667 16.60 0.00 45.89 4.37
341 373 0.606673 GGTTCCTTCTGGTGGCAGTC 60.607 60.000 0.00 0.00 34.23 3.51
381 413 2.722201 GGATCGGCGAGGTGGTTCT 61.722 63.158 17.22 0.00 0.00 3.01
458 493 2.125552 TGCGAGAACATGGCCGAG 60.126 61.111 0.00 0.00 0.00 4.63
539 574 1.565305 GATCTCTGCACGGTAGCAAG 58.435 55.000 6.69 7.23 45.13 4.01
543 579 1.672356 CTGCACGGTAGCAAGGCTT 60.672 57.895 0.00 0.00 45.13 4.35
578 620 4.083862 GGCCACGGTGGTCTCCTC 62.084 72.222 26.86 10.04 39.55 3.71
611 656 1.476074 CAACCGACATGTTGCAACAC 58.524 50.000 33.29 19.89 42.51 3.32
736 783 2.757124 CCCCTCCCGCTTGGCTAAT 61.757 63.158 0.00 0.00 0.00 1.73
781 832 1.576272 TCCCTCTTCCTTCCTCTAGGG 59.424 57.143 0.00 0.00 44.29 3.53
785 836 1.933765 TCTTCCTTCCTCTAGGGCTCT 59.066 52.381 0.00 0.00 35.90 4.09
799 850 1.527370 GCTCTTATCGGTGGCCCTT 59.473 57.895 0.00 0.00 0.00 3.95
823 874 0.442699 GGCGACGAGGTTGATTCAAC 59.557 55.000 19.17 19.17 42.89 3.18
943 1522 4.613866 GTCCTTTTATGTGCGGTTTTAACG 59.386 41.667 0.00 0.00 0.00 3.18
1011 4068 8.219868 TGATAACAGATTACCATGGATGAACAT 58.780 33.333 21.47 0.00 0.00 2.71
1029 4086 5.709631 TGAACATTACAATAGTGGTGTGCAT 59.290 36.000 0.00 0.00 31.22 3.96
1038 4095 6.127925 ACAATAGTGGTGTGCATAATGAGTTG 60.128 38.462 0.00 0.00 0.00 3.16
1051 4108 4.647564 AATGAGTTGGACCTCTTCATGT 57.352 40.909 0.00 0.00 32.50 3.21
1107 4164 3.897657 AATGATGAGATGGATGGCCTT 57.102 42.857 3.32 0.00 34.31 4.35
1157 4214 5.301551 ACACTAATGATGCCAAAGTTGTTGA 59.698 36.000 0.00 0.00 0.00 3.18
1191 4248 3.012518 CAACAATGATGGAGAGACCCAC 58.987 50.000 0.00 0.00 39.34 4.61
1200 4257 0.681733 GAGAGACCCACAGTGAGCAA 59.318 55.000 0.62 0.00 0.00 3.91
1202 4259 1.701847 AGAGACCCACAGTGAGCAAAT 59.298 47.619 0.62 0.00 0.00 2.32
1206 4263 4.265073 AGACCCACAGTGAGCAAATAATC 58.735 43.478 0.62 0.00 0.00 1.75
1208 4265 3.270027 CCCACAGTGAGCAAATAATCGA 58.730 45.455 0.62 0.00 0.00 3.59
1215 4272 5.120674 CAGTGAGCAAATAATCGACACAAGA 59.879 40.000 0.00 0.00 0.00 3.02
1216 4273 5.700832 AGTGAGCAAATAATCGACACAAGAA 59.299 36.000 0.00 0.00 0.00 2.52
1411 4468 1.746615 GCGAGAGGCTTGGCATGAA 60.747 57.895 4.32 0.00 39.11 2.57
1523 4580 9.066892 GGTCACCTAAGATTTGCAATTATATGA 57.933 33.333 0.00 0.89 0.00 2.15
1565 4622 5.934625 AGTACAAACTCCACTGAACATCATC 59.065 40.000 0.00 0.00 0.00 2.92
1579 4646 5.821995 TGAACATCATCGCATTGGATCTTAA 59.178 36.000 0.00 0.00 0.00 1.85
1625 4693 4.960938 TGAACATGGTATCATACTCTGGC 58.039 43.478 0.00 0.00 31.33 4.85
1692 4760 0.254178 AAGATGCAGCGTTGGGAGAT 59.746 50.000 0.16 0.00 0.00 2.75
1746 4814 1.419374 ACTGAACGTCAAGCGATCAC 58.581 50.000 0.00 0.00 45.24 3.06
1820 4888 3.288290 AGGATACCTCGGAGCGCG 61.288 66.667 0.00 0.00 37.17 6.86
1822 4890 2.252855 GATACCTCGGAGCGCGAG 59.747 66.667 12.10 2.27 0.00 5.03
1934 5003 3.136123 CATGGGCCCGCAACTGAG 61.136 66.667 19.37 0.00 0.00 3.35
1963 5032 5.277683 CCATCTTCGATCTTAGCCAATGTTG 60.278 44.000 0.00 0.00 0.00 3.33
1993 5063 7.766219 TCCGCATGAACTATAGTTTTACTTC 57.234 36.000 18.96 6.34 38.56 3.01
1999 5069 7.801547 TGAACTATAGTTTTACTTCGTTCCG 57.198 36.000 18.96 0.00 38.56 4.30
2020 5090 0.462047 AGCTAGCAAATAACGCGCCT 60.462 50.000 18.83 0.00 0.00 5.52
2028 5098 0.109781 AATAACGCGCCTTGTTGCAG 60.110 50.000 5.73 0.00 0.00 4.41
2054 5140 7.009174 GTGGTCGCTTGTTTATTTATTTCCATG 59.991 37.037 0.00 0.00 0.00 3.66
2118 5204 0.336048 ATGGCAGCAATGTAGGGGTT 59.664 50.000 0.00 0.00 0.00 4.11
2122 5208 1.743394 GCAGCAATGTAGGGGTTGTAC 59.257 52.381 0.00 0.00 0.00 2.90
2170 5256 1.078143 GAAGCTCGGTCCAATGCCT 60.078 57.895 0.00 0.00 0.00 4.75
2179 5265 2.790433 GGTCCAATGCCTGTCTTTGTA 58.210 47.619 0.00 0.00 0.00 2.41
2186 5272 5.047802 CCAATGCCTGTCTTTGTATCTTTGT 60.048 40.000 0.00 0.00 0.00 2.83
2226 5312 8.449397 CAGATCAAGTAGATGCCAATAAATAGC 58.551 37.037 0.00 0.00 37.00 2.97
2321 5415 4.272018 GTGTGAGTATGCCATTCATGAGAC 59.728 45.833 0.00 0.00 36.63 3.36
2329 5423 3.713248 TGCCATTCATGAGACACCTCTAT 59.287 43.478 0.00 0.00 40.10 1.98
2331 5425 4.554292 CCATTCATGAGACACCTCTATCG 58.446 47.826 0.00 0.00 40.10 2.92
2333 5427 5.452496 CCATTCATGAGACACCTCTATCGTT 60.452 44.000 0.00 0.00 40.10 3.85
2368 5486 5.163478 GGCAACATAAGCATTCATCCTCTTT 60.163 40.000 0.00 0.00 0.00 2.52
2399 5517 2.229792 GCTGGAAGTGAACCACAATCA 58.770 47.619 0.00 0.00 36.74 2.57
2409 5527 0.039618 ACCACAATCACCATCCACCC 59.960 55.000 0.00 0.00 0.00 4.61
2453 5571 1.079543 GCAGAGTCATGCACGGAGT 60.080 57.895 8.99 0.00 45.77 3.85
2456 5574 2.034685 GCAGAGTCATGCACGGAGTATA 59.965 50.000 8.99 0.00 45.77 1.47
2506 5928 3.327757 TGCAATACTTGGTGAAGGAGTCT 59.672 43.478 0.00 0.00 32.95 3.24
2516 5938 1.916181 TGAAGGAGTCTTTGGGATCCC 59.084 52.381 25.22 25.22 32.52 3.85
2546 5968 2.711542 GGTGGTCTCCGTCATGAATTT 58.288 47.619 0.00 0.00 0.00 1.82
2623 6046 0.452987 CATGGAGCACAACCCAATCG 59.547 55.000 0.00 0.00 35.85 3.34
2630 6053 1.026718 CACAACCCAATCGGAGAGCC 61.027 60.000 0.00 0.00 43.63 4.70
2641 6064 3.597550 GGAGAGCCGAAAGATAGCC 57.402 57.895 0.00 0.00 0.00 3.93
2647 6070 2.171079 CCGAAAGATAGCCGCGCAA 61.171 57.895 8.75 0.00 0.00 4.85
2648 6071 1.701545 CCGAAAGATAGCCGCGCAAA 61.702 55.000 8.75 0.00 0.00 3.68
2662 6085 2.966309 GCAAAGGCGGTGAACCTCG 61.966 63.158 0.00 0.00 36.14 4.63
2664 6087 2.513259 AAAGGCGGTGAACCTCGGA 61.513 57.895 0.00 0.00 36.14 4.55
2677 6100 2.031919 TCGGATGTGTGCCACCAC 59.968 61.111 0.00 0.00 42.40 4.16
2723 6147 4.935702 ACAACAATGTCAAGAATGTGTGG 58.064 39.130 0.00 0.00 33.41 4.17
2738 6162 0.612744 TGTGGGATGATGCGAAGACA 59.387 50.000 0.00 0.00 0.00 3.41
2754 6178 5.359756 CGAAGACAATGTGAATGGGAGATA 58.640 41.667 0.00 0.00 0.00 1.98
2794 6218 1.949525 GGCACAAGAGCAAAGACTTCA 59.050 47.619 0.00 0.00 35.83 3.02
2854 6278 2.857186 TGCAATGCTCTTGTCTGGTA 57.143 45.000 6.82 0.00 0.00 3.25
2857 6281 3.273434 GCAATGCTCTTGTCTGGTATCA 58.727 45.455 0.00 0.00 0.00 2.15
2899 6323 7.070198 TGCTTTGGATGACATATCCATTGAAAT 59.930 33.333 9.26 0.00 46.51 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 6.705302 TCAGTAGTCGTCTTCCTTAGAACTA 58.295 40.000 0.00 0.00 33.81 2.24
91 92 1.745489 AAGCCGGATGTTCGCTTCC 60.745 57.895 5.05 0.00 37.89 3.46
104 105 2.125552 TCCGTCTCATGCAAGCCG 60.126 61.111 0.00 0.00 0.00 5.52
169 171 2.125512 GAGCGAGCGAACATGGGT 60.126 61.111 0.00 0.00 0.00 4.51
202 207 2.253403 GAGGGGGCTAGGGTTTGACG 62.253 65.000 0.00 0.00 0.00 4.35
204 209 1.618447 GGAGGGGGCTAGGGTTTGA 60.618 63.158 0.00 0.00 0.00 2.69
301 324 2.677228 CCGAGTGCCTGGGGAAAT 59.323 61.111 0.00 0.00 0.00 2.17
324 356 0.397941 CAGACTGCCACCAGAAGGAA 59.602 55.000 0.00 0.00 41.77 3.36
359 391 2.502492 CCACCTCGCCGATCCAGAT 61.502 63.158 0.00 0.00 0.00 2.90
511 546 2.124983 GCAGAGATCCGCAAGCCA 60.125 61.111 0.00 0.00 0.00 4.75
515 550 1.600511 TACCGTGCAGAGATCCGCAA 61.601 55.000 3.83 0.00 40.44 4.85
539 574 2.674220 CCTCCACCTCCAGGAAGCC 61.674 68.421 0.00 0.00 38.94 4.35
543 579 2.122729 CCACCTCCACCTCCAGGA 59.877 66.667 0.00 0.00 38.94 3.86
564 606 4.778415 CGCGAGGAGACCACCGTG 62.778 72.222 0.00 0.00 34.73 4.94
582 627 3.587933 GTCGGTTGCCAACGCCAA 61.588 61.111 0.74 0.00 0.00 4.52
611 656 1.664321 CTCGTGAAGTCCCCCTACCG 61.664 65.000 0.00 0.00 0.00 4.02
756 803 3.327439 AGAGGAAGGAAGAGGGAACAAA 58.673 45.455 0.00 0.00 0.00 2.83
781 832 0.815615 CAAGGGCCACCGATAAGAGC 60.816 60.000 6.18 0.00 43.47 4.09
785 836 1.540267 CAAACAAGGGCCACCGATAA 58.460 50.000 6.18 0.00 43.47 1.75
799 850 0.250124 ATCAACCTCGTCGCCAAACA 60.250 50.000 0.00 0.00 0.00 2.83
835 887 1.379443 CTGCCATCCACCAGCATGT 60.379 57.895 0.00 0.00 35.64 3.21
883 935 1.591504 CGACCCAAAAATCCCCACCG 61.592 60.000 0.00 0.00 0.00 4.94
920 1499 4.613866 CGTTAAAACCGCACATAAAAGGAC 59.386 41.667 0.00 0.00 0.00 3.85
943 1522 5.011840 CCCCTATGTAGAACTAAAGGTAGCC 59.988 48.000 0.00 0.00 0.00 3.93
952 1543 9.670442 AGAATGTTATTCCCCTATGTAGAACTA 57.330 33.333 0.00 0.00 0.00 2.24
1007 4055 7.695480 TTATGCACACCACTATTGTAATGTT 57.305 32.000 0.00 0.00 0.00 2.71
1011 4068 7.109501 ACTCATTATGCACACCACTATTGTAA 58.890 34.615 0.00 0.00 0.00 2.41
1029 4086 5.248248 TGACATGAAGAGGTCCAACTCATTA 59.752 40.000 0.00 0.00 39.97 1.90
1038 4095 2.479566 TGCTTGACATGAAGAGGTCC 57.520 50.000 0.00 0.00 31.59 4.46
1051 4108 1.846007 AGGTGGTTGTGTTTGCTTGA 58.154 45.000 0.00 0.00 0.00 3.02
1088 4145 2.987437 AGAAGGCCATCCATCTCATCAT 59.013 45.455 5.01 0.00 35.65 2.45
1107 4164 1.961394 ACGACAGTAGTGGCTTCAAGA 59.039 47.619 1.00 0.00 0.00 3.02
1138 4195 3.998341 GCATCAACAACTTTGGCATCATT 59.002 39.130 0.00 0.00 0.00 2.57
1149 4206 2.816087 GTCATGGTCTGCATCAACAACT 59.184 45.455 0.00 0.00 0.00 3.16
1157 4214 3.423749 TCATTGTTGTCATGGTCTGCAT 58.576 40.909 0.00 0.00 0.00 3.96
1191 4248 4.926860 TGTGTCGATTATTTGCTCACTG 57.073 40.909 0.00 0.00 0.00 3.66
1215 4272 3.009723 CAGACGGTGATAATTGGCACTT 58.990 45.455 10.92 0.00 35.43 3.16
1216 4273 2.632377 CAGACGGTGATAATTGGCACT 58.368 47.619 10.92 0.00 35.43 4.40
1510 4567 9.539825 AACAACAAAGTGTTCATATAATTGCAA 57.460 25.926 0.00 0.00 38.77 4.08
1601 4669 6.269769 TGCCAGAGTATGATACCATGTTCATA 59.730 38.462 0.00 6.28 34.52 2.15
1625 4693 7.431084 GGTATGCGTCATTTTAATTAGTGGTTG 59.569 37.037 0.00 0.00 0.00 3.77
1663 4731 1.105167 GCTGCATCTTGCCCTGCATA 61.105 55.000 0.00 0.00 46.48 3.14
1692 4760 5.770663 TCATTTTCTACCCAACGATTTTGGA 59.229 36.000 4.54 0.00 42.06 3.53
1741 4809 3.171277 GTTTTGCATAGCCAACGTGATC 58.829 45.455 0.00 0.00 0.00 2.92
1746 4814 2.979813 GTCTTGTTTTGCATAGCCAACG 59.020 45.455 0.00 0.00 0.00 4.10
1799 4867 0.535328 CGCTCCGAGGTATCCTGAGA 60.535 60.000 0.00 0.00 31.76 3.27
1820 4888 5.183331 TCATATTCTCGGTGTATAGGCACTC 59.817 44.000 0.00 0.00 41.75 3.51
1822 4890 5.386958 TCATATTCTCGGTGTATAGGCAC 57.613 43.478 0.00 0.00 38.56 5.01
1934 5003 3.929610 GGCTAAGATCGAAGATGGTATGC 59.070 47.826 0.00 0.00 45.12 3.14
1963 5032 7.484035 AAACTATAGTTCATGCGGAAGAATC 57.516 36.000 18.28 0.00 37.25 2.52
1999 5069 1.070776 GGCGCGTTATTTGCTAGCTAC 60.071 52.381 17.23 5.50 0.00 3.58
2020 5090 1.029408 ACAAGCGACCACTGCAACAA 61.029 50.000 0.00 0.00 33.85 2.83
2028 5098 6.383415 TGGAAATAAATAAACAAGCGACCAC 58.617 36.000 0.00 0.00 0.00 4.16
2054 5140 1.207329 ACGTAGAAACCATGAGAGCCC 59.793 52.381 0.00 0.00 0.00 5.19
2118 5204 0.739462 CCAAAGCCGCTCATCGTACA 60.739 55.000 0.00 0.00 36.19 2.90
2122 5208 1.524621 ATCCCAAAGCCGCTCATCG 60.525 57.895 0.00 0.00 38.08 3.84
2170 5256 8.731605 TGTTACAAACACAAAGATACAAAGACA 58.268 29.630 0.00 0.00 36.25 3.41
2179 5265 9.301153 GATCTGTTTTGTTACAAACACAAAGAT 57.699 29.630 10.28 10.95 43.31 2.40
2186 5272 9.168451 TCTACTTGATCTGTTTTGTTACAAACA 57.832 29.630 10.28 10.57 40.21 2.83
2226 5312 6.324522 TGCAACTTGTATGTTTGTTTTTCG 57.675 33.333 0.00 0.00 0.00 3.46
2399 5517 2.129555 GAGTGCACAGGGTGGATGGT 62.130 60.000 21.04 0.00 36.11 3.55
2453 5571 2.838202 GCTTCGGATCCCCCTCATTATA 59.162 50.000 6.06 0.00 0.00 0.98
2456 5574 0.695803 AGCTTCGGATCCCCCTCATT 60.696 55.000 6.06 0.00 0.00 2.57
2516 5938 3.901797 GAGACCACCGGGCACAAGG 62.902 68.421 6.32 0.00 37.90 3.61
2536 5958 4.577875 TCCCATTTGGCAAAATTCATGAC 58.422 39.130 17.70 0.00 33.59 3.06
2537 5959 4.904895 TCCCATTTGGCAAAATTCATGA 57.095 36.364 17.70 5.46 33.59 3.07
2546 5968 5.002516 GTGATGAAATTTCCCATTTGGCAA 58.997 37.500 15.48 0.00 0.00 4.52
2601 6024 0.187117 TTGGGTTGTGCTCCATGGAA 59.813 50.000 17.00 0.00 32.48 3.53
2623 6046 0.319125 CGGCTATCTTTCGGCTCTCC 60.319 60.000 0.00 0.00 0.00 3.71
2630 6053 0.315382 CTTTGCGCGGCTATCTTTCG 60.315 55.000 8.83 0.00 0.00 3.46
2647 6070 2.291043 ATCCGAGGTTCACCGCCTT 61.291 57.895 0.00 0.00 42.08 4.35
2648 6071 2.683933 ATCCGAGGTTCACCGCCT 60.684 61.111 0.00 0.00 42.08 5.52
2677 6100 3.688185 GGCCACTATATGCACATCATCTG 59.312 47.826 0.00 0.00 36.63 2.90
2692 6115 2.937519 TGACATTGTTGTTGGCCACTA 58.062 42.857 3.88 0.00 35.79 2.74
2693 6116 1.774110 TGACATTGTTGTTGGCCACT 58.226 45.000 3.88 0.00 35.79 4.00
2723 6147 2.938451 TCACATTGTCTTCGCATCATCC 59.062 45.455 0.00 0.00 0.00 3.51
2738 6162 4.858850 TGCACTTATCTCCCATTCACATT 58.141 39.130 0.00 0.00 0.00 2.71
2754 6178 3.505293 GCCTTTCTCTCTTGAATGCACTT 59.495 43.478 0.00 0.00 0.00 3.16
2794 6218 2.747467 CGTCCTTGGATGCCATGATCTT 60.747 50.000 0.00 0.00 31.53 2.40
2854 6278 5.563876 AGCACATCTAGGTCAATGATGAT 57.436 39.130 8.86 0.00 39.72 2.45
2857 6281 4.885907 CCAAAGCACATCTAGGTCAATGAT 59.114 41.667 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.